Summary of gbnr_neighbors


>CcruzaQ_815 has the following protein neighbors:
Sequence,   
  =>gnl|PID|e304504 (Z86109) unknown [Saccharomyces pastorianus]
            Length = 188
	    Score = 376 (132.4 bits), Expect = 5.5e-34, P = 5.5e-34
  =>gnl|PID|d1025726 (AB010946) AtRer1B [Arabidopsis thaliana]
            Length = 195
	    Score = 374 (131.7 bits), Expect = 9.0e-34, P = 9.0e-34
  =>gnl|PID|d1025725 (AB010945) AtRer1A [Arabidopsis thaliana]
            Length = 191
	    Score = 367 (129.2 bits), Expect = 6.0e-33, P = 6.0e-33
  =>sp|P25560|RER1_YEAST RER1 PROTEIN >pir||S50158 RER1 protein - yeast
            (Saccharomyces cerevisiae) >gnl|PID|d1006456 (D28552) Rer1p
            [Saccharomyces cerevisiae] >gnl|PID|e309040 (X59720) YCL001w,
            len:188 [Saccharomyces cerevisiae] >prf||2018181A RER1 gene
            [Saccharomyces cerevisiae] >prf||2206462A RER1 gene [Saccharomyces
            cerevisiae]
            Length = 188
	    Score = 366 (128.8 bits), Expect = 7.8e-33, P = 7.8e-33
  =>sp|P52879|YAF8_CAEEL HYPOTHETICAL 22.6 KD PROTEIN F46C5.8 IN CHROMOSOME II
            >gi|1006641 (Z54281) F46C5.8 [Caenorhabditis elegans]
            Length = 191
	    Score = 364 (128.1 bits), Expect = 1.4e-32, P = 1.4e-32
  =>gnl|PID|e339854 (AJ001421) Rer1 protein [Homo sapiens]
            Length = 196
	    Score = 337 (118.6 bits), Expect = 1.8e-29, P = 1.8e-29
  =>gi|2642434 (AC002391) putative Rer1 protein [Arabidopsis thaliana]
            Length = 211
	    Score = 337 (118.6 bits), Expect = 1.8e-29, P = 1.8e-29
  =>sp|Q10358|YDB5_SCHPO HYPOTHETICAL 22.4 KD PROTEIN C22E12.05C IN CHROMOSOME I
            >gi|1220280 (Z70043) unknown [Schizosaccharomyces pombe]
            Length = 184
	    Score = 309 (108.8 bits), Expect = 2.5e-26, P = 2.5e-26
  =>gi|897642 (M14820) ORF2 bases 1807-2850; first start codon at 2032; putative
           [Trypanosoma brucei]
           Length = 272
	    Score = 80 (28.2 bits), Expect = 0.024, Sum P(2) = 0.024
  =>pir||A05235 hypothetical protein A-288 - Trypanosoma brucei mitochondrion
            (SGC6)
            Length = 288
	    Score = 80 (28.2 bits), Expect = 0.029, Sum P(2) = 0.028
  =>pir||F22845 hypothetical protein 6 - Trypanosoma brucei mitochondrion (SGC6)
            Length = 347
	    Score = 80 (28.2 bits), Expect = 0.049, Sum P(2) = 0.048

>CcruzaQ_130 has the following protein neighbors:
Sequence,   
  =>sp|P47977|CTH2_YEAST ZINC FINGER PROTEIN CTH2 (YTIS11 PROTEIN) >pir||S59328
            hypothetical protein YLR136c - yeast (Saccharomyces cerevisiae)
            >pir||JC5002 CCCH zinc finger protein 2 - yeast (Saccharomyces
            cerevisiae) >bbs|163205 (S76619) Ytis11p [Saccharomyces cerevisiae,
            Peptide, 285 aa] [Saccharomyces cerevisiae] >gi|995702 (X91258)
            pid:e198525 [Saccharomyces cerevisiae] >gi|1020085 (L42134) zinc
            finger protein [Saccharomyces cerevisiae] >gi|1256907 (U53881)
            Tis11p [Saccharomyces cerevisiae] >gnl|PID|e245573 (Z73308) ORF
            YLR136c [Saccharomyces cerevisiae]
            Length = 285
	    Score = 114 (40.1 bits), Expect = 0.0047, P = 0.0047
  =>sp|Q94131|PIE1_CAEEL PIE-1 PROTEIN >gi|1654336 (U62896) PIE-1 [Caenorhabditis
            elegans]
            Length = 335
	    Score = 114 (40.1 bits), Expect = 0.0066, P = 0.0065
  =>gnl|PID|e1187500 (Z54235) C09G9.6 [Caenorhabditis elegans]
            Length = 145
	    Score = 99 (34.8 bits), Expect = 0.015, P = 0.015
  =>gnl|PID|e1247633 (Z82261) C35D6.4 [Caenorhabditis elegans]
            Length = 203
	    Score = 106 (37.3 bits), Expect = 0.016, P = 0.015
  =>gi|1255428 (U53155) similar to mamalian ZFP36 proteins in zinc finger regions
            [Caenorhabditis elegans]
            Length = 393
	    Score = 111 (39.1 bits), Expect = 0.019, P = 0.018
  =>gnl|PID|e1298484 (Z98866) Y49E10.q [Caenorhabditis elegans]
            Length = 678
	    Score = 114 (40.1 bits), Expect = 0.019, P = 0.019
  =>gnl|PID|e1246851 (Z82267) F38C2.7 [Caenorhabditis elegans]
            Length = 203
	    Score = 105 (37.0 bits), Expect = 0.020, P = 0.020
  =>gnl|PID|e1297805 (Z81521) F32A11.a [Caenorhabditis elegans]
            Length = 210
	    Score = 102 (35.9 bits), Expect = 0.050, P = 0.049
  =>gi|2353340 (AF017442) Tis11 family protein [Crassostrea virginica]
            Length = 401
	    Score = 105 (37.0 bits), Expect = 0.087, P = 0.083
  =>gi|1086811 (U41109) contains a 2 zinc-fingers of the CX(8)CX(5)CX(3)H typr
            [Caenorhabditis elegans]
            Length = 264
	    Score = 102 (35.9 bits), Expect = 0.089, P = 0.085

>CcruzaQ_483 has the following protein neighbors:
Sequence,   
  =>sp|Q14137|Y124_HUMAN HYPOTHETICAL PROTEIN KIAA0124 >gnl|PID|d1010115 (D50914)
            The KIAA0124 gene product is novel. [Homo sapiens]
            Length = 682
	    Score = 455 (160.2 bits), Expect = 4.6e-42, P = 4.6e-42
  =>gi|1679772 (U77415) Bop1 [Mus musculus]
            Length = 732
	    Score = 442 (155.6 bits), Expect = 2.2e-40, P = 2.2e-40
  =>sp|Q04660|YMT9_YEAST HYPOTHETICAL 91.7 KD TRP-ASP REPEATS CONTAINING PROTEIN
            IN NUP116-FAR3 INTERGENIC REGION >pir||S54549 probable membrane
            protein YMR049c - yeast (Saccharomyces cerevisiae) >gi|817882
            (Z49703) unknown [Saccharomyces cerevisiae]
            Length = 807
	    Score = 378 (133.1 bits), Expect = 2.7e-32, P = 2.7e-32

>CcruzaQ_1551 has the following protein neighbors:
Sequence,   
  =>pir||S25649 heat shock protein 70 - Trypanosoma cruzi >gi|10626 (X67716) Heat
            shock protein 70 [Trypanosoma cruzi]
            Length = 678
	    Score = 1322 (465.4 bits), Expect = 3.0e-234, Sum P(4) = 3.0e-234
  =>pir||A44979 heat shock protein 70 - Trypanosoma cruzi (strain Peru) >gi|162117
            (M26595) heat shock protein HSP70 [Trypanosoma cruzi]
            Length = 653
	    Score = 1322 (465.4 bits), Expect = 8.2e-224, Sum P(4) = 8.2e-224

>CcruzaQ_168 has the following protein neighbors:
Sequence,   
  =>pir||S43286 MURF4 protein - Trypanosoma cruzi (fragment)
            Length = 64
	    Score = 84 (29.6 bits), Expect = 0.052, P = 0.050
  =>pir||S51910 cryptogene protein G4 - Sauroleishmania tarentolae (strain LEM125)
            Length = 169
	    Score = 97 (34.1 bits), Expect = 0.075, P = 0.072
  =>gi|967238 (U30221) NADH dehydrogenase subunit 5 [Crithidia fasciculata]
           Length = 98
	    Score = 81 (28.5 bits), Expect = 0.11, P = 0.10

>CcruzaQ_2801 has the following protein neighbors:
Sequence,   
  =>pir||S33475 hypothetical protein - Trypanosoma brucei >gi|311494 (X73565)
            expression site associated gene gene product [Trypanosoma
            (Trypanozoon) brucei]
            Length = 686
	    Score = 639 (224.9 bits), Expect = 7.5e-62, P = 7.5e-62
  =>gi|409754 (L25643) integral membrane protein [Leishmania infantum]
           Length = 627
	    Score = 412 (145.0 bits), Expect = 1.7e-37, P = 1.7e-37
  =>gi|703123 (L38571) ORF G; putative [Leishmania donovani]
           Length = 627
	    Score = 412 (145.0 bits), Expect = 1.7e-37, P = 1.7e-37
  =>gi|3377706 (AF078929) biopterin transporter [Leishmania mexicana]
            Length = 631
	    Score = 403 (141.9 bits), Expect = 1.9e-36, P = 1.9e-36
  =>gnl|PID|d1011013 (D64002) integral membrane protein [Synechocystis sp.]
            Length = 494
	    Score = 193 (67.9 bits), Expect = 2.0e-11, P = 2.0e-11
  =>gi|3033544 (AF055873) hypothetical protein [Synechococcus PCC7942]
            Length = 453
	    Score = 168 (59.1 bits), Expect = 9.9e-09, P = 9.9e-09
  =>sp|P52789|HXK2_HUMAN HEXOKINASE, TYPE II (HK II) >pir||JC2025 hexokinase (EC
            2.7.1.1) II - human >gi|587202 (Z46376) Human hexokinase II cDNA
            [Homo sapiens]
            Length = 917
	    Score = 124 (43.7 bits), Expect = 0.0019, P = 0.0019
  =>gi|1070153 (X82198) hexokinase [Entamoeba histolytica] >prf||2202317B
            hexokinase 2 [Entamoeba histolytica]
            Length = 445
	    Score = 116 (40.8 bits), Expect = 0.0052, P = 0.0052
  =>gi|204615 (M68972) hexokinase type II [Rattus norvegicus]
           Length = 516
	    Score = 114 (40.1 bits), Expect = 0.011, P = 0.011
  =>gnl|PID|e303316 (Y11115) hexokinase [Entamoeba dispar]
            Length = 445
	    Score = 113 (39.8 bits), Expect = 0.011, P = 0.011
  =>sp|P27881|HXK2_RAT HEXOKINASE TYPE II (HK II) >pir||S15885 hexokinase (EC
            2.7.1.1) II precursor - rat >gi|204613 (M68971) hexokinase type II
            [Rattus norvegicus]
            Length = 917
	    Score = 116 (40.8 bits), Expect = 0.014, P = 0.014
  =>sp|O08528|HXK2_MOUSE HEXOKINASE TYPE II (HK II) >gnl|PID|e309075 (Y11666)
            hexokinase II [Mus musculus]
            Length = 917
	    Score = 116 (40.8 bits), Expect = 0.014, P = 0.014
  =>gi|2689658 (AF027179) mutant type II hexokinase [Rattus norvegicus]
            Length = 917
	    Score = 116 (40.8 bits), Expect = 0.014, P = 0.014
  =>sp|Q09756|HXK1_SCHPO HEXOKINASE 1 >pir||S68694 hexokinase (EC 2.7.1.1) 1 -
            fission yeast (Schizosaccharomyces pombe) >pir||S62406 hypothetical
            protein SPAC24H6.04 - fission yeast (Schizosaccharomyces pombe)
            >gi|984701 (Z54142) hexokinase [Schizosaccharomyces pombe]
            >gi|1160508 (X92894) hexokinase 1 [Schizosaccharomyces pombe]
            Length = 484
	    Score = 112 (39.4 bits), Expect = 0.016, P = 0.016
  =>gnl|PID|d1014556 (D89198) similar to Saccharomyces cerevisiae hexokinase B,
            SWISS-PROT Accession Number P04807 [Schizosaccharomyces pombe]
            Length = 436
	    Score = 110 (38.7 bits), Expect = 0.023, P = 0.023
  =>gi|34670 (X66957) hexokinase type 1 [Homo sapiens]
          Length = 631
	    Score = 112 (39.4 bits), Expect = 0.024, P = 0.023
  =>pir||A29919 hexokinase (EC 2.7.1.1) - rat (fragment)
            Length = 452
	    Score = 110 (38.7 bits), Expect = 0.024, P = 0.024
  =>sp|P50521|HXK2_SCHPO HEXOKINASE 2 >pir||S68693 hexokinase (EC 2.7.1.1) 2 -
            fission yeast (Schizosaccharomyces pombe) >gnl|PID|e209715 (X92895)
            hexokinase 2 [Schizosaccharomyces pombe] >gnl|PID|e334098 (Z98530)
            hexokinase [Schizosaccharomyces pombe]
            Length = 455
	    Score = 110 (38.7 bits), Expect = 0.025, P = 0.024
  =>pir||A55277 hexokinase (EC 2.7.1.1) 1 - bovine
            Length = 918
	    Score = 113 (39.8 bits), Expect = 0.029, P = 0.029
  =>sp|P27595|HXK1_BOVIN HEXOKINASE, TYPE I (HK I) (BRAIN FORM HEXOKINASE)
            >gi|163152 (M65140) hexokinase 1 [Bos taurus]
            Length = 918
	    Score = 113 (39.8 bits), Expect = 0.029, P = 0.029
  =>gi|204380 (M25807) glucokinase (EC 2.7.1.1) [Rattus norvegicus]
           Length = 448
	    Score = 109 (38.4 bits), Expect = 0.031, P = 0.031
  =>gi|183227 (M69051) glucokinase [Homo sapiens]
           Length = 464
	    Score = 109 (38.4 bits), Expect = 0.033, P = 0.032
  =>pir||C46157 hexokinase (EC 2.7.1.1) IV, minor hepatic form - human
            Length = 464
	    Score = 109 (38.4 bits), Expect = 0.033, P = 0.032
  =>gi|2773378 (AF041022) glucokinase [Homo sapiens]
            Length = 464
	    Score = 109 (38.4 bits), Expect = 0.033, P = 0.032
  =>pir||A46157 hexokinase (EC 2.7.1.1) IV, pancreatic beta cell form - human
            Length = 465
	    Score = 109 (38.4 bits), Expect = 0.033, P = 0.032
  =>sp|P35557|HXKP_HUMAN HEXOKINASE D, PANCREATIC ISOZYME (HEXOKINASE TYPE IV)
            (HK4) (GLUCOKINASE) >gi|179427 (M88011) glucokinase [Homo sapiens]
            >gi|183235 (M90299) glucokinase [Homo sapiens] >gi|2773376
            (AF041022) glucokinase [Homo sapiens]
            Length = 465
	    Score = 109 (38.4 bits), Expect = 0.033, P = 0.032
  =>sp|P17711|HXKH_RAT HEXOKINASE D, HEPATIC ISOZYME (HEXOKINASE TYPE IV) (HK4)
            (GLUCOKINASE) >pir||A31810 hexokinase (EC 2.7.1.1) type 4 - rat
            >gi|56240 (X53588) hexokinase type 4 [Rattus norvegicus] >gi|204332
            (J04218) glucokinase (EC 2.7.1.1) [Rattus norvegicus] >gi|204344
            (M24952) glucokinase gene [Rattus norvegicus]
            Length = 465
	    Score = 109 (38.4 bits), Expect = 0.033, P = 0.032
  =>sp|P17712|HXKP_RAT HEXOKINASE D, PANCREATIC ISOZYMES (HEXOKINASE TYPE IV)
            (HK4) (GLUCOKINASE)
            Length = 465
	    Score = 109 (38.4 bits), Expect = 0.033, P = 0.032
  =>sp|P52792|HXKP_MOUSE HEXOKINASE D, PANCREATIC ISOZYME (HEXOKINASE TYPE IV)
            (HK4) (GLUCOKINASE) >gi|886344 (L38990) glucokinase [Mus musculus]
            Length = 465
	    Score = 109 (38.4 bits), Expect = 0.033, P = 0.032
  =>sp|P52791|HXKH_MOUSE HEXOKINASE D, HEPATIC ISOZYME (HEXOKINASE TYPE IV) (HK4)
            (GLUCOKINASE) >pir||I49693 glucokinase (EC 2.7.1.2) - mouse
            >gi|1008870 (L41631) glucokinase [Mus musculus]
            Length = 465
	    Score = 109 (38.4 bits), Expect = 0.033, P = 0.032
  =>pir||B46157 hexokinase (EC 2.7.1.1) IV, major hepatic form - human
            Length = 466
	    Score = 109 (38.4 bits), Expect = 0.033, P = 0.032
  =>sp|Q05810|HXKH_HUMAN HEXOKINASE D, LIVER ISOZYMES (HEXOKINASE TYPE IV) (HK4)
            (GLUCOKINASE) >gi|2773377 (AF041022) glucokinase [Homo sapiens]
            Length = 466
	    Score = 109 (38.4 bits), Expect = 0.033, P = 0.032
  =>pir||S12061 hexokinase (EC 2.7.1.1) type IV - rat >gi|56242 (X53589)
            hexokinase type 4 [Rattus norvegicus]
            Length = 498
	    Score = 109 (38.4 bits), Expect = 0.036, P = 0.036
  =>gi|2873350 (AF016365) hexokinase I [Homo sapiens]
            Length = 916
	    Score = 112 (39.4 bits), Expect = 0.037, P = 0.037
  =>sp|P19367|HXK1_HUMAN HEXOKINASE, TYPE I (HK I) (BRAIN FORM HEXOKINASE)
            >pir||A31869 hexokinase (EC 2.7.1.1) I - human >gi|184021 (M75126)
            hexokinase 1 [Homo sapiens]
            Length = 917
	    Score = 112 (39.4 bits), Expect = 0.038, P = 0.037
  =>pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human Brain Hexokinase
            Type I Complexed With Glucose And Glucose-6-Phosphate
            Phosphotransferase, Glycolysis, Allosteric Enzyme, Glucose,
            Glucose-6-Phosphate Mol_id: 1; Molecule: D-Glucose ... >pdb|1HKB|B
            Chain B, Crystal Structure Of Recombinant Human Brain Hexokinase
            Type I Complexed With Glucose And Glucose-6-Phosphate
            Phosphotransferase, Glycolysis, Allosteric Enzyme, Glucose,
            Glucose-6-Phosphate Mol_id: 1; Molecule: D-Glucose ... >gi|2873349
            (AF016365) hexokinase I [Homo sapiens]
            Length = 917
	    Score = 112 (39.4 bits), Expect = 0.038, P = 0.037
  =>gi|1070151 (X82197) hexokinase [Entamoeba histolytica] >prf||2202317A
            hexokinase 1 [Entamoeba histolytica]
            Length = 445
	    Score = 108 (38.0 bits), Expect = 0.039, P = 0.039
  =>gnl|PID|e214648 (X93494) glucokinase [Xenopus laevis] >prf||2210326A
            glucokinase [Xenopus laevis]
            Length = 458
	    Score = 107 (37.7 bits), Expect = 0.053, P = 0.051
  =>sp|P17710|HXK1_MOUSE HEXOKINASE, TYPE I (HK I) (HEXOKINASE, TUMOR ISOZYME)
            >gi|309289 (J05277) hexokinase (EC 2.7.1.1) [Mus musculus]
            Length = 918
	    Score = 110 (38.7 bits), Expect = 0.062, P = 0.060
  =>pir||A35244 hexokinase (EC 2.7.1.1), tumor - mouse
            Length = 918
	    Score = 110 (38.7 bits), Expect = 0.062, P = 0.060
  =>gi|3207508 (J04526) hexokinase [Rattus norvegicus]
            Length = 918
	    Score = 110 (38.7 bits), Expect = 0.062, P = 0.060
  =>sp|P05708|HXK1_RAT HEXOKINASE, TYPE I (HK I) (BRAIN FORM HEXOKINASE)
            Length = 919
	    Score = 110 (38.7 bits), Expect = 0.062, P = 0.060
  =>gi|1850140 (L16949) hexokinase [Mus musculus]
            Length = 945
	    Score = 110 (38.7 bits), Expect = 0.064, P = 0.062
  =>gnl|PID|e303315 (Y11114) hexokinase [Entamoeba dispar]
            Length = 445
	    Score = 104 (36.6 bits), Expect = 0.11, P = 0.10

