Protein data in table form

 

Attribute Type Undefined Description Default

id identity no EpoDB Id none

created_by string no annotator initials none

created_datime datetime no time of parsing none

last_modified_by string no annotator initials none

last_modified_datime datetime no time of update none

protein_unit_id table_id no pointer to protein unit none

extent string no indicates whether sequence is complete or not COMPLETE

seq string no amino acid sequence none

   

Attribute Type Undefined Description Default

id identity no EpoDB Id none

created_by string no annotator initials none

created_datime datetime no time of parsing none

last_modified_by string no annotator initials none

last_modified_datime datetime no time of update none

protein_unit_id table_id no pointer to protein unit none

sp_id string no SWISS-PROT entry name none

status string no SWISS-PROT data class none

primary_accession string no SWISS-PROT accession number none

secondary_accessions string set yes SWISS-PROT secondary accessions none

gene_name string yes gene names none

first_created string no SWISS-PROT date of creation none

last_sequence_update string no SWISS-PROT date of last seq update none

last_annotation_update string no SWISS-PROT date of last annot update none

organism_scientific string no genus species none

organism_common string yes common name none

tax_classification string no taxonomic classification none

db_xref record set yes database cross-references none

embl_xref record set yes EMBL cross-references none

key_words string set yes keywords none

   

Attribute Type Undefined Description Default

id identity no EpoDB Id none

created_by string no annotator initials none

created_datime datetime no time of parsing none

last_modified_by string no annotator initials none

last_modified_datime datetime no time of update none

name string no protein name none

synonyms string set yes alternative names none

family string yes protein family none

gene_origin string no gene origin (organelle or nuclear) nuclear

amino_acids int no length in amino acids none

mol_weight int no MW (rounded to nearest gram) none

cyclic_redundancy_check string no 32-bit cyclic redundancy check CRC32 none

post_translational_modification string yes post translational modification none

caution string yes warning about possible errors and/or confusion none

comments string set yes OTHER comments none

references string set no references none

   

Attribute Type Undefined Description Default

id identity no EpoDB Id none

created_by string no annotator initials none

created_datime datetime no time of parsing none

last_modified_by string no annotator initials none

last_modified_datime datetime no time of update none

protein_unit_id table_id no pointer to protein unit none

category string no class of feature none

name string no name of feature none

description string yes description of feature none

start int no start of feature none

end string no end of feature none

feature_source string yes place of feature addition _

   

Attribute Type Undefined Description Default

id identity no EpoDB Id none

created_by string no annotator initials none

created_datime datetime no time of parsing none

last_modified_by string no annotator initials none

last_modified_datime datetime no time of update none

protein_unit_id table_id no pointer to protein unit none

method string no method none

mass real no MW none

mass_error real yes MW error none

mass_start int no start of protein sequence for which MW was determined 1

mass_end int no end of protein sequence for which MW was determined length

   

Attribute Type Undefined Description Default

id identity no EpoDB Id none

created_by string no annotator initials none

created_datime datetime no time of parsing none

last_modified_by string no annotator initials none

last_modified_datime datetime no time of update none

protein_unit_id table_id no pointer to protein unit none

function_description string yes general function description none

domain string yes description of the domain structure of a protein none

subunit string yes description of the quaternary structure none

catalytic_activity string yes description of the reaction(s) catalysed by an enzyme none

pathway string yes description of the metabolic pathway(s) in which protein participates none

   

Attribute Type Undefined Description Default

id identity no EpoDB Id none

created_by string no annotator initials none

created_datime datetime no time of parsing none

last_modified_by string no annotator initials none

last_modified_datime datetime no time of update none

protein_unit_id table_id no pointer to protein unit none

disease_association string yes description of the disease(s) associated with a deficiency of a protein none

polymorphism string yes description of polymorphism(s) none

similarity string yes description of the similariti(es) (sequence or structural) of a protein with other proteins none

database record yes cross reference to mutation db none

   

Attribute Type Undefined Description Default

id identity no EpoDB Id none

created_by string no annotator initials none

created_datime datetime no time of parsing none

last_modified_by string no annotator initials none

last_modified_datime datetime no time of update none

protein_unit_id table_id no pointer to protein unit none

alternative_products string yes dscription of the existence of related protein sequence(s) produced by alternative splicing of the same gene(s) or by the use of alternative initiation codons none

induction_of_synthesis string yes description of the compound(s) which stimulate the synthesis of a protein none

rough_developmental_stage string yes description of the developmental specific expression of a protein none

tissue_specificity string yes description of the tissue specificity of a protein none

subcellular_location string yes description of the subcellular location of a mature protein product none

   

Attribute Type Undefined Description Default

id identity no EpoDB Id none

created_by string no annotator initials none

created_datime datetime no time of parsing none

last_modified_by string no annotator initials none

last_modified_datime datetime no time of update none

protein_unit_id table_id no pointer to protein unit none

mechanism string yes description of an enzyme regulatory mechanism none

cofactor string yes description of an enzyme cofactor none

 

Attribute Type Undefined Description Default

id identity no EpoDB Id none

created_by string no annotator initials none

created_datime datetime no time of parsing none

last_modified_by string no annotator initials none

last_modified_datime datetime no time of update none

ec_number string yes EC number none

catalyzed_by string no name of protein_unit none

left string list yes left side of written reaction none

left_coefficients int list no coefficients for left side of reaction none

right string list no right side of written reaction none

right_coefficients int list no coefficients for right side of reaction none