Welcome User:public
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RAD is a resource for gene expression studies, which stores highly curated MIAME-compliant studies (i.e. experiments) employing a variety of technologies such as filter arrays, 2-channel microarrays, Affymetrix chips, SAGE, MPSS and RT-PCR. Data are available for querying and downloading based on the MGED ontology, publications or genes. Both public and private studies (the latter viewable only by users having appropriate logins and permissions) are available from this website To access the project and group specific datasets including the private datasets, please click on the login tab. more >><< lessRAD (RNA Abundance Database) had undergone
major revamping in 2003 (described in
Manduchi et al. 2004). This was motivated by the ongoing
microarray standards effort by MGED, our
experience over the past couple of years with microarray studies, and a move to
place RAD within an integrated databases system,
GUS. The original version of RAD described in
Stoeckert et al. (2001) can still be seen and the sample studies
can still be queried using the RAD2 tab in the quick links of this page.
The new version of RAD is in use and holds also the gene expression studies
accessed through PlasmoDB and EPConDB.
The schema for RAD
can be viewed along with the other GUS namespaces through our schemaBrowser.
For an overview of the
different parts of RAD and the relationships to MIAME and MAGE, click here.
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Recent Publications |
View all ...
Gene expression profiling of a mouse model of pancreatic islet dysmorphogenesis., Wilding Crawford L, et al., PLoS ONE, 2008, 3, 2, e1611  | | Genetic variants regulating ORMDL3 expression contribute to the risk of childhood asthma., Moffatt MF, et al., Nature, 2007, 448, 7152, 470-3 | | Transcriptional profiling of stress response in cultured porcine islets., Dvorak CM, et al., Biochemical and biophysical research communications, 2007, 357, 1, 118-25 | | Gene expression in peripheral blood mononuclear cells from children with diabetes., Kaizer EC, et al., The Journal of clinical endocrinology and metabolism, 2007, 92, 9, 3705-11 | | Defining pancreatic endocrine precursors and their descendants., White P., et al., Diabetes, 2008, 57, 3, 654-68 | | Nonobese diabetic mice express aspects of both type 1 and type 2 diabetes., Chaparro RJ, et al., Proceedings of the National Academy of Sciences of the United States of America, 2006, 103, 33, 12475-80 |
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contact: RAD @ pcbi.upenn.edu |
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