>CcruzaQ_1377 has the following protein neighbors:
Sequence,   
  =>sp|P22513|G3PG_TRYCR GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, GLYCOSOMAL
            (GAPDH) >pir||DEUT1C glyceraldehyde-3-phosphate dehydrogenase (EC
            1.2.1.12), glycosomal - Trypanosoma cruzi >gi|10608 (X52898)
            glyceraldehyde 3-phosphate dehydrogenase [Trypanosoma cruzi]
            >gi|10609 (X52898) glyceraldehyde 3-phosphate dehydrogenase
            [Trypanosoma cruzi]
            Length = 359
	    Score = 1817 (639.6 bits), Expect = 1.1e-186, P = 1.1e-186
  =>sp|P22512|G3PG_TRYBB GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, GLYCOSOMAL
            (GAPDH) >pir||DEUT1B glyceraldehyde-3-phosphate dehydrogenase (EC
            1.2.1.12) 1, glycosomal - Trypanosoma brucei >gi|11010 (X59955)
            glyceraldehyde 3-phosphate dehydrogenase [Trypanosoma brucei]
            >gi|11011 (X59955) glyceraldehyde 3-phosphate dehydrogenase
            [Trypanosoma brucei] >gi|162089 (M26816) glyceraldehyde-phosphate
            dehydrogenase [Trypanosoma brucei]
            Length = 359
	    Score = 1671 (588.2 bits), Expect = 3.3e-171, P = 3.3e-171
  =>pdb|1GGA|O Trypanosoma brucei brucei >pdb|1GGA|P Trypanosoma brucei brucei
            >pdb|1GGA|Q Trypanosoma brucei brucei >pdb|1GGA|R Trypanosoma
            brucei brucei >pdb|1GGA|A Trypanosoma brucei brucei >pdb|1GGA|B
            Trypanosoma brucei brucei
            Length = 358
	    Score = 1667 (586.8 bits), Expect = 8.7e-171, P = 8.7e-171
  =>sp|Q27890|G3PG_LEIME GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, GLYCOSOMAL
            (GAPDH) >pir||A48445 glyceraldehyde-3-phosphate dehydrogenase (EC
            1.2.1.12), glycosomal - Leishmania mexicana >gi|9550 (X65226)
            glyceraldehyde 3-phosphate dehydrogenase [Leishmania mexicana]
            >gi|9551 (X65226) glyceraldehyde 3-phosphate dehydrogenase
            [Leishmania mexicana]
            Length = 361
	    Score = 1572 (553.4 bits), Expect = 1.0e-160, P = 1.0e-160
  =>pdb|1GYP|A Leishmania mexicana >pdb|1GYP|B Leishmania mexicana >pdb|1GYP|C
            Leishmania mexicana >pdb|1GYP|D Leishmania mexicana
            Length = 358
	    Score = 1572 (553.4 bits), Expect = 1.0e-160, P = 1.0e-160
  =>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
            Monoclinic Crystal Form Glyceraldehyde-3-Phosphate Dehydrogenase,
            Glycosome, Trypanosome, Oxidoreductase Mol_id: 1; Molecule:
            Glyceraldehyde-3-Phosphate Dehydrogena... >pdb|1A7K|B Chain B,
            Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A Monoclinic
            Crystal Form Glyceraldehyde-3-Phosphate Dehydrogenase, Glycosome,
            Trypanosome, Oxidoreductase Mol_id: 1; Molecule:
            Glyceraldehyde-3-Phosphate Dehydrogena... >pdb|1A7K|C Chain C,
            Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A Monoclinic
            Crystal Form Glyceraldehyde-3-Phosphate Dehydrogenase, Glycosome,
            Trypanosome, Oxidoreductase Mol_id: 1; Molecule:
            Glyceraldehyde-3-Phosphate Dehydrogena... >pdb|1A7K|D Chain D,
            Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A Monoclinic
            Crystal Form Glyceraldehyde-3-Phosphate Dehydrogenase, Glycosome,
            Trypanosome, Oxidoreductase Mol_id: 1; Molecule:
            Glyceraldehyde-3-Phosphate Dehydrogena...
            Length = 360
	    Score = 1572 (553.4 bits), Expect = 1.0e-160, P = 1.0e-160
  =>gi|520888 (X74535) glyceraldehyde-3-phosphate dehydrogenase [Trypanoplasma
           borreli]
           Length = 363
	    Score = 1437 (505.8 bits), Expect = 2.0e-146, P = 2.0e-146
  =>gi|870798 (L21903) glyceraldehyde-3-phosphate dehydrogenase [Euglena gracilis]
           >gi|870800 (L39772) glyceraldehyde-3-phosphate dehydrogenase
           [Euglena gracilis]
           Length = 353
	    Score = 1379 (485.4 bits), Expect = 2.9e-140, P = 2.9e-140
  =>gi|520887 (X74535) glyceraldehyde-3-phosphate dehydrogenase [Trypanoplasma
           borreli]
           Length = 363
	    Score = 1362 (479.4 bits), Expect = 1.8e-138, P = 1.8e-138
  =>gi|3323159 (AE001255) glyceraldehyde 3-phosphate dehydrogenase (gap)
            [Treponema pallidum]
            Length = 350
	    Score = 1163 (409.4 bits), Expect = 2.2e-117, P = 2.2e-117
  =>gnl|PID|e1256477 (AL022071) glyceraldehyde 3-phosphate dehydrogenase
            [Schizosaccharomyces pombe]
            Length = 335
	    Score = 957 (336.9 bits), Expect = 1.5e-95, P = 1.5e-95
  =>sp|Q42671|G3PC_CRAPL GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >pir||S42479 glyceraldehyde-3-phosphate dehydrogenase (EC
            1.2.1.12), cytosolic - Craterostigma plantagineum >gi|460979
            (X78307) glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)
            [Craterostigma plantagineum]
            Length = 337
	    Score = 951 (334.8 bits), Expect = 6.5e-95, P = 6.5e-95
  =>sp|P34783|G3P_ATRNU GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||S38570 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - Atriplex nummularia >gi|409575 (U02886)
            glyceraldehyde-3-phosphate dehydrogenase [Atriplex nummularia]
            >gi|414607 (X75597) glyceraldehyde-3-phosphate dehydrogenase
            [Atriplex nummularia]
            Length = 360
	    Score = 949 (334.1 bits), Expect = 1.1e-94, P = 1.1e-94
  =>sp|Q39769|G3PC_GINBI GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >gi|435046 (L26924) glyceraldehyde-phosphate dehydrogenase [Ginkgo
            biloba]
            Length = 340
	    Score = 947 (333.4 bits), Expect = 1.7e-94, P = 1.7e-94
  =>sp|P26519|G3PC_PETCR GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >pir||DEPZG glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - parsley >gi|20549 (X60344) glyceraldehyde 3-phosphate
            dehydrogenase [Petroselinum crispum]
            Length = 336
	    Score = 946 (333.0 bits), Expect = 2.2e-94, P = 2.2e-94
  =>sp|P34921|G3PC_DIACA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            Length = 338
	    Score = 943 (332.0 bits), Expect = 4.6e-94, P = 4.6e-94
  =>gi|551682 (L07497) glyceraldehyde-3-phosphate dehydrogenase [Anabaena
           variabilis]
           Length = 335
	    Score = 940 (330.9 bits), Expect = 9.5e-94, P = 9.5e-94
  =>sp|P34916|G3P1_ANAVA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 1 >pir||I39602
            glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) 1 - Anabaena
            variabilis
            Length = 334
	    Score = 940 (330.9 bits), Expect = 9.5e-94, P = 9.5e-94
  =>sp|P78958|G3P_SCHPO GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gnl|PID|e155306 (X85332) glyceraldehyde 3-phosphate dehydrogenase
            (phosphorylating) [Schizosaccharomyces pombe] >gnl|PID|e1296616
            (AL023796) glyceraldehyde 3-phosphate dehydrogenase
            [Schizosaccharomyces pombe]
            Length = 336
	    Score = 939 (330.5 bits), Expect = 1.2e-93, P = 1.2e-93
  =>pir||S51836 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) precursor -
            Scotch pine >gi|1100223 (L32560) glyceraldehyde-3-phosphate
            dehydrogenase [Pinus sylvestris]
            Length = 433
	    Score = 938 (330.2 bits), Expect = 1.5e-93, P = 1.5e-93
  =>pir||S51837 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) precursor -
            Scotch pine >gi|1100225 (L32561) glyceraldehyde-3-phosphate
            dehydrogenase [Pinus sylvestris]
            Length = 433
	    Score = 936 (329.5 bits), Expect = 2.5e-93, P = 2.5e-93
  =>sp|P26517|G3PX_HORVU GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >pir||DEBHG glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - barley >gi|18978 (X60343) glyceraldehyde 3-phosphate
            dehydrogenase [Hordeum vulgare]
            Length = 337
	    Score = 935 (329.1 bits), Expect = 3.2e-93, P = 3.2e-93
  =>gnl|PID|e1287123 (AJ001706) NAD-dependent glyceraldehyde-3-phosphate
            dehydrogenase [Pinus sylvestris]
            Length = 365
	    Score = 933 (328.4 bits), Expect = 5.2e-93, P = 5.2e-93
  =>sp|P04796|G3PC_SINAL GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >pir||DEIS3C glyceraldehyde-3-phosphate dehydrogenase (EC
            1.2.1.12), cytosolic - white mustard >gi|21143 (X04301) GAPDH (aa
            1-338) [Sinapis alba]
            Length = 338
	    Score = 931 (327.7 bits), Expect = 8.5e-93, P = 8.5e-93
  =>pir||DEZMGC glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) C,
            cytosolic - maize >gi|22238 (X07156) GADPH (AA 1-337) [Zea mays]
            Length = 337
	    Score = 930 (327.4 bits), Expect = 1.1e-92, P = 1.1e-92
  =>gi|312179 (X73151) glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)
           [Zea mays] >gi|1184772 (U45855) cytosolic glyceroldehyde-3-phosphate
           dehydrogenase GAPC2 [Zea mays] >gi|1185554 (U45858)
           glyceraldehyde-3-phosphate dehydrogenase [Zea mays]
           Length = 337
	    Score = 930 (327.4 bits), Expect = 1.1e-92, P = 1.1e-92
  =>sp|P08735|G3PC_MAIZE GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >pir||S06879 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            C - maize >gi|295853 (X15596) GAPDH gene product [Zea mays]
            Length = 337
	    Score = 930 (327.4 bits), Expect = 1.1e-92, P = 1.1e-92
  =>sp|P34924|G3PC_PINSY GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >gi|169386 (L07501) glyceraldehyde-3-phosphate dehydrogenase [Pinus
            sylvestris]
            Length = 340
	    Score = 926 (326.0 bits), Expect = 2.9e-92, P = 2.9e-92
  =>sp|P25858|G3PC_ARATH GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >pir||JQ1287 glyceraldehyde-3-phosphate dehydrogenase (EC
            1.2.1.12), cytosolic - Arabidopsis thaliana >gi|166706 (M64116)
            cystolic glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis
            thaliana] >gi|166710 (M64119) glyceraldehyde-3-phosphate
            dehydrogenase [Arabidopsis thaliana]
            Length = 338
	    Score = 922 (324.6 bits), Expect = 7.7e-92, P = 7.7e-92
  =>pir||DEASG3 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) -
            Emericella nidulans >gi|168049 (M19694) glyceraldehyde-3-phosphate
            dehydrogenase [Emericella nidulans] >gi|168051 (M33539)
            glyceraldehyde-3-phosphate dehydrogenase (gpdA) [Emericella
            nidulans]
            Length = 336
	    Score = 922 (324.6 bits), Expect = 7.7e-92, P = 7.7e-92
  =>sp|P26518|G3PC_MAGLI GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >pir||DEJMG glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - Magnolia liliiflora >gi|19566 (X60347) glyceraldehyde 3-phosphate
            dehydrogenase [Magnolia liliiflora]
            Length = 341
	    Score = 922 (324.6 bits), Expect = 7.7e-92, P = 7.7e-92
  =>sp|P20445|G3P_EMENI GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            Length = 336
	    Score = 922 (324.6 bits), Expect = 7.7e-92, P = 7.7e-92
  =>gi|1184774 (U45856) cytosolic glyceroldehyde-3-phosphate dehydrogenase GAPC3
            [Zea mays]
            Length = 337
	    Score = 921 (324.2 bits), Expect = 9.8e-92, P = 9.8e-92
  =>sp|P25861|G3PC_ANTMA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >pir||DESKG glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - garden snapdragon
            Length = 337
	    Score = 919 (323.5 bits), Expect = 1.6e-91, P = 1.6e-91
  =>gnl|PID|e37612 (X59517) glycolytic glyceraldehyde 3-phosphate dehydrogenase
            [Antirrhinum majus]
            Length = 336
	    Score = 919 (323.5 bits), Expect = 1.6e-91, P = 1.6e-91
  =>sp|P17878|G3PC_MESCR GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >pir||A35080 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - common ice plant >gi|167260 (M29956)
            NAD-glyceraldehyde-3-phosphate dehydrogenase [Mesembryanthemum
            crystallinum] >gi|167264 (J05223) glyceraldehyde-3-phosphate
            dehydrogenase (EC 1.2.1.12) [Mesembryanthemum crystallinum]
            Length = 337
	    Score = 916 (322.4 bits), Expect = 3.3e-91, P = 3.3e-91
  =>sp|P26520|G3PC_PETHY GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >pir||DEPJG glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - garden petunia >gi|20551 (X60346) glyceraldehyde 3-phosphate
            dehydrogenase [Petunia hybrida]
            Length = 337
	    Score = 916 (322.4 bits), Expect = 3.3e-91, P = 3.3e-91
  =>gi|1184776 (U45857) cytosolic glyceroldehyde-3-phosphate dehydrogenase GAPC4
            [Zea mays]
            Length = 337
	    Score = 916 (322.4 bits), Expect = 3.3e-91, P = 3.3e-91
  =>gi|2078386 (U96623) glyceraldehyde-3-phosphate-dehydrogenase [Selaginella
            lepidophylla]
            Length = 340
	    Score = 916 (322.4 bits), Expect = 3.3e-91, P = 3.3e-91
  =>gnl|PID|e1287116 (AJ003783) glyeraldehyde-3-phosphate dehydrogenase [Marsilea
            quadrifolia]
            Length = 368
	    Score = 915 (322.1 bits), Expect = 4.2e-91, P = 4.2e-91
  =>sp|P26521|G3PC_RANAC GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >pir||DENDG glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - common buttercup >gi|21066 (X60345) glyceraldehyde 3-phosphate
            dehydrogenase [Ranunculus acris]
            Length = 338
	    Score = 914 (321.7 bits), Expect = 5.4e-91, P = 5.4e-91
  =>sp|P49433|G3P1_SYNY3 GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 1 (GAPDH 1)
            (GAP-1) >pir||S54150 glyceraldehyde-3-phosphate dehydrogenase (EC
            1.2.1.12) - Synechocystis sp. (PCC 6803) >gi|785044 (X86375)
            glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)
            [Synechocystis sp.]
            Length = 339
	    Score = 914 (321.7 bits), Expect = 5.4e-91, P = 5.4e-91
  =>gnl|PID|d1018342 (D90907) glyceraldehyde 3-phosphate dehydrogenase
            [Synechocystis sp.]
            Length = 354
	    Score = 912 (321.0 bits), Expect = 8.8e-91, P = 8.8e-91
  =>sp|Q42977|G3PC_ORYSA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >gi|968996 (U31676) glyceraldehyde-3-phosphate dehydrogenase [Oryza
            sativa]
            Length = 337
	    Score = 910 (320.3 bits), Expect = 1.4e-90, P = 1.4e-90
  =>sp|Q12552|G3P_ASPNG GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gnl|PID|e301023 (X99652) glyceraldehyde 3-phosphate dehydrogenase
            (phosphorylating) [Aspergillus niger]
            Length = 336
	    Score = 910 (320.3 bits), Expect = 1.4e-90, P = 1.4e-90
  =>sp|Q00640|G3P_ERYGR GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gnl|PID|e257702 (X99732) glyceraldehyde-3-phosphate dehydrogenase
            [Erysiphe graminis]
            Length = 338
	    Score = 909 (320.0 bits), Expect = 1.8e-90, P = 1.8e-90
  =>sp|P17730|G3P2_TRIKO GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 2 (GAPDH2)
            >gnl|PID|d1003901 (D14518) Glyceraldehydephosphate Dehydrogenase
            [Hypocrea ceramica]
            Length = 338
	    Score = 907 (319.3 bits), Expect = 3.0e-90, P = 3.0e-90
  =>pir||S29814 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) - imperfect
            fungus (Trichoderma koningii) >prf||1908209B
            glyceraldehyde-3-phosphate dehydrogenase:ISOTYPE=II [Trichoderma
            koningii]
            Length = 337
	    Score = 907 (319.3 bits), Expect = 3.0e-90, P = 3.0e-90
  =>sp|P34923|G3PC_PHYPA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >gi|296131 (X72381) glyceraldehyde 3-phosphate dehydrogenase
            (phosphorylating) [Physcomitrella patens]
            Length = 342
	    Score = 905 (318.6 bits), Expect = 4.9e-90, P = 4.9e-90
  =>sp|P34922|G3PC_PEA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >gi|169091 (L07500) glyceraldehyde-3-phosphate dehydrogenase [Pisum
            sativum] >gi|1345567 (X73150) glyceraldehyde 3-phosphate
            dehydrogenase (phosphorylating) [Pisum sativum]
            Length = 338
	    Score = 904 (318.2 bits), Expect = 6.2e-90, P = 6.2e-90
  =>sp|Q41595|G3PC_TAXBA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >gi|435114 (L26922) glyceraldehyde-phosphate dehydrogenase [Taxus
            baccata]
            Length = 340
	    Score = 904 (318.2 bits), Expect = 6.2e-90, P = 6.2e-90
  =>sp|P09317|G3P_USTMA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||DEUSGM glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - smut fungus (Ustilago maydis) >gi|5219 (X07879) gapd [Ustilago
            maydis]
            Length = 337
	    Score = 901 (317.2 bits), Expect = 1.3e-89, P = 1.3e-89
  =>sp|P54270|G3PC_GRAVE GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >pir||S59579 glyceraldehyde-3-phosphate dehydrogenase (EC
            1.2.1.12), cytosolic - red alga (Gracilaria verrucosa) >gi|604521
            (L38661) cytosolic glyceraldehyde-3-phosphate dehydrogenase
            [Gracilaria verrucosa]
            Length = 335
	    Score = 901 (317.2 bits), Expect = 1.3e-89, P = 1.3e-89
  =>pir||S26974 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) -
            basidiomycete (Phanerochaete chrysosporium)
            Length = 337
	    Score = 898 (316.1 bits), Expect = 2.7e-89, P = 2.7e-89
  =>sp|P49644|G3PC_CHLRE GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >gi|454124 (L27669) glyceraldehyde-3-phosphate dehydrogenase
            [Chlamydomonas reinhardtii]
            Length = 341
	    Score = 892 (314.0 bits), Expect = 1.2e-88, P = 1.2e-88
  =>sp|O13507|G3P_PHARH GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gnl|PID|e290083 (Y08366) glyceraldehyde-3-phosphate dehydrogenase
            [Phaffia rhodozyma]
            Length = 338
	    Score = 890 (313.3 bits), Expect = 1.9e-88, P = 1.9e-88
  =>sp|P29497|G3P_COCHE GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||S26946 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - fungus (Cochliobolus heterostrophus) >gi|2582 (X63516)
            glyceraldehyde 3-phosphate dehydrogenase [Cochliobolus
            heterostrophus]
            Length = 337
	    Score = 889 (312.9 bits), Expect = 2.4e-88, P = 2.4e-88
  =>sp|P08439|G3P_ZYGRO GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||DEKZGR glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - yeast (Zygosaccharomyces rouxii) >gnl|PID|d1000525 (D00134)
            glyceraldehyde-3-phosphate dehydrogenase [Zygosaccharomyces rouxii]
            >prf||1308113A dehydrogenase,glyceraldehydephosphate
            [Zygosaccharomyces rouxii]
            Length = 333
	    Score = 888 (312.6 bits), Expect = 3.1e-88, P = 3.1e-88
  =>sp|Q92211|G3P_CANAL GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gi|1628589 (U72203) glyceraldehyde-3-phosphate dehydrogenase
            [Candida albicans]
            Length = 331
	    Score = 888 (312.6 bits), Expect = 3.1e-88, P = 3.1e-88
  =>gnl|PID|e329478 (X64537) triosephosphate isomerase +
            glyceraldehyde-3-phosphate dehydrogenase [Phytophthora infestans]
            Length = 589
	    Score = 886 (311.9 bits), Expect = 5.0e-88, P = 5.0e-88
  =>sp|P32637|G3P_PODAN GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||S26863 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - Podospora anserina >gi|3102 (X62824) glyceraldehyde-3-phosphate
            dehydrogenase [Podospora anserina]
            Length = 337
	    Score = 884 (311.2 bits), Expect = 8.2e-88, P = 8.2e-88
  =>sp|P26988|G3P_PHYIN GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||DEJNGI glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - Phytophthora infestans
            Length = 332
	    Score = 884 (311.2 bits), Expect = 8.2e-88, P = 8.2e-88
  =>sp|P87197|G3P_TRIHA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gnl|PID|e1173600 (Y12542) glyceraldehyde-3-phosphate dehydrogenase
            [Trichoderma harzianum]
            Length = 338
	    Score = 884 (311.2 bits), Expect = 8.2e-88, P = 8.2e-88
  =>sp|P32638|G3P_SCHCO GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||S26973 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - bracket fungus (Schizophyllum commune) >gi|169852 (M81724)
            glyceraldehyde-3-phosphate dehydrogenase [Schizophyllum commune]
            Length = 337
	    Score = 883 (310.8 bits), Expect = 1.0e-87, P = 1.0e-87
  =>sp|Q00584|G3P_CLAPU GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||S40610 glyceraldehyde-3-phosphate dehydrogenase - ergot
            fungus >gi|452311 (X73282) glyceraldehyde-3-phosphate dehydrogenase
            [Claviceps purpurea]
            Length = 337
	    Score = 881 (310.1 bits), Expect = 1.7e-87, P = 1.7e-87
  =>sp|P28844|G3P_CURLU GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||DEYDGC glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - fungus (Curvularia lunata) >gi|2601 (X58718)
            glyceraldehyd-3-phosphate dehydrogenase [Curvularia lunata]
            Length = 337
	    Score = 880 (309.8 bits), Expect = 2.2e-87, P = 2.2e-87
  =>gi|1945477 (U96177) glyceraldehyde-3-phosphate dehydrogenase [Onchocerca
            volvulus]
            Length = 339
	    Score = 880 (309.8 bits), Expect = 2.2e-87, P = 2.2e-87
  =>sp|P34920|G3PC_CHOCR GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >pir||S32692 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - red alga (Chondrus crispus) >gi|297454 (X73034) glyceraldehyde
            3-phosphate dehydrogenase (phosphorylating) [Chondrus crispus]
            Length = 335
	    Score = 879 (309.4 bits), Expect = 2.8e-87, P = 2.8e-87
  =>gi|2995612 (U95625) glyceraldehyde 3-phosphate dehydrogenase [Pichia angusta]
            Length = 335
	    Score = 879 (309.4 bits), Expect = 2.8e-87, P = 2.8e-87
  =>sp|P09094|G3PC_TOBAC GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >pir||C24430 glyceraldehyde-3-phosphate dehydrogenase (NADP+)
            (phosphorylating) (EC 1.2.1.13) C, cytosolic - common tobacco
            (fragment) >gi|170241 (M14419) glyceraldehyde-3-phosphate
            dehydrogenase [Nicotiana tabacum]
            Length = 326
	    Score = 876 (308.4 bits), Expect = 5.8e-87, P = 5.8e-87
  =>sp|P32636|G3P2_AGABI GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 2 >pir||S26976
            glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) II -
            cultivated mushroom >gi|166331 (M81728) glyceraldehyde-3-phosphate
            dehydrogenase [Agaricus bisporus]
            Length = 338
	    Score = 875 (308.0 bits), Expect = 7.3e-87, P = 7.3e-87
  =>pir||S43339 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) - red alga
            (Chondrus crispus) >gi|440395 (X73036) glyceraldehyde 3-phosphate
            dehydrogenase (phosphorylating) [Chondrus crispus]
            Length = 335
	    Score = 875 (308.0 bits), Expect = 7.3e-87, P = 7.3e-87
  =>sp|Q01982|G3P_PHACH GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gi|169262 (M81754) glyceraldehyde-3-phosphate dehydrogenase
            [Phanerochaete chrysosporium]
            Length = 337
	    Score = 874 (307.7 bits), Expect = 9.4e-87, P = 9.4e-87
  =>sp|P19089|G3P_CRYPA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GPD-1)
            >pir||DEJJGC glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - chestnut blight fungus >gi|295939 (X53996)
            glyceraldehyde-3-phosphate dehydrogenase [Cryphonectria parasitica]
            Length = 337
	    Score = 873 (307.3 bits), Expect = 1.2e-86, P = 1.2e-86
  =>gnl|PID|e1286668 (AJ005371) Glyceraldehyde-3-phosphate dehydrogenase [Homo
            sapiens]
            Length = 408
	    Score = 872 (307.0 bits), Expect = 1.5e-86, P = 1.5e-86
  =>gnl|PID|e300493 (Y09455) glyceraldehyde-3-phosphate dehydrogenase [Onchocerca
            volvulus]
            Length = 339
	    Score = 871 (306.6 bits), Expect = 1.9e-86, P = 1.9e-86
  =>sp|Q92243|G3P_LYOSH GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gnl|PID|d1014307 (D88426) glyceraldehyde-3-phosphate dehydrogenase
            [Lyophyllum shimeji]
            Length = 337
	    Score = 870 (306.3 bits), Expect = 2.5e-86, P = 2.5e-86
  =>sp|P17330|G3P3_CAEEL GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 3 (GAPDH-3)
            >pir||DEKWG3 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            3 - Caenorhabditis elegans >gi|6745 (X15254) gpd-3 gene product
            [Caenorhabditis elegans] >gi|1206039 (U49941) C. elegans
            glyceraldehyde 3-phosphate dehycrogenase 3 (SP:P17330)
            [Caenorhabditis elegans]
            Length = 341
	    Score = 868 (305.6 bits), Expect = 4.0e-86, P = 4.0e-86
  =>sp|P48812|G3P_BRUMA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gi|603211 (U18137) glyceraldehyde-3-phosphate dehydrogenase
            [Brugia malayi]
            Length = 339
	    Score = 868 (305.6 bits), Expect = 4.0e-86, P = 4.0e-86
  =>gi|1206046 (U49941) C. elegans glyceraldehyde 3-phosphate dehydrogenase 2
            (SP:P17329) [Caenorhabditis elegans]
            Length = 341
	    Score = 868 (305.6 bits), Expect = 4.0e-86, P = 4.0e-86
  =>sp|P51469|G3P_XENLA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gi|1136599 (U41753) glyceraldehyde 3-phosphate dehydrogenase
            [Xenopus laevis]
            Length = 333
	    Score = 867 (305.2 bits), Expect = 5.2e-86, P = 5.2e-86
  =>gi|497413 (U09964) glyceraldehyde 3-phosphate dehydrogenase [Mus musculus]
           Length = 438
	    Score = 866 (304.8 bits), Expect = 6.6e-86, P = 6.6e-86
  =>sp|Q64467|G3PT_MOUSE GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, TESTIS-SPECIFIC
            (GAPDH) >pir||I49681 glyceraldehyde-3-phosphate dehydrogenase (EC
            1.2.1.12) - mouse >gi|567204 (M60978) glyceraldehyde 3-phosphate
            dehydrogenase [Mus musculus]
            Length = 440
	    Score = 866 (304.8 bits), Expect = 6.6e-86, P = 6.6e-86
  =>gi|1532189 (U67457) glyceraldehyde 3-phosphate dehydrogenase [Neurospora
            crassa]
            Length = 338
	    Score = 866 (304.8 bits), Expect = 6.6e-86, P = 6.6e-86
  =>sp|P35143|G3P_COLGL GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||JN0452 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - anthracnose fungus (Colletotrichum gloeosporioides) >gi|167294
            (M88109) glyceraldehyde-3-phosphate dehydrogenase [Colletotrichum
            gloeosporioides] >gi|167296 (M93427) glyceraldehyde 3-phosphate
            dehydrogenase [Colletotrichum gloeosporioides]
            Length = 338
	    Score = 865 (304.5 bits), Expect = 8.4e-86, P = 8.4e-86
  =>sp|P17244|G3P_CRIGR GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||DEHYG glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - Chinese hamster >gi|49435 (X52123) glyceraldehyde-3-phosphate
            dehydrogenase (AA 1-333) [Cricetulus griseus]
            Length = 333
	    Score = 865 (304.5 bits), Expect = 8.4e-86, P = 8.4e-86
  =>sp|P32810|G3P3_CAEBR GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 3 (GAPDH-3)
            >pir||JH0770 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            3 - Caenorhabditis briggsae
            Length = 341
	    Score = 865 (304.5 bits), Expect = 8.4e-86, P = 8.4e-86
  =>sp|Q92263|G3P_PICPA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gi|1518786 (U62648) glyceraldehyde-3-phosphate dehydrogenase
            [Pichia pastoris]
            Length = 333
	    Score = 865 (304.5 bits), Expect = 8.4e-86, P = 8.4e-86
  =>gi|1912312 (U39897) glycolytic glyceraldehyde-3-phosphate dehydrogenase
            [Pyrenomonas salina]
            Length = 339
	    Score = 865 (304.5 bits), Expect = 8.4e-86, P = 8.4e-86
  =>sp|P00355|G3P_PIG GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            Length = 333
	    Score = 865 (304.5 bits), Expect = 8.4e-86, P = 8.4e-86
  =>sp|Q05025|G3P_COTJA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||JN0678 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - quail >gi|62616 (Z19086) glyceraldehydephosphate dehydrogenase
            [Coturnix coturnix]
            Length = 333
	    Score = 864 (304.1 bits), Expect = 1.1e-85, P = 1.1e-85
  =>gi|833761 (M88062) glyceraldehyde 3-phosphate dehydrogenase [Giardia
           intestinalis]
           Length = 336
	    Score = 864 (304.1 bits), Expect = 1.1e-85, P = 1.1e-85
  =>sp|P53429|G3P1_GIALA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 1 (GAPDH)
            Length = 337
	    Score = 864 (304.1 bits), Expect = 1.1e-85, P = 1.1e-85
  =>sp|P00356|G3P_CHICK GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            Length = 333
	    Score = 863 (303.8 bits), Expect = 1.4e-85, P = 1.4e-85
  =>sp|P46406|G3P_RABIT GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||JC4309 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - rabbit >gi|406107 (L23961) glyceraldehyde-3-phosphate
            dehydrogenase [Oryctolagus cuniculus]
            Length = 333
	    Score = 862 (303.4 bits), Expect = 1.8e-85, P = 1.8e-85
  =>sp|P17329|G3P2_CAEEL GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 2 (GAPDH-2)
            >pir||DEKWG2 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            2 - Caenorhabditis elegans >gi|6744 (X15254) gpd-2 gene product
            [Caenorhabditis elegans]
            Length = 341
	    Score = 861 (303.1 bits), Expect = 2.2e-85, P = 2.2e-85
  =>sp|P54118|G3P_NEUCR GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            (CLOCK-CONTROLLED PROTEIN 7) >gi|1326237 (U56397)
            glyceraldehyde-3-phosphate dehydrogenase [Neurospora crassa]
            Length = 338
	    Score = 861 (303.1 bits), Expect = 2.2e-85, P = 2.2e-85
  =>sp|P04970|G3P1_CAEEL GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 1 (GAPDH-1)
            >pir||DEKWG1 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            1 - Caenorhabditis elegans >gi|6737 (X04818)
            glyceraldehyde-3-phosphate dehydrogenase [Caenorhabditis elegans]
            >gi|6742 (X52674) gpd-1 gene product [Caenorhabditis elegans]
            >gi|780207 (Z49070) T09F3.3 [Caenorhabditis elegans]
            Length = 341
	    Score = 859 (302.4 bits), Expect = 3.6e-85, P = 3.6e-85
  =>gi|1912310 (U39873) glycolytic glyceraldehyde-3-phosphate dehydrogenase
            [Guillardia theta]
            Length = 339
	    Score = 859 (302.4 bits), Expect = 3.6e-85, P = 3.6e-85
  =>sp|P17331|G3P4_CAEEL GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 4 (GAPDH-4)
            >pir||DEKWG4 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            4 - Caenorhabditis elegans >gi|6747 (X52673) gpd-4 gene product
            [Caenorhabditis elegans] >gi|755117 (Z48783) F33H1.2
            [Caenorhabditis elegans]
            Length = 341
	    Score = 858 (302.0 bits), Expect = 4.6e-85, P = 4.6e-85
  =>sp|P16858|G3P_MOUSE GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||DEMSG glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - mouse >gi|309243 (M32599) glyceraldehyde-3-phosphate
            dehydrogenase [Mus musculus]
            Length = 333
	    Score = 856 (301.3 bits), Expect = 7.6e-85, P = 7.6e-85
  =>sp|P32809|G3P2_CAEBR GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 2 (GAPDH-2)
            >pir||JH0769 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            2 - Caenorhabditis briggsae
            Length = 341
	    Score = 856 (301.3 bits), Expect = 7.6e-85, P = 7.6e-85
  =>pir||DECHG3 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) - chicken
            >gi|211801 (K01458) glceraldehyde-3-phosphate dehydrogenase [Gallus
            gallus] >gnl|PID|e275379 (V00407) glyceraldehyde-3-phosphate
            dehydrogenase [Gallus gallus]
            Length = 333
	    Score = 856 (301.3 bits), Expect = 7.6e-85, P = 7.6e-85
  =>gi|211797 (M11213) glyceraldehyde-3-phosphate dehydrogenase [Gallus gallus]
           Length = 333
	    Score = 856 (301.3 bits), Expect = 7.6e-85, P = 7.6e-85
  =>sp|P04406|G3P2_HUMAN GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, LIVER
            >pir||DEHUG3 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - human >gi|182861 (M17851) glyceraldehyde-3-phosphate
            dehydrogenase [Homo sapiens] >gi|182863 (J02642) glyceraldehyde
            3-phosphate dehydrogenase (EC 1.2.1.12) [Homo sapiens] >gi|182977
            (M33197) glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            [Homo sapiens] >gi|182981 (J04038) glyceraldehyde-3-phosphate
            dehydrogenase [Homo sapiens] >prf||1203217A
            dehydrogenase,glyceraldehydephosphate [Homo sapiens]
            Length = 335
	    Score = 854 (300.6 bits), Expect = 1.2e-84, P = 1.2e-84
  =>gi|31645 (X01677) glyceraldehyde-3-phosphate dehydrogenase [Homo sapiens]
          Length = 335
	    Score = 854 (300.6 bits), Expect = 1.2e-84, P = 1.2e-84
  =>pir||DEPGG3 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) - pig
            Length = 332
	    Score = 854 (300.6 bits), Expect = 1.2e-84, P = 1.2e-84
  =>gi|204249 (M17701) glyceraldehyde-3-phosphate-dehydrogenase (EC 1.2.1.12)
           [Rattus norvegicus]
           Length = 333
	    Score = 853 (300.3 bits), Expect = 1.6e-84, P = 1.6e-84
  =>prf||681085A dehydrogenase,glyceraldehydephosphate [Sus scrofa domestica]
            Length = 332
	    Score = 853 (300.3 bits), Expect = 1.6e-84, P = 1.6e-84
  =>pir||S22150 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) - fungus
            (Cochliobolus heterostrophus)
            Length = 337
	    Score = 791 (278.4 bits), Expect = 1.6e-84, Sum P(2) = 1.6e-84
  =>gi|2687661 (AF036934) glyceraldehyde-3-phosphate dehydrogenase [Columba livia]
            Length = 333
	    Score = 851 (299.6 bits), Expect = 2.6e-84, P = 2.6e-84
  =>gi|2282013 (AC002389) GAPDH-2 like [Homo sapiens]
            Length = 417
	    Score = 847 (298.2 bits), Expect = 6.8e-84, P = 6.8e-84
  =>gi|3726 (V01302) Gap-dehydrogenase [Saccharomyces cerevisiae]
         Length = 332
	    Score = 845 (297.5 bits), Expect = 1.1e-83, P = 1.1e-83
  =>sp|P00358|G3P2_YEAST GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 2 (GAPDH 2)
            >pir||DEBYG1 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            2 - yeast (Saccharomyces cerevisiae) >gi|3936 (X60157)
            glyceraldehyde 3-phosphate dehydrogenase [Saccharomyces cerevisiae]
            >gi|854582 (X87611) glyceraldehyde-3-phosphate dehydrogenase
            [Saccharomyces cerevisiae] >gi|1015636 (Z49509) ORF YJR009c
            [Saccharomyces cerevisiae]
            Length = 332
	    Score = 845 (297.5 bits), Expect = 1.1e-83, P = 1.1e-83
  =>sp|P00360|G3P1_YEAST GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 1 (GAPDH 1)
            >pir||DEBYG3 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            1 - yeast (Saccharomyces cerevisiae) >gi|1008189 (Z49327) ORF
            YJL052w [Saccharomyces cerevisiae]
            Length = 332
	    Score = 845 (297.5 bits), Expect = 1.1e-83, P = 1.1e-83
  =>sp|P20287|G3P_SCHMA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH) (MAJOR
            LARVAL SURFACE ANTIGEN) (P-37) >pir||JL0121
            glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) - fluke
            (Schistosoma mansoni)
            Length = 338
	    Score = 844 (297.1 bits), Expect = 1.4e-83, P = 1.4e-83
  =>gi|2586046 (AF027130) glyceraldehyde-3-phosphate dehydrogenase [Oncorhynchus
            mykiss]
            Length = 335
	    Score = 844 (297.1 bits), Expect = 1.4e-83, P = 1.4e-83
  =>pir||JS0164 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) - Bacillus
            stearothermophilus >gi|142952 (M24493) glyceraldehyde-3-phosphate
            dehydrogenase [Bacillus stearothermophilus]
            Length = 335
	    Score = 842 (296.4 bits), Expect = 2.3e-83, P = 2.3e-83
  =>sp|P00354|G3P1_HUMAN GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, MUSCLE
            >pdb|3GPD|R Homo sapiens >pdb|3GPD|G Homo sapiens
            Length = 334
	    Score = 842 (296.4 bits), Expect = 2.3e-83, P = 2.3e-83
  =>sp|P04797|G3P_RAT GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH) >pir||DERTG
            glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) - rat
            >gi|56188 (X02231) GAPDH (aa 1-333) [Rattus norvegicus]
            Length = 333
	    Score = 842 (296.4 bits), Expect = 2.3e-83, P = 2.3e-83
  =>gi|2078298 (U97257) glyceraldehyde 3-phosphate dehydrogenase [Lycopersicon
            esculentum]
            Length = 294
	    Score = 841 (296.0 bits), Expect = 2.9e-83, P = 2.9e-83
  =>gi|2407184 (AF017079) glyceraldehyde 3-phosphate dehydrogenase [Sus scrofa]
            Length = 333
	    Score = 839 (295.3 bits), Expect = 4.8e-83, P = 4.8e-83
  =>pdb|1GD1|O Bacillus stearothermophilus >pdb|1GD1|P Bacillus stearothermophilus
            >pdb|1GD1|Q Bacillus stearothermophilus >pdb|1GD1|R Bacillus
            stearothermophilus >pdb|2GD1|O Bacillus stearothermophilus
            >pdb|2GD1|P Bacillus stearothermophilus >pdb|2GD1|Q Bacillus
            stearothermophilus >pdb|2GD1|R Bacillus stearothermophilus
            Length = 334
	    Score = 838 (295.0 bits), Expect = 6.1e-83, P = 6.1e-83
  =>sp|P00359|G3P3_YEAST GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 3 (GAPDH 3)
            >pir||DEBYG2 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            3 - yeast (Saccharomyces cerevisiae) >gi|755797 (X82408) G7576
            [Saccharomyces cerevisiae] >gnl|PID|e243731 (Z72977) ORF YGR192c
            [Saccharomyces cerevisiae]
            Length = 332
	    Score = 837 (294.6 bits), Expect = 7.8e-83, P = 7.8e-83
  =>sp|P00362|G3P_BACST GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            Length = 336
	    Score = 836 (294.3 bits), Expect = 1.0e-82, P = 1.0e-82
  =>gi|160996 (L09549) glyceraldehyde-3-phosphate dehydrogenase [Schistosoma
           japonicum]
           Length = 338
	    Score = 836 (294.3 bits), Expect = 1.0e-82, P = 1.0e-82
  =>pdb|1DBV|O Bacillus stearothermophilus >pdb|1DBV|P Bacillus stearothermophilus
            >pdb|1DBV|Q Bacillus stearothermophilus >pdb|1DBV|R Bacillus
            stearothermophilus >pdb|2DBV|O Bacillus stearothermophilus
            >pdb|2DBV|P Bacillus stearothermophilus >pdb|2DBV|Q Bacillus
            stearothermophilus >pdb|2DBV|R Bacillus stearothermophilus
            Length = 334
	    Score = 835 (293.9 bits), Expect = 1.3e-82, P = 1.3e-82
  =>gi|3720 (V01300) reading frame [Saccharomyces cerevisiae] >gi|171541 (J01324)
         glyceraldehyde-3-phosphate dehydrogenase (G3PD) [Saccharomyces
         cerevisiae]
         Length = 332
	    Score = 834 (293.6 bits), Expect = 1.6e-82, P = 1.6e-82
  =>sp|P08477|G3PC_HORVU GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            >pir||A24159 glyceraldehyde-3-phosphate dehydrogenase (EC
            1.2.1.12), cytosolic - barley (fragment) >gi|167044 (M36650)
            glyceraldehyde-3-phosphate dehydrogenase [Hordeum vulgare]
            >prf||1301218A dehydrogenase,glyceraldehydephosphate [Hordeum
            vulgare var. distichum]
            Length = 305
	    Score = 833 (293.2 bits), Expect = 2.1e-82, P = 2.1e-82
  =>pdb|1GPD|G Homarus americanus >pdb|1GPD|R Homarus americanus
            Length = 334
	    Score = 832 (292.9 bits), Expect = 2.6e-82, P = 2.6e-82
  =>pdb|4GPD|1 Homarus americanus >pdb|4GPD|2 Homarus americanus >pdb|4GPD|3
            Homarus americanus >pdb|4GPD|4 Homarus americanus
            Length = 333
	    Score = 832 (292.9 bits), Expect = 2.6e-82, P = 2.6e-82
  =>sp|P00357|G3P_HOMAM GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||DELOG3 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - American lobster >prf||671058A
            dehydrogenase,glyceraldehydephosphate [Pleocyemata fam. gen. sp.]
            Length = 333
	    Score = 832 (292.9 bits), Expect = 2.6e-82, P = 2.6e-82
  =>gi|1916689 (U75511) glyceraldehyde-3-phosphate dehydrogenase [Schistosoma
            japonicum]
            Length = 338
	    Score = 832 (292.9 bits), Expect = 2.6e-82, P = 2.6e-82
  =>pir||DEBSGF glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) - Bacillus
            stearothermophilus >prf||770550A
            dehydrogenase,glyceraldehydephosphate [Bacillus stearothermophilus]
            Length = 334
	    Score = 829 (291.8 bits), Expect = 5.5e-82, P = 5.5e-82
  =>sp|P17819|G3P_KLULA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||DEVKGL glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - yeast (Kluyveromyces marxianus var. lactis) >gi|2824 (X52871)
            glyceraldehyde-3-phosphate dehydrogenase (AA 1-329) [Kluyveromyces
            lactis]
            Length = 329
	    Score = 828 (291.5 bits), Expect = 7.0e-82, P = 7.0e-82
  =>sp|P10096|G3P_BOVIN GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            Length = 320
	    Score = 828 (291.5 bits), Expect = 7.0e-82, P = 7.0e-82
  =>pdb|3DBV|O Bacillus stearothermophilus >pdb|3DBV|P Bacillus stearothermophilus
            >pdb|3DBV|Q Bacillus stearothermophilus >pdb|3DBV|R Bacillus
            stearothermophilus >pdb|4DBV|O Bacillus stearothermophilus
            >pdb|4DBV|P Bacillus stearothermophilus >pdb|4DBV|Q Bacillus
            stearothermophilus >pdb|4DBV|R Bacillus stearothermophilus
            Length = 334
	    Score = 827 (291.1 bits), Expect = 9.0e-82, P = 9.0e-82
  =>gi|2293134 (AF004522) glyceraldehyde-3-phosphate-dehydrogenase [Globodera
            rostochiensis]
            Length = 324
	    Score = 823 (289.7 bits), Expect = 2.4e-81, P = 2.4e-81
  =>sp|P09124|G3P1_BACSU GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 1 (GAPDH)
            >pir||DEBSG glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - Bacillus subtilis >gi|39921 (X13011) glyceraldehyde-3-phosphate
            dehydrogenase (AA 1 - 335) [Bacillus subtilis] >gnl|PID|e1186082
            (Z99121) glyceraldehyde-3-phosphate dehydrogenase [Bacillus
            subtilis]
            Length = 335
	    Score = 821 (289.0 bits), Expect = 3.9e-81, P = 3.9e-81
  =>gi|624679 (U19101) glyceraldehyde-3-phosphate dehydrogenase [Echinococcus
           multilocularis]
           Length = 336
	    Score = 818 (288.0 bits), Expect = 8.1e-81, P = 8.1e-81
  =>pir||JQ1953 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) - Bacillus
            megaterium >gi|39633 (X54520) GAPDH protein (AA 1 - 335) [Bacillus
            megaterium] >gi|143317 (M87647) glyceraldehyde-3-phosphate
            dehydrogenase [Bacillus megaterium]
            Length = 335
	    Score = 817 (287.6 bits), Expect = 1.0e-80, P = 1.0e-80
  =>gi|2055382 (U40033) glyceraldehyde-3-phosphate dehydrogenase precursor
            [Pyrenomonas salina]
            Length = 388
	    Score = 817 (287.6 bits), Expect = 1.0e-80, P = 1.0e-80
  =>gi|1931619 (U93208) glyceraldehyde 3-phosphate dehydrogenase [Lycopersicon
            esculentum]
            Length = 295
	    Score = 815 (286.9 bits), Expect = 1.7e-80, P = 1.7e-80
  =>sp|P32635|G3P1_AGABI GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 1 >pir||S26975
            glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) I -
            cultivated mushroom >gi|166329 (M81727) glyceraldehyde-3-phosphate
            dehydrogenase [Agaricus bisporus]
            Length = 337
	    Score = 814 (286.5 bits), Expect = 2.1e-80, P = 2.1e-80
  =>sp|P80534|G3P1_JACOR GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, MUSCLE (GAPDH)
            Length = 363
	    Score = 814 (286.5 bits), Expect = 2.1e-80, P = 2.1e-80
  =>sp|P07486|G3P1_DROME GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE I (GAPDH I)
            >pir||A22366 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            1 - fruit fly (Drosophila melanogaster) >gi|157476 (M11254)
            glyceraldehyde-3-phosphate dehydrogenase (Gadph-1) protein (EC
            1.2.1.12) [Drosophila melanogaster]
            Length = 332
	    Score = 812 (285.8 bits), Expect = 3.5e-80, P = 3.5e-80
  =>sp|P23722|G3P_BACME GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||S12696 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - Bacillus megaterium
            Length = 335
	    Score = 812 (285.8 bits), Expect = 3.5e-80, P = 3.5e-80
  =>gi|3724 (V01301) reading frame [Saccharomyces cerevisiae]
         Length = 332
	    Score = 811 (285.5 bits), Expect = 4.4e-80, P = 4.4e-80
  =>gi|2055380 (U40032) glyceraldehyde-3-phosphate dehydrogenase precursor
            [Guillardia theta]
            Length = 386
	    Score = 809 (284.8 bits), Expect = 7.2e-80, P = 7.2e-80
  =>sp|P07487|G3P2_DROME GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE II (GAPDH II)
            >pir||B22366 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            2 - fruit fly (Drosophila melanogaster) >gi|157478 (M11255)
            glyceraldehyde-3-phosphate dehydrogenase (Gadph-2) protein (EC
            1.2.1.12) [Drosophila melanogaster]
            Length = 332
	    Score = 808 (284.4 bits), Expect = 9.2e-80, P = 9.2e-80
  =>pir||S57279 glyceraldehyde-3-phosphate dehydrogenase 1 - yeast (Kluyveromyces
            marxianus)
            Length = 331
	    Score = 805 (283.4 bits), Expect = 1.9e-79, P = 1.9e-79
  =>sp|O34425|G3P2_BACSU GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 2 (GAPDH)
            >gi|2293277 (AF008220) glyceraldehyde-3-P-dehydrogenase [Bacillus
            subtilis] >gnl|PID|e1184151 (Z99118) glyceraldehyde-3-phosphate
            dehydrogenase [Bacillus subtilis]
            Length = 340
	    Score = 801 (282.0 bits), Expect = 5.1e-79, P = 5.1e-79
  =>gnl|PID|e159402 (X87226) NAD-dependent glyceraldehyde 3-phosphate
            dehydrogenase (phosphorylating) [Jaculus orientalis]
            Length = 309
	    Score = 799 (281.3 bits), Expect = 8.3e-79, P = 8.3e-79
  =>sp|Q01597|G3P_DROHY GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||S24630 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - fruit fly (Drosophila hydei) >gi|11178 (Z14144)
            glyceraldehyde-3-phosphate dehydrogenase [Drosophila hydei]
            Length = 332
	    Score = 798 (280.9 bits), Expect = 1.1e-78, P = 1.1e-78
  =>gi|1561723 (U55244) glyceraldehyde-3-phosphate dehydrogenase [Naegleria
            andersoni]
            Length = 298
	    Score = 797 (280.6 bits), Expect = 1.4e-78, P = 1.4e-78
  =>gi|2983548 (AE000721) glyceraldehyde-3-phosphate dehydrogenase [Aquifex
            aeolicus]
            Length = 342
	    Score = 796 (280.2 bits), Expect = 1.7e-78, P = 1.7e-78
  =>gi|2749881 (U82749) glyceraldehyde-3-phosphate dehydrogenase homolog
            [Mycobacterium avium]
            Length = 339
	    Score = 795 (279.9 bits), Expect = 2.2e-78, P = 2.2e-78
  =>sp|P54117|G3P_COLLN GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gi|2209089 (AF000310) glyceraldehyde-3-phosphate dehydrogenase
            [Colletotrichum lindemuthianum]
            Length = 337
	    Score = 793 (279.1 bits), Expect = 3.6e-78, P = 3.6e-78
  =>sp|Q01558|G3PC_LEIME GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            (GAPDH) >pir||B48445 glyceraldehyde-3-phosphate dehydrogenase (EC
            1.2.1.12) - Leishmania mexicana >gi|9553 (X65220) glyceraldehyde
            3-phosphate dehydrogenase [Leishmania mexicana]
            Length = 331
	    Score = 792 (278.8 bits), Expect = 4.6e-78, P = 4.6e-78
  =>prf||721947A glyceraldehydephosphate dehydrogenase [Saccharomycetales]
            Length = 331
	    Score = 791 (278.4 bits), Expect = 5.8e-78, P = 5.8e-78
  =>sp|P17729|G3P1_TRIKO GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 1 (GAPDH1)
            >gnl|PID|d1003902 (D14519) Glyceraldehydephosphate Dehydrogenase
            [Hypocrea ceramica]
            Length = 336
	    Score = 787 (277.0 bits), Expect = 1.6e-77, P = 1.6e-77
  =>pir||S29813 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) - imperfect
            fungus (Trichoderma koningii) >prf||1908209A
            glyceraldehyde-3-phosphate dehydrogenase:ISOTYPE=I [Trichoderma
            koningii]
            Length = 335
	    Score = 787 (277.0 bits), Expect = 1.6e-77, P = 1.6e-77
  =>gi|158951 (M89790) glyceraldehyde-phosphate dehydrogenase [Entamoeba
           histolytica]
           Length = 298
	    Score = 787 (277.0 bits), Expect = 1.6e-77, P = 1.6e-77
  =>sp|Q46450|G3P_CHLTR GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gi|1791251 (U83198) glyceraldehyde-3-phosphate dehydrogenase
            [Chlamydia trachomatis]
            Length = 341
	    Score = 786 (276.7 bits), Expect = 2.0e-77, P = 2.0e-77
  =>sp|P51640|G3P_MESAU GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gi|506188 (U10983) glyceraldehyde-3-phosphate dehydrogenase
            [Mesocricetus auratus]
            Length = 312
	    Score = 784 (276.0 bits), Expect = 3.2e-77, P = 3.2e-77
  =>gi|1841758 (U85042) glyceraldehyde-phosphate-dehydrogenase [Bos taurus]
            Length = 311
	    Score = 783 (275.6 bits), Expect = 4.1e-77, P = 4.1e-77
  =>sp|P10097|G3PC_TRYBB GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CYTOSOLIC
            (GAPDH) >pir||DEUTGC glyceraldehyde-3-phosphate dehydrogenase (EC
            1.2.1.12), cytosolic - Trypanosoma brucei >gi|10407 (X53472)
            glyceraldehyde 3-phosphate dehydrogenase [Trypanosoma (Trypanozoon)
            brucei]
            Length = 331
	    Score = 775 (272.8 bits), Expect = 2.9e-76, P = 2.9e-76
  =>sp|P06977|G3P1_ECOLI GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A (GAPDH-A)
            >pir||DEECG3 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            A - Escherichia coli >gi|41539 (X02662) put. GAPDH (aa 1-332)
            [Escherichia coli] >gnl|PID|d1016299 (D90821)
            Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) A
            [Escherichia coli] >gi|1788079 (AE000273) glyceraldehyde
            3-phosphate dehydrogenase A [Escherichia coli]
            Length = 331
	    Score = 775 (272.8 bits), Expect = 2.9e-76, P = 2.9e-76
  =>pdb|1GAD|O Escherichia coli >pdb|1GAD|P Escherichia coli
            Length = 330
	    Score = 775 (272.8 bits), Expect = 2.9e-76, P = 2.9e-76
  =>bbs|173619 (S80252) glyceraldehyde-3-phosphate dehydrogenase type 2, GAP2p
            [Kluyveromyces marxianus, ATCC 10022, Peptide, 330 aa]
            [Kluyveromyces marxianus]
            Length = 330
	    Score = 774 (272.5 bits), Expect = 3.7e-76, P = 3.7e-76
  =>sp|Q01077|G3P2_KLUMA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 2 (GAPDH 2)
            >pir||S57280 glyceraldehyde-3-phosphate dehydrogenase 2 - yeast
            (Kluyveromyces marxianus)
            Length = 331
	    Score = 774 (272.5 bits), Expect = 3.7e-76, P = 3.7e-76
  =>sp|O06822|G3P_MYCTU GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gnl|PID|e318870 (Z95844) gap [Mycobacterium tuberculosis]
            Length = 339
	    Score = 774 (272.5 bits), Expect = 3.7e-76, P = 3.7e-76
  =>gi|3328942 (AE001323) Glyceraldehyde-3-P Dehyrogenase [Chlamydia trachomatis]
            Length = 334
	    Score = 773 (272.1 bits), Expect = 4.7e-76, P = 4.7e-76
  =>pir||S57281 glyceraldehyde-3-phosphate dehydrogenase 3 - yeast (Kluyveromyces
            marxianus)
            Length = 331
	    Score = 771 (271.4 bits), Expect = 7.7e-76, P = 7.7e-76
  =>pir||S72667 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) - potato
            (fragment) >gi|755187 (U17005) glyceraldehyde 3-phosphate
            dehydrogenase [Solanum tuberosum]
            Length = 300
	    Score = 771 (271.4 bits), Expect = 7.7e-76, P = 7.7e-76
  =>pdb|1GAE|O Escherichia coli >pdb|1GAE|P Escherichia coli
            Length = 330
	    Score = 769 (270.7 bits), Expect = 1.3e-75, P = 1.3e-75
  =>sp|P17721|G3P_THEMA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||DEHGGT glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - Thermotoga maritima
            Length = 333
	    Score = 768 (270.3 bits), Expect = 1.6e-75, P = 1.6e-75
  =>pdb|1HDG|O Thermotoga maritima >pdb|1HDG|Q Thermotoga maritima >gi|939978
            (X72629) D-glyceraldehyde-3-phosphate dehydrogenase [Thermotoga
            maritima]
            Length = 332
	    Score = 768 (270.3 bits), Expect = 1.6e-75, P = 1.6e-75
  =>sp|P00361|G3P_THEAQ GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||DETWG3 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - Thermus aquaticus >pdb|1CER|O Thermus aquaticus >pdb|1CER|P
            Thermus aquaticus >pdb|1CER|Q Thermus aquaticus >pdb|1CER|R Thermus
            aquaticus >gi|48121 (X16595) glyceraldehyde-3-phosphate
            dehydrogenase (AA 1-331) [Thermus aquaticus]
            Length = 331
	    Score = 766 (269.6 bits), Expect = 2.6e-75, P = 2.6e-75
  =>pir||S69185 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) - potato
            (fragment)
            Length = 300
	    Score = 766 (269.6 bits), Expect = 2.6e-75, P = 2.6e-75
  =>gnl|PID|d1019618 (D90822) Glyceraldehyde-3-phosphate dehydrogenase (EC
            1.2.1.12) A [Escherichia coli]
            Length = 303
	    Score = 764 (268.9 bits), Expect = 4.2e-75, P = 4.2e-75
  =>sp|P53430|G3P_MONAN GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gnl|PID|e218057 (Z68498) glyceraldehyde-3-phosphate dehydrogenase
            [Monascus anka]
            Length = 331
	    Score = 761 (267.9 bits), Expect = 8.8e-75, P = 8.8e-75
  =>pir||PQ0178 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) 2 - maize
            (fragment) >gi|293889 (L13432) glyceraldehyde-3-phosphate
            dehydrogenase [Zea mays]
            Length = 247
	    Score = 759 (267.2 bits), Expect = 1.4e-74, P = 1.4e-74
  =>sp|P44304|G3P_HAEIN GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||G64041 glyceraldehyde-3-phosphate dehydrogenase (gapdH)
            homolog - Haemophilus influenzae (strain Rd KW20) >gi|3212176
            (U32686) glyceraldehyde-3-phosphate dehydrogenase (gapdH)
            [Haemophilus influenzae Rd]
            Length = 339
	    Score = 756 (266.1 bits), Expect = 3.0e-74, P = 3.0e-74
  =>sp|P46713|G3P_MYCLE GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||S72763 gyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            B - Mycobacterium leprae >gi|466885 (U00013) gapA; B1496_C3_199
            [Mycobacterium leprae]
            Length = 339
	    Score = 755 (265.8 bits), Expect = 3.8e-74, P = 3.8e-74
  =>sp|P34917|G3P2_ANAVA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 2 >pir||I39603
            glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) 2 - Anabaena
            variabilis >gi|410111 (L07498) glyceraldehyde-3-phosphate
            dehydrogenase [Anabaena variabilis]
            Length = 336
	    Score = 750 (264.0 bits), Expect = 1.3e-73, P = 1.3e-73
  =>gi|468157 (U07750) glyceraldehyde 3-phosphate dehydrogenase [Escherichia coli]
           >gi|468159 (U07751) glyceraldehyde 3-phosphate dehydrogenase
           [Escherichia coli] >gi|468161 (U07752) glyceraldehyde 3-phosphate
           dehydrogenase [Escherichia coli] >gi|468163 (U07754) glyceraldehyde
           3-phosphate dehydrogenase [Escherichia coli] >gi|468183 (U07765)
           glyceraldehyde 3-phosphate dehydrogenase [Escherichia coli]
           >gi|468185 (U07768) glyceraldehyde 3-phosphate dehydrogenase
           [Escherichia coli] >gi|468187 (U07769) glyceraldehyde 3-phosphate
           dehydrogenase [Escherichia coli] >gi|468189 (U07770) glyceraldehyde
           3-phosphate dehydrogenase [Escherichia coli] >gi|468191 (U07771)
           glyceraldehyde 3-phosphate dehydrogenase [Escherichia coli]
           >gi|468193 (U07772) glyceraldehyde 3-phosphate dehydrogenase
           [Escherichia coli] >gi|468195 (U07773) glyceraldehyde 3-phosphate
           dehydrogenase [Escherichia coli]
           Length = 312
	    Score = 748 (263.3 bits), Expect = 2.1e-73, P = 2.1e-73
  =>gi|2655171 (AF025810) glyceraldehyde-3-phosphate dehydrogenase-2 [Drosophila
            subobscura]
            Length = 304
	    Score = 745 (262.3 bits), Expect = 4.4e-73, P = 4.4e-73
  =>sp|P15115|G3P_BACCO GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            Length = 336
	    Score = 744 (261.9 bits), Expect = 5.6e-73, P = 5.6e-73
  =>sp|P09316|G3P_ZYMMO GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||DEZYG3 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - Zymomonas mobilis >gi|155585 (M18802) glyceraldehyde-3-phosphate
            dehydrogenase [Zymomonas mobilis]
            Length = 337
	    Score = 744 (261.9 bits), Expect = 5.6e-73, P = 5.6e-73
  =>gi|2655169 (AF025809) glyceraldehyde-3-phosphate dehydrogenase-2 [Drosophila
            pseudoobscura]
            Length = 304
	    Score = 741 (260.8 bits), Expect = 1.2e-72, P = 1.2e-72
  =>sp|Q00301|G3P_BOLED GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gi|929979 (U30625) glycerol-3-phosphate dehydrogenase [Boletus
            edulis]
            Length = 291
	    Score = 741 (260.8 bits), Expect = 1.2e-72, P = 1.2e-72
  =>sp|P51009|G3P_XANFL GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gi|1144353 (U33064) glyceraldehyde-3-phosphate dehydrogenase
            [Xanthobacter flavus]
            Length = 335
	    Score = 741 (260.8 bits), Expect = 1.2e-72, P = 1.2e-72
  =>pir||S71129 glyceraldehyde 3-phosphate dehydrogenase (NADH+) (EC 1.2.1.9) -
            Synechococcus sp. (strain 7942) (fragment) >gnl|PID|d1010245
            (D61379) glyceraldehyde 3-phosphate dehydrogenase [Synechococcus
            sp.]
            Length = 380
	    Score = 740 (260.5 bits), Expect = 1.5e-72, P = 1.5e-72
  =>sp|P50321|G3PC_ALCEU GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, CHROMOSOMAL
            >pir||I39550 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - Alcaligenes eutrophus >gi|976364 (U12422)
            glyceraldehyde-3-phosphate dehydrogenase [Alcaligenes eutrophus]
            Length = 336
	    Score = 737 (259.4 bits), Expect = 3.1e-72, P = 3.1e-72
  =>pir||S54141 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
            (EC 1.2.1.13) - Synechocystis sp >gi|785046 (X86376)
            glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
            [Synechocystis sp.] >gnl|PID|d1019366 (D90916)
            glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
            [Synechocystis sp.]
            Length = 337
	    Score = 736 (259.1 bits), Expect = 3.9e-72, P = 3.9e-72
  =>gi|149197 (M66869) glyceraldehyde-3-phosphate dehydrogenase [Klebsiella
           pneumoniae]
           Length = 308
	    Score = 735 (258.7 bits), Expect = 5.0e-72, P = 5.0e-72
  =>gi|154057 (M66855) glyceraldehyde-3-phosphate dehydrogenase [Salmonella sp.]
           >gi|154059 (M66856) glyceraldehyde-3-phosphate dehydrogenase
           [Salmonella sp.]
           Length = 308
	    Score = 735 (258.7 bits), Expect = 5.0e-72, P = 5.0e-72
  =>sp|Q59800|G3P_STRAU GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||JC4373 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - Streptomyces aureofaciens >gi|706953 (U21191)
            glyceraldehyde-3-phosphate dehydrogenase [Streptomyces
            aureofaciens]
            Length = 332
	    Score = 735 (258.7 bits), Expect = 5.0e-72, P = 5.0e-72
  =>sp|P50322|G3PP_ALCEU GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, PLASMID
            >pir||I39553 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - Alcaligenes eutrophus >gi|976368 (U12423)
            glyceraldehyde-3-phosphate dehydrogenase [Alcaligenes eutrophus]
            Length = 336
	    Score = 735 (258.7 bits), Expect = 5.0e-72, P = 5.0e-72
  =>gi|2623266 (AF030943) glyceraldehyde 3-phosphate dehydrogenase [Ovis aries]
            Length = 278
	    Score = 735 (258.7 bits), Expect = 5.0e-72, P = 5.0e-72
  =>sp|Q59199|G3P_BACFR GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gi|1098567 (U27541) glyceraldehyde 3-phosphate dehydrogenase
            [Bacteroides fragilis]
            Length = 299
	    Score = 734 (258.4 bits), Expect = 6.4e-72, P = 6.4e-72
  =>gi|154061 (M66857) glyceraldehyde-3-phosphate dehydrogenase [Salmonella sp.]
           >gi|154063 (M66858) glyceraldehyde-3-phosphate dehydrogenase
           [Salmonella sp.]
           Length = 308
	    Score = 730 (257.0 bits), Expect = 1.7e-71, P = 1.7e-71
  =>gi|154067 (M66860) glyceraldehyde-3-phosphate dehydrogenase [Salmonella
           typhimurium] >gi|154069 (M66861) glyceraldehyde-3-phosphate
           dehydrogenase [Salmonella sp.] >gi|154071 (M66862)
           glyceraldehyde-3-phosphate dehydrogenase [Salmonella sp.] >gi|154073
           (M66863) glyceraldehyde-3-phosphate dehydrogenase [Salmonella sp.]
           >gi|154075 (M66864) glyceraldehyde-3-phosphate dehydrogenase
           [Salmonella sp.] >gi|154077 (M66865) glyceraldehyde-3-phosphate
           dehydrogenase [Salmonella sp.] >gi|154079 (M66866)
           glyceraldehyde-3-phosphate dehydrogenase [Salmonella sp.] >gi|154081
           (M66867) glyceraldehyde-3-phosphate dehydrogenase [Salmonella sp.]
           >gi|154083 (M66868) glyceraldehyde-3-phosphate dehydrogenase
           [Salmonella sp.]
           Length = 308
	    Score = 729 (256.6 bits), Expect = 2.2e-71, P = 2.2e-71
  =>sp|P80505|G3P2_SYNY3 GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 2 (GAPDH 2)
            (GAP-2) (NAD(P)-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE)
            Length = 337
	    Score = 729 (256.6 bits), Expect = 2.2e-71, P = 2.2e-71
  =>gi|154053 (M66853) glyceraldehyde-3-phosphate dehydrogenase [Salmonella sp.]
           >gi|154055 (M66854) glyceraldehyde-3-phosphate dehydrogenase
           [Salmonella sp.]
           Length = 308
	    Score = 728 (256.3 bits), Expect = 2.8e-71, P = 2.8e-71
  =>gi|971587 (X83564) glyceraldehyde-3-phosphate dehydrogenase (NADP+)
           (phosphorylating) [Synechocystis sp.]
           Length = 337
	    Score = 728 (256.3 bits), Expect = 2.8e-71, P = 2.8e-71
  =>gi|154065 (M66859) glyceraldehyde-3-phosphate dehydrogenase [Salmonella
           typhimurium]
           Length = 308
	    Score = 727 (255.9 bits), Expect = 3.5e-71, P = 3.5e-71
  =>gi|146099 (M66880) glyceraldehyde-3-phosphate dehydrogenase [Escherichia coli]
           Length = 308
	    Score = 726 (255.6 bits), Expect = 4.5e-71, P = 4.5e-71
  =>gi|146079 (M66870) glyceraldehyde-3-phosphate dehydrogenase [Escherichia coli]
           >gi|146081 (M66871) glyceraldehyde-3-phosphate dehydrogenase
           [Escherichia coli] >gi|146083 (M66872) glyceraldehyde-3-phosphate
           dehydrogenase [Escherichia coli] >gi|146085 (M66873)
           glyceraldehyde-3-phosphate dehydrogenase [Escherichia coli]
           >gi|146087 (M66874) glyceraldehyde-3-phosphate dehydrogenase
           [Escherichia coli] >gi|146089 (M66875) glyceraldehyde-3-phosphate
           dehydrogenase [Escherichia coli] >gi|146091 (M66876)
           glyceraldehyde-3-phosphate dehydrogenase [Escherichia coli]
           >gi|146095 (M66878) glyceraldehyde-3-phosphate dehydrogenase
           [Escherichia coli] >gi|146101 (M66881) glyceraldehyde-3-phosphate
           dehydrogenase [Escherichia coli] >gi|146103 (M66882)
           glyceraldehyde-3-phosphate dehydrogenase [Escherichia coli]
           Length = 308
	    Score = 725 (255.2 bits), Expect = 5.8e-71, P = 5.8e-71
  =>gi|146097 (M66879) glyceraldehyde-3-phosphate dehydrogenase [Escherichia coli]
           Length = 308
	    Score = 725 (255.2 bits), Expect = 5.8e-71, P = 5.8e-71
  =>sp|P54226|G3P_STRAE GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gi|1174249 (U44856) glyceraldehyde-3-phosphate dehydrogenase
            [Streptomyces arenae]
            Length = 333
	    Score = 725 (255.2 bits), Expect = 5.8e-71, P = 5.8e-71
  =>gi|2687943 (AE001119) glyceraldehyde 3-phosphate dehydrogenase (gap) [Borrelia
            burgdorferi]
            Length = 335
	    Score = 725 (255.2 bits), Expect = 5.8e-71, P = 5.8e-71
  =>sp|Q07234|G3P_BUCAP GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||I40069 glyceraldehyde-3-phosphate dehydrogenase - Buchnera
            aphidicola >gi|862630 (U11045) glyceraldehyde-3-phosphate
            dehydrogenase [Buchnera aphidicola] >prf||2107191A glyceraldehyde
            phosphate dehydrogenase [Buchnera aphidicola]
            Length = 332
	    Score = 724 (254.9 bits), Expect = 7.4e-71, P = 7.4e-71
  =>sp|P55071|G3P_AMAMU GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gi|945042 (U30665) glycerolaldehyde-3-phosphate dehydrogenase
            [Amanita muscaria]
            Length = 289
	    Score = 723 (254.5 bits), Expect = 9.4e-71, P = 9.4e-71
  =>sp|P27726|G3P_PSEAE GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gi|430853 (M74256) glyceraldehyde 3-phosphate dehydrogenase
            [Pseudomonas aeruginosa]
            Length = 335
	    Score = 720 (253.5 bits), Expect = 2.0e-70, P = 2.0e-70
  =>sp|Q01651|G3P_CORGL GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||A43260 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - Corynebacterium glutamicum >gi|40498 (X59403) glyceraldehyde
            3-phosphate dehydrogenase [Corynebacterium glutamicum]
            Length = 336
	    Score = 718 (252.7 bits), Expect = 3.2e-70, P = 3.2e-70
  =>gi|146093 (M66877) glyceraldehyde-3-phosphate dehydrogenase [Escherichia coli]
           Length = 308
	    Score = 717 (252.4 bits), Expect = 4.1e-70, P = 4.1e-70
  =>sp|P30724|G3PA_GRAVE GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE PRECURSOR,
            CHLOROPLAST >pir||S45484 glyceraldehyde-3-phosphate dehydrogenase
            (NADP+) (phosphorylating) (EC 1.2.1.13) A, chloroplast - red alga
            (Gracilaria verrucosa) >gi|18789 (Z15102) glyceraldehyde
            3-phosphate dehydrogenase [Gracilaria verrucosa] >gi|404697
            (L22011) glyceraldehyde-3-phosphate dehydrogenase [Gracilaria
            verrucosa]
            Length = 416
	    Score = 715 (251.7 bits), Expect = 6.6e-70, P = 6.6e-70
  =>pir||S25596 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
            (EC 1.2.1.13) precursor, chloroplast - red alga (Gracilaria
            verrucosa)
            Length = 416
	    Score = 715 (251.7 bits), Expect = 6.6e-70, P = 6.6e-70
  =>sp|P46795|G3P_BORBU GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gi|1314257 (U28760) glyceraldehyde-3-phosphate dehydrogenase
            homolog; similar to Thermotoga maritima
            D-glyceraldehyde-3-phosphate dehydrogenase, Swiss-Prot Accession
            Number P17721 [Borrelia burgdorferi]
            Length = 335
	    Score = 715 (251.7 bits), Expect = 6.6e-70, P = 6.6e-70
  =>sp|P24749|G3P_ESCBL GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||I41223 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - Escherichia blattae (ATCC 33429) (fragment) >pir||I41226
            glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) -
            Escherichia blattae (ATCC 33430) (fragment) >pir||I41220
            glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) -
            Escherichia blattae (fragment) >gi|146077 (M63358)
            glyceraldehyde-3-phosphate dehydrogenase [Escherichia blattae]
            >gi|146109 (M63359) glyceraldehyde-3-phosphate dehydrogenase
            [Escherichia blattae] >gi|146115 (M63360)
            glyceraldehyde-3-phosphate dehydrogenase [Escherichia blattae]
            Length = 294
	    Score = 709 (249.6 bits), Expect = 2.9e-69, P = 2.9e-69
  =>sp|P24164|G3P_KLEPN GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            Length = 303
	    Score = 708 (249.2 bits), Expect = 3.7e-69, P = 3.7e-69
  =>sp|P24751|G3P1_ESCVU GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||I41221 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - Escherichia vulneris (fragment) >gi|146105 (M63363)
            glyceraldehyde-3-phosphate dehydrogenase [Escherichia vulneris]
            Length = 294
	    Score = 708 (249.2 bits), Expect = 3.7e-69, P = 3.7e-69
  =>sp|P24750|G3P_ESCHE GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||I41225 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - Escherichia hermannii (ATCC 33652) (fragment) >pir||I41222
            glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) -
            Escherichia hermannii (fragment) >gi|146107 (M63361)
            glyceraldehyde-3-phosphate dehydrogenase [Escherichia hermannii]
            >gi|146113 (M63362) glyceraldehyde-3-phosphate dehydrogenase
            [Escherichia hermannii]
            Length = 294
	    Score = 708 (249.2 bits), Expect = 3.7e-69, P = 3.7e-69
  =>gi|149195 (M63371) glyceraldehyde-3-phosphate dehydrogenase [Klebsiella
           pneumoniae]
           Length = 294
	    Score = 708 (249.2 bits), Expect = 3.7e-69, P = 3.7e-69
  =>pir||S43340 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
            (EC 1.2.1.13) - red alga (Chondrus crispus) >gi|440397 (X73033)
            glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
            [Chondrus crispus]
            Length = 414
	    Score = 707 (248.9 bits), Expect = 4.7e-69, P = 4.7e-69
  =>sp|P34919|G3PA_CHOCR GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE PRECURSOR,
            CHLOROPLAST >pir||S32705 glyceraldehyde-3-phosphate dehydrogenase
            (NADP+) (phosphorylating) (EC 1.2.1.13) A precursor, chloroplast -
            red alga (Chondrus crispus) >gi|297456 (X73035)
            glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
            precursor [Chondrus crispus]
            Length = 414
	    Score = 707 (248.9 bits), Expect = 4.7e-69, P = 4.7e-69
  =>sp|P29272|G3P2_RHOSH GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE B (GAPDH)
            >pir||C41080 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            B - Rhodobacter sphaeroides >gi|151991 (M68914) glyceraldehyde
            3-phosphate dehydrogenase [Rhodobacter sphaeroides]
            Length = 333
	    Score = 706 (248.5 bits), Expect = 5.9e-69, P = 5.9e-69
  =>sp|P24748|G3P_CITFR GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||I40701 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - Citrobacter freundii (fragment) >gi|144438 (M63370)
            glyceraldehyde-3-phosphate dehydrogenase [Citrobacter freundii]
            Length = 294
	    Score = 706 (248.5 bits), Expect = 5.9e-69, P = 5.9e-69
  =>sp|P55070|G3P_LACDT GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gi|929983 (U30876) glycerol-3-aldehyde dehydrogenase [Lactarius
            deterrimus]
            Length = 290
	    Score = 704 (247.8 bits), Expect = 9.7e-69, P = 9.7e-69
  =>sp|P24753|G3P_SEROD GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gi|152825 (M63374) glyceraldehyde-3-phosphate dehydrogenase
            [Serratia odorifera]
            Length = 294
	    Score = 702 (247.1 bits), Expect = 1.6e-68, P = 1.6e-68
  =>gi|2529370 (L76552) NADP-dependent glyceraldehydephosphate dehydrogenase
            [Spinacia oleracea]
            Length = 401
	    Score = 702 (247.1 bits), Expect = 1.6e-68, P = 1.6e-68
  =>pir||PQ0179 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) 3 - maize
            (fragment) >gi|293887 (L13431) glyceraldehyde-3-phosphate
            dehydrogenase [Zea mays]
            Length = 234
	    Score = 701 (246.8 bits), Expect = 2.0e-68, P = 2.0e-68
  =>sp|P19866|G3PA_SPIOL GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A, CHLOROPLAST
            >pir||DESPGA glyceraldehyde-3-phosphate dehydrogenase (NADP+)
            (phosphorylating) (EC 1.2.1.13) A, chloroplast - spinach
            Length = 337
	    Score = 701 (246.8 bits), Expect = 2.0e-68, P = 2.0e-68
  =>gi|1218048 (U48832) glyceraldehyde-3-phosphate dehydrogenase [Sus scrofa]
            Length = 287
	    Score = 701 (246.8 bits), Expect = 2.0e-68, P = 2.0e-68
  =>gi|1561721 (U55243) glyceraldehyde-3-phosphate dehydrogenase [Dictyostelium
            discoideum]
            Length = 299
	    Score = 701 (246.8 bits), Expect = 2.0e-68, P = 2.0e-68
  =>sp|P24166|G3P_SERMA GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gi|152823 (M63373) glyceraldehyde-3-phosphate dehydrogenase
            [Serratia marcescens]
            Length = 294
	    Score = 699 (246.1 bits), Expect = 3.3e-68, P = 3.3e-68
  =>sp|P24746|G3P_ESCFE GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||I41120 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
            - Escherichia fergusonii (ATCC 35472) (fragment) >pir||I41118
            glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) -
            Escherichia fergusonii (fragment) >gi|145212 (M63366)
            glyceraldehyde-3-phosphate dehydrogenase [Escherichia fergusonii]
            >gi|145216 (M63368) glyceraldehyde-3-phosphate dehydrogenase
            [Escherichia fergusonii]
            Length = 294
	    Score = 698 (245.7 bits), Expect = 4.2e-68, P = 4.2e-68
  =>gi|1561725 (U55245) glyceraldehyde-3-phosphate dehydrogenase [Acrasis rosea]
            Length = 299
	    Score = 698 (245.7 bits), Expect = 4.2e-68, P = 4.2e-68
  =>pir||I41119 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) -
            Escherichia fergusonii (ATCC 35471) (fragment) >gi|145214 (M63367)
            glyceraldehyde-3-phosphate dehydrogenase [Escherichia fergusonii]
            Length = 294
	    Score = 696 (245.0 bits), Expect = 6.8e-68, P = 6.8e-68
  =>pir||I41224 glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) -
            Escherichia vulneris (ATCC 33821) (fragment) >pir||I41227
            glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) -
            Escherichia vulneris (ATCC 33822) (fragment) >gi|146111 (M63364)
            glyceraldehyde-3-phosphate dehydrogenase [Escherichia vulneris]
            >gi|146117 (M63365) glyceraldehyde-3-phosphate dehydrogenase
            [Escherichia vulneris]
            Length = 294
	    Score = 696 (245.0 bits), Expect = 6.8e-68, P = 6.8e-68
  =>sp|P24163|G3P_ENTAE GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gi|148353 (M63372) glyceraldehyde-3-phosphate dehydrogenase
            [Enterobacter aerogenes]
            Length = 294
	    Score = 694 (244.3 bits), Expect = 1.1e-67, P = 1.1e-67
  =>gnl|PID|e327827 (AJ000039) glyceraldehyde 3-phosphate dehydrogenase [Bos
            taurus]
            Length = 268
	    Score = 694 (244.3 bits), Expect = 1.1e-67, P = 1.1e-67
  =>gi|435103 (L26923) glyceraldehyde-phosphate dehydrogenase [Pinus sylvestris]
           Length = 411
	    Score = 692 (243.6 bits), Expect = 1.8e-67, P = 1.8e-67
  =>sp|P24165|G3P1_SALTY GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >gi|154051 (M63369) glyceraldehyde-3-phosphate dehydrogenase
            [Salmonella typhimurium]
            Length = 294
	    Score = 690 (242.9 bits), Expect = 2.9e-67, P = 2.9e-67
  =>sp|P75358|G3P_MYCPN GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE (GAPDH)
            >pir||S73737 glyceraldehyde-3-phosphate dehydrogenase - Mycoplasma
            pneumoniae (SGC3) (ATCC 29342) >gi|1674095 (AE000040) Mycoplasma
            pneumoniae, glycerladehyde-3-phosphate dehydrogenase; similar to
            GenBank Accession Number S34254, from C. pasteurianum [Mycoplasma
            pneumoniae]
            Length = 337
	    Score = 688 (242.2 bits), Expect = 4.8e-67, P = 4.8e-67
  =>sp|P09315|G3PA_MAIZE GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A PRECURSOR,
            CHLOROPLAST >pir||DEZMG3 glyceraldehyde-3-phosphate dehydrogenase
            (NADP+) (phosphorylating) (EC 1.2.1.13) A precursor, chloroplast -
            maize >gi|168479 (M18976) glyceraldehyde-3-phosphate dehydrogenase
            [Zea mays] >gi|763035 (X15408) glyceraldehyde-3-phosphate
            dehydrogenase [Zea mays]
            Length = 403
	    Score = 687 (241.8 bits), Expect = 6.1e-67, P = 6.1e-67
  =>gi|22240 (X07157) GADPH (383 AA) [Zea mays]
          Length = 383
	    Score = 687 (241.8 bits), Expect = 6.1e-67, P = 6.1e-67
  =>gi|35053 (X53778) uracil DNA glycosylase [Homo sapiens]
          Length = 331
	    Score = 686 (241.5 bits), Expect = 7.8e-67, P = 7.8e-67

