PaGE results for PaGE-results-for-4class

REPORT

Input file: /home/ggrant/greg.grant.org/pagetest/doc/4_class_testdata_header1.txt

Number of groups provided by the input file, including the reference group: 4.

Input data is unlogged.
Applying algorithm to logged data.
Stat: t-statistic.
Number of replicates for group 0: 4.
Number of replicates for group 1: 4.
Number of replicates for group 2: 4.
Number of replicates for group 3: 4.

Min presence required for group 0: 3.
Min presence required for group 1: 3.
Min presence required for group 2: 3.
Min presence required for group 3: 3.

Level confidence for group 1: .8.
Level confidence for group 2: .8.
Level confidence for group 3: .8.

t-stat tuning parameter for group 1: 0.0516019581403056
t-stat tuning parameter for group 2: 0.256034390509347
t-stat tuning parameter for group 3: 1.70277432543274e-05

Statistic range for group 1: [-2.3225235934057,13.6775047669547].
Statistic range for group 2: [-3.23044277780101,6.44746927878786].
Statistic range for group 3: [-6.01881252958201,53.1011195381496].

Lower cutratio for group 1: -2.3248461169991.
Upper cutratio for group 1: 2.25678828654753.
Lower cutratio for group 2: -2.19024020334909.
Upper cutratio for group 2: 1.44423311844848.
Lower cutratio for group 3: -6.02483134211159.
Upper cutratio for group 3: 3.50467388951788.

Levels for group 1:   0, 1, 2, 3, 4, 5, 6
Levels for group 2:   -1, 0, 1, 2, 3, 4
Levels for group 3:   0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15

Patterns
6,-1,1
5,2,6
4,3,15
4,3,14
4,1,3
3,-1,1
2,4,7
2,4,6
2,4,3
2,3,4
2,2,6
2,2,0
2,1,2
2,1,0
1,4,2
1,3,4
1,2,6
1,2,2
1,2,1
1,1,3
1,1,2
1,1,1
1,1,0
1,0,1
1,0,0
1,-1,0
0,3,1
0,3,0
0,2,0
0,1,1
0,1,0
0,0,1
0,-1,0

For group 1 there are 48 up symbols and 0 down symbols.
For group 2 there are 40 up symbols and 6 down symbols.
For group 3 there are 34 up symbols and 0 down symbols.

