Databases available for MAST search

MAST -- Motif Alignment and Search Tool

Motif search tool


Databases available for MAST search


Peptide Sequence Databases


nr
All non-redundant GenBank CDS translations+PDB+SwissProt+PIR

month
All new or revised GenBank CDS translation+PDB+SwissProt+PIR released in the last 30 days.

swissprot
the last major release of the SWISS-PROT protein sequence database (no updates)

yeast
Yeast (Saccharomyces cerevisiae) protein sequences.

pdb
Sequences derived from the 3-dimensional structure Brookhaven Protein Data Bank

ecoli
Complete E. coli genome

Nucleotide Sequence Databases


nr
All Non-redundant GenBank+EMBL+DDBJ+PDB sequences (but no EST's or STS's)

month
All new or revised GenBank+EMBL+DDBJ+PDB sequences released in the last 30 days.

dbest
Non-redundant Database of GenBank+EMBL+DDBJ EST Divisions

dbsts
Non-redundant Database of GenBank+EMBL+DDBJ STS Divisions

yeast
Yeast (Saccharomyces cerevisiae) genomic nucleotide sequences

pdb
Sequences derived from the 3-dimensional structure

vector
Vector subset of GenBank(R), NCBI, (anonymous FTP to ncbi.nlm.nih.gov beneath the /pub/vector directory)

mito
Database of mitochondrial sequences, Rel. 1.0, July 1995"

gss
Genome Survey Sequence, includes single-pass genomic data, exon-trapped sequences, and Alu PCR sequences.

ecoli
Complete E. coli genome