EpoDB Query: Find Entries by Gene Groups

This application enables a user to search gene groups by either a gene name (from our controlled vocabulary list) or keyword (from the GenBank keyword field of RNA entries). Gene groups are entries from the same organism with high (98%) sequence similarity.

Please choose a gene name or a keyword by clicking on the appropriate button and selecting from the list.

Gene names return groups with representative (reference) genes. Keywords search the GenBank definition line and the groups keyword list. Note that keywordss are NOT from a controlled vocabulary, hence the multiple ways terms are listed

Gene_Name:

Keyword:

To restrict your search you may select an organism.

Please note that in many cases selecting an organism and gene name or keyword will return no hits. Selecting ONLY an organism (and no gene name or keyword) will return all the groups for that organism.

This query should take a minute or less to return a result.

The output of the query will be grouped in several blocks each representing the requested gene from different organisms.
In each block, the information is organized in two different groups (if available): DNA or RNA
If available, there will be a representative gene at the top of each block which is in a reference entry that contains the complete gene and is completely annotated.
This query should take a minute or less to return a result.

The EpoDB group epodb@pcbi.upenn.edu)