EpoDB Server Page (version 2.2)

EpoDB is currently restored and alive.

EpoDB is supported by grant number R01-RR04026-08 from the National Center for Research Resources,NIH

Tutorial What can you use EpoDB for?

Transcription unit showing the features and sample heuristics used in annotating GenBank entries.

Browse EpoDB Entries Quick Text Search This query allows all the entries in EpoDB to be accessed by a Boolean text search. DNA searches look at the GenBank definition line, species name, reference gene status (ref or 0), and molecule type (dna or rna) and EPoDB and GenBank IDs. Protein searches look at taxonomy, name, and IDs for EpoDB, Swiss-Prot, EMBL and Medline. Enter Query...The search is case insensitive and will accept ( ) and " " delimiters! Help with syntax Outline file to query Specific Gene Searches Gene Name Retrieve reference (fully-annotated and complete) genes. Gene Family Name Retrieve reference genes by cellular roles and location. Gene ID Retrieve any entry you know the ID for. Gene expression Retrieve summaries of experiments looking at gene expression. Gene Groups Retrieve all entries representing the same gene.
Specific Gene Searches Gene Name Retrieve reference (fully-annotated and complete) genes. Gene Family Name Retrieve reference genes by cellular roles and location. Gene ID Retrieve any entry you know the ID for. Gene expression Retrieve summaries of experiments looking at gene expression. Gene Groups Retrieve all entries representing the same gene.

Gene Landmarks Retrieve sequence relative to transcriptional and translational starts and stops then analyze them.

Gene FeaturesRetrieve sequence encoding specified transcribed and translated regions then analyze them.

Promoter Box Search promoters for 1 or 2 specified sequences

Blast Searches Search EpoDB for similar sequences.

NCBI