REPORT
Input file: /home/ggrant/greg.grant.org/pagetest/doc/4_class_testdata_header1.txt

Number of groups provided by the input file, including the reference group: 4.

Input data is unlogged.
Applying algorithm to logged data.
Stat: t-statistic.
Number of replicates for group 0: 4.
Number of replicates for group 1: 4.
Number of replicates for group 2: 4.
Number of replicates for group 3: 4.

Min presence required for group 0: 3.
Min presence required for group 1: 3.
Min presence required for group 2: 3.
Min presence required for group 3: 3.

Level confidence for group 1: .8.
Level confidence for group 2: .8.
Level confidence for group 3: .8.

t-stat tuning parameter for group 1: 0.0516019581403056
t-stat tuning parameter for group 2: 0.256034390509347
t-stat tuning parameter for group 3: 1.70277432543274e-05

Statistic range for group 1: [-2.3225235934057,13.6775047669547].
Statistic range for group 2: [-3.23044277780101,6.44746927878786].
Statistic range for group 3: [-6.01881252958201,53.1011195381496].

Lower cutratio for group 1: -2.3248461169991.
Upper cutratio for group 1: 2.25678828654753.
Lower cutratio for group 2: -2.19024020334909.
Upper cutratio for group 2: 1.44423311844848.
Lower cutratio for group 3: -6.02483134211159.
Upper cutratio for group 3: 3.50467388951788.

Levels for group 1:   0, 1, 2, 3, 4, 5, 6
Levels for group 2:   -1, 0, 1, 2, 3, 4
Levels for group 3:   0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15
Patterns
6,-1,1
5,2,6
4,3,15
4,3,14
4,1,3
3,-1,1
2,4,7
2,4,6
2,4,3
2,3,4
2,2,6
2,2,0
2,1,2
2,1,0
1,4,2
1,3,4
1,2,6
1,2,2
1,2,1
1,1,3
1,1,2
1,1,1
1,1,0
1,0,1
1,0,0
1,-1,0
0,3,1
0,3,0
0,2,0
0,1,1
0,1,0
0,0,1
0,-1,0



For group 1 there are 48 up symbols and 0 down symbols.
For group 2 there are 40 up symbols and 6 down symbols.
For group 3 there are 34 up symbols and 0 down symbols.
 
 
 
Pattern 6,-1,1 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
20 0.985, 0.838, 0.8649.8791, 20.0825, 5.1711, 20.4241 13.6775, -3.2304, 4.0987 Dner  
I
 
 
Pattern 5,2,6 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
40 0.985, 0.981, 0.98520.4795, 51.4891, 43.9309, 47.7935 12.3037, 3.181, 23.7391 IMAGE=6434243  
I
 
 
Pattern 4,3,15 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
10 0.985, 0.985, 0.9850.9852, 2.8826, 3.8071, 6.743 9.301, 5.5431, 53.1011 Ngfg  
I
 
 
Pattern 4,3,14 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
11 0.985, 0.985, 0.9851.0822, 2.5823, 3.5771, 6.7229 9.719, 5.2739, 49.2599 Pccb  
I
 
 
Pattern 4,1,3 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
41 0.985, 0.9, 0.98320.8388, 47.7951, 34.0567, 50.5507 10.8863, 1.7824, 11.5308 IMAGE=6433835  
I
 
 
Pattern 3,-1,1 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
21 0.985, 0.838, 0.9529.9599, 19.082, 4.8132, 22.0809 7.3594, -2.9499, 6.2049 IMAGE=6435011  
I
 
 
Pattern 2,4,7 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
15 0.983, 0.985, 0.9850.7338, 2.1352, 3.3114, 6.3463 5.7023, 6.0341, 25.6591 Srp19  
I
 
 
Pattern 2,4,6 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
30 0.979, 0.985, 0.98510.1679, 14.9198, 35.5953, 19.8793 5.3085, 6.0961, 24.2326 B430306D02Rik  
I
 
 
Pattern 2,4,3 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
31 0.98, 0.985, 0.9839.7138, 16.2643, 35.255, 19.6645 5.4315, 6.099, 11.5096 Msh6  
I
 
 
Pattern 2,3,4 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
16 0.969, 0.985, 0.9830.6644, 3.0785, 4.1313, 6.0435 4.7079, 5.0437, 17.1665 Ctgf  
I
 
 
Pattern 2,2,6 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
12 0.983, 0.984, 0.9850.9495, 2.3183, 3.6261, 6.7576 6.3586, 3.8863, 21.7245 GENBANK=CF623011  
I
 
 
Pattern 2,2,0 has been attached to the following 2 gene tags:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
0 0.983, 0.983, 01.0034, 2.132, 2.3153, 0.9331 5.9865, 3.2931, -1.6906 Whsc1  
I
5 0.978, 0.984, 01.0944, 2.4234, 3.3729, 1.0982 5.1453, 3.5117, 0.0195 Prkcsh  
I
 
