These are the 200 bp sequences which were used as 
the positive portion of the training set for the 
logistic regression analysis.  The negative 
sequences were randomly selected from EPD and 
GenBank:Primate.


> AChR alpha, mouse promoter/enhancer
TGTTAAGCAAGGCACGTCTGTGGCCACAGAAGGCCCCAagctttgaggct
gtgggcagctcagctgtcatgcgggcacacaggtgatgtaagacaatagc
tgtggagtcagctggcttccaaggCCAGCAGCCAAGCTCCCTAAGCCAGG
GTGGAGTAGGACCGGCAGCAAGCCGCTGGCGGCCACAGCGGCACCCACAG
> AChR beta, mouse promoter/enhancer, -119 to +31
GGAGTGTTATCTGACATTTGTGAGTGGAGGGCGACTGcagttgctccggg
cgggaccaagtcccgagggcggggcgggtgggctggcgtctggtcccccg
acaacaggtgcacattcctgggcgcctcgtcacttcccctggcctgaggc
gctatccggacaaacttcactgagcgaaagaggcagGGCATGGCCTTAGG
> AChR gamma, rat promoter, -157 to +10 
accctgggaacagctgacaatgaagtagtcagacagctggtggggcctga
tagagctggcagggttggctgggaggggcgtgtaggctgacacaggacac
tccaaccccccaaccccaagacctgtaaagctactgtcctactcatcact
gggcagaactgaggcaccATGCACGGGGGCCAgggacctcagctcctctt
> AChR delta, mouse promoter/enhancer
ACCAACAATCTGTGACAATCCtgcctgggatcttttcgttctgcccttgg
ctcctgccctaactggcaaaccccaccccctcatcaccagctttcaagta
tcagattgcgtttccggcctcttctttccaaacccctaaaccaccagcac
ctgtccccttgcttgcctcattccacagcaacaggctgaagggAAGACAA
> Desmin enhancer, human, -973 to -848
TAGCCTTCCTTATCTGACGCCCACCCATGCCTCCTCAGGTACccccctgc
ccccacagctcctctcctgtgccttgtttcccagccatgcgttctcctct
ataaatacccgctctggtatttggggttggcagctgttgctgccagggag
atggttgggttgacatgcGGCTCCTGACAAAACACAAACCCCTGGTGTGT
> GLUT4 rat enhancer, -480 to -420
ccttgggtcatctccttgtgggaagcgagtcgcggaccctttaaggctcc
atctcccttgccctcccccgcctgggacaggctgggacacccgggacctg
acatttggcggaGCCTAACGtgggagctaaaaatagccattccgggttac
ttcggggcattgtttcTGACacacacacacacacacacacacacacacac     
> MRF4 promoter, rat, -61 to +71
TGATGCTCCAtgacagctagaagttggattgagtttcagtagctactata
tataaagctgggtcgacttatgtcaccgcactaattaaatgccatctggg
tggctcctctgggttttttgagtccatcacccagttcagatcAGTCAGAG
GCCAAGGAGGAGAACATGATGATGGACCTTTTTGAAACTGGCTCCTATTT
> myogenin promoter, mouse, -184 to +18
ctgcagggtggggtgggggcaaaaggagagggaaggggaatcacatgtaa
tccactggaaacgtcttgatgtgcagcaacagcttagaggggggctcagg
tttctgtggcgttggctatatttatctctgggttcatgccagcagggagg
gtttaaatggcacccagcagttggtgtgaggggctgcgggagcttgggggcc
> MLC1/3 3' enhancer, rat
GggacctaaccTTATTAAATTACCATGTGTGAACCGCTCATAACTCAAGT
CGCAGCAGGTGCAAAAATGGAGCTGCGCAGGCAGAAGAGTGATCGTCATT
TTTAAAATCCCCACCAGCTGGCGAAGCAACAGGTGCCTAATTCCTCATCT
TTTAAAAATAACTTTTcaaaagccTGTGCTGTATAAGCAAATATTTTCAA
> TnI slow human upstream enhancer, -1041 to -871
cgaggCCTCTCTCTGGGCCTCTGAGAGGGTCAGTGTCCTGCCCCAACCCA
