Databases available for MAST search
MAST -- Motif Alignment and Search Tool
Motif search tool
Databases available for MAST search
Peptide Sequence Databases
- nr
- All non-redundant GenBank CDS translations+PDB+SwissProt+PIR
- month
- All new or revised GenBank CDS translation+PDB+SwissProt+PIR released in
the last 30 days.
- swissprot
- the last major release of the SWISS-PROT protein sequence
database (no updates)
- yeast
- Yeast (Saccharomyces cerevisiae) protein sequences.
-
pdb
- Sequences derived from the 3-dimensional structure
Brookhaven Protein Data Bank
- ecoli
- Complete E. coli genome
Nucleotide Sequence Databases
nr
All Non-redundant GenBank+EMBL+DDBJ+PDB sequences (but
no EST's or STS's)
month
All new or revised GenBank+EMBL+DDBJ+PDB sequences released in the last
30 days.
dbest
Non-redundant Database of GenBank+EMBL+DDBJ EST Divisions
dbsts
Non-redundant Database of GenBank+EMBL+DDBJ STS Divisions
yeast
Yeast (Saccharomyces cerevisiae) genomic nucleotide sequences
pdb
Sequences derived from the 3-dimensional structure
vector
Vector subset of GenBank(R), NCBI, (anonymous FTP
to ncbi.nlm.nih.gov beneath the /pub/vector directory)
mito
Database of mitochondrial sequences, Rel. 1.0, July 1995"
gss
Genome Survey Sequence, includes single-pass genomic data, exon-trapped
sequences, and Alu PCR sequences.
ecoli
Complete E. coli genome