REPORT
Input file: /home/ggrant/greg.grant.org/pagetest/doc/4_class_testdata_header2.txt

Number of groups provided by the input file, including the reference group: 2.

Input data is unlogged.
Applying algorithm to logged data.
Stat: t-statistic.
Number of replicates for group 0: 4.
Number of replicates for group 1: 4.

Min presence required for group 0: 3.
Min presence required for group 1: 3.

Level confidence for group 1: .8.

t-stat tuning parameter for group 1: 0.0516019581403056

Statistic range for group 1: [-2.3225235934057,13.6775047669547].

Lower cutratio for group 1: -2.3248461169991.
Upper cutratio for group 1: 2.25678828654753.
Levels for group 1:   0, 1, 2, 3, 4, 5, 6
 
For group 1 there are 48 up symbols and 0 down symbols.
 
 
Upregulation
 
 
 Level 6 has been attached to the following gene tag:
 
tag
confidence that this gene is upregulated
means
statistic
tag information
intensities
20 0.9859.8791, 20.0825 13.6775 Dner  
I
 
 Level 5 has been attached to the following gene tag:
 
tag
confidence that this gene is upregulated
means
statistic
tag information
intensities
40 0.98520.4795, 51.4891 12.3037 IMAGE=6434243  
I
 
 Level 4 has been attached to the following 3 gene tags:
 
tag
confidence that this gene is upregulated
means
statistic
tag information
intensities
41 0.98520.8388, 47.7951 10.8863 IMAGE=6433835  
I
11 0.9851.0822, 2.5823 9.719 Pccb  
I
10 0.9850.9852, 2.8826 9.301 Ngfg  
I
 
 Level 3 has been attached to the following gene tag:
 
tag
confidence that this gene is upregulated
means
statistic
tag information
intensities
21 0.9859.9599, 19.082 7.3594 IMAGE=6435011  
I
 
 Level 2 has been attached to the following 9 gene tags:
 
tag
confidence that this gene is upregulated
means
statistic
tag information
intensities
12 0.9830.9495, 2.3183 6.3586 GENBANK=CF623011  
I
42 0.98317.7985, 45.8775 6.1194 Maged1  
I
0 0.9831.0034, 2.132 5.9865 Whsc1  
I
15 0.9830.7338, 2.1352 5.7023 Srp19  
I
31 0.989.7138, 16.2643 5.4315 Msh6  
I
30 0.97910.1679, 14.9198 5.3085 B430306D02Rik  
I
860 0.9797.22, 15.9014 5.2593 2900064A13Rik  
I
5 0.9781.0944, 2.4234 5.1453 Prkcsh  
I
16 0.9690.6644, 3.0785 4.7079 Ctgf  
I
 
 Level 1 has been attached to the following 33 gene tags:
 
tag
confidence that this gene is upregulated
means
statistic
tag information
intensities
474 0.9565.2977, 14.3886 4.1336 IMAGE=6433685  
I
23 0.95310.3313, 20.8301 3.9999 IMAGE=6433811  
I
43 0.95321.9075, 48.5109 3.9575 Ap4s1  
I
46 0.95317.5108, 50.3646 3.8849 Usp11  
I
466 0.9511.0082, 2.1378 3.8047 Psma5  
I
22 0.95110.2375, 20.8024 3.786 IMAGE=6434219  
I
26 0.9519.8851, 21.4898 3.7641 1500006O09Rik  
I
14 0.9351.0373, 2.6912 3.5447 Mapk6  
I
4 0.9350.9283, 2.3635 3.5366 IMAGE=6434195  
I
24 0.92811.1767, 15.8897 3.416 blank614  
I
34 0.9249.1169, 15.9483 3.3257 Msn  
I
19 0.9241.0084, 3.3476 3.3128 Rpl22  
I
13 0.9241.0607, 2.1614 3.2818 Pik4cb  
I
861 0.92415.8008, 24.7041 3.2298 Rfx1  
I
33 0.9249.2825, 12.8354 3.2253 Sgne1  
I
3 0.9241.0106, 1.8738 3.2003 IMAGE=6434987  
I
27 0.92113.2173, 25.072 3.1145 Stratagene Control 9.6  
I
45 0.9222.0023, 50.5311 3.0678 blank1452  
I
9 0.921.0018, 1.8633 3.0457 Bax  
I
1 0.9131.026, 1.821 2.9794 IMAGE=6435995  
I
296 0.9096.1655, 9.7134 2.9277 Alas2  
I
29 0.90110.3925, 23.3771 2.8289 C030010B13Rik  
I
17 0.9011.0349, 3.5007 2.8148 Sdccag33  
I
18 0.9011.1159, 2.9027 2.8019 Efna1  
I
44 0.90119.4527, 48.6631 2.7997 D11Moh34  
I
643 0.8330.3855, 0.5491 2.4226 G1p2  
I
214 0.8234.9331, 7.4299 2.382 Rrbp1  
I
32 0.8239.7258, 13.6088 2.3673 Amfr  
I
47 0.82316.41, 39.1217 2.3464 Twsg1  
I
587 0.82330.0298, 45.2201 2.3348 Aamp  
I
527 0.8230.3426, 0.5154 2.3346 Sf3b2  
I
481 0.8238.7599, 11.7153 2.3294 Pmscl2  
I
734 0.8192.1492, 3.6609 2.3214 1110064N10Rik  
I