Pattern 6,-1,1 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
20	0.985, 0.838, 0.864	9.8791, 20.0825, 5.1711, 20.4241	13.6775, -3.2304, 4.0987	Dner	I
Pattern 5,2,6 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
40	0.985, 0.981, 0.985	20.4795, 51.4891, 43.9309, 47.7935	12.3037, 3.181, 23.7391	IMAGE=6434243	I
Pattern 4,3,15 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
10	0.985, 0.985, 0.985	0.9852, 2.8826, 3.8071, 6.743	9.301, 5.5431, 53.1011	Ngfg	I
Pattern 4,3,14 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
11	0.985, 0.985, 0.985	1.0822, 2.5823, 3.5771, 6.7229	9.719, 5.2739, 49.2599	Pccb	I
Pattern 4,1,3 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
41	0.985, 0.9, 0.983	20.8388, 47.7951, 34.0567, 50.5507	10.8863, 1.7824, 11.5308	IMAGE=6433835	I
Pattern 3,-1,1 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
21	0.985, 0.838, 0.952	9.9599, 19.082, 4.8132, 22.0809	7.3594, -2.9499, 6.2049	IMAGE=6435011	I
Pattern 2,4,7 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
15	0.983, 0.985, 0.985	0.7338, 2.1352, 3.3114, 6.3463	5.7023, 6.0341, 25.6591	Srp19	I
Pattern 2,4,6 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
30	0.979, 0.985, 0.985	10.1679, 14.9198, 35.5953, 19.8793	5.3085, 6.0961, 24.2326	B430306D02Rik	I
Pattern 2,4,3 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
31	0.98, 0.985, 0.983	9.7138, 16.2643, 35.255, 19.6645	5.4315, 6.099, 11.5096	Msh6	I
Pattern 2,3,4 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
16	0.969, 0.985, 0.983	0.6644, 3.0785, 4.1313, 6.0435	4.7079, 5.0437, 17.1665	Ctgf	I
Pattern 2,2,6 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
12	0.983, 0.984, 0.985	0.9495, 2.3183, 3.6261, 6.7576	6.3586, 3.8863, 21.7245	GENBANK=CF623011	I
Pattern 2,2,0 has been attached to the following 2 gene tags:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
0	0.983, 0.983, 0	1.0034, 2.132, 2.3153, 0.9331	5.9865, 3.2931, -1.6906	Whsc1	I
5	0.978, 0.984, 0	1.0944, 2.4234, 3.3729, 1.0982	5.1453, 3.5117, 0.0195	Prkcsh	I
Pattern 2,1,2 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
42	0.983, 0.977, 0.964	17.7985, 45.8775, 41.1821, 44.991	6.1194, 2.7697, 7.146	Maged1	I
Pattern 2,1,0 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
860	0.979, 0.934, 0	7.22, 15.9014, 13.6803, 11.3813	5.2593, 1.9661, 0.7365	2900064A13Rik	I
Pattern 1,4,2 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
33	0.924, 0.985, 0.974	9.2825, 12.8354, 36.0187, 19.1795	3.2253, 6.4474, 8.0801	Sgne1	I
Pattern 1,3,4 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
32	0.823, 0.985, 0.983	9.7258, 13.6088, 32.9069, 21.035	2.3673, 5.3586, 14.5839	Amfr	I
Pattern 1,2,6 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
13	0.924, 0.984, 0.985	1.0607, 2.1614, 3.5994, 7.3388	3.2818, 3.911, 21.2109	Pik4cb	I
Pattern 1,2,2 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
18	0.901, 0.984, 0.979	1.1159, 2.9027, 3.8779, 4.9172	2.8019, 3.3596, 9.031	Efna1	I
Pattern 1,2,1 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
34	0.924, 0.984, 0.912	9.1169, 15.9483, 30.2998, 21.3199	3.3257, 3.819, 4.9773	Msn	I
Pattern 1,1,3 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
14	0.935, 0.975, 0.983	1.0373, 2.6912, 3.1637, 6.9417	3.5447, 2.6008, 11.9062	Mapk6	I
Pattern 1,1,2 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
44	0.901, 0.885, 0.964	19.4527, 48.6631, 34.4612, 65.223	2.7997, 1.6974, 7.1937	D11Moh34	I
Pattern 1,1,1 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
17	0.901, 0.91, 0.943	1.0349, 3.5007, 2.8599, 8.53	2.8148, 1.8203, 5.6871	Sdccag33	I
Pattern 1,1,0 has been attached to the following 5 gene tags:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
4	0.935, 0.961, 0	0.9283, 2.3635, 2.5891, 0.892	3.5366, 2.2476, 0.0267	IMAGE=6434195	I
19	0.924, 0.976, 0	1.0084, 3.3476, 3.4439, 5.5079	3.3128, 2.7073, 3.335	Rpl22	I
3	0.924, 0.977, 0	1.0106, 1.8738, 2.6203, 1.1562	3.2003, 2.7707, 2.001	IMAGE=6434987	I
9	0.92, 0.884, 0	1.0018, 1.8633, 2.0973, 0.9836	3.0457, 1.6862, -0.3282	Bax	I
1	0.913, 0.97, 0	1.026, 1.821, 1.9825, 0.9115	2.9794, 2.4364, -1.6762	IMAGE=6435995	I
Pattern 1,0,1 has been attached to the following 6 gene tags:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
474	0.956, 0, 0.826	5.2977, 14.3886, 11.648, 11.5034	4.1336, 1.2685, 3.6678	IMAGE=6433685	I