>CcruzaQ_1245 has the following protein neighbors:
Sequence,   
  =>gnl|PID|d1025454 (AB006692) spermidine synthase [Nicotiana sylvestris]
            Length = 314
	    Score = 190 (66.9 bits), Expect = 4.2e-23, Sum P(3) = 4.2e-23
  =>gnl|PID|e267360 (Y08253) spermine synthase 2 [Datura stramonium]
            Length = 317
	    Score = 196 (69.0 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
  =>gnl|PID|d1025453 (AB006691) spermidine synthase 2 [Hyoscyamus niger]
            Length = 308
	    Score = 190 (66.9 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
  =>gnl|PID|d1025452 (AB006690) spermidine synthase 1 [Hyoscyamus niger]
            Length = 315
	    Score = 194 (68.3 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
  =>sp|Q64674|SPEE_MOUSE SPERMIDINE SYNTHASE (PUTRESCINE AMINOPROPYLTRANSFERASE)
            (SPDSY) >gi|309502 (L19311) spermidine synthase [Mus musculus]
            >gi|1061192 (Z67748) spermidine synthase [Mus musculus]
            >prf||2113276A spermidine synthase [Mus musculus]
            Length = 302
	    Score = 178 (62.7 bits), Expect = 6.8e-19, Sum P(3) = 6.8e-19
  =>gnl|PID|e267359 (Y08252) spermine synthase 1 [Datura stramonium]
            Length = 308
	    Score = 195 (68.6 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
  =>gnl|PID|d1006415 (D28506) Putrescine N-Methyltransferase [Nicotiana tabacum]
            Length = 375
	    Score = 172 (60.5 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
  =>sp|Q09741|SPEE_SCHPO SPERMIDINE SYNTHASE (PUTRESCINE AMINOPROPYLTRANSFERASE)
            (SPDSY) >gi|984695 (Z54140) putrescine aminopropyltransferase
            [Schizosaccharomyces pombe]
            Length = 298
	    Score = 170 (59.8 bits), Expect = 3.6e-18, Sum P(3) = 3.6e-18
  =>gnl|PID|d1029973 (AB015599) spermidine synthase [Coffea arabica]
            Length = 316
	    Score = 185 (65.1 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
  =>gnl|PID|d1025455 (AB006693) spermidine synthase [Arabidopsis thaliana]
            Length = 293
	    Score = 185 (65.1 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
  =>gi|3176685 (AC003671) Strong similarity to spermidine synthase 1, gb|Y08252
            and possibly closer similarity to spermidine synthase 2 gb|Y08253
            from Datura stramonium.  ESTs gb|N38155, gb|T41738, gb|AA597626,
            gb|AA712967 and gb|AA712346 come from this ge...
            Length = 340
	    Score = 185 (65.1 bits), Expect = 5.8e-17, Sum P(2) = 5.8e-17
  =>gi|531202 (M34338) spermidine synthase [Homo sapiens]
           Length = 302
	    Score = 187 (65.8 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
  =>sp|P19623|SPEE_HUMAN SPERMIDINE SYNTHASE (PUTRESCINE AMINOPROPYLTRANSFERASE)
            (SPDSY) >pir||A32610 spermidine synthase (EC 2.5.1.16) - human
            >gi|338394 (M64231) spermidine synthase [Homo sapiens]
            Length = 302
	    Score = 187 (65.8 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
  =>sp|Q12074|SPEE_YEAST SPERMIDINE SYNTHASE (PUTRESCINE AMINOPROPYLTRANSFERASE)
            (SPDSY) >pir||S54090 SPE3 protein - yeast (Saccharomyces
            cerevisiae) >gi|805049 (Z49219) unknown [Saccharomyces cerevisiae]
            >gi|1230677 (U51033) Also found in EMBL accession number Z49219
            [Saccharomyces cerevisiae] >gnl|PID|e236918 (Z71255) unknown
            [Saccharomyces cerevisiae] >gi|1326074 (U27519) spermidine synthase
            [Saccharomyces cerevisiae]
            Length = 293
	    Score = 158 (55.6 bits), Expect = 2.1e-14, Sum P(3) = 2.1e-14
  =>bbs|170144 spermidine synthase, putrescine aminopropyltransferase, PAPT {EC
            2.5.1.6} [rats, Peptide, 297 aa]
            Length = 297
	    Score = 154 (54.2 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
  =>sp|Q57761|SPEE_METJA PUTATIVE SPERMIDINE SYNTHASE (PUTRESCINE
            AMINOPROPYLTRANSFERASE) (SPDSY) >pir||B64339 spermidine synthase
            (EC 2.5.1.16) - Methanococcus jannaschii >gi|1591033 (U67486)
            spermidine synthase (speE) [Methanococcus jannaschii]
            Length = 293
	    Score = 135 (47.5 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
  =>gnl|PID|e267589 (Z80360) Unknown, highly similar to several spermidine
            synthases [Bacillus subtilis] >gnl|PID|e1186250 (Z99123) similar to
            spermidine synthase [Bacillus subtilis]
            Length = 276
	    Score = 106 (37.3 bits), Expect = 9.4e-10, Sum P(3) = 9.4e-10
  =>pir||S64995 hypothetical protein YLR146c - yeast (Saccharomyces cerevisiae)
            >gi|1262306 (U53879) Ylr146cp: spermidine synthase [Saccharomyces
            cerevisiae] >gnl|PID|e245815 (Z73318) ORF YLR146c [Saccharomyces
            cerevisiae] >gi|3201943 (AF067970) spermine synthase [Saccharomyces
            cerevisiae]
            Length = 300
	    Score = 127 (44.7 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
  =>sp|P09158|SPEE_ECOLI SPERMIDINE SYNTHASE (PUTRESCINE AMINOPROPYLTRANSFERASE)
            (SPDSY) >pir||SYECSD spermidine synthase (EC 2.5.1.16) -
            Escherichia coli >gi|147852 (J02804) spermidine synthase
            [Escherichia coli] >gnl|PID|d1006121 (D26562) 'spermidine synthase'
            [Escherichia coli] >gi|1786312 (AE000121) spermidine synthase
            [Escherichia coli]
            Length = 288
	    Score = 76 (26.8 bits), Expect = 0.0033, Sum P(3) = 0.0033
  =>gi|2982813 (AE000672) spermidine synthase [Aquifex aeolicus]
            Length = 280
	    Score = 81 (28.5 bits), Expect = 0.0048, Sum P(2) = 0.0048