TGAGATGACAGACTATAATAGCCACAGGATTAACATAGCAGGCATTGTCT
TTCTCTGACTATAGGGTGGGTATTATGTGTTCATCAACCATCCTAAAAAT
ACCCGGTAAACAGGTGCAGCCCCTGTggctccagtcccctgggatctgtt
> TnI slow human first intron enhancer
ggcagagccctaagaataagcagctgcccataaaatctaataccagccaa
gcatctcaggaattcatggattgtctccatacccctccctctgtgcccca
gcatgacagctgagactctggggtcacactacacctccacctcctccacc
ccagccttaccctcccctggtggcggaggcagaggtggagggaggcc
> TnI slow human promoter, -95 to +12
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaagggtgggaggg
aggaggggcagcaggagggggcagtgggtctgttctatttttaccagcca
gttgctgctggacacagttttcatagcctcccctcggctctgcccctcac
agtctgcagtctacggcgaggcacaggccagcccagctccacgaggactg
> cardiac troponin T (cTnT) chicken promoter
tgggcttatatgggctcctgtgggggaagggggagcacggagggggccgg
ggccgctgcTGCCAAAATAGCAGCTCACAAGTGTTGCATTCCTCTCTGGG
CGCCGGGCACATTCCTGCTGCTCTGCCCGCCCCGGGGTGGGCGCCGGGGG
GACCTTAAAgcctctgccccccaaggagcccttcccagatagccgccggc
> AChR beta, rat promoter/enhancer, 
aagatgatttatacaaccagtgttatctgatatttgtgagtggagggcga
ctgcaattgctccgggcgcgaccaagtccggagggtggggcgggtgggct
ggcagctggtcccccgacaacaggtgcacattcctgggcgcctcgtcact
tcccctggcctggcggcctcggccgctcttcggacaaacccactgagcga
> AChR beta, mouse promoter/enhancer
tgctccgggcgggaccaagtcccgagggcggggcgggtgggctggcgtct
ggtcccccgacaacaggtgcacattcctgggcgcctcgtcacttcccctg
gcctgaggcgctatccggacaaacttcactgagcgaaagaggcagggcat
ggccttaggggcgctgcttctgcttctaggggtactcgggacgcccctcg
> Hamster beta-myosin heavy chain gene, 
GGTGgtcgttgtcAGCTTACTCTGCAGTGAGCTGTGGAATGTAAGAGATA
TTTTCTGTTC GCTTTGAGCCACCCCACCCCTTGGAACTCAGACCCTGAA
CATGccatgCCACAACAATGACGACCACTTCCAATTGTTTCCTGGCTGGG
GGGGGAGGGGGAGCACTGTTTGGACAAGGGAAGGGGGGGAGTCGAGGGGG
> x16291 Rat 5'promoter of beta myosin heavy chain.
gcagggccctcttgcagtccagccagggccctgcctgcttgaggtcatgg
tggtCGTGGTCAGCACACCATCTAGTGAGCTGTGGAATGTAAGGGATATT
TTTGCTTCACTTTGAGCCACCCCACCCCCTGGAACTCAGACCCTGAACAT
GCCATaccacaacaatgacgcccacttccaattgtttcctagctggggga
> Human m25133 gene for cardiac beta myosin heavy chain.
gtgccctgcgggagagccaggacattggctgcctgtggtcttggtggtcg
tggtcagttCCCTCTCCTGCCAGCTGTGGAATGTGAGGCCTGGCCTGGGA
GATATTTTTGCTGCACTTTGAGCCACCCCGCCCCCTGGAACTCAGACCCT
GCACAGTCCAtgccataacaatgacgaccacttccaattgtttcctagct
> Mouse l07306 beta-myosin heavy chain gene, 5' promoter  
ggccttgcctgcttgaggtcgtggtggtcgTGGTCAGCTTACTCTCTAGT
GAGCCGTGGAATGTTAGAGATATTTTTGCTTCACTTTAAGCTGCCCCACC
CCCTGGAACTCAGACCCTGAACATGCCATGccacaacaatgacgaccact
tccaattgtttcctagctgggggaggaggggggagtactgtttggacaag  
>  Human alpha-MHC gene for myosin heavy chain.
