PaGE Report

Total running time: 5.728 seconds
Input file: C:\greg\PaGE\doc\java\no_breakdown\2_class_testdata.txt
For condition 1 the level confidence is 0.75
Number of permutations: 70
Number of bins: 1000
For condition 1the T-statistic tuning parameter is 1.6202658
Reference group: 0

Number of conditions provided by the input file, including the reference condition: 2

Number of replicates for condition 0: 4
Number of replicates for condition 1: 4

T-range for condition 1: [-4.920,33.851]

Lower cut-T for condition 1: -4.925
Upper cut-T for condition 1: 3.249

For condition 1 there are 38 up symbols and 0 down symbols

Patterns
1
2
3
5
10

Pattern: 1
There are 26 gene Ids in this pattern:

Gene ID	Confidence Level	T value	Intensities
860	0.952	6.409	I
42	0.950	6.162	I
474	0.906	5.333	I
24	0.896	5.144	I
861	0.890	5.030	I
15	0.875	4.805	I
4	0.859	4.509	I
9	0.859	4.156	I
26	0.859	4.115	I
33	0.859	4.454	I
34	0.859	4.399	I
43	0.859	4.403	I
296	0.859	4.167	I
411	0.859	4.183	I
466	0.859	4.481	I
979	0.859	4.121	I
23	0.852	4.031	I
22	0.842	3.959	I
16	0.840	3.864	I
13	0.818	3.702	I
3	0.816	3.670	I
27	0.805	3.615	I
14	0.782	3.452	I
583	0.773	3.393	I
17	0.770	3.372	I
643	0.767	3.318	I

Pattern: 2
There are 7 gene Ids in this pattern:

Gene ID	Confidence Level	T value	Intensities
10	0.973	9.087	I
30	0.973	9.317	I
12	0.957	7.509	I
31	0.957	7.413	I
46	0.957	7.550	I
0	0.956	6.628	I
5	0.956	6.729	I

Pattern: 3
There are 2 gene Ids in this pattern:

Gene ID	Confidence Level	T value	Intensities
11	0.977	12.169	I
21	0.977	10.369	I

Pattern: 5
There are 2 gene Ids in this pattern:

Gene ID	Confidence Level	T value	Intensities
40	0.985	18.712	I
41	0.985	19.156	I

Pattern: 10
There are 1 gene Ids in this pattern:

Gene ID	Confidence Level	T value	Intensities
20	0.985	33.851	I