>CcruzaQ_859 has the following protein neighbors:
Sequence,   
  =>gi|717163 (U22048) Trypanosoma brucei putative RNA binding protein tbRRM1
           gene, complete cds. [Trypanosoma brucei brucei]
           Length = 435
	    Score = 204 (71.8 bits), Expect = 6.5e-13, P = 6.5e-13
  =>gnl|PID|e349078 (Z36948) D2089.1 [Caenorhabditis elegans]
            Length = 353
	    Score = 177 (62.3 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
  =>gnl|PID|e1297882 (Z81532) F36F2.3 [Caenorhabditis elegans]
            Length = 1877
	    Score = 126 (44.4 bits), Expect = 6.5e-11, Sum P(3) = 6.5e-11
  =>gi|786117 (L41834) nuclear protein [Ensis minor]
           Length = 505
	    Score = 129 (45.4 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
  =>gi|2702458 (AF038619) No definition line found [Caenorhabditis elegans]
            Length = 444
	    Score = 160 (56.3 bits), Expect = 6.0e-08, P = 6.0e-08
  =>pir||A40988 54K arginine-rich nuclear protein - human >gi|178997 (M74002)
            arginine-rich nuclear protein [Homo sapiens]
            Length = 484
	    Score = 145 (51.0 bits), Expect = 3.2e-06, P = 3.2e-06
  =>gi|1465838 (U64857) No definition line found [Caenorhabditis elegans]
            Length = 470
	    Score = 157 (55.3 bits), Expect = 1.4e-07, P = 1.4e-07
  =>pir||S56117 spermatid-specific protein T2 precursor - longfin squid
            Length = 118
	    Score = 129 (45.4 bits), Expect = 6.2e-07, P = 6.2e-07
  =>sp|P13816|GARP_PLAFF GLUTAMIC ACID-RICH PROTEIN PRECURSOR >pir||A54514
            glutamic acid-rich protein precursor - Plasmodium falciparum
            >gi|160299 (J03998) glutamic acid-rich protein [Plasmodium
            falciparum]
            Length = 678
	    Score = 158 (55.6 bits), Expect = 2.0e-07, P = 2.0e-07
  =>sp|P09406|RU17_XENLA U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD (U1 SNRNP 70 KD)
            >pir||S02016 U1 snRNP 70K protein - African clawed frog >gi|65179
            (X12430) U1 70K [Xenopus laevis]
            Length = 471
	    Score = 133 (46.8 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
  =>gnl|PID|e229183 (Z70204) C11G6.3 [Caenorhabditis elegans]
            Length = 385
	    Score = 110 (38.7 bits), Expect = 7.9e-05, Sum P(3) = 7.9e-05
  =>sp|Q24669|TRSF_DROSI FEMALE-SPECIFIC TRANSFORMER PROTEIN >pir||S26046
            sex-determining protein transformer - fruit fly (Drosophila
            simulans) >gi|9144 (X66930) transformer (tra) gene product
            [Drosophila simulans]
            Length = 184
	    Score = 132 (46.5 bits), Expect = 1.5e-06, P = 1.5e-06
  =>gi|337445 (M57939) ribonucleoprotein antigen [Homo sapiens]
           Length = 428
	    Score = 146 (51.4 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
  =>gi|602023 (X06814) hU1-70K protein (234 AA) [Homo sapiens]
           Length = 233
	    Score = 134 (47.2 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
  =>gi|1086592 (U41007) similar to pre-mRNA splicing factor SRP20 [Caenorhabditis
            elegans]
            Length = 179
	    Score = 129 (45.4 bits), Expect = 2.5e-06, P = 2.5e-06
  =>pir||A57514 RNA helicase HEL117 - rat >gi|897915 (U25746) RNA helicase [Rattus
            norvegicus]
            Length = 1032
	    Score = 129 (45.4 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
  =>sp|P15605|YM04_PARTE HYPOTHETICAL 18.8 KD PROTEIN (ORF4) >pir||S07729
            hypothetical protein 4 - Paramecium tetraurelia mitochondrion
            (SGC6) >gi|13261 (X15917) ORF4 protein (AA 1-156) [Paramecium
            aurelia]
            Length = 156
	    Score = 104 (36.6 bits), Expect = 0.0047, P = 0.0047
  =>gi|733604 (U23484) similar to splicing factor S35 (SP:SC35_HUMAN, Q01130) and
           other proteins necessary for splicing of pre-mRNA [Caenorhabditis
           elegans]
           Length = 196
	    Score = 126 (44.4 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
  =>sp|Q08170|SR75_HUMAN PRE-MRNA SPLICING FACTOR SRP75 >pir||A48133 pre-mRNA
            splicing SRp75 - human >gi|307438 (L14076) pre-mRNA splicing factor
            [Homo sapiens]
            Length = 494
	    Score = 111 (39.1 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
  =>gnl|PID|e250378 (Z75546) R05D11.7 [Caenorhabditis elegans]
            Length = 155
	    Score = 120 (42.2 bits), Expect = 5.8e-06, P = 5.8e-06
  =>gi|3037018 (AF041330) NADH dehydrogenase subunit 5 [Bodo saltans]
            Length = 212
	    Score = 100 (35.2 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
  =>gi|825727 (X07401) hU1-70K protein (286 AA) [Homo sapiens]
           Length = 285
	    Score = 134 (47.2 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
  =>gnl|PID|e276445 (Z81264) nuclear protein [Sus scrofa]
            Length = 124
	    Score = 118 (41.5 bits), Expect = 9.6e-06, P = 9.6e-06
  =>gnl|PID|e237170 (Z71262) F22D6.5 [Caenorhabditis elegans]
            Length = 775
	    Score = 128 (45.1 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
  =>gi|436923 (U01849) ORF1 [Trypanosoma brucei]
           Length = 146
	    Score = 100 (35.2 bits), Expect = 0.0084, P = 0.0084
  =>gi|602021 (X06812) hU1-70K protein (302 AA) [Homo sapiens]
           Length = 301
	    Score = 134 (47.2 bits), Expect = 2.1e-05, P = 2.1e-05
  =>gnl|PID|e250202 (Z75539) F28C1.1 [Caenorhabditis elegans]
            Length = 695
	    Score = 131 (46.1 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
  =>sp|Q04621|PHI1_MYTED SPERM-SPECIFIC PROTEIN PHI-1 >pir||S34115 sperm-specific
            protein Phi-1 - blue mussel (fragment) >gi|9700 (X69718)
            sperm-specific protien Phi-1 [Mytilus edulis]
            Length = 92
	    Score = 89 (31.3 bits), Expect = 0.013, P = 0.013
  =>sp|P30651|YOW5_CAEEL HYPOTHETICAL 57.1 KD PROTEIN ZK643.5 IN CHROMOSOME III
            >pir||S23243 hypothetical protein ZK643.5 - Caenorhabditis elegans
            >gi|6972 (Z11126) ZK643.5 [Caenorhabditis elegans]
            Length = 503
	    Score = 136 (47.9 bits), Expect = 3.4e-05, P = 3.4e-05
  =>gnl|PID|e1298622 (AL023860) hypothetical protein [Schizosaccharomyces pombe]
            Length = 244
	    Score = 129 (45.4 bits), Expect = 4.2e-05, P = 4.2e-05
  =>gi|2078483 (U43200) antifreeze glycopeptide AFGP polyprotein precursor
            [Boreogadus saida]
            Length = 507
	    Score = 135 (47.5 bits), Expect = 4.4e-05, P = 4.4e-05
  =>sp|P37709|TRHY_RABIT TRICHOHYALIN >pir||S28589 trichohyalin - rabbit >gi|1747
            (Z19092) trichohyalin [Oryctolagus cuniculus]
            Length = 1407
	    Score = 107 (37.7 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
  =>gi|431953 (X76302) nucleic acid binding protein [Homo sapiens]
           Length = 163
	    Score = 117 (41.2 bits), Expect = 4.9e-05, P = 4.9e-05
  =>gi|337444 (M57939) ribonucleoprotein antigen [Homo sapiens] >gi|337447
           (M22636) small ribonucleoprotein 70 kd protein [Homo sapiens]
           >gi|683580 (X84841) 68 kDa (U1) ribonucleoprotein [Homo sapiens]
           Length = 437
	    Score = 134 (47.2 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
  =>gi|1703572 (U80437) coded for by C. elegans cDNA CEESI44F; coded for by C.
            elegans cDNA yk27f9.3; coded for by C. elegans cDNA yk19d3.3; coded
            for by C. elegans cDNA CEESB10R; coded for by C. elegans cDNA
            yk19d3.5; coded for by C. elegans cDNA yk152a5....
            Length = 1590
	    Score = 111 (39.1 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
  =>gi|3135267 (AC003058) hypothetical protein [Arabidopsis thaliana]
            Length = 102
	    Score = 110 (38.7 bits), Expect = 7.0e-05, P = 7.0e-05
  =>gi|1255425 (U53154) No definition line found [Caenorhabditis elegans]
            Length = 390
	    Score = 100 (35.2 bits), Expect = 0.00048, Sum P(2) = 0.00048
  =>sp|P42151|HSP1_SARHA SPERM PROTAMINE P1 >gi|598379 (L35324) protamine P1
            [Sarcophilus harrisii] >gi|2352881 (AF010276) protamine P1
            [Dasyurus maculatus]
            Length = 62
	    Score = 109 (38.4 bits), Expect = 9.0e-05, P = 9.0e-05
  =>sp|P42135|HSP1_DASVI SPERM PROTAMINE P1 >gi|598103 (L35340) protamine P1
            [Dasyurus viverrinus] >gi|598105 (L35341) protamine P1 [Dasyurus
            hallucatus] >prf||2117429T protamine P1 [Dasyurus hallucatus]
            Length = 61
	    Score = 109 (38.4 bits), Expect = 9.0e-05, P = 9.0e-05
  =>bbs|169646 protamine [Monodonta turbinata, gonads, Peptide, 106 aa]
            Length = 106
	    Score = 94 (33.1 bits), Expect = 0.0037, P = 0.0037
  =>sp|Q07283|TRHY_HUMAN TRICHOHYALIN >pir||A45973 trichohyalin - human >gi|292836
            (L09190) trichohyalin [Homo sapiens]
            Length = 1898
	    Score = 112 (39.4 bits), Expect = 0.00010, Sum P(2) = 0.00010
  =>sp|P21573|YB1_XENLA Y BOX BINDING PROTEIN-1 (Y-BOX TRANSCRIPTION FACTOR)
            >pir||A38274 Y-box protein 1 - African clawed frog >gi|214155
            (M59453) DNA-binding protein [Xenopus laevis]
            Length = 303
	    Score = 128 (45.1 bits), Expect = 0.00010, P = 0.00010