cggtgtgagaaggtccagtcttCCCAGCTATCTGCTCATCAGCCCTTTGA
AGGGGAGGAATGTGCCCAAGGACTAAAAAAAGGCCGTGGAGCCAGAGAGG
CTGGGGCAGCAGACCTTTCAAGggcaaatcaggggccctgctgtcctcct
gtcacctccagagccaaaggatcaaaggaggaggagccaggagggagaga
> Hamster alpha-cardiac myosin heavy chain gene exons 
CTAtggtcctgTCTCCCTCCTTCTGGCCATCGGGCCTTTGGGGAGGAGGA
ATGTTGCCCAAGGACTAAAAAAAGGCCCTGGAGCCAGAGGGGCTAGggca
acAGACCTTTCATGGGCAAACCTTGGGGCTCTGCTGTCCTCCTGTCACCT
CCAGAGCCAAGGGATCAAAGGAGGAGGAGCCAGGAGAGAAGTGGGAGGGA
>  Mus musculus alpha cardiac myosin heavy chain , 5' end.
ttaaaaataactgaggtaagggcctgggtaggggaggtggtgtgaGACGC
TCCTGTCTCTCCTCTATCTGCCCATCGGCCCTTTGGGGAGGAGGAATGTG
CCCAAGGACTAAAAAAAGGCCATGGAGCCAGAGGGGCGAGGGCAAcagac
ctttcatgggcaaaccttggggccctgctgtcctcctgtcacctccagag
>  Rat cardiac alpha-myosin heavy chain gene, 5' flank.
ctttcagattaaaaataactaaggtaagggccatgtgggtaggggaggtg
gtgtgagACGGTCCTGTCTCTCCTCTATCTGCCCATCGGCCCTTTGGGGA
GGAGGAAATGTGCCCAAGGACTAAAAAAGGCCTGGAGCCAGAGGGGCTAG
GGCTAAGcagacctttcatgggcaaacctcagggctgctgtcctcctgtc
>  Rat skeletal muscle alpha-actin gene, complete cds.
tggtcagtgcaggagacccgggcgggacccaggctgagaagcagccgaag
ggaCTCTAGTGCCCAACACCCAAATATGGCTTGGGAAGGGCAACAACATT
CCTTCGGGCGGTGTGGAGAGCTCAGGACTATATAAAAACCTGAGGCTAGG
GACaggcggtcacacggacgtgaagcctcacttcctaccctcggcaccag
> Cow alpha skeletal actin precursor gene, complete cds.
acctgggctcaggccaggcctctccttctttggtcagcgcaggggacccg
ggcggggacccaggccttgaactggtcgggggagggggcTCTAGTGCCCA
ACACCCAAATATGGCTCGAGAAGGGGAGCGACATCCTGCGGGGCGGCGCG
AGGGGAGCGCCCGAGGGCTATATAAAACCTGAGCAGGGGgacgagcggcc
> Pig skeletal alpha actin gene, complete cds.
caggccgctccttctttggtcagtcacaggggaccccggggcccaggccg
ctaagccgggggaggggGCTCCAGTGCCAACACCCAAATATGGCTCGAGA
AGGGGAGCGACATTCCAGTGAGGCGCTCGGGGGGAGAACCCGCGGGCTAT
ATAAAACCTGAGCGTGGggaccagcggccaccgcagcgacagcgccgaga
>  Human skeletal alpha-actin gene, complete cds.
gcgggggcccaggccgcgaaccggccgagggagggggctCTAGTGCCCAA
CACCCAAATATGGCTCGAGAAGGGCAGCGACATTCCTGCGGGGTGGCGCG
GAGGGAATCGCCCGCGGGCTATATAAAACCTGAGCAGAGGgacaagcggc
caccgcagcggacagcgccaagtgaagcctcgcttcccctccgcggcgac
> Chicken skeletal alpha-actin gene 5'
gcccggggggcccggcagacgctccttatacggcccggcctcgctcacct
gggccgcggccaggagcgccttctttgggcagcgcggggcCGGGGCCGCG
CCGGGCCCGACACCCAAATATGGCGACGGCCGGGGCCGCATTCCTGGGGG
CCGGGCGGTGCTCCCGCCCGCCTCGATAAAAGGCTCCGGGgccggcggcg
>  Mouse skeletal alpha-actin gene,
agggccagtcctctccttctttggtcagtgcaggagacccgggcggggac
ccaggctgagaaccagccgaaggaagggACTCTAGTGCCCGACACCCAAA
TATGGCTTGGGAAGGGCAGCAACATTCTTCGGGGCGGTGTGGGGAGAGCT
CCCGGGACTATATAAAAACCTGTGCAAGgggacaggcggtcacacggacg