The frequency matrix for muscle gene Sp1 sites... 
(reverse complement sequence in paper)

  0.0  3.0  2.0  1.0  0.0  0.0  4.0  0.0  0.0  0.0  0.0
  6.0  4.0  8.0 10.0 12.0 12.0  0.0 12.0 12.0 12.0 11.0
  5.0  2.0  2.0  1.0  0.0  0.0  6.0  0.0  0.0  0.0  1.0
  1.0  3.0  0.0  0.0  0.0  0.0  2.0  0.0  0.0  0.0  0.0


The resulting weight matrix...


 -2.16  0.00 -0.43 -1.05 -2.16 -2.16  0.33 -2.16 -2.16 -2.16 -2.16
  0.83  0.33  1.20  1.49  1.73  1.73 -2.16  1.73  1.73  1.73  1.62
  0.60 -0.43 -0.43 -1.05 -2.16 -2.16  0.83 -2.16 -2.16 -2.16 -1.05
 -1.05  0.00 -2.16 -2.16 -2.16 -2.16 -0.43 -2.16 -2.16 -2.16 -2.16




The frequency matrix was generated by aligning the Sp1 sites 
within the following list using a Gibbs sampling algorithim.  
Where possible two orthologous sites were obtained.  To 
maintain equal weighting for each gene, two copies of Sp1
sites were included if no orthologous gene was available.

> 1  actin-a cardiac human
gtggcagaccgggccccccacccctgcccccggctgctccaactgaccctgtccat
> 1 mouse
aaggcaaggtggcagatcaggggccccccacccctgcccccggctgctccaactga
> 2 TnC - slow mouse
ggccaggggcagataacactgccccaccccctgcataccaaagtccccagcacaatcacca
> 2 human
gcacgcctgcttatcctgtgggagtccatggagccggggtggggacagccctccacccagtgcccataca
> 3  cTnT chicken
TCACAAGTGTTGCATTCCTCTCTGGGCGCCGGGCACATTCCTGCTGCTCTGCCCGCCCCGGGGTGGGCGCCG
> 3  cTnT chicken
TCACAAGTGTTGCATTCCTCTCTGGGCGCCGGGCACATTCCTGCTGCTCTGCCCGCCCCGGGGTGGGCGCCG
> 4  skel a-actin rat
AAATATGGCTTGGGAAGGGCAACAACATTCCTTCGGGCGGTGTGGAGAGCTCAGGACTATA
> 4 cow
ggggagcgacatcctgcggggcggcgcgaggggagcgcccgagggctatataaaacctgag 
> 5 anf human
TTGGCAGCTTTATCACTGCAAGTGACAGAATGGGGAGGGTTCTGTCTCTCCTGCGT
> 5 cow
cactgcaagtgacagaatggggagggttccgtccctctcccggacgagctcccagagagc
> myo d 6 sheep
aagctcctccctgctctgttcctattggcctcgggcgcccccgcccctagccgctagctggggctcg
> 6 mouse
ccccaagctccgccctactacactcctattggcttgaggcgcccccgcccccagcctccctttccag