>CcruzaQ_1133 has the following protein neighbors:
Sequence,   
  =>gnl|PID|d1030495 (AP000002) 515aa long hypothetical thermostable
            carboxypeptidase [Pyrococcus horikoshii]
            Length = 515
	    Score = 390 (137.3 bits), Expect = 1.8e-35, P = 1.8e-35
  =>gi|1256616 (L77246) putative [Bacillus subtilis]
            Length = 364
	    Score = 379 (133.4 bits), Expect = 2.7e-34, P = 2.7e-34
  =>sp|P50848|YPWA_BACSU HYPOTHETICAL 58.2 KD PROTEIN IN KDGT-XPT INTERGENIC
            REGION >gnl|PID|e1183654 (Z99115) similar to carboxypeptidase
            [Bacillus subtilis]
            Length = 501
	    Score = 379 (133.4 bits), Expect = 2.7e-34, P = 2.7e-34
  =>sp|P42663|CTAQ_THEAQ THERMOSTABLE CARBOXYPEPTIDASE 1 (CARBOXYPEPTIDASE TAQ)
            >pir||JC2294 carboxypeptidase (EC 3.4.-.-) Taq - Thermus aquaticus
            (YT-1) >gnl|PID|d1005079 (D17669) carboxypeptidase Taq [Thermus
            aquaticus] >prf||2018171A carboxypeptidase Taq [Thermus aquaticus]
            Length = 511
	    Score = 359 (126.4 bits), Expect = 3.5e-32, P = 3.5e-32

>CcruzaQ_1123 has the following protein neighbors:
Sequence,   
  =>gi|2623597 (AF027872) mucin-like protein [Trypanosoma cruzi]
            Length = 122
	    Score = 159 (56.0 bits), Expect = 2.8e-10, P = 2.8e-10
  =>gi|3064167 (AF036419) mucin-like protein [Trypanosoma cruzi]
            Length = 94
	    Score = 154 (54.2 bits), Expect = 1.0e-09, P = 1.0e-09
  =>gi|3064214 (AF036450) mucin-like protein [Trypanosoma cruzi]
            Length = 115
	    Score = 149 (52.5 bits), Expect = 3.5e-09, P = 3.5e-09
  =>gi|914966 (L20809) mucin-like protein [Trypanosoma cruzi] >gi|1732055 (U61533)
           MUC.T0-1 [Trypanosoma cruzi] >prf||2124391E mucin-like protein
           [Trypanosoma cruzi]
           Length = 142
	    Score = 145 (51.0 bits), Expect = 9.6e-09, P = 9.6e-09
  =>gi|2623601 (AF027874) mucin-like protein [Trypanosoma cruzi]
            Length = 143
	    Score = 144 (50.7 bits), Expect = 1.2e-08, P = 1.2e-08
  =>gi|3064226 (AF036456) mucin-like protein [Trypanosoma cruzi]
            Length = 113
	    Score = 143 (50.3 bits), Expect = 1.6e-08, P = 1.6e-08
  =>gi|3064202 (AF036441) mucin-like protein [Trypanosoma cruzi]
            Length = 147
	    Score = 141 (49.6 bits), Expect = 2.6e-08, P = 2.6e-08
  =>gi|3064160 (AF036415) mucin-like protein [Trypanosoma cruzi]
            Length = 123
	    Score = 140 (49.3 bits), Expect = 3.4e-08, P = 3.4e-08
  =>gi|1732053 (U61532) MUC.TM-1 [Trypanosoma cruzi]
            Length = 123
	    Score = 138 (48.6 bits), Expect = 5.5e-08, P = 5.5e-08
  =>gi|3064146 (AF036408) mucin-like protein [Trypanosoma cruzi]
            Length = 175
	    Score = 135 (47.5 bits), Expect = 1.2e-07, P = 1.2e-07
  =>gi|3064176 (AF036424) mucin-like protein [Trypanosoma cruzi]
            Length = 119
	    Score = 135 (47.5 bits), Expect = 1.2e-07, P = 1.2e-07
  =>gi|2623595 (AF027871) mucin-like protein [Trypanosoma cruzi]
            Length = 123
	    Score = 134 (47.2 bits), Expect = 1.5e-07, P = 1.5e-07
  =>gi|3064156 (AF036413) mucin-like protein [Trypanosoma cruzi]
            Length = 125
	    Score = 134 (47.2 bits), Expect = 1.5e-07, P = 1.5e-07
  =>gi|3064163 (AF036417) mucin-like protein [Trypanosoma cruzi]
            Length = 84
	    Score = 132 (46.5 bits), Expect = 2.5e-07, P = 2.5e-07
  =>gi|3064150 (AF036410) mucin-like protein [Trypanosoma cruzi]
            Length = 133
	    Score = 131 (46.1 bits), Expect = 3.2e-07, P = 3.2e-07
  =>gi|3064173 (AF036422) mucin-like protein [Trypanosoma cruzi]
            Length = 102
	    Score = 129 (45.4 bits), Expect = 5.3e-07, P = 5.3e-07
  =>gi|3064148 (AF036409) mucin-like protein [Trypanosoma cruzi]
            Length = 126
	    Score = 129 (45.4 bits), Expect = 5.3e-07, P = 5.3e-07
  =>gi|1732051 (U59482) mucin-like apoprotein [Trypanosoma cruzi]
            Length = 139
	    Score = 129 (45.4 bits), Expect = 5.3e-07, P = 5.3e-07
  =>gi|3064158 (AF036414) mucin-like protein [Trypanosoma cruzi]
            Length = 95
	    Score = 127 (44.7 bits), Expect = 8.7e-07, P = 8.7e-07
  =>gi|3064241 (AF036465) mucin-like protein [Trypanosoma cruzi]
            Length = 98
	    Score = 126 (44.4 bits), Expect = 1.1e-06, P = 1.1e-06
  =>gi|1019433 (U32346) mucin-like protein; Method: conceptual translation
            supplied by author. [Trypanosoma cruzi] >prf||2124391B mucin-like
            protein [Trypanosoma cruzi]
            Length = 165
	    Score = 125 (44.0 bits), Expect = 1.4e-06, P = 1.4e-06
  =>gi|3064178 (AF036425) mucin-like protein [Trypanosoma cruzi]
            Length = 127
	    Score = 124 (43.7 bits), Expect = 1.8e-06, P = 1.8e-06
  =>gi|1732057 (U62530) MUC.CL-1 [Trypanosoma cruzi]
            Length = 128
	    Score = 124 (43.7 bits), Expect = 1.8e-06, P = 1.8e-06
  =>gi|3064194 (AF036436) mucin-like protein [Trypanosoma cruzi]
            Length = 86
	    Score = 123 (43.3 bits), Expect = 2.4e-06, P = 2.4e-06
  =>gi|3064237 (AF036463) mucin-like protein [Trypanosoma cruzi]
            Length = 114
	    Score = 122 (42.9 bits), Expect = 3.0e-06, P = 3.0e-06
  =>gi|3064235 (AF036462) mucin-like protein [Trypanosoma cruzi]
            Length = 209
	    Score = 115 (40.5 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
  =>gi|3064144 (AF036407) mucin-like protein [Trypanosoma cruzi]
            Length = 148
	    Score = 120 (42.2 bits), Expect = 5.0e-06, P = 5.0e-06
  =>gi|3064231 (AF036460) mucin-like protein [Trypanosoma cruzi]
            Length = 119
	    Score = 117 (41.2 bits), Expect = 1.1e-05, P = 1.1e-05
  =>gi|3068547 (AF036427) mucin-like protein [Trypanosoma cruzi]
            Length = 139
	    Score = 117 (41.2 bits), Expect = 1.1e-05, P = 1.1e-05
  =>gi|3064152 (AF036411) mucin-like protein [Trypanosoma cruzi]
            Length = 74
	    Score = 115 (40.5 bits), Expect = 1.8e-05, P = 1.8e-05
  =>gi|2623608 (AF027878) mucin-like protein [Trypanosoma cruzi] >gi|2623610
            (AF027879) mucin-like protein [Trypanosoma cruzi]
            Length = 163
	    Score = 102 (35.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
  =>gi|2623599 (AF027873) mucin-like protein [Trypanosoma cruzi]
            Length = 136
	    Score = 113 (39.8 bits), Expect = 2.9e-05, P = 2.9e-05
  =>gi|3064222 (AF036454) mucin-like protein [Trypanosoma cruzi]
            Length = 107
	    Score = 112 (39.4 bits), Expect = 3.7e-05, P = 3.7e-05
  =>gi|1019435 (U32447) mucin-like protein [Trypanosoma cruzi]
            Length = 197
	    Score = 125 (44.0 bits), Expect = 3.9e-05, P = 3.9e-05
  =>gi|1019443 (U32572) mucin [Trypanosoma cruzi] >prf||2124391A mucin-like
            protein [Trypanosoma cruzi]
            Length = 78
	    Score = 111 (39.1 bits), Expect = 4.8e-05, P = 4.8e-05
  =>gi|3064199 (AF036439) mucin-like protein [Trypanosoma cruzi]
            Length = 64
	    Score = 103 (36.3 bits), Expect = 0.00035, P = 0.00035
  =>gi|3064216 (AF036451) mucin-like protein [Trypanosoma cruzi]
            Length = 88
	    Score = 99 (34.8 bits), Expect = 0.00095, P = 0.00095
  =>gi|1236661 (U50160) mucin-like glycoprotein [Trypanosoma cruzi]
            Length = 199
	    Score = 114 (40.1 bits), Expect = 0.00099, P = 0.00099
  =>gi|3064182 (AF036428) mucin-like protein [Trypanosoma cruzi]
            Length = 92
	    Score = 96 (33.8 bits), Expect = 0.0020, P = 0.0020
  =>gi|3064154 (AF036412) mucin-like protein [Trypanosoma cruzi]
            Length = 189
	    Score = 109 (38.4 bits), Expect = 0.0032, P = 0.0032
  =>gi|3064218 (AF036452) mucin-like protein [Trypanosoma cruzi]
            Length = 63
	    Score = 94 (33.1 bits), Expect = 0.0033, P = 0.0033
  =>gi|3064239 (AF036464) mucin-like protein [Trypanosoma cruzi]
            Length = 186
	    Score = 107 (37.7 bits), Expect = 0.0052, P = 0.0051
  =>gi|2623591 (AF027869) mucin-like protein [Trypanosoma cruzi]
            Length = 277
	    Score = 110 (38.7 bits), Expect = 0.0077, P = 0.0077
  =>gi|1236663 (U50161) mucin-like glycoprotein [Trypanosoma cruzi]
            Length = 199
	    Score = 106 (37.3 bits), Expect = 0.0091, P = 0.0091
  =>gi|2623603 (AF027875) mucin-like protein [Trypanosoma cruzi]
            Length = 205
	    Score = 106 (37.3 bits), Expect = 0.010, P = 0.010
  =>gi|2623593 (AF027870) mucin-like protein [Trypanosoma cruzi]
            Length = 205
	    Score = 100 (35.2 bits), Expect = 0.051, P = 0.050
  =>gi|3064191 (AF036434) mucin-like protein [Trypanosoma cruzi]
            Length = 63
	    Score = 82 (28.9 bits), Expect = 0.066, P = 0.063
  =>pir||B56888 alkaline phosphatase (EC 3.1.3.1), intestinal type II - rat
            (fragment)
            Length = 67
	    Score = 81 (28.5 bits), Expect = 0.084, P = 0.081
  =>gi|450961 (U05053) envelope glycoprotein [Simian immunodeficiency virus]
           Length = 54
	    Score = 80 (28.2 bits), Expect = 0.11, P = 0.10
  =>gnl|PID|e311296 (Y11112) ciliary neurotrophic factor receptor [Bos taurus]
            Length = 56
	    Score = 80 (28.2 bits), Expect = 0.11, P = 0.10
  =>gi|3064142 (AF036406) mucin-like protein [Trypanosoma cruzi]
            Length = 99
	    Score = 80 (28.2 bits), Expect = 0.11, P = 0.10

>CcruzaQ_235 has the following protein neighbors:
Sequence,   
  =>gi|554015 (M37679) Ig heavy chain precursor [Mus musculus]
           Length = 50
	    Score = 80 (28.2 bits), Expect = 0.10, P = 0.095

>CcruzaQ_1427 has the following protein neighbors:
Sequence,   
  =>gi|1458327 (U64847) F08F3.4 gene product [Caenorhabditis elegans]
            Length = 526
	    Score = 260 (91.5 bits), Expect = 2.7e-42, Sum P(3) = 2.7e-42
  =>pir||I39563 ORF5 - Alcaligenes eutrophus >gi|695275 (L36817) ORF5 [Alcaligenes
            eutrophus] >prf||2104199C ORF 5 [Ralstonia eutropha]
            Length = 324
	    Score = 149 (52.5 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
  =>gi|2293288 (AF008220) YtcB [Bacillus subtilis] >gnl|PID|e1185960 (Z99119)
            similar to NDP-sugar epimerase [Bacillus subtilis]
            Length = 316
	    Score = 136 (47.9 bits), Expect = 1.1e-05, P = 1.1e-05
  =>sp|P44094|YA14_HAEIN HYPOTHETICAL PROTEIN HI1014 >pir||D64018 hypothetical
            protein HI1014 - Haemophilus influenzae (strain Rd KW20)
            >gi|1574046 (U32782) conserved hypothetical protein [Haemophilus
            influenzae Rd]
            Length = 315
	    Score = 126 (44.4 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
  =>gi|2648515 (AE000963) UDP-glucose 4-epimerase (galE-2) [Archaeoglobus
            fulgidus]
            Length = 307
	    Score = 128 (45.1 bits), Expect = 8.5e-05, P = 8.5e-05
  =>gi|2983012 (AE000684) ADP-L-glycero-D-manno-heptose-6-epimerase [Aquifex
            aeolicus]
            Length = 310
	    Score = 106 (37.3 bits), Expect = 0.0019, Sum P(2) = 0.0019
  =>gi|2983546 (AE000721) UDP-glucose-4-epimerase [Aquifex aeolicus]
            Length = 327
	    Score = 107 (37.7 bits), Expect = 0.022, P = 0.022
  =>gnl|PID|e309048 (Z93338) hypothetical protein [Nocardioides simplex]
            Length = 545
	    Score = 104 (36.6 bits), Expect = 0.10, P = 0.099

>CcruzaQ_536 has the following protein neighbors:
Sequence,   
  =>gnl|PID|d1000903 (D00570) open reading frame (196 AA) [Mus musculus]
            Length = 196
	    Score = 83 (29.2 bits), Expect = 0.0080, Sum P(3) = 0.0079
  =>pir||S14972 extensin class I (clone w6) - tomato >gnl|PID|e150337 (X55683)
            extensin (class I) [Solanum lycopersicum]
            Length = 90
	    Score = 68 (23.9 bits), Expect = 0.0086, Sum P(2) = 0.0085
  =>gi|436923 (U01849) ORF1 [Trypanosoma brucei]
           Length = 146
	    Score = 99 (34.8 bits), Expect = 0.0097, P = 0.0096
  =>gi|3037018 (AF041330) NADH dehydrogenase subunit 5 [Bodo saltans]
            Length = 212
	    Score = 89 (31.3 bits), Expect = 0.018, Sum P(2) = 0.018
  =>gnl|PID|e316593 (Y13141) extensin [Bromheadia finlaysoniana]
            Length = 71
	    Score = 54 (19.0 bits), Expect = 0.031, Sum P(2) = 0.031
  =>gnl|PID|d1000902 (D00570) open reading frame (251 AA) [Mus musculus]
            Length = 250
	    Score = 86 (30.3 bits), Expect = 0.047, Sum P(2) = 0.046
  =>pir||A35349 H+-transporting ATP synthase (EC 3.6.1.34) protein 6 - Trypanosoma
            brucei mitochondrion (SGC6)
            Length = 214
	    Score = 90 (31.7 bits), Expect = 0.072, Sum P(2) = 0.070
  =>pir||S14971 extensin class I (clone wY) - tomato >gnl|PID|e153040 (X55682)
            extensin (class I) [Solanum lycopersicum]
            Length = 67
	    Score = 54 (19.0 bits), Expect = 0.10, Sum P(2) = 0.095

>CcruzaQ_1142 has the following protein neighbors:
Sequence,   
  =>pir||S58321 probable membrane protein YOR309c - yeast (Saccharomyces
            cerevisiae) >gi|940840 (X90565) orf 06105 [Saccharomyces
            cerevisiae] >gnl|PID|e252431 (Z75217) ORF YOR309c [Saccharomyces
            cerevisiae]
            Length = 126
	    Score = 93 (32.7 bits), Expect = 0.0039, P = 0.0038

>CcruzaQ_745 has the following protein neighbors:
Sequence,   
  =>sp|P34479|YMJ2_CAEEL HYPOTHETICAL 43.2 KD PROTEIN F59B2.2 IN CHROMOSOME III
            >pir||S31123 hypothetical protein F59B2.2 - Caenorhabditis elegans
            >gi|6720 (Z11505) F59B2.2 [Caenorhabditis elegans]
            Length = 389
	    Score = 124 (43.7 bits), Expect = 0.00036, P = 0.00036
  =>gi|1840045 (U49082) transporter protein [Homo sapiens]
            Length = 504
	    Score = 125 (44.0 bits), Expect = 0.00042, P = 0.00042
  =>gi|861305 (U28928) similar to C. elegans protein F59B2.2 [Caenorhabditis
           elegans]
           Length = 434
	    Score = 120 (42.2 bits), Expect = 0.0012, P = 0.0012
  =>gnl|PID|e16326 (X15081) MURF2 protein (AA 1-348) [Crithidia fasciculata]
            Length = 347
	    Score = 117 (41.2 bits), Expect = 0.0018, P = 0.0018
  =>gnl|PID|e1298090 (Z97191) H32K16.1 [Caenorhabditis elegans]
            Length = 481
	    Score = 109 (38.4 bits), Expect = 0.023, P = 0.023
  =>pir||S36956 cytochrome-c oxidase (EC 1.9.3.1) chain III - Herpetomonas
            mariadeanei mitochondrion (SGC6)
            Length = 288
	    Score = 104 (36.6 bits), Expect = 0.036, P = 0.035
  =>pir||S58781 probable membrane protein YDL196w - yeast (Saccharomyces
            cerevisiae) >gi|1004299 (X83276) putative ORF [Saccharomyces
            cerevisiae] >gnl|PID|e253104 (Z74244) ORF YDL196w [Saccharomyces
            cerevisiae]
            Length = 109
	    Score = 83 (29.2 bits), Expect = 0.046, P = 0.045
  =>gi|340613 (L07545) A 'c' was inserted after nt 369 (=nt 10459 in genomic
           sequence (M10126)) to correct -1 frameshift probably due to gel
           compression [Leishmania tarentolae]
           Length = 355
	    Score = 103 (36.3 bits), Expect = 0.068, P = 0.065