43	0.953, 0, 0.963	21.9075, 48.5109, 35.1731, 50.14	3.9575, 1.2818, 7.0092	Ap4s1	I
46	0.953, 0, 0.826	17.5108, 50.3646, 40.3165, 52.1667	3.8849, 1.1218, 3.6358	Usp11	I
466	0.951, 0, 0.826	1.0082, 2.1378, 1.2807, 1.8716	3.8047, 0.5694, 3.6458	Psma5	I
27	0.921, 0, 0.881	13.2173, 25.072, 6.118, 22.3863	3.1145, -1.7952, 4.4222	Stratagene Control 9.6	I
45	0.92, 0, 0.938	22.0023, 50.5311, 36.8837, 54.8773	3.0678, 0.9159, 5.5333	blank1452	I
Pattern 1,0,0 has been attached to the following 11 gene tags:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
26	0.951, 0, 0	9.8851, 21.4898, 5.6868, 17.1033	3.7641, -1.4656, 1.3998	1500006O09Rik	I
861	0.924, 0, 0	15.8008, 24.7041, 17.9656, 20.7313	3.2298, 0.1943, 2.3224	Rfx1	I
296	0.909, 0, 0	6.1655, 9.7134, 8.29, 7.527	2.9277, 1.02, 1.0855	Alas2	I
29	0.901, 0, 0	10.3925, 23.3771, 5.8524, 18.1922	2.8289, -1.3917, 2.1413	C030010B13Rik	I
643	0.833, 0, 0	0.3855, 0.5491, 0.458, 0.3364	2.4226, 0.1546, -0.9658	G1p2	I
214	0.823, 0, 0	4.9331, 7.4299, 6.9172, 5.6847	2.382, 1.1577, 1.0469	Rrbp1	I
47	0.823, 0, 0	16.41, 39.1217, 36.1118, 27.1512	2.3464, 1.0937, 2.1631	Twsg1	I
587	0.823, 0, 0	30.0298, 45.2201, 41.059, 45.7892	2.3348, 1.1074, 3.034	Aamp	I
527	0.823, 0, 0	0.3426, 0.5154, 0.3916, 0.4371	2.3346, 0.2972, 1.1256	Sf3b2	I
481	0.823, 0, 0	8.7599, 11.7153, 9.8938, 10.0425	2.3294, 0.3343, 0.8567	Pmscl2	I
734	0.819, 0, 0	2.1492, 3.6609, 1.8601, 1.7561	2.3214, -0.3338, -0.8747	1110064N10Rik	I
Pattern 1,-1,0 has been attached to the following 3 gene tags:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
23	0.953, 0.838, 0	10.3313, 20.8301, 5.0079, 15.8045	3.9999, -2.5315, 1.9624	IMAGE=6433811	I
22	0.951, 0.838, 0	10.2375, 20.8024, 4.8496, 9.3208	3.786, -2.4342, -0.9065	IMAGE=6434219	I
24	0.928, 0.838, 0	11.1767, 15.8897, 5.1683, 15.643	3.416, -2.3424, 1.7974	blank614	I
Pattern 0,3,1 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
36	0, 0.985, 0.864	10.959, 12.6532, 41.1352, 19.9153	0.308, 5.7706, 4.1106	2610528O22Rik	I
Pattern 0,3,0 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
2	0, 0.984, 0	0.9241, 1.573, 2.7597, 0.9972	1.9381, 4.499, 0.4799	IMAGE=6435587	I
Pattern 0,2,0 has been attached to the following 2 gene tags:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
37	0, 0.978, 0	10.6729, 16.1066, 31.8769, 14.3208	0.9333, 2.9322, 1.478	IMAGE=5938885	I
35	0, 0.984, 0	10.8548, 16.6296, 35.87, 18.0867	0.8648, 3.3308, 2.5186	Cdkn1c	I
Pattern 0,1,1 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
998	0, 0.839, 0.852	7.0051, 11.1867, 13.9033, 15.0297	1.8293, 1.546, 3.9303	Nelf	I
Pattern 0,1,0 has been attached to the following 9 gene tags:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
642	0, 0.815, 0	0.1736, 0.2664, 0.3271, 0.2914	0.9467, 1.4738, 1.6092	Pkp4	I
6	0, 0.954, 0	0.9949, 1.4245, 2.91, 0.9376	0.7674, 2.1441, 0.0979	IMAGE=5648936	I
7	0, 0.947, 0	0.9187, 1.1023, 2.4424, 0.9975	0.6079, 2.0684, 0.1631	1200009C21Rik	I
48	0, 0.823, 0	19.156, 21.2216, 43.8652, 47.5196	0.3826, 1.4957, 2.8793	AU015035	I
39	0, 0.972, 0	10.591, 13.2626, 31.8579, 18.5269	-0.2612, 2.465, 1.5286	Rqcd1	I
147	0, 0.826, 0	11.8572, 11.5772, 20.3411, 16.0634	-0.3318, 1.5096, 0.5577	Vnn1	I
8	0, 0.977, 0	0.9055, 0.8569, 3.0475, 1.1561	-0.5142, 2.8488, 1.0084	D13Wsu123e	I
38	0, 0.976, 0	9.9724, 8.8146, 31.4883, 16.3173	-0.6157, 2.6755, 1.7488	GENBANK=BM875999	I
49	0, 0.877, 0	18.6843, 12.1095, 46.5002, 45.3385	-1.1689, 1.6551, 3.1452	Cks1	I
Pattern 0,0,1 has been attached to the following 6 gene tags:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
148	0, 0, 0.837	12.6993, 18.1739, 17.1601, 22.3332	1.5827, 0.6631, 3.8175	Atp5b	I
936	0, 0, 0.865	10.258, 10.4636, 10.2254, 10.6193	0.3609, -0.0176, 4.2464	1110020B03Rik	I
701	0, 0, 0.851	14.5079, 14.6298, 14.3864, 14.6948	0.2115, -0.0453, 3.9083	Nup160	I
717	0, 0, 0.91	11.5579, 11.6013, 11.6084, 11.7167	0.0906, 0.0236, 4.8786	Creld1	I
380	0, 0, 0.912	7.0857, 6.6562, 7.3633, 10.3238	-0.4265, -0.0614, 5.0144	Fxyd6	I
364	0, 0, 0.865	1.4302, 1.3352, 1.4294, 1.5979	-0.9283, -0.0339, 4.2737	0610023A07Rik	I
Pattern 0,-1,0 has been attached to the following gene tag:
tag	confidences that this gene is differentially expressed in the respective groups	means	statistics	tag information	intensities
25	0, 0.838, 0	10.9003, 18.3909, 4.7809, 16.1226	1.8395, -2.6287, 0.4203	Dmbt1	I