 
Pattern 2,1,2 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
42 0.983, 0.977, 0.96417.7985, 45.8775, 41.1821, 44.991 6.1194, 2.7697, 7.146 Maged1  
I
 
 
Pattern 2,1,0 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
860 0.979, 0.934, 07.22, 15.9014, 13.6803, 11.3813 5.2593, 1.9661, 0.7365 2900064A13Rik  
I
 
 
Pattern 1,4,2 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
33 0.924, 0.985, 0.9749.2825, 12.8354, 36.0187, 19.1795 3.2253, 6.4474, 8.0801 Sgne1  
I
 
 
Pattern 1,3,4 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
32 0.823, 0.985, 0.9839.7258, 13.6088, 32.9069, 21.035 2.3673, 5.3586, 14.5839 Amfr  
I
 
 
Pattern 1,2,6 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
13 0.924, 0.984, 0.9851.0607, 2.1614, 3.5994, 7.3388 3.2818, 3.911, 21.2109 Pik4cb  
I
 
 
Pattern 1,2,2 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
18 0.901, 0.984, 0.9791.1159, 2.9027, 3.8779, 4.9172 2.8019, 3.3596, 9.031 Efna1  
I
 
 
Pattern 1,2,1 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
34 0.924, 0.984, 0.9129.1169, 15.9483, 30.2998, 21.3199 3.3257, 3.819, 4.9773 Msn  
I
 
 
Pattern 1,1,3 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
14 0.935, 0.975, 0.9831.0373, 2.6912, 3.1637, 6.9417 3.5447, 2.6008, 11.9062 Mapk6  
I
 
 
Pattern 1,1,2 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
44 0.901, 0.885, 0.96419.4527, 48.6631, 34.4612, 65.223 2.7997, 1.6974, 7.1937 D11Moh34  
I
 
 
Pattern 1,1,1 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
17 0.901, 0.91, 0.9431.0349, 3.5007, 2.8599, 8.53 2.8148, 1.8203, 5.6871 Sdccag33  
I
 
 
Pattern 1,1,0 has been attached to the following 5 gene tags:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
4 0.935, 0.961, 00.9283, 2.3635, 2.5891, 0.892 3.5366, 2.2476, 0.0267 IMAGE=6434195  
I
19 0.924, 0.976, 01.0084, 3.3476, 3.4439, 5.5079 3.3128, 2.7073, 3.335 Rpl22  
I
3 0.924, 0.977, 01.0106, 1.8738, 2.6203, 1.1562 3.2003, 2.7707, 2.001 IMAGE=6434987  
I
9 0.92, 0.884, 01.0018, 1.8633, 2.0973, 0.9836 3.0457, 1.6862, -0.3282 Bax  
I
1 0.913, 0.97, 01.026, 1.821, 1.9825, 0.9115 2.9794, 2.4364, -1.6762 IMAGE=6435995  
I
 
 
Pattern 1,0,1 has been attached to the following 6 gene tags:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
474 0.956, 0, 0.8265.2977, 14.3886, 11.648, 11.5034 4.1336, 1.2685, 3.6678 IMAGE=6433685  
I
43 0.953, 0, 0.96321.9075, 48.5109, 35.1731, 50.14 3.9575, 1.2818, 7.0092 Ap4s1  
I
46 0.953, 0, 0.82617.5108, 50.3646, 40.3165, 52.1667 3.8849, 1.1218, 3.6358 Usp11  
I
466 0.951, 0, 0.8261.0082, 2.1378, 1.2807, 1.8716 3.8047, 0.5694, 3.6458 Psma5  
I
27 0.921, 0, 0.88113.2173, 25.072, 6.118, 22.3863 3.1145, -1.7952, 4.4222 Stratagene Control 9.6  
I
45 0.92, 0, 0.93822.0023, 50.5311, 36.8837, 54.8773 3.0678, 0.9159, 5.5333 blank1452  
I
 
 
Pattern 1,0,0 has been attached to the following 11 gene tags:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
26 0.951, 0, 09.8851, 21.4898, 5.6868, 17.1033 3.7641, -1.4656, 1.3998 1500006O09Rik  
I
861 0.924, 0, 015.8008, 24.7041, 17.9656, 20.7313 3.2298, 0.1943, 2.3224 Rfx1  
I
296 0.909, 0, 06.1655, 9.7134, 8.29, 7.527 2.9277, 1.02, 1.0855 Alas2  
I
29 0.901, 0, 010.3925, 23.3771, 5.8524, 18.1922 2.8289, -1.3917, 2.1413 C030010B13Rik  
I
643 0.833, 0, 00.3855, 0.5491, 0.458, 0.3364 2.4226, 0.1546, -0.9658 G1p2  
I
214 0.823, 0, 04.9331, 7.4299, 6.9172, 5.6847 2.382, 1.1577, 1.0469 Rrbp1  
I
47 0.823, 0, 016.41, 39.1217, 36.1118, 27.1512 2.3464, 1.0937, 2.1631 Twsg1  
I
587 0.823, 0, 030.0298, 45.2201, 41.059, 45.7892 2.3348, 1.1074, 3.034 Aamp  
I
527 0.823, 0, 00.3426, 0.5154, 0.3916, 0.4371 2.3346, 0.2972, 1.1256 Sf3b2  
I
481 0.823, 0, 08.7599, 11.7153, 9.8938, 10.0425 2.3294, 0.3343, 0.8567 Pmscl2  
I
734 0.819, 0, 02.1492, 3.6609, 1.8601, 1.7561 2.3214, -0.3338, -0.8747 1110064N10Rik  
I
 
