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Next: Expression data in relational tables Up: Guide to the EpoDB Previous: Protein data in table

Transcription data in table form

 
id identity no EpoDB Id none
created_by string no annotator initials none
created_datime datetime no time of parsing none
last_modified_by string no annotator initials none
last_modified_datime datetime no time of update none
regulatory_regions table_id set no pointer(s) to row(s) in regulatory regions table none
region_alignments record set yes comments re. alignment with homologous regions none
   
id identity no EpoDB Id none
created_by string no annotator initials none
created_datime datetime no time of parsing none
last_modified_by string no annotator initials none
last_modified_datime datetime no time of update none
transcriptional_regulation table_id no pointer to row in table transcriptional_regulation none
trrd_id string no TRRD entry id none
gene_accession int   gene accession number in TRRD none
transfac_gene_accession string no accession number common to TRRD and Transfac none
trrd_annotated_by string no TRRD annotator none
trrd_last_modified string   TRRD's last date of editing none
organism string   organism field in TRRD none
gene_name string   gene name field in TRRD none
gen_comments record set   comments re. gene none
database_gene_source string set   database and accession of entry containing region none
epd_gene_class string   gene class according to EPD classification scheme none
key_words string set   keywords in TRRD none
chromosomal_loc record   chromosomal localization none
   
id identity no EpoDB Id none
created_by string no annotator initials none
created_datime datetime no time of parsing none
last_modified_by string no annotator initials none
last_modified_datime datetime no time of update none
transcriptional_regulation table_id no pointer to row in table transcriptional_regulation none
comments_about record set   comments re. specificity of gene regulation none
dev_stage record set   stages of regulation of expression none
repression_by record set   factors repressing expression none
tissue_where__not_expressed record set   tissues where gene is not expressed none
tissue_where_expressed record set   tissues where gene is expressed none
induction_by record set   factors inducing expression none
cell_cycle record set   stages of cell cycle stages at which expression is regulated none
   
id identity no EpoDB Id none
created_by string no annotator initials none
created_datime datetime no time of parsing none
last_modified_by string no annotator initials none
last_modified_datime datetime no time of update none
transcriptional_regulation table_id no pointer to row in table transcriptional_regulation none
region_name string   name of regulatory region none
composite_elements table_id set   pointers to composite elements in region none
regulatory_units table_id set   pointers to regulatory units in region none
   
id identity no EpoDB Id none
created_by string no annotator initials none
created_datime datetime no time of parsing none
last_modified_by string no annotator initials none
last_modified_datime datetime no time of update none
transcriptional_regulation table_id no pointer to row in table transcriptional_regulation none
unit_name string   name of regulatory unit none
point_name string   name of position in the sequence relative to which other positions are enumerated none
start int   start of unit none
end int   end of unit none
epo_sites table_id set   pointers to binding sites in unit none
trrd_sites int set   TRRD ids for binding sites in unit none
reference string   reference used to extract data none
   
id identity no EpoDB Id none
created_by string no annotator initials none
created_datime datetime no time of parsing none
last_modified_by string no annotator initials none
last_modified_datime datetime no time of update none
transcriptional_regulation table_id no pointer to row in table transcriptional_regulation none
name string   name of composite element none
compel_acc string   accession number in COMPEL database none
start int   start of composite element none
end int   end of composite element none
epo_sites table_id set   pointers to binding sites in element none
trrd_sites int set   TRRD ids for binding sites in element none
reference string   reference used to extract data none
   
id identity no EpoDB Id none
created_by string no annotator initials none
created_datime datetime no time of parsing none
last_modified_by string no annotator initials none
last_modified_datime datetime no time of update none
transcriptional_regulation table_id no pointer to row in table transcriptional_regulation none
trrd_accession int   TRRD accession number for site none
transfac_acc string set   Transfac accession number for site none
name record   name of binding site none
core_seq record   binding site core sequence and reference none
core_sec_location record   start, end and reference for core sequence none
footprint_seq record   binding site sequence determined by footprint experiment none
footprint_location record   start, end and reference for footprint sequence none
footprint_expts record set   cell type, experiment names and references for footprint experiments none
ref_to_GenBank record   pointer to GenBank entry and start of site none
homology_to_other record set   homologous sites and references none
el_comments record set   comments and references re. binding sites none
binding_factor table_id set   pointers to factors which bind this site none
   
id identity no EpoDB Id none
created_by string no annotator initials none
created_datime datetime no time of parsing none
last_modified_by string no annotator initials none
last_modified_datime datetime no time of update none
transcriptional_regulation table_id no pointer to row in table transcriptional_regulation none
transfac_id string   Transfac id for factor none
name record   short and long names for factor plus reference none
class string   factor class none
comparative_affinity record set   comparative affinity of factors to binding sites none
transcription_effect record   effect on transcription and reference none
binding_site table_id set   pointers to binding sites to which factor binds none
 

next up previous
Next: Expression data in relational tables Up: Guide to the EpoDB Previous: Protein data in table

Fidel Salas
1/15/1998