Transcription data in table form

 

id identity no EpoDB Id none

created_by string no annotator initials none

created_datime datetime no time of parsing none

last_modified_by string no annotator initials none

last_modified_datime datetime no time of update none

regulatory_regions table_id set no pointer(s) to row(s) in regulatory regions table none

region_alignments record set yes comments re. alignment with homologous regions none

   

id identity no EpoDB Id none

created_by string no annotator initials none

created_datime datetime no time of parsing none

last_modified_by string no annotator initials none

last_modified_datime datetime no time of update none

transcriptional_regulation table_id no pointer to row in table transcriptional_regulation none

trrd_id string no TRRD entry id none

gene_accession int gene accession number in TRRD none

transfac_gene_accession string no accession number common to TRRD and Transfac none

trrd_annotated_by string no TRRD annotator none

trrd_last_modified string TRRD's last date of editing none

organism string organism field in TRRD none

gene_name string gene name field in TRRD none

gen_comments record set comments re. gene none

database_gene_source string set database and accession of entry containing region none

epd_gene_class string gene class according to EPD classification scheme none

key_words string set keywords in TRRD none

chromosomal_loc record chromosomal localization none

   

id identity no EpoDB Id none

created_by string no annotator initials none

created_datime datetime no time of parsing none

last_modified_by string no annotator initials none

last_modified_datime datetime no time of update none

transcriptional_regulation table_id no pointer to row in table transcriptional_regulation none

comments_about record set comments re. specificity of gene regulation none

dev_stage record set stages of regulation of expression none

repression_by record set factors repressing expression none

tissue_where__not_expressed record set tissues where gene is not expressed none

tissue_where_expressed record set tissues where gene is expressed none

induction_by record set factors inducing expression none

cell_cycle record set stages of cell cycle stages at which expression is regulated none

   

id identity no EpoDB Id none

created_by string no annotator initials none

created_datime datetime no time of parsing none

last_modified_by string no annotator initials none

last_modified_datime datetime no time of update none

transcriptional_regulation table_id no pointer to row in table transcriptional_regulation none

region_name string name of regulatory region none

composite_elements table_id set pointers to composite elements in region none

regulatory_units table_id set pointers to regulatory units in region none

   

id identity no EpoDB Id none

created_by string no annotator initials none

created_datime datetime no time of parsing none

last_modified_by string no annotator initials none

last_modified_datime datetime no time of update none

transcriptional_regulation table_id no pointer to row in table transcriptional_regulation none

unit_name string name of regulatory unit none

point_name string name of position in the sequence relative to which other positions are enumerated none

start int start of unit none

end int end of unit none

epo_sites table_id set pointers to binding sites in unit none

trrd_sites int set TRRD ids for binding sites in unit none

reference string reference used to extract data none

   

id identity no EpoDB Id none

created_by string no annotator initials none

created_datime datetime no time of parsing none

last_modified_by string no annotator initials none

last_modified_datime datetime no time of update none

transcriptional_regulation table_id no pointer to row in table transcriptional_regulation none

name string name of composite element none

compel_acc string accession number in COMPEL database none

start int start of composite element none

end int end of composite element none

epo_sites table_id set pointers to binding sites in element none

trrd_sites int set TRRD ids for binding sites in element none

reference string reference used to extract data none

   

id identity no EpoDB Id none

created_by string no annotator initials none

created_datime datetime no time of parsing none

last_modified_by string no annotator initials none

last_modified_datime datetime no time of update none

transcriptional_regulation table_id no pointer to row in table transcriptional_regulation none

trrd_accession int TRRD accession number for site none

transfac_acc string set Transfac accession number for site none

name record name of binding site none

core_seq record binding site core sequence and reference none

core_sec_location record start, end and reference for core sequence none

footprint_seq record binding site sequence determined by footprint experiment none

footprint_location record start, end and reference for footprint sequence none

footprint_expts record set cell type, experiment names and references for footprint experiments none

ref_to_GenBank record pointer to GenBank entry and start of site none

homology_to_other record set homologous sites and references none

el_comments record set comments and references re. binding sites none

binding_factor table_id set pointers to factors which bind this site none

   

id identity no EpoDB Id none

created_by string no annotator initials none

created_datime datetime no time of parsing none

last_modified_by string no annotator initials none

last_modified_datime datetime no time of update none

transcriptional_regulation table_id no pointer to row in table transcriptional_regulation none

transfac_id string Transfac id for factor none

name record short and long names for factor plus reference none

class string factor class none

comparative_affinity record set comparative affinity of factors to binding sites none

transcription_effect record effect on transcription and reference none

binding_site table_id set pointers to binding sites to which factor binds none