>CcruzaQ_1407 has the following protein neighbors:
Sequence,   
  =>gi|436923 (U01849) ORF1 [Trypanosoma brucei]
           Length = 146
	    Score = 125 (44.0 bits), Expect = 1.2e-06, P = 1.2e-06
  =>pir||S51910 cryptogene protein G4 - Sauroleishmania tarentolae (strain LEM125)
            Length = 169
	    Score = 112 (39.4 bits), Expect = 0.00055, P = 0.00055
  =>gi|501027 (U01849) ORF2 [Trypanosoma brucei]
           Length = 141
	    Score = 94 (33.1 bits), Expect = 0.00095, Sum P(2) = 0.00095
  =>pir||A35349 H+-transporting ATP synthase (EC 3.6.1.34) protein 6 - Trypanosoma
            brucei mitochondrion (SGC6)
            Length = 214
	    Score = 109 (38.4 bits), Expect = 0.0045, P = 0.0045
  =>gi|1216394 (U40265) ATPase subunit 6 [Trypanosoma cruzi]
            Length = 174
	    Score = 105 (37.0 bits), Expect = 0.0058, P = 0.0058
  =>pir||S51364 sperm tail-specific protein mst101(2) - fruit fly (Drosophila
            hydei)
            Length = 1390
	    Score = 117 (41.2 bits), Expect = 0.011, P = 0.011
  =>gi|3037018 (AF041330) NADH dehydrogenase subunit 5 [Bodo saltans]
            Length = 212
	    Score = 103 (36.3 bits), Expect = 0.022, P = 0.022

>CcruzaQ_1423 has the following protein neighbors:
Sequence,   
  =>sp|P26796|RLA0_TRYCR 60S ACIDIC RIBOSOMAL PROTEIN P0 >gi|295372 (L15558)
            ribosomal protein P0 [Trypanosoma cruzi]
            Length = 323
	    Score = 1584 (557.6 bits), Expect = 5.4e-162, P = 5.4e-162
  =>pir||R5UTP0 acidic ribosomal protein P0 - Trypanosoma cruzi >gi|10642 (X65066)
            ribosomal PO protein [Trypanosoma cruzi]
            Length = 321
	    Score = 1552 (546.3 bits), Expect = 1.3e-158, P = 1.3e-158
  =>pir||JH0752 ribosomal protein P0 - Trypanosoma cruzi
            Length = 322
	    Score = 1539 (541.8 bits), Expect = 3.2e-157, P = 3.2e-157
  =>sp|P39096|RLA0_LEICH 60S ACIDIC RIBOSOMAL PROTEIN P0 >gi|459866 (L29300)
            ribosomal protein P0 [Leishmania chagasi]
            Length = 322
	    Score = 1047 (368.6 bits), Expect = 4.4e-105, P = 4.4e-105
  =>sp|P39097|RLA0_LEIIN 60S ACIDIC RIBOSOMAL PROTEIN P0 >gi|430759 (X72714)
            ribosomal PO protein [Leishmania infantum] >gi|430760 (X72714)
            ribosomal PO protein [Leishmania infantum]
            Length = 323
	    Score = 1029 (362.2 bits), Expect = 3.5e-103, P = 3.5e-103
  =>sp|P50346|RLA0_SOYBN 60S ACIDIC RIBOSOMAL PROTEIN P0 >gi|1196897 (L46848)
            acidic ribosomal protein P0 [Glycine max]
            Length = 320
	    Score = 560 (197.1 bits), Expect = 1.8e-53, P = 1.8e-53
  =>gnl|PID|e266420 (Y07959) 60S acidic ribosomal protein P0 [Zea mays]
            Length = 319
	    Score = 555 (195.4 bits), Expect = 6.0e-53, P = 6.0e-53
  =>gi|2088654 (AF002109) 60S acidic ribosomal protein P0 isolog [Arabidopsis
            thaliana]
            Length = 317
	    Score = 545 (191.8 bits), Expect = 6.8e-52, P = 6.8e-52
  =>sp|P50345|RLA0_LUPLU 60S ACIDIC RIBOSOMAL PROTEIN P0 >gi|1143507 (X93587) P0
            ribosomal protein [Lupinus luteus]
            Length = 322
	    Score = 544 (191.5 bits), Expect = 8.7e-52, P = 8.7e-52
  =>pir||R5BY0E acidic ribosomal protein P0.e, cytosolic - yeast (Saccharomyces
            cerevisiae) >gi|171806 (M37326) ribosomal protein L10e
            [Saccharomyces cerevisiae] >gi|171808 (M26506) L10e protein
            [Saccharomyces cerevisiae] >gi|171809 (M26506) L10e protein
            [Saccharomyces cerevisiae] >gi|609387 (U19028) Rpl10ep
            [Saccharomyces cerevisiae]
            Length = 312
	    Score = 541 (190.4 bits), Expect = 1.8e-51, P = 1.8e-51
  =>sp|P41095|RLA0_ORYSA 60S ACIDIC RIBOSOMAL PROTEIN P0 >gnl|PID|d1005197
            (D21130) acidic ribosomal protein P0 [Oryza sativa]
            Length = 319
	    Score = 534 (188.0 bits), Expect = 1.0e-50, P = 1.0e-50
  =>sp|P05317|RLA0_YEAST 60S ACIDIC RIBOSOMAL PROTEIN P0 (L10E) >gi|4371 (X06959)
            ribosomal protein A0 (AA 1-312) [Saccharomyces cerevisiae]
            >gnl|PID|d1000869 (D00529) acidic ribosomal protein A0
            [Saccharomyces cerevisiae]
            Length = 312
	    Score = 533 (187.6 bits), Expect = 1.3e-50, P = 1.3e-50
  =>sp|P14869|RLA0_MOUSE 60S ACIDIC RIBOSOMAL PROTEIN P0 (L10E) >pir||R5MS10
            acidic ribosomal protein P0 - mouse >gi|50026 (X15267) PO protein
            [Mus musculus]
            Length = 317
	    Score = 532 (187.3 bits), Expect = 1.6e-50, P = 1.6e-50
  =>sp|P22685|RLA0_DICDI 60S ACIDIC RIBOSOMAL PROTEIN P0 >pir||R5DOP0 ribosomal
            protein P0 - slime mold (Dictyostelium discoideum) >gi|7337
            (X56194) ribosomal acidic phosphoprotein P0 [Dictyostelium
            discoideum]
            Length = 305
	    Score = 528 (185.9 bits), Expect = 4.3e-50, P = 4.3e-50
  =>sp|P05388|RLA0_HUMAN 60S ACIDIC RIBOSOMAL PROTEIN P0 (L10E) >pir||R5HUP0
            acidic ribosomal protein P0 - human >gi|190232 (M17885) acidic
            ribosomal phosphoprotein (P0) [Homo sapiens] >gi|2935618 (AC004263)
            60S ACIDIC RIBOSOMAL PROTEIN; match to P05388 (PID:g133041) [Homo
            sapiens]
            Length = 317
	    Score = 524 (184.5 bits), Expect = 1.1e-49, P = 1.1e-49
  =>sp|P19945|RLA0_RAT 60S ACIDIC RIBOSOMAL PROTEIN P0 (L10E) >gi|450370 (Z29530)
            acidic ribosomal protein P0 [Rattus norvegicus]
            Length = 317
	    Score = 522 (183.8 bits), Expect = 1.9e-49, P = 1.9e-49
  =>pir||R5RT10 acidic ribosomal protein P0 - rat >gi|57708 (X15096) ribosomal
            phosphoprotein P0 (AA 1-316) [Rattus rattus] >prf||1718187A
            ribosomal protein P0 [Rattus rattus]
            Length = 316
	    Score = 520 (183.0 bits), Expect = 3.0e-49, P = 3.0e-49
  =>sp|P47826|RLA0_CHICK 60S ACIDIC RIBOSOMAL PROTEIN P0 (L10E) >pir||I50151
            acidic ribosomal phosphoprotein - chicken >gi|453474 (L28704)
            acidic ribosomal phosphoprotein [Gallus gallus]
            Length = 316
	    Score = 520 (183.0 bits), Expect = 3.0e-49, P = 3.0e-49
  =>sp|Q95140|RLA0_BOVIN 60S ACIDIC RIBOSOMAL PROTEIN P0 (L10E)
            Length = 309
	    Score = 516 (181.6 bits), Expect = 8.1e-49, P = 8.1e-49
  =>gi|2293577 (AF013214) acidic ribosomal phosphoprotein PO [Bos taurus]
            Length = 302
	    Score = 515 (181.3 bits), Expect = 1.0e-48, P = 1.0e-48
  =>sp|Q93572|RLA0_CAEEL 60S ACIDIC RIBOSOMAL PROTEIN P0 >gnl|PID|e264281 (Z79754)
            F25H2.10 [Caenorhabditis elegans]
            Length = 312
	    Score = 504 (177.4 bits), Expect = 1.5e-47, P = 1.5e-47
  =>sp|P19889|RLA0_DROME 60S ACIDIC RIBOSOMAL PROTEIN P0 (DEOXYRIBONUCLEASE
            (APURINIC OR APYRIMIDINIC)) (APURINIC- APYRIMIDINIC ENDONUCLEASE)
            >pir||R5FFP0 acidic ribosomal protein P0 - fruit fly (Drosophila
            melanogaster) >gi|576817 (M25772) DNA repair protein [Drosophila
            melanogaster]
            Length = 317
	    Score = 495 (174.2 bits), Expect = 1.4e-46, P = 1.4e-46
  =>sp|P29764|RLA0_CHERU 60S ACIDIC RIBOSOMAL PROTEIN P0 (LIGHT-INDUCED 34 KD
            PROTEIN) >pir||R5UBP0 acidic ribosomal protein P0 - red goosefoot
            >gi|18141 (X15206) 34kD light-induced protein [Chenopodium rubrum]
            Length = 321
	    Score = 464 (163.3 bits), Expect = 2.6e-43, P = 2.6e-43
  =>sp|Q94660|RLA0_PLAF8 60S ACIDIC RIBOSOMAL PROTEIN P0 >gi|1314858 (U56663)
            acidic ribosomal phosphoprotein PO [Plasmodium falciparum]
            Length = 319
	    Score = 415 (146.1 bits), Expect = 4.1e-38, P = 4.1e-38
  =>gi|11027 (X62144) P0 ribosomal protein (carboxy terminal) [Trypanosoma cruzi]
          Length = 78
	    Score = 372 (131.0 bits), Expect = 1.5e-33, P = 1.5e-33
  =>sp|P41198|RLA0_HALVO ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG (L10E) >pir||S34136
            ribosomal protein L10 - Haloferax volcanii >gi|313018 (X58924)
            ribosomal protein L10e [Haloferax volcanii]
            Length = 350
	    Score = 266 (93.6 bits), Expect = 2.5e-22, P = 2.5e-22
  =>sp|P15825|RLA0_HALMA ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG (L10E) (HMAL10)
            >pir||R5HS10 ribosomal protein L10 - Haloarcula marismortui
            >gi|43605 (X51430) L10 ribosomal protein (AA 1-348) [Haloarcula
            marismortui]
            Length = 348
	    Score = 255 (89.8 bits), Expect = 3.7e-21, P = 3.7e-21
  =>sp|P15826|RLA0_METVA ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG (L10E) (ML2)
            >pir||R5MX10 ribosomal protein L10 - Methanococcus vannielii
            >gi|44743 (X15352) ribosomal protein L10 [Methanococcus vannielii]
            Length = 336
	    Score = 252 (88.7 bits), Expect = 7.6e-21, P = 7.6e-21
  =>gi|2895648 (AF044919) ribosomal protein L10 [Methanococcus
            thermolithotrophicus]
            Length = 338
	    Score = 252 (88.7 bits), Expect = 7.6e-21, P = 7.6e-21
  =>gi|2622811 (AE000926) ribosomal protein Lp0 (E.coli L10) [Methanobacterium
            thermoautotrophicum]
            Length = 336
	    Score = 246 (86.6 bits), Expect = 5.0e-20, P = 5.0e-20
  =>sp|P54049|RLA0_METJA ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG (L10E) >gi|2826288
            (U67500) LSU ribosomal protein L10E [Methanococcus jannaschii]
            Length = 338
	    Score = 235 (82.7 bits), Expect = 1.1e-17, P = 1.1e-17
  =>pir||E64363 acidic ribosomal protein P0 (L10E) - Methanococcus jannaschii
            Length = 343
	    Score = 235 (82.7 bits), Expect = 1.4e-17, P = 1.4e-17
  =>gi|1814429 (U85262) ribosomal protein L10 [Sulfolobus solfataricus]
            Length = 335
	    Score = 217 (76.4 bits), Expect = 3.0e-15, P = 3.0e-15
  =>gnl|PID|d1032069 (AP000007) 342aa long hypothetical acidic ribosomal protein
            P0 (L10E) [Pyrococcus horikoshii]
            Length = 342
	    Score = 215 (75.7 bits), Expect = 6.4e-15, P = 6.4e-15
  =>sp|P35023|RLA0_SULSO ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG (L10E) (RIBOSOMAL
            PROTEIN L10) >pir||S53650 ribosomal protein L10 - Sulfolobus
            acidocaldarius >gi|763029 (X59038) ribosomal protein L10
            [Sulfolobus solfataricus]
            Length = 335
	    Score = 208 (73.2 bits), Expect = 4.3e-14, P = 4.3e-14
  =>gi|2649067 (AE000999) LSU ribosomal protein L10E (rpl10E) [Archaeoglobus
            fulgidus]
            Length = 339
	    Score = 185 (65.1 bits), Expect = 2.7e-11, P = 2.7e-11
  =>pir||S69313 probable membrane protein YLR339c - yeast (Saccharomyces
            cerevisiae) >gi|2340035 (U19028) Ylr339cp [Saccharomyces
            cerevisiae]
            Length = 183
	    Score = 155 (54.6 bits), Expect = 6.5e-10, P = 6.5e-10
  =>gnl|PID|d1033190 (AB016272) 60S acidic ribosomal protein PO [Chrysophrys
            major]
            Length = 89
	    Score = 140 (49.3 bits), Expect = 2.9e-08, P = 2.9e-08
  =>gnl|PID|d1027087 (AB009464) 203aa long hypothetical acidic ribosomal protein
            P0(L10E) [Pyrococcus horikoshii]
            Length = 203
	    Score = 144 (50.7 bits), Expect = 7.3e-08, P = 7.3e-08
  =>gnl|PID|e86639 (Z26534) Ribosomal protein L10, 60S [Arabidopsis thaliana]
            Length = 87
	    Score = 133 (46.8 bits), Expect = 1.7e-07, P = 1.7e-07
  =>sp|P33201|YKA9_YEAST HYPOTHETICAL 27.1 KD PROTEIN UFD4-CAP1 INTERGENIC REGION
            >pir||S30013 hypothetical protein YKL009w - yeast (Saccharomyces
            cerevisiae) >bbs|122761 (S53418) ribosomal protein L10 homolog
            [Saccharomyces cerevisiae=yeast, Peptide, 236 aa] [Saccharomyces
            cerevisiae] >gi|485985 (Z28009) ORF YKL009w [Saccharomyces
            cerevisiae]
            Length = 236
	    Score = 143 (50.3 bits), Expect = 5.6e-07, P = 5.6e-07
  =>sp|P51408|RLA2_TRYBB 60S ACIDIC RIBOSOMAL PROTEIN P2 >pir||S32038 acidic
            ribosomal protein P2 - Trypanosoma brucei >gi|11185 (Z21875) acidic
            ribosomal P2-type protein [Trypanosoma (Trypanozoon) brucei]
            Length = 107
	    Score = 118 (41.5 bits), Expect = 7.2e-06, P = 7.2e-06
  =>gi|2665674 (AF034539) acidic ribosomal protein-1; ARP-1 [Leishmania donovani]
            Length = 105
	    Score = 116 (40.8 bits), Expect = 1.2e-05, P = 1.2e-05
  =>pir||S59913 acidic ribosomal protein P2-beta-H1.3 - Trypanosoma cruzi
            Length = 107
	    Score = 113 (39.8 bits), Expect = 2.5e-05, P = 2.5e-05
  =>sp|Q06383|RLA2_LEIIN 60S ACIDIC RIBOSOMAL PROTEIN P2-1 >pir||A48596 acidic
            ribosomal protein LiP - Leishmania donovani infantum >gi|9519
            (X68015) acidic ribosomal protein LiP [Leishmania infantum]
            >gi|9520 (X68015) acidic ribosomal protein LiP [Leishmania
            infantum]
            Length = 106
	    Score = 112 (39.4 bits), Expect = 3.3e-05, P = 3.3e-05
  =>sp|P26795|RLA3_TRYCR 60S ACIDIC RIBOSOMAL PROTEIN P2-B (P2B) >pir||R6UT2B
            acidic ribosomal protein P2 isoform P2b - Trypanosoma cruzi
            >gi|10634 (X65065) ribosomal P2-type protein [Trypanosoma cruzi]
            Length = 112
	    Score = 112 (39.4 bits), Expect = 3.3e-05, P = 3.3e-05
  =>gi|436146 (X75032) TcP2beta gene product [Trypanosoma cruzi]
           Length = 107
	    Score = 109 (38.4 bits), Expect = 6.9e-05, P = 6.9e-05
  =>pir||S40106 gene TcP2beta protein - Trypanosoma cruzi >pir||S59912 acidic
            ribosomal protein P2-beta-H 1.8 - Trypanosoma cruzi >gnl|PID|e86246
            (X75033) TcP2beta gene product [Trypanosoma cruzi] >gi|436150
            (X75033) TcP2beta gene product [Trypanosoma cruzi]
            Length = 107
	    Score = 108 (38.0 bits), Expect = 8.8e-05, P = 8.8e-05
  =>sp|P50344|RLA1_CLAHE 60S ACIDIC RIBOSOMAL PROTEIN P1 (ALLERGEN CLA H 12) (CLA
            H XII) >gi|1143425 (X85180) ribosomal protein P1 [Cladosporium
            herbarum]
            Length = 110
	    Score = 108 (38.0 bits), Expect = 8.8e-05, P = 8.8e-05
  =>pir||S59919 acidic ribosomal protein P2.beta (X) - Trypanosoma cruzi >gi|10638
            (X69509) ribosomal protein P-JL5 [Trypanosoma cruzi]
            Length = 107
	    Score = 107 (37.7 bits), Expect = 0.00011, P = 0.00011
  =>pir||S31435 acidic ribosomal protein P2 isoform P-JL5 - Trypanosoma cruzi
            (fragment) >gi|10644 (X69508) ribosomal protein P-JL5 [Trypanosoma
            cruzi]
            Length = 106
	    Score = 106 (37.3 bits), Expect = 0.00015, P = 0.00015
  =>gi|2852437 (AF045020) acidic ribosomal P2 beta protein [Leishmania
            braziliensis]
            Length = 105
	    Score = 106 (37.3 bits), Expect = 0.00015, P = 0.00015
  =>gi|296172 (X71408) protective antigen [Plasmodium falciparum]
           Length = 81
	    Score = 105 (37.0 bits), Expect = 0.00019, P = 0.00019
  =>pir||S59918 acidic ribosomal protein P2.beta (H1.5) - Trypanosoma cruzi
            >gi|10640 (X69510) ribosomal P-JL5 protein [Trypanosoma cruzi]
            >gi|436138 (X75030) TcP2beta gene product [Trypanosoma cruzi]
            Length = 107
	    Score = 103 (36.3 bits), Expect = 0.00031, P = 0.00031
  =>pir||A45641 acidic ribosomal protein P2 - Trypanosoma cruzi (fragment)
            >gi|162144 (M72710) acidic ribosomal protein [Trypanosoma cruzi]
            Length = 105
	    Score = 102 (35.9 bits), Expect = 0.00040, P = 0.00040
  =>sp|P23632|RLA2_TRYCR 60S ACIDIC RIBOSOMAL PROTEIN P2-A (P) (P-JL5) (L12E)
            >pir||R5UT2E acidic ribosomal protein P2 isoform P-JL5 -
            Trypanosoma cruzi >gi|10636 (X52323) ribosomal P protein (P-JL5)
            [Trypanosoma cruzi]
            Length = 107
	    Score = 101 (35.6 bits), Expect = 0.00051, P = 0.00051
  =>pir||S25631 acidic ribosomal protein P2 isoform P2a-RA - Trypanosoma cruzi
            >gi|10632 (X68310) TcP2a-RA [Trypanosoma cruzi]
            Length = 106
	    Score = 100 (35.2 bits), Expect = 0.00065, P = 0.00065
  =>gi|398244 (Z25961) Ribosomal protein PO [Arabidopsis thaliana]
           Length = 78
	    Score = 100 (35.2 bits), Expect = 0.00065, P = 0.00065
  =>sp|P22683|RLA2_DICDI 60S ACIDIC RIBOSOMAL PROTEIN P2 >pir||R6DOP2 acidic
            ribosomal protein P2 - slime mold (Dictyostelium discoideum)
            >gi|7341 (X56192) ribosomal acidic phosphoprotein P2 [Dictyostelium
            discoideum]
            Length = 106
	    Score = 99 (34.8 bits), Expect = 0.00084, P = 0.00084
  =>pir||S59920 acidic ribosomal protein P2.beta (H6.4) - Trypanosoma cruzi
            >gi|436142 (X75031) TcP2beta gene product [Trypanosoma cruzi]
            Length = 107
	    Score = 98 (34.5 bits), Expect = 0.0011, P = 0.0011
  =>sp|P42038|RLA3_CLAHE 60S ACIDIC RIBOSOMAL PROTEIN P2 (ALLERGEN CLA H 3) (CLA H
            III) >pir||S41866 ribosomal P2 protein - Cladosporium herberum
            >gi|452606 (X77253) ribosomal P2 protein [Cladosporium herbarum]
            Length = 111
	    Score = 98 (34.5 bits), Expect = 0.0011, P = 0.0011
  =>gi|2623666 (AF030429) dentatorubro-pallidoluysian atrophy protein [Canis
            familiaris]
            Length = 108
	    Score = 96 (33.8 bits), Expect = 0.0018, P = 0.0018
  =>sp|P42037|RLA2_ALTAL 60S ACIDIC RIBOSOMAL PROTEIN P2 (MINOR ALLERGEN ALT A 6)
            (ALT A VI) >pir||S43109 acidic ribosomal protein P2 - Alternaria
            alternata >gi|467617 (X78222) minor allergen, ribosomal protein
            [Alternaria alternata]
            Length = 113
	    Score = 95 (33.4 bits), Expect = 0.0023, P = 0.0023
  =>gi|1850540 (U87806) ribosomal P2 phosphoprotein [Alternaria alternata]
            Length = 113
	    Score = 95 (33.4 bits), Expect = 0.0023, P = 0.0023
  =>sp|P26643|RLA1_TRYCR 60S ACIDIC RIBOSOMAL PROTEIN P1 >pir||R6UTP1 acidic
            ribosomal protein P1 - Trypanosoma cruzi >gi|10630 (X65025)
            ribosomal protein P1 [Trypanosoma cruzi]
            Length = 109
	    Score = 94 (33.1 bits), Expect = 0.0029, P = 0.0029
  =>gnl|PID|e1286962 (AJ002734) ribosomal protein rpa6 [Schizosaccharomyces pombe]
            Length = 110
	    Score = 93 (32.7 bits), Expect = 0.0038, P = 0.0038
  =>sp|P22684|RLA1_DICDI 60S ACIDIC RIBOSOMAL PROTEIN P1 >pir||R6DOP1 acidic
            ribosomal protein P1 - slime mold (Dictyostelium discoideum)
            >gi|7339 (X56193) ribosomal acidic phosphoprotein P1 [Dictyostelium
            discoideum]
            Length = 113
	    Score = 91 (32.0 bits), Expect = 0.0062, P = 0.0062
  =>sp|P52855|RLA1_MAIZE 60S ACIDIC RIBOSOMAL PROTEIN P1 (L12) >gi|1209701
            (U40147) ribosomal protein L12 [Zea mays]
            Length = 109
	    Score = 91 (32.0 bits), Expect = 0.0062, P = 0.0062
  =>gi|2431769 (U62752) acidic ribosomal protein P1a [Zea mays]
            Length = 109
	    Score = 91 (32.0 bits), Expect = 0.0062, P = 0.0062
  =>gnl|PID|d1020843 (D88685) tegument protein [Equine herpesvirus 1]
            Length = 503
	    Score = 115 (40.5 bits), Expect = 0.0075, Sum P(2) = 0.0075
  =>sp|P42039|RLA4_CLAHE 60S ACIDIC RIBOSOMAL PROTEIN P2 (MINOR ALLERGEN CLA H 4)
            (CLA H IV) >pir||S43115 acidic ribosomal protein P2 - Cladosporium
            herberum >gi|467627 (X78223) minor allergen, ribosomal protein P2
            [Cladosporium herbarum]
            Length = 111
	    Score = 90 (31.7 bits), Expect = 0.0080, P = 0.0080
  =>sp|Q29214|RLA0_PIG 60S ACIDIC RIBOSOMAL PROTEIN P0 (L10E) >gi|971805 (F14800)
            60S acidic ribosomal protein P0 [Sus scrofa]
            Length = 93
	    Score = 90 (31.7 bits), Expect = 0.0080, P = 0.0080
  =>sp|P15342|HSP2_HORSE SPERM HISTONE P2A (ST2A) >pir||S10754 protamine St2a -
            horse
            Length = 62
	    Score = 59 (20.8 bits), Expect = 0.011, Sum P(2) = 0.011
  =>sp|P08094|RLA2_SCHPO 60S ACIDIC RIBOSOMAL PROTEIN P2-ALPHA (A2) (L40C) (L12EI)
            >pir||R6BY22 acidic ribosomal protein P2.2 - fission yeast
            (Schizosaccharomyces pombe) >gi|5065 (Y00466) ribosomal protein
            L40c (AA 1-110) [Schizosaccharomyces pombe] >gi|173466 (M33138)
            ribosomal protein A2 [Schizosaccharomyces pombe]
            Length = 110
	    Score = 87 (30.6 bits), Expect = 0.017, P = 0.017
  =>gnl|PID|e1173013 (AJ002733) ribosomal protein rpa5 [Schizosaccharomyces pombe]
            Length = 110
	    Score = 87 (30.6 bits), Expect = 0.017, P = 0.017
  =>gi|3420749 (AF079447) myosin heavy chain kinase C [Dictyostelium discoideum]
            Length = 751
	    Score = 112 (39.4 bits), Expect = 0.020, P = 0.019
  =>sp|P91913|RLA1_CAEEL 60S ACIDIC RIBOSOMAL PROTEIN P1 >gi|1864155 (U89307)
            ribosomal protein P1 homolog [Caenorhabditis elegans]
            Length = 111
	    Score = 86 (30.3 bits), Expect = 0.022, P = 0.021
  =>gi|3098460 (AF040713) 60S ribosomal protein P2 [Cryptochiton stelleri]
            Length = 110
	    Score = 86 (30.3 bits), Expect = 0.022, P = 0.021
  =>gnl|PID|e1247561 (Z93395) ZC101.1 [Caenorhabditis elegans]
            Length = 475
	    Score = 108 (38.0 bits), Expect = 0.029, P = 0.029
  =>gnl|PID|d1014462 (D89103) unnamed protein product [Schizosaccharomyces pombe]
            Length = 316
	    Score = 105 (37.0 bits), Expect = 0.033, P = 0.032
  =>gnl|PID|e1250013 (AL021746) hypothetical protein [Schizosaccharomyces pombe]
            Length = 317
	    Score = 105 (37.0 bits), Expect = 0.033, P = 0.032
  =>sp|P17476|RLA1_SCHPO 60S ACIDIC RIBOSOMAL PROTEIN P1-ALPHA (A1) >pir||R6BY11
            acidic ribosomal protein P1.1 - fission yeast (Schizosaccharomyces
            pombe) >gi|173464 (M33137) ribosomal protein A1
            [Schizosaccharomyces pombe]
            Length = 109
	    Score = 84 (29.6 bits), Expect = 0.036, P = 0.035
  =>sp|P53214|YG1F_YEAST HYPOTHETICAL 57.5 KD PROTEIN IN VMA7-RPS31A INTERGENIC
            REGION >pir||S64314 probable membrane protein YGR023w - yeast
            (Saccharomyces cerevisiae) >gnl|PID|e243927 (Z72807) ORF YGR023w
            [Saccharomyces cerevisiae]
            Length = 551
	    Score = 108 (38.0 bits), Expect = 0.036, P = 0.035
  =>gi|1296429 (L77967) small proline-rich protein with paired repeat [Ovis aries]
            Length = 77
	    Score = 57 (20.1 bits), Expect = 0.036, Sum P(2) = 0.035
  =>sp|P14328|SP96_DICDI SPORE COAT PROTEIN SP96 >pir||S07638 spore coat protein
            SP96 precursor - slime mold (Dictyostelium discoideum) >gi|295736
            (X16491) spore coat protein sp96 [Dictyostelium discoideum]
            Length = 600
	    Score = 108 (38.0 bits), Expect = 0.040, P = 0.039
  =>pir||G60110 repetitive protein antigen 69/70 - Trypanosoma cruzi (fragment)
            Length = 97
	    Score = 83 (29.2 bits), Expect = 0.046, P = 0.045
  =>sp|Q04893|YM96_YEAST HYPOTHETICAL 113.1 KD PROTEIN IN PRE5-FET4 INTERGENIC
            REGION >gi|1072409 (Z54141) unknown [Saccharomyces cerevisiae]
            Length = 1140
	    Score = 110 (38.7 bits), Expect = 0.053, P = 0.052
  =>sp|P08570|RLA1_DROME 60S ACIDIC RIBOSOMAL PROTEIN P1 (RP21C) (ACIDIC RIBOSOMAL
            PROTEIN RPA2) >bbs|133185 (S62170) acidic ribosomal protein rpA2
            [Drosophila melanogaster, Kc 7E10(0) cells, Peptide, 112 aa]
            [Drosophila melanogaster]
            Length = 112
	    Score = 82 (28.9 bits), Expect = 0.059, P = 0.057
  =>sp|P05319|RLA2_YEAST 60S ACIDIC RIBOSOMAL PROTEIN P2-ALPHA (A2) (L44) (L12EIB)
            >pir||R5BYIB acidic ribosomal protein P2.e.A, cytosolic - yeast
            (Saccharomyces cerevisiae) >gi|4375 (X06958) ribosomal protein A2
            (AA 1-106) [Saccharomyces cerevisiae] >gi|171817 (M26503) L12eIB
            protein [Saccharomyces cerevisiae] >gi|172396 (J03760) ribosomal
            protein L44 [Saccharomyces cerevisiae] >gnl|PID|e251854 (Z74781)
            ORF YOL039w [Saccharomyces cerevisiae]
            Length = 106
	    Score = 82 (28.9 bits), Expect = 0.059, P = 0.057
  =>gi|1906643 (U90830) ribosomal protein rpl-21 [Oscheius brevesophaga]
            Length = 112
	    Score = 82 (28.9 bits), Expect = 0.059, P = 0.057
  =>pir||S59310 probable membrane protein YMR317w - yeast (Saccharomyces
            cerevisiae)
            Length = 1104
	    Score = 109 (38.4 bits), Expect = 0.066, P = 0.064
  =>sp|P10622|RLA3_YEAST 60S ACIDIC RIBOSOMAL PROTEIN P1-BETA (L44') (L12EIIB)
            >pir||R8BY2B acidic ribosomal protein P1.e.B, cytosolic - yeast
            (Saccharomyces cerevisiae) >gi|171815 (M26507) L12eIIB protein
            [Saccharomyces cerevisiae] >gi|172400 (M19238) ribosomal protein
            L44' [Saccharomyces cerevisiae] >gnl|PID|e253234 (Z74178) ORF
            YDL130w [Saccharomyces cerevisiae]
            Length = 106
	    Score = 81 (28.5 bits), Expect = 0.075, P = 0.073

