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BlastView_beauty: Retrieves protein family and motif information from BEAUTY.


BlastView_beauty retrieves any available BEAUTY annotation from the Baylor College of Medicine Search Launcher. BEAUTY provides precomputed protein family and protein motif/domain information. Input to the component consists of the full BLAST bioWidget dataset. MatchSubjectBatch extracts the necessary sequence identifiers from the dataset and passes them to AnnotationService. The use of the MatchSubjectBatch adapter allows the BEAUTY annotation service to be used in contexts other than BlastView: one would simply provide a different adapter that extracts sequence identifiers from the application's data. Finally, SequenceMatchAnnotater takes the results of the BEAUTY search and converts them back into a form understood by BlastView; these results are output as a NewAnnotation event.

All queries should be directed to bioWidgets@www.cbil.upenn.edu
Contents by Brian Brunk, Jonathan Crabtree, Steve Fischer, Mark Gibson, Michael Sargent.