 
Pattern 1,-1,0 has been attached to the following 3 gene tags:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
23 0.953, 0.838, 010.3313, 20.8301, 5.0079, 15.8045 3.9999, -2.5315, 1.9624 IMAGE=6433811  
I
22 0.951, 0.838, 010.2375, 20.8024, 4.8496, 9.3208 3.786, -2.4342, -0.9065 IMAGE=6434219  
I
24 0.928, 0.838, 011.1767, 15.8897, 5.1683, 15.643 3.416, -2.3424, 1.7974 blank614  
I
 
 
Pattern 0,3,1 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
36 0, 0.985, 0.86410.959, 12.6532, 41.1352, 19.9153 0.308, 5.7706, 4.1106 2610528O22Rik  
I
 
 
Pattern 0,3,0 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
2 0, 0.984, 00.9241, 1.573, 2.7597, 0.9972 1.9381, 4.499, 0.4799 IMAGE=6435587  
I
 
 
Pattern 0,2,0 has been attached to the following 2 gene tags:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
37 0, 0.978, 010.6729, 16.1066, 31.8769, 14.3208 0.9333, 2.9322, 1.478 IMAGE=5938885  
I
35 0, 0.984, 010.8548, 16.6296, 35.87, 18.0867 0.8648, 3.3308, 2.5186 Cdkn1c  
I
 
 
Pattern 0,1,1 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
998 0, 0.839, 0.8527.0051, 11.1867, 13.9033, 15.0297 1.8293, 1.546, 3.9303 Nelf  
I
 
 
Pattern 0,1,0 has been attached to the following 9 gene tags:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
642 0, 0.815, 00.1736, 0.2664, 0.3271, 0.2914 0.9467, 1.4738, 1.6092 Pkp4  
I
6 0, 0.954, 00.9949, 1.4245, 2.91, 0.9376 0.7674, 2.1441, 0.0979 IMAGE=5648936  
I
7 0, 0.947, 00.9187, 1.1023, 2.4424, 0.9975 0.6079, 2.0684, 0.1631 1200009C21Rik  
I
48 0, 0.823, 019.156, 21.2216, 43.8652, 47.5196 0.3826, 1.4957, 2.8793 AU015035  
I
39 0, 0.972, 010.591, 13.2626, 31.8579, 18.5269 -0.2612, 2.465, 1.5286 Rqcd1  
I
147 0, 0.826, 011.8572, 11.5772, 20.3411, 16.0634 -0.3318, 1.5096, 0.5577 Vnn1  
I
8 0, 0.977, 00.9055, 0.8569, 3.0475, 1.1561 -0.5142, 2.8488, 1.0084 D13Wsu123e  
I
38 0, 0.976, 09.9724, 8.8146, 31.4883, 16.3173 -0.6157, 2.6755, 1.7488 GENBANK=BM875999  
I
49 0, 0.877, 018.6843, 12.1095, 46.5002, 45.3385 -1.1689, 1.6551, 3.1452 Cks1  
I
 
 
Pattern 0,0,1 has been attached to the following 6 gene tags:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
148 0, 0, 0.83712.6993, 18.1739, 17.1601, 22.3332 1.5827, 0.6631, 3.8175 Atp5b  
I
936 0, 0, 0.86510.258, 10.4636, 10.2254, 10.6193 0.3609, -0.0176, 4.2464 1110020B03Rik  
I
701 0, 0, 0.85114.5079, 14.6298, 14.3864, 14.6948 0.2115, -0.0453, 3.9083 Nup160  
I
717 0, 0, 0.9111.5579, 11.6013, 11.6084, 11.7167 0.0906, 0.0236, 4.8786 Creld1  
I
380 0, 0, 0.9127.0857, 6.6562, 7.3633, 10.3238 -0.4265, -0.0614, 5.0144 Fxyd6  
I
364 0, 0, 0.8651.4302, 1.3352, 1.4294, 1.5979 -0.9283, -0.0339, 4.2737 0610023A07Rik  
I
 
 
Pattern 0,-1,0 has been attached to the following gene tag:
 
tag
confidences that this gene is differentially expressed in the respective groups
means
statistics
tag information
intensities
25 0, 0.838, 010.9003, 18.3909, 4.7809, 16.1226 1.8395, -2.6287, 0.4203 Dmbt1  
I