>CcruzaQ_1355 has the following protein neighbors:
Sequence,   
  =>gi|2388584 (AC000098) EST gb|ATTS1136 comes from this gene. [Arabidopsis
            thaliana]
            Length = 402
	    Score = 82 (28.9 bits), Expect = 0.0033, Sum P(2) = 0.0033

>CcruzaQ_1067 has the following protein neighbors:
Sequence,   
  =>pir||A49798 tumor metastasis inhibitor nm23-H2 - human (fragment)
            Length = 176
	    Score = 516 (181.6 bits), Expect = 8.1e-49, P = 8.1e-49
  =>sp|P19804|NDKB_RAT NUCLEOSIDE DIPHOSPHATE KINASE B (NDK B) (NDP KINASE B)
            (P18) >pir||A38369 nucleoside-diphosphate kinase (EC 2.7.4.6)
            precursor - rat >gi|205662 (M55331) nucleoside diphosphate kinase
            [Rattus norvegicus]
            Length = 152
	    Score = 515 (181.3 bits), Expect = 1.0e-48, P = 1.0e-48
  =>sp|P22392|NDKB_HUMAN NUCLEOSIDE DIPHOSPHATE KINASE B (NDK B) (NDP KINASE B)
            (NM23-H2) (C-MYC PURINE-BINDING TRANSCRIPTION FACTOR PUF)
            >pdb|1NSK|R Homo sapiens >pdb|1NSK|L Homo sapiens >pdb|1NSK|T Homo
            sapiens >pdb|1NSK|U Homo sapiens >pdb|1NSK|N Homo sapiens
            >pdb|1NSK|O Homo sapiens >gi|189240 (M36981) nm23-H2S product
            (putative NDP kinase); putative [Homo sapiens] >gi|349476 (L16785)
            c-myc transcription factor [Homo sapiens]
            Length = 152
	    Score = 514 (180.9 bits), Expect = 1.3e-48, P = 1.3e-48
  =>sp|P27950|NDK_GINCI NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
            >gi|213271 (M63964) nucleoside diphosphate kinase [Ginglymostoma
            cirratum]
            Length = 151
	    Score = 514 (180.9 bits), Expect = 1.3e-48, P = 1.3e-48
  =>pdb|1NUE|A Homo sapiens >pdb|1NUE|B Homo sapiens >pdb|1NUE|C Homo sapiens
            >pdb|1NUE|D Homo sapiens >pdb|1NUE|E Homo sapiens >pdb|1NUE|F Homo
            sapiens
            Length = 151
	    Score = 514 (180.9 bits), Expect = 1.3e-48, P = 1.3e-48
  =>sp|Q01768|NDKB_MOUSE NUCLEOSIDE DIPHOSPHATE KINASE B (NDK B) (NDP KINASE B)
            (NM23-M2) (P18) >pir||S29241 nucleoside-diphosphate kinase (EC
            2.7.4.6) B - mouse >gi|53354 (X68193) nucleoside diphosphate kinase
            B [Mus musculus]
            Length = 152
	    Score = 513 (180.6 bits), Expect = 1.7e-48, P = 1.7e-48
  =>sp|P52175|NDKB_BOVIN NUCLEOSIDE DIPHOSPHATE KINASE NBR-B (NDK NBR-B) (NDP
            KINASE NBR-B) >gi|1064897 (X92957) nucleoside-diphosphate kinase
            NBR-B [Bos taurus]
            Length = 152
	    Score = 512 (180.2 bits), Expect = 2.1e-48, P = 2.1e-48
  =>sp|P52174|NDKA_BOVIN NUCLEOSIDE DIPHOSPHATE KINASE NBR-A (NDK NBR-A) (NDP
            KINASE NBR-A) >gi|1064895 (X92956) nucleoside-diphosphate kinase
            NBR-A [Bos taurus]
            Length = 152
	    Score = 511 (179.9 bits), Expect = 2.7e-48, P = 2.7e-48
  =>sp|Q05982|NDKA_RAT NUCLEOSIDE DIPHOSPHATE KINASE A (NDK A) (NDP KINASE A)
            (TUMOR METASTATIC PROCESS-ASSOCIATED PROTEIN) (METASTASIS
            INHIBITION FACTOR NM23) >pir||A45208 nucleoside diphosphate kinase
            beta isoform - rat >gnl|PID|d1003139 (D13374) nucleoside
            diphosphate kinase beta isoform [Rattus norvegicus]
            Length = 152
	    Score = 509 (179.2 bits), Expect = 4.5e-48, P = 4.5e-48
  =>sp|P36010|NDK_YEAST NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
            >pir||S37889 nucleoside-diphosphate kinase (EC 2.7.4.6) - yeast
            (Saccharomyces cerevisiae) >gi|433632 (X75780) A153 [Saccharomyces
            cerevisiae] >gnl|PID|d1003263 (D13562) nucleoside diphosphate
            kinase [Saccharomyces cerevisiae] >gi|486093 (Z28067) ORF YKL067w
            [Saccharomyces cerevisiae] >prf||2206496H nucleoside diphosphate
            kinase [Saccharomyces cerevisiae]
            Length = 153
	    Score = 508 (178.8 bits), Expect = 5.7e-48, P = 5.7e-48
  =>gi|35068 (X17620) Nm23 protein [Homo sapiens] >prf||1516349B nm23 gene [Homo
          sapiens]
          Length = 180
	    Score = 508 (178.8 bits), Expect = 5.7e-48, P = 5.7e-48
  =>gi|206580 (M91597) RBL-NDP kinase 18kDa subunit (p18) [Rattus norvegicus]
           Length = 152
	    Score = 508 (178.8 bits), Expect = 5.7e-48, P = 5.7e-48
  =>gnl|PID|e246549 (X97902) NM23/nucleoside diphosphate kinase [Xenopus laevis]
            Length = 154
	    Score = 508 (178.8 bits), Expect = 5.7e-48, P = 5.7e-48
  =>sp|P15531|NDKA_HUMAN NUCLEOSIDE DIPHOSPHATE KINASE A (NDK A) (NDP KINASE A)
            (TUMOR METASTATIC PROCESS-ASSOCIATED PROTEIN) (METASTASIS
            INHIBITION FACTOR NM23) (NM23-H1) >pir||A33386
            nucleoside-diphosphate kinase (EC 2.7.4.6) chain A - human
            >gi|312824 (X73066) NM23H1 gene product [Homo sapiens] >gi|468542
            (X75598) nm23H1g gene product [Homo sapiens]
            Length = 152
	    Score = 506 (178.1 bits), Expect = 9.3e-48, P = 9.3e-48
  =>gi|2827444 (AF043542) nucleoside diphosphate kinase [Gallus gallus]
            Length = 153
	    Score = 505 (177.8 bits), Expect = 1.2e-47, P = 1.2e-47
  =>gnl|PID|e246063 (X97899) NM23/nucleoside diphosphate kinase [Xenopus laevis]
            >gnl|PID|e246065 (X97901) NM23/nucleoside diphosphate kinase
            [Xenopus laevis]
            Length = 154
	    Score = 503 (177.1 bits), Expect = 1.9e-47, P = 1.9e-47
  =>pir||A46557 tumor metastasis inhibitor NM23 - mouse (fragment) >gi|387496
            (M35970) tumor metastatic process-associated protein NM23 [Mus
            musculus] >prf||1516349A nm23 gene [Mus musculus]
            Length = 166
	    Score = 502 (176.7 bits), Expect = 2.5e-47, P = 2.5e-47
  =>sp|P15532|NDKA_MOUSE NUCLEOSIDE DIPHOSPHATE KINASE A (NDK A) (NDP KINASE A)
            (TUMOR METASTATIC PROCESS-ASSOCIATED PROTEIN) (METASTASIS
            INHIBITION FACTOR NM23) >gi|200069 (M65037) protein nm23 [Mus
            musculus] >gi|1816594 (U85511) nucleoside diphosphate kinase A long
            form [Mus musculus] >gi|2654092 (AF033377) nucleoside diphosphate
            kinase A [Mus musculus]
            Length = 152
	    Score = 501 (176.4 bits), Expect = 3.1e-47, P = 3.1e-47
  =>gnl|PID|e246064 (X97900) NM23/nucleoside diphosphate kinase [Xenopus laevis]
            Length = 154
	    Score = 501 (176.4 bits), Expect = 3.1e-47, P = 3.1e-47
  =>sp|Q90380|NDK_COLLI NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
            >gi|2264338 (U61287) nucleoside diphosphate kinase [Columba livia]
            >gi|2415423 (AF018266) nucleoside diphosphate kinase [Columba
            livia]
            Length = 153
	    Score = 500 (176.0 bits), Expect = 4.0e-47, P = 4.0e-47
  =>sp|P08879|NDKA_DROME NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
            (ABNORMAL WING DISCS PROTEIN) (KILLER-OF-PRUNE PROTEIN)
            >pir||S01908 awd protein - fruit fly (Drosophila melanogaster)
            >pdb|1NDL|A Drosophila melanogaster >pdb|1NDL|B Drosophila
            melanogaster >pdb|1NDL|C Drosophila melanogaster >pdb|1NSQ|A
            Drosophila melanogaster >pdb|1NSQ|B Drosophila melanogaster
            >pdb|1NSQ|C Drosophila melanogaster >gi|7635 (X13107) put. awd
            protein [Drosophila melanogaster]
            Length = 153
	    Score = 495 (174.2 bits), Expect = 1.4e-46, P = 1.4e-46
  =>pir||S60363 nucleoside diphosphate kinase III - spinach >bbs|166753 nucleoside
            diphosphate kinase type III, NDP kinase III {EC 2.7.4.6} [Spinacia
            oleracea=spinach, leaves, Peptide, 153 aa] >prf||2110218A NDP
            kinase [Spinacia oleracea]
            Length = 153
	    Score = 490 (172.5 bits), Expect = 4.6e-46, P = 4.6e-46
  =>sp|P48817|NDK_BRUMA NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
            >pir||JC4359 nucleoside-diphosphate kinase (EC 2.7.4.6) - nematode
            (Brugia malayi) >gi|619943 (U18906) nucleoside diphosphate kinase
            [Brugia malayi]
            Length = 153
	    Score = 488 (171.8 bits), Expect = 7.5e-46, P = 7.5e-46
  =>sp|P47920|NDKB_FLABI NUCLEOSIDE DIPHOSPHATE KINASE B (NDK B) (NDP KINASE B)
            >gi|499112 (U10283) nucleoside diphosphate kinase [Flaveria
            bidentis]
            Length = 148
	    Score = 483 (170.0 bits), Expect = 2.5e-45, P = 2.5e-45
  =>gi|2895763 (AF045187) nucleoside diphosphate kinase [Salmo salar]
            Length = 151
	    Score = 479 (168.6 bits), Expect = 6.7e-45, P = 6.7e-45
  =>gi|2829275 (AF044265) nucleoside diphosphate kinase 3 [Arabidopsis thaliana]
            Length = 238
	    Score = 478 (168.3 bits), Expect = 8.6e-45, P = 8.6e-45
  =>sp|Q96559|NDK_HELAN NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
            >gi|1619958 (U72142) nucleoside diphosphate kinase [Helianthus
            annuus]
            Length = 148
	    Score = 477 (167.9 bits), Expect = 1.1e-44, P = 1.1e-44
  =>gi|3309053 (AF072289) nucleoside diphosphate kinase I [Mesembryanthemum
            crystallinum]
            Length = 148
	    Score = 477 (167.9 bits), Expect = 1.1e-44, P = 1.1e-44
  =>sp|Q02254|NDK1_SPIOL NUCLEOSIDE DIPHOSPHATE KINASE I (NDK I) (NDP KINASE I)
            >pir||S24165 nucleoside-diphosphate kinase (EC 2.7.4.6) I - spinach
            >gnl|PID|d1001985 (D10659) nucleoside diphosphate kinase I
            [Spinacia oleracea]
            Length = 148
	    Score = 475 (167.2 bits), Expect = 1.8e-44, P = 1.8e-44
  =>gnl|PID|e264285 (Z79754) F25H2.5 [Caenorhabditis elegans]
            Length = 153
	    Score = 475 (167.2 bits), Expect = 1.8e-44, P = 1.8e-44
  =>pir||I39074 gene DR-nm23 protein - human >gi|1051256 (U29656) DR-nm23 gene
            product [Homo sapiens]
            Length = 168
	    Score = 473 (166.5 bits), Expect = 2.9e-44, P = 2.9e-44
  =>sp|P47919|NDKA_FLABI NUCLEOSIDE DIPHOSPHATE KINASE A (NDK A) (NDP KINASE A)
            >gi|499110 (U10282) nucleoside diphosphate kinase [Flaveria
            bidentis]
            Length = 148
	    Score = 471 (165.8 bits), Expect = 4.7e-44, P = 4.7e-44
  =>sp|P93554|NDK1_SACOF NUCLEOSIDE DIPHOSPHATE KINASE I (NDK I) (NDP KINASE I)
            (PP18) >gi|1777930 (U55019) nucleoside diphosphate kinase
            [Saccharum officinarum]
            Length = 149
	    Score = 470 (165.4 bits), Expect = 6.1e-44, P = 6.1e-44
  =>sp|P47922|NDK1_PEA NUCLEOSIDE DIPHOSPHATE KINASE I (NDK I) (NDP KINASE I)
            (NDPK I) >pir||S33170 nucleoside-diphosphate kinase (EC 2.7.4.6) -
            garden pea >pir||S46513 nucleoside-diphosphate kinase (EC 2.7.4.6)
            - garden pea >gi|296174 (X71388) nucleoside-diphosphate kinase
            [Pisum sativum]
            Length = 149
	    Score = 466 (164.0 bits), Expect = 1.6e-43, P = 1.6e-43
  =>gnl|PID|d1013667 (D86052) PNDKN1 [Pisum sativum]
            Length = 149
	    Score = 466 (164.0 bits), Expect = 1.6e-43, P = 1.6e-43
  =>sp|P49740|NDK_SCHPO NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
            >gnl|PID|d1010475 (D63678) Nucleoside Diphosphate Kinase
            [Schizosaccharomyces pombe]
            Length = 151
	    Score = 464 (163.3 bits), Expect = 2.6e-43, P = 2.6e-43
  =>sp|P39207|NDK_ARATH NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
            >gi|3169310 (AF017641) nucleoside diphosphate kinase type 1
            [Arabidopsis thaliana]
            Length = 149
	    Score = 461 (162.3 bits), Expect = 5.4e-43, P = 5.4e-43
  =>pir||B49547 nucleoside-diphosphate kinase (EC 2.7.4.6) precursor,
            mitochondrial - slime mold (Dictyostelium discoideum)
            Length = 220
	    Score = 457 (160.9 bits), Expect = 1.4e-42, P = 1.4e-42
  =>pir||S31444 nucleoside-diphosphate kinase (EC 2.7.4.6) - Arabidopsis thaliana
            (fragment) >gi|16396 (X69373) nucleoside diphosphate kinase
            [Arabidopsis thaliana]
            Length = 147
	    Score = 456 (160.5 bits), Expect = 1.8e-42, P = 1.8e-42
  =>sp|P50590|NDK_SYNP7 NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
            >gi|1054891 (U30252) nucleoside diphosphate kinase [Synechococcus
            PCC7942]
            Length = 151
	    Score = 455 (160.2 bits), Expect = 2.4e-42, P = 2.4e-42
  =>sp|P47921|NDK_LYCES NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
            >pir||S47974 nucleoside diphosphate kinase - tomato
            Length = 144
	    Score = 455 (160.2 bits), Expect = 2.4e-42, P = 2.4e-42
  =>sp|P22887|NDKC_DICDI NUCLEOSIDE DIPHOSPHATE KINASE, CYTOSOLIC (NDK) (NDP
            KINASE) >pir||A49547 nucleoside-diphosphate kinase (EC 2.7.4.6),
            cytosolic - slime mold (Dictyostelium discoideum) >pdb|1NDP|A
            Dictyostelium discoideum >pdb|1NDP|B Dictyostelium discoideum
            >pdb|1NDC|  Nucleoside Diphosphate Kinase (E.C.2.7.4.6) Complexed
            With 2'-Deoxythymidine Diphosphate >pdb|1NSP|  Nucleoside
            Diphosphate Kinase (E.C.2.7.4.6) >pdb|1KDN|A Dictyostelium
            discoideum >pdb|1KDN|B Dictyostelium discoideum >pdb|1KDN|C
            Dictyostelium discoideum >gi|167843 (J05457) nucleoside diphosphate
            kinase Gip17 (EC 2.7.4.6) [Dictyostelium discoideum] >gi|349363
            (L23067) nucleoside diphosphate kinase [Dictyostelium discoideum]
            Length = 155
	    Score = 454 (159.8 bits), Expect = 3.0e-42, P = 3.0e-42
  =>pdb|1NPK|  Nucleoside Diphosphate Kinase (E.C.2.7.4.6)
            Length = 154
	    Score = 454 (159.8 bits), Expect = 3.0e-42, P = 3.0e-42
  =>sp|Q39839|NDK1_SOYBN NUCLEOSIDE DIPHOSPHATE KINASE I (NDK I) (NDP KINASE I)
            >gi|1236951 (U50150) nucleoside diphosphate kinase [Glycine max]
            Length = 149
	    Score = 452 (159.1 bits), Expect = 4.9e-42, P = 4.9e-42
  =>sp|Q07661|NDK1_ORYSA NUCLEOSIDE DIPHOSPHATE KINASE I (NDK I) (NDP KINASE I)
            >pir||S43330 nucleoside-diphosphate kinase (EC 2.7.4.6) - rice
            >gnl|PID|d1004314 (D16292) nucleoside diphosphate kinase [Oryza
            sativa]
            Length = 149
	    Score = 447 (157.4 bits), Expect = 1.7e-41, P = 1.7e-41
  =>gi|575953 (X75324) nucleoside diphosphate kinase [Lycopersicon esculentum]
           Length = 142
	    Score = 446 (157.0 bits), Expect = 2.1e-41, P = 2.1e-41
  =>pdb|1LEO|  P100s Nucleoside Diphosphate Kinase Enzyme, Transferase, Kinase
            Mol_id: 1; Molecule: Nucleoside Diphosphate Kinase; Chain: Null;
            Synonym: Ndp Kinase; Ec: 2.7.4.6; Engineered: Yes; Mutation: P100s
            Length = 150
	    Score = 446 (157.0 bits), Expect = 2.1e-41, P = 2.1e-41
  =>pdb|1LWX|A Dictyostelium discoideum >pdb|1LWX|B Dictyostelium discoideum
            >pdb|1LWX|C Dictyostelium discoideum
            Length = 155
	    Score = 446 (157.0 bits), Expect = 2.1e-41, P = 2.1e-41
  =>pdb|1NCL|  Thermal Stability Of Hexameric And Tetrameric Nucleoside,
            Diphosphate Kinases Enzyme, Transferase, Kinase, Atp-Binding
            Mol_id: 1; Molecule: Nucleoside Diphosphate Kinase; Chain: Null;
            Synonym: Ndk, Ndp Kinase; Ec: 2.7.4.6; Enginee...
            Length = 150
	    Score = 445 (156.6 bits), Expect = 2.7e-41, P = 2.7e-41
  =>pdb|1NDK|  Nucleoside Diphosphate Kinase (E.C.2.7.4.6) Mutant With His 122
            Replaced By Cys (H122c)
            Length = 155
	    Score = 443 (155.9 bits), Expect = 4.4e-41, P = 4.4e-41
  =>sp|Q01402|NDK2_SPIOL NUCLEOSIDE DIPHOSPHATE KINASE II PRECURSOR (NDK II) (NDP
            KINASE II) >pir||S28226 nucleoside-diphosphate kinase (EC 2.7.4.6)
            II - spinach >gnl|PID|d1002500 (D11465) nucleoside diphosphate
            kinase II [Spinacia oleracea]
            Length = 233
	    Score = 435 (153.1 bits), Expect = 3.1e-40, P = 3.1e-40
  =>sp|P34093|NDKM_DICDI NUCLEOSIDE DIPHOSPHATE KINASE, MITOCHONDRIAL PRECURSOR
            (NDK) (NDP KINASE) >gi|349365 (L23068) nucleoside diphosphate
            kinase [Dictyostelium discoideum]
            Length = 220
	    Score = 435 (153.1 bits), Expect = 3.1e-40, P = 3.1e-40
  =>gi|2649839 (AE001051) nucleoside diphosphate kinase (ndk) [Archaeoglobus
            fulgidus]
            Length = 151
	    Score = 435 (153.1 bits), Expect = 3.1e-40, P = 3.1e-40
  =>sp|P74494|NDK_SYNY3 NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
            >gnl|PID|d1019329 (D90915) nucleoside diphosphate kinase
            [Synechocystis sp.]
            Length = 149
	    Score = 434 (152.8 bits), Expect = 4.0e-40, P = 4.0e-40
  =>gi|3063661 (AF058391) nucleoside diphosphate kinase Ia [Arabidopsis thaliana]
            Length = 152
	    Score = 431 (151.7 bits), Expect = 8.2e-40, P = 8.2e-40
  =>sp|O00746|NDKM_HUMAN NUCLEOSIDE DIPHOSPHATE KINASE, MITOCHONDRIAL PRECURSOR
            (NDP KINASE, MITOCHONDRIAL) (NDK) (NM23-H4) >gnl|PID|e291906
            (Y07604) nucleoside-diphosphate kinase [Homo sapiens]
            Length = 187
	    Score = 428 (150.7 bits), Expect = 1.7e-39, P = 1.7e-39
  =>gi|2935619 (AC004263) Nucleoside Diphosphate Kinase; similar to A49798
            (PID:g539703) [Homo sapiens]
            Length = 137
	    Score = 428 (150.7 bits), Expect = 1.7e-39, P = 1.7e-39
  =>sp|P47923|NDK2_PEA NUCLEOSIDE DIPHOSPHATE KINASE II PRECURSOR (NDK II) (NDP
            KINASE II) (NDPK II) >pir||S52785 nucleoside-diphosphate kinase (EC
            2.7.4.6) II, precursor - garden pea >gi|758644 (Z37990) nucleoside
            diphosphate kinase II, precursor [Pisum sativum]
            Length = 230
	    Score = 427 (150.3 bits), Expect = 2.2e-39, P = 2.2e-39
  =>gi|3093480 (AF017640) nucleoside diphosphate kinase type 2 [Arabidopsis
            thaliana]
            Length = 231
	    Score = 424 (149.3 bits), Expect = 4.5e-39, P = 4.5e-39
  =>pir||S31446 nucleoside-diphosphate kinase (EC 2.7.4.6) - Arabidopsis thaliana
            >gi|16398 (X69376) nucleoside diphosphate kinase [Arabidopsis
            thaliana]
            Length = 148
	    Score = 400 (140.8 bits), Expect = 1.6e-36, P = 1.6e-36
  =>sp|P31103|NDK_BACSU NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
            >gi|143804 (M80245) Ndk [Bacillus subtilis] >gnl|PID|e1183718
            (Z99115) nucleoside diphosphate kinase [Bacillus subtilis]
            Length = 149
	    Score = 399 (140.5 bits), Expect = 2.0e-36, P = 2.0e-36
  =>sp|P87355|NDKM_COLLI NUCLEOSIDE DIPHOSPHATE KINASE, MITOCHONDRIAL PRECURSOR
            (NDP KINASE, MITOCHONDRIAL) (NDK) >gi|2262068 (U89605) nucleoside
            diphosphate kinase [Columba livia]
            Length = 165
	    Score = 397 (139.8 bits), Expect = 3.3e-36, P = 3.3e-36
  =>gi|2415425 (AF018267) nucleoside diphosphate kinase [Columba livia]
            Length = 157
	    Score = 394 (138.7 bits), Expect = 6.9e-36, P = 6.9e-36
  =>gi|2827446 (AF043543) nucleoside diphosphate kinase [Gallus gallus]
            Length = 157
	    Score = 388 (136.6 bits), Expect = 3.0e-35, P = 3.0e-35
  =>sp|P50588|NDK_STAAU NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
            >gi|987497 (U31979) nucleoside diphosphate kinase [Staphylococcus
            aureus]
            Length = 149
	    Score = 377 (132.7 bits), Expect = 4.3e-34, P = 4.3e-34
  =>gi|2621308 (AE000812) nucleoside diphosphate kinase [Methanobacterium
            thermoautotrophicum]
            Length = 151
	    Score = 356 (125.3 bits), Expect = 7.3e-32, P = 7.3e-32
  =>gnl|PID|d1030732 (AP000003) 160aa long hypothetical nucleoside-diphosphate
            kinase [Pyrococcus horikoshii]
            Length = 160
	    Score = 349 (122.9 bits), Expect = 4.0e-31, P = 4.0e-31
  =>sp|Q58661|NDK_METJA NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
            >pir||H64457 nucleoside-diphosphate kinase (EC 2.7.4.6) -
            Methanococcus jannaschii >gi|1591900 (U67567) nucleoside
            diphosphate kinase, (ndk) [Methanococcus jannaschii]
            Length = 140
	    Score = 332 (116.9 bits), Expect = 2.5e-29, P = 2.5e-29
  =>gnl|PID|e1299821 (Z81451) ndkA [Mycobacterium tuberculosis]
            Length = 136
	    Score = 328 (115.5 bits), Expect = 6.8e-29, P = 6.8e-29
  =>sp|P15266|NDK_MYXXA NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
            >pir||A35539 nucleoside-diphosphate kinase (EC 2.7.4.6) -
            Myxococcus xanthus >gi|150100 (J05207) nucleoside 5'-diphosphate
            phosphotransferase (EC 2.7.4.6) [Myxococcus xanthus]
            Length = 145
	    Score = 326 (114.8 bits), Expect = 1.1e-28, P = 1.1e-28
  =>pdb|2NCK|R Myxococcus xanthus >pdb|2NCK|L Myxococcus xanthus >pdb|1NLK|R
            Myxococcus xanthus >pdb|1NLK|L Myxococcus xanthus >pdb|1NHK|R
            Myxococcus xanthus >pdb|1NHK|L Myxococcus xanthus
            Length = 144
	    Score = 323 (113.7 bits), Expect = 2.3e-28, P = 2.3e-28
  =>gi|3242976 (AF069544) nucleoside diphosphate kinase [Mycobacterium smegmatis]
            Length = 139
	    Score = 323 (113.7 bits), Expect = 2.3e-28, P = 2.3e-28
  =>sp|P24233|NDK_ECOLI NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
            >pir||JH0495 nucleoside-diphosphate kinase (EC 2.7.4.6) -
            Escherichia coli >gi|416172 (X57555) nucleoside diphosphate kinase
            [Escherichia coli] >gi|1788866 (AE000338) nucleoside diphosphate
            kinase (ndk) [Escherichia coli] >gnl|PID|d1017135 (D90881)
            nucleoside-diphosphate kinase (EC 2.7.4.6) [Escherichia coli]
            >gnl|PID|d1017139 (D90882) nucleoside-diphosphate kinase (EC
            2.7.4.6) [Escherichia coli]
            Length = 143
	    Score = 314 (110.5 bits), Expect = 2.1e-27, P = 2.1e-27
  =>gi|3323338 (AE001269) nucleoside-diphosphate kinase (ndk) [Treponema pallidum]
            Length = 149
	    Score = 312 (109.8 bits), Expect = 3.4e-27, P = 3.4e-27
  =>gi|1246364 (L37442) thymidylate:zeocin resistance protein:NDP kinase fusion
            protein [Cloning vector pZEO-SG4]
            Length = 494
	    Score = 314 (110.5 bits), Expect = 4.2e-27, P = 4.2e-27
  =>sp|Q59636|NDK_PSEAE NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
            >gi|1353658 (U41267) Ndk [Pseudomonas aeruginosa]
            Length = 143
	    Score = 310 (109.1 bits), Expect = 5.5e-27, P = 5.5e-27
  =>sp|P43802|NDK_HAEIN NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
            >pir||D64099 nucleoside diphosphate kinase (ndk) homolog -
            Haemophilus influenzae (strain Rd KW20) >gi|1573893 (U32769)
            nucleoside diphosphate kinase (ndk) [Haemophilus influenzae Rd]
            Length = 141
	    Score = 307 (108.1 bits), Expect = 1.1e-26, P = 1.1e-26
  =>sp|P50589|NDK_STRCO NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
            >pir||S68956 nucleoside-diphosphate kinase (EC 2.7.4.6) -
            Streptomyces coelicolor >gnl|PID|e222437 (X95643)
            nucleoside-diphosphate kinase [Streptomyces coelicolor]
            Length = 137
	    Score = 298 (104.9 bits), Expect = 1.0e-25, P = 1.0e-25
  =>sp|P56075|NDK_HELPY NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
            >gi|2313289 (AE000540) nucleoside diphosphate kinase (ndk)
            [Helicobacter pylori]
            Length = 137
	    Score = 295 (103.8 bits), Expect = 2.1e-25, P = 2.1e-25
  =>gnl|PID|e318769 (Y13070) nucleoside diphosphate kinase [Streptomyces
            coelicolor]
            Length = 137
	    Score = 294 (103.5 bits), Expect = 2.7e-25, P = 2.7e-25
  =>gi|3328937 (AE001323) Nucleoside-2-P Kinase [Chlamydia trachomatis]
            Length = 141
	    Score = 285 (100.3 bits), Expect = 2.4e-24, P = 2.4e-24
  =>sp|P95653|NDK_RHOSU NUCLEOSIDE DIPHOSPHATE KINASE (NDK) (NDP KINASE)
            >gi|1754676 (U81968) nucleoside-diphosphate-kinase [Rhodovulum
            sulfidophilum]
            Length = 140
	    Score = 278 (97.9 bits), Expect = 1.3e-23, P = 1.3e-23
  =>gi|2983932 (AE000746) nucleoside diphosphate kinase [Aquifex aeolicus]
            Length = 142
	    Score = 269 (94.7 bits), Expect = 1.2e-22, P = 1.2e-22
  =>gi|972280 (F14740) Nm23 protein [Sus scrofa]
           Length = 93
	    Score = 263 (92.6 bits), Expect = 5.2e-22, P = 5.2e-22
  =>gi|2688377 (AE001151) nucleoside-diphosphate kinase (ndk) [Borrelia
            burgdorferi]
            Length = 169
	    Score = 245 (86.2 bits), Expect = 4.2e-20, P = 4.2e-20
  =>gi|17393 (Z18791) AWD PROTEIN [Arabidopsis thaliana]
          Length = 77
	    Score = 227 (79.9 bits), Expect = 3.7e-18, P = 3.7e-18
  =>gi|3220239 (AF067724) testis-specific nm23 homolog [Homo sapiens]
            Length = 212
	    Score = 178 (62.7 bits), Expect = 1.6e-12, P = 1.6e-12
  =>gi|3228530 (AF051941) type 5 nucleoside diphosphate kinase NM23-H5 [Homo
            sapiens]
            Length = 186
	    Score = 168 (59.1 bits), Expect = 2.1e-11, P = 2.1e-11
  =>gi|3228532 (AF051942) type 5 nucleoside diphosphate kinase NM23-M5 [Mus
            musculus]
            Length = 189
	    Score = 163 (57.4 bits), Expect = 7.6e-11, P = 7.6e-11
  =>gi|3228534 (AF051943) type 5 nucleoside diphosphate kinase NM23-R5 [Rattus
            norvegicus]
            Length = 175
	    Score = 159 (56.0 bits), Expect = 2.1e-10, P = 2.1e-10
  =>gi|1304478 (U38795) nucloside diphosphate kinase [Rattus norvegicus]
            Length = 42
	    Score = 148 (52.1 bits), Expect = 3.4e-09, P = 3.4e-09
  =>gnl|PID|d1014452 (D89068) nucleoside diphosphate kinase alpha isoform [Rattus
            norvegicus]
            Length = 42
	    Score = 144 (50.7 bits), Expect = 9.4e-09, P = 9.4e-09
  =>gnl|PID|d1010582 (D63884) intermediate chain 1 [Anthocidaris crassispina]
            Length = 837
	    Score = 169 (59.5 bits), Expect = 9.9e-09, P = 9.9e-09
  =>pir||JN0281 differentiation-inhibiting factor - mouse (fragments)
            Length = 57
	    Score = 124 (43.7 bits), Expect = 1.5e-06, P = 1.5e-06
  =>bbs|171415 nucleoside-diphosphate kinase, NDPK {N-terminal} [Candida albicans,
            Peptide Partial, 21 aa]
            Length = 21
	    Score = 87 (30.6 bits), Expect = 0.016, P = 0.016
  =>pir||S47563 nucleoside diphosphate kinase homolog - oat >bbs|152843 nucleoside
            diphosphate kinase, NDPK=Nm23 protein homolog {N-terminal} {EC
            2.7.4.6} [Avena sativa=oats, Garry, Peptide Partial, 24 aa]
            Length = 24
	    Score = 85 (29.9 bits), Expect = 0.026, P = 0.026
  =>pir||S68023 nucleoside-diphosphate kinase - yeast (Candida albicans)
            (fragments)
            Length = 21
	    Score = 82 (28.9 bits), Expect = 0.055, P = 0.054

>CcruzaQ_131 has the following protein neighbors:
Sequence,   
  =>pir||A45629 cruzipain - Trypanosoma cruzi
            Length = 467
	    Score = 1156 (406.9 bits), Expect = 7.7e-146, Sum P(3) = 7.7e-146
  =>gi|2352469 (AF004594) cysteine protease [Trypanosoma cruzi]
            Length = 471
	    Score = 1006 (354.1 bits), Expect = 2.7e-141, Sum P(4) = 2.7e-141
  =>gi|1136308 (U41454) cruzipain [Trypanosoma cruzi]
            Length = 467
	    Score = 1125 (396.0 bits), Expect = 9.9e-140, Sum P(2) = 9.9e-140
  =>sp|P25779|CYSP_TRYCR CRUZIPAIN PRECURSOR (MAJOR CYSTEINE PROTEINASE)
            (CRUZAINE) >pir||A60667 cysteine proteinase cruzain (EC 3.4.22.-) -
            Trypanosoma cruzi >gi|162048 (M84342) cruzain [Trypanosoma cruzi]
            Length = 467
	    Score = 1117 (393.2 bits), Expect = 6.9e-139, Sum P(2) = 6.9e-139
  =>gi|162334 (M69121) cysteine proteinase [Trypanosoma cruzi]
           Length = 249
	    Score = 1156 (406.9 bits), Expect = 3.4e-131, Sum P(3) = 3.4e-131
  =>gi|577617 (M90067) cysteine proteinase [Trypanosoma cruzi]
           Length = 467
	    Score = 1019 (358.7 bits), Expect = 9.0e-122, Sum P(2) = 9.0e-122
  =>pir||S16162 cruzipain (EC 3.4.22.-) - Trypanosoma cruzi (fragment) >gi|10606
            (X54414) cysteine proteinase [Trypanosoma cruzi]
            Length = 173
	    Score = 912 (321.0 bits), Expect = 8.8e-91, P = 8.8e-91
  =>prf||2117247A Cys protease:ISOTYPE=1 [Trypanosoma rangeli]
            Length = 467
	    Score = 724 (254.9 bits), Expect = 2.3e-87, Sum P(2) = 2.3e-87
  =>prf||2117247C Cys protease:ISOTYPE=3 [Trypanosoma rangeli]
            Length = 469
	    Score = 724 (254.9 bits), Expect = 2.3e-87, Sum P(2) = 2.3e-87
  =>prf||2117247B Cys protease:ISOTYPE=2 [Trypanosoma rangeli]
            Length = 467
	    Score = 724 (254.9 bits), Expect = 3.8e-87, Sum P(2) = 3.8e-87
  =>gi|2865314 (AF023625) cysteine proteinase [Trypanosoma cruzi] >gi|2865316
            (AF023626) cysteine proteinase [Trypanosoma cruzi] >gi|2865326
            (AF023631) cysteine proteinase [Trypanosoma cruzi] >gi|2865330
            (AF023633) cysteine proteinase [Trypanosoma cruzi] >gi|2865338
            (AF023637) cysteine proteinase [Trypanosoma cruzi] >gi|2865374
            (AF023655) cysteine proteinase [Trypanosoma cruzi] >gi|2865376
            (AF023656) cysteine proteinase [Trypanosoma cruzi]
            Length = 135
	    Score = 722 (254.2 bits), Expect = 1.2e-70, P = 1.2e-70
  =>pir||S12099 cysteine proteinase (EC 3.4.22.-) precursor - Trypanosoma brucei
            >gi|10391 (X54353) protease precursor (450 AA) [Trypanosoma
            (Trypanozoon) brucei]
            Length = 450
	    Score = 571 (201.0 bits), Expect = 2.8e-70, Sum P(2) = 2.8e-70
  =>gi|2865348 (AF023642) cysteine proteinase [Trypanosoma cruzi]
            Length = 135
	    Score = 718 (252.7 bits), Expect = 3.2e-70, P = 3.2e-70
  =>gi|2865332 (AF023634) cysteine proteinase [Trypanosoma cruzi]
            Length = 135
	    Score = 714 (251.3 bits), Expect = 8.4e-70, P = 8.4e-70
  =>gi|2865350 (AF023643) cysteine proteinase [Trypanosoma cruzi]
            Length = 135
	    Score = 714 (251.3 bits), Expect = 8.4e-70, P = 8.4e-70
  =>sp|P14658|CYSP_TRYBB CYSTEINE PROTEINASE PRECURSOR >pir||S07051 cysteine
            proteinase (EC 3.4.22.-) precursor - Trypanosoma brucei >gi|10393
            (X16465) cysteine proteinase [Trypanosoma (Trypanozoon) brucei]
            Length = 450
	    Score = 566 (199.2 bits), Expect = 9.4e-70, Sum P(2) = 9.4e-70
  =>gi|2865346 (AF023641) cysteine proteinase [Trypanosoma cruzi]
            Length = 135
	    Score = 712 (250.6 bits), Expect = 1.4e-69, P = 1.4e-69
  =>gi|2865340 (AF023638) cysteine proteinase [Trypanosoma cruzi] >gi|2865364
            (AF023650) cysteine proteinase [Trypanosoma cruzi] >gi|2865368
            (AF023652) cysteine proteinase [Trypanosoma cruzi]
            Length = 135
	    Score = 710 (249.9 bits), Expect = 2.2e-69, P = 2.2e-69
  =>gi|2865312 (AF023624) cysteine proteinase [Trypanosoma cruzi] >gi|2865318
            (AF023627) cysteine proteinase [Trypanosoma cruzi] >gi|2865320
            (AF023628) cysteine proteinase [Trypanosoma cruzi] >gi|2865322
            (AF023629) cysteine proteinase [Trypanosoma cruzi] >gi|2865334
            (AF023635) cysteine proteinase [Trypanosoma cruzi] >gi|2865356
            (AF023646) cysteine proteinase [Trypanosoma cruzi] >gi|2865358
            (AF023647) cysteine proteinase [Trypanosoma cruzi] >gi|2865360
            (AF023648) cysteine proteinase [Trypanosoma cruzi]
            Length = 135
	    Score = 708 (249.2 bits), Expect = 3.6e-69, P = 3.6e-69
  =>pdb|2AIM|  Cruzain Inhibited With Benzoyl-Arginine-Alanine- Fluoromethylketone
            Cysteine Protease, Trypanosoma Cruzi, Proteinase, Protease,
            Hydrolase Mol_id: 1; Molecule: Cruzain; Chain: Null; Fragment:
            Catalytic Domain; Synonym: Cruzipain; E...
            Length = 215
	    Score = 451 (158.8 bits), Expect = 1.4e-68, Sum P(2) = 1.4e-68
  =>gi|2865336 (AF023636) cysteine proteinase [Trypanosoma cruzi]
            Length = 135
	    Score = 701 (246.8 bits), Expect = 2.0e-68, P = 2.0e-68
  =>gi|2865362 (AF023649) cysteine proteinase [Trypanosoma cruzi]
            Length = 135
	    Score = 701 (246.8 bits), Expect = 2.0e-68, P = 2.0e-68
  =>gi|2865352 (AF023644) cysteine proteinase [Trypanosoma cruzi]
            Length = 135
	    Score = 698 (245.7 bits), Expect = 4.2e-68, P = 4.2e-68
  =>pdb|1AIM|  Cruzain Inhibited By Benzoyl-Tyrosine-Alanine- Fluoromethylketone
            Hydrolase, Cysteine Protease, Trypanosoma Cruzi, Fluoromethyl
            Ketone Mol_id: 1; Molecule: Cruzain; Chain: Null; Fragment:
            Catalytic Domain; Ec: 3.4.22.-; Engineered...
            Length = 215
	    Score = 445 (156.6 bits), Expect = 5.8e-68, Sum P(2) = 5.8e-68
  =>gi|2865324 (AF023630) cysteine proteinase [Trypanosoma cruzi] >gi|2865342
            (AF023639) cysteine proteinase [Trypanosoma cruzi] >gi|2865344
            (AF023640) cysteine proteinase [Trypanosoma cruzi] >gi|2865372
            (AF023654) cysteine proteinase [Trypanosoma cruzi]
            Length = 135
	    Score = 696 (245.0 bits), Expect = 6.8e-68, P = 6.8e-68
  =>gi|1136312 (U41444) cruzipain [Trypanosoma cruzi]
            Length = 383
	    Score = 440 (154.9 bits), Expect = 1.9e-67, Sum P(2) = 1.9e-67
  =>gi|2865310 (AF023623) cysteine proteinase [Trypanosoma cruzi] >gi|2865354
            (AF023645) cysteine proteinase [Trypanosoma cruzi] >gi|2865366
            (AF023651) cysteine proteinase [Trypanosoma cruzi] >gi|2865370
            (AF023653) cysteine proteinase [Trypanosoma cruzi]
            Length = 135
	    Score = 688 (242.2 bits), Expect = 4.8e-67, P = 4.8e-67
  =>gi|1019663 (L38512) rangelipain [Trypanosoma rangeli] >gi|1019666 (L38513)
            rangelipain [Trypanosoma rangeli] >gi|1019669 (L38514) rangelipain
            [Trypanosoma rangeli]
            Length = 204
	    Score = 677 (238.3 bits), Expect = 7.0e-66, P = 7.0e-66
  =>gi|2865328 (AF023632) cysteine proteinase [Trypanosoma cruzi]
            Length = 135
	    Score = 667 (234.8 bits), Expect = 8.1e-65, P = 8.1e-65
  =>pir||S37048 cysteine proteinase - Trypanosoma congolense
            Length = 447
	    Score = 490 (172.5 bits), Expect = 3.2e-61, Sum P(2) = 3.2e-61
  =>gi|1163075 (Z25813) cysteine proteinase [Trypanosoma congolense]
            Length = 442
	    Score = 490 (172.5 bits), Expect = 3.2e-61, Sum P(2) = 3.2e-61
  =>gi|408009 (L25130) cysteine protease [Trypanosoma congolense]
           Length = 444
	    Score = 467 (164.4 bits), Expect = 2.2e-58, Sum P(2) = 2.2e-58
  =>gi|2352467 (AF004593) cysteine protease [Leishmania donovani chagasi]
            Length = 471
	    Score = 432 (152.1 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
  =>gi|1848231 (U43706) cathepsin L-like protease [Leishmania major]
            Length = 443
	    Score = 423 (148.9 bits), Expect = 2.2e-50, Sum P(2) = 2.2e-50
  =>gi|162044 (M27305) cysteine protease [Trypanosoma cruzi]
           Length = 165
	    Score = 276 (97.2 bits), Expect = 9.4e-50, Sum P(2) = 9.4e-50
  =>pir||A44938 cysteine proteinase (EC 3.4.22.-) - Trypanosoma cruzi (fragment)
            Length = 183
	    Score = 275 (96.8 bits), Expect = 1.2e-49, Sum P(2) = 1.2e-49
  =>sp|P36400|LCPB_LEIME CYSTEINE PROTEINASE B PRECURSOR >gi|899313 (Z49962)
            LmCPb2.8 [Leishmania mexicana]
            Length = 443
	    Score = 382 (134.5 bits), Expect = 1.5e-47, Sum P(2) = 1.5e-47
  =>sp|Q05094|CYS2_LEIPI CYSTEINE PROTEINASE 2 PRECURSOR (AMASTIGOTE CYSTEINE
            PROTEINASE A-2) >pir||A48566 cysteine proteinase Lpcys2 -
            Leishmania pifanoi >gi|159298 (M97695) cysteine proteinase
            [Leishmania pifanoi]
            Length = 444
	    Score = 382 (134.5 bits), Expect = 2.5e-47, Sum P(2) = 2.5e-47
  =>gnl|PID|e1234836 (Y09958) cystein proteinase [Leishmania mexicana]
            Length = 443
	    Score = 373 (131.3 bits), Expect = 4.0e-47, Sum P(2) = 4.0e-47
  =>pir||S29245 cysteine proteinase (EC 3.4.22.-) precursor - Leishmania mexicana
            >gi|9542 (Z14061) cysteine proteinase [Leishmania mexicana]
            Length = 443
	    Score = 372 (131.0 bits), Expect = 1.7e-46, Sum P(2) = 1.7e-46
  =>gi|2352465 (AF004592) cysteine protease [Leishmania donovani chagasi]
            Length = 447
	    Score = 371 (130.6 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
  =>sp|P25775|LCPA_LEIME CYSTEINE PROTEINASE A PRECURSOR >pir||S25267 cysteine
            proteinase (EC 3.4.22.-) precursor - Leishmania mexicana >gi|9573
            (X62163) cysteine proteinase [Leishmania mexicana]
            Length = 354
	    Score = 302 (106.3 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
  =>sp|P35591|CYS1_LEIPI CYSTEINE PROTEINASE 1 PRECURSOR (AMASTIGOTE CYSTEINE
            PROTEINASE A-1) >gi|1220383 (L29168) cysteine proteinase
            [Leishmania pifanoi]
            Length = 354
	    Score = 302 (106.3 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
  =>gnl|PID|e286655 (Z49963) cysteine proteinase LmCPB1 [Leishmania mexicana]
            Length = 359
	    Score = 289 (101.7 bits), Expect = 3.4e-38, Sum P(2) = 3.4e-38
  =>gi|538255 (M99496) cysteine proteinase [Trypanosoma rangeli]
           Length = 166
	    Score = 249 (87.7 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
  =>gi|162042 (M27306) cysteine protease [Trypanosoma brucei]
           Length = 165
	    Score = 208 (73.2 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
  =>pir||B44938 cysteine proteinase (EC 3.4.22.-) - Trypanosoma brucei (fragment)
            Length = 166
	    Score = 199 (70.1 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
  =>pir||S57624 cysteine proteinase LmCPb19 - Leishmania mexicana (fragment)
            >gi|886681 (Z49965) LmCPb19 [Leishmania mexicana]
            Length = 136
	    Score = 298 (104.9 bits), Expect = 1.0e-25, P = 1.0e-25
  =>pir||B48566 cysteine proteinase Lpcys1 - Leishmania pifanoi
            Length = 149
	    Score = 143 (50.3 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
  =>pir||A53810 cathepsin L (EC 3.4.22.15) precursor - flesh fly (Sarcophaga
            peregrina) >gnl|PID|d1004486 (D16533) cathepsin L precursor
            [Sarcophaga peregrina]
            Length = 339
	    Score = 208 (73.2 bits), Expect = 6.3e-21, Sum P(2) = 6.3e-21
  =>pir||KHCHL cathepsin L (EC 3.4.22.15) - chicken
            Length = 218
	    Score = 201 (70.8 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
  =>bbs|85185 (S85184) Cyclic Protein-2, CP-2=cathepsin L proenzyme [rats, Sertoli
           cells, Peptide, 247 aa] [Rattus sp.]
           Length = 247
	    Score = 200 (70.4 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
  =>gnl|PID|e1217246 (Z92812) T03E6.7 [Caenorhabditis elegans]
            Length = 337
	    Score = 216 (76.0 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
  =>sp|P04988|CYS1_DICDI CYSTEINE PROTEINASE 1 PRECURSOR >pir||KHDO cysteine
            proteinase 1 (EC 3.4.22.-) precursor - slime mold (Dictyostelium
            discoideum) >gnl|PID|e273977 (X02407) cysteine proteinase I
            precursor [Dictyostelium discoideum]
            Length = 343
	    Score = 220 (77.4 bits), Expect = 4.8e-20, Sum P(2) = 4.8e-20
  =>prf||2104214A Cys protease [Drosophila melanogaster]
            Length = 255
	    Score = 187 (65.8 bits), Expect = 5.1e-20, Sum P(2) = 5.1e-20
  =>pir||S67481 cysteine proteinase CP1 - fruit fly (Drosophila melanogaster)
            (fragment)
            Length = 218
	    Score = 185 (65.1 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
  =>gnl|PID|d1032149 (AB010886) cathepsin [Cydia pomonella granulovirus]
            Length = 333
	    Score = 243 (85.5 bits), Expect = 1.2e-19, P = 1.2e-19
  =>gi|1272388 (U51913) cysteine protease [Spirometra mansonoides]
            Length = 216
	    Score = 205 (72.2 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
  =>gi|1698586 (U61296) cathepsin L [Oncorhynchus mykiss]
            Length = 196
	    Score = 191 (67.2 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
  =>gnl|PID|e1216912 (Y15901) putative cathepsin L [Xenopus laevis]
            Length = 231
	    Score = 196 (69.0 bits), Expect = 5.5e-19, Sum P(2) = 5.5e-19
  =>sp|Q10991|CATL_SHEEP CATHEPSIN L
            Length = 217
	    Score = 189 (66.5 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
  =>gnl|PID|d1007312 (D31970) cysteine proteinase-1 precursor [Drosophila
            melanogaster]
            Length = 254
	    Score = 185 (65.1 bits), Expect = 9.7e-19, Sum P(2) = 9.7e-19
  =>gi|1353726 (U42758) cysteine proteinase homolog [Naegleria fowleri]
            Length = 347
	    Score = 208 (73.2 bits), Expect = 9.9e-19, Sum P(2) = 9.9e-19
  =>sp|P13277|CYS1_HOMAM DIGESTIVE CYSTEINE PROTEINASE 1 PRECURSOR >pir||S19649
            cysteine proteinase (EC 3.4.22.-) precursor (clone LCP1) - American
            lobster >gi|11051 (X63567) cysteine proteinase preproenzyme
            [Homarus americanus] >prf||1801240A Cys protease 1 [Homarus
            americanus]
            Length = 322
	    Score = 199 (70.1 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
  =>pir||JC4848 cysteine proteinase (EC 3.4.22.-) - Douglas fir >gi|1208549
            (U41902) Pseudotzain [Pseudotsuga menziesii]
            Length = 454
	    Score = 217 (76.4 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
  =>gnl|PID|e307942 (Y09499) cathepsin S-like cysteine proteinase [Heterodera
            glycines]
            Length = 353
	    Score = 200 (70.4 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
  =>sp|O10364|CATV_NPVOP VIRAL CATHEPSIN (V-CATH) >gi|1911371 (U75930) cathepsin
            [Orgyia pseudotsugata nuclear polyhedrosis virus]
            Length = 324
	    Score = 224 (78.9 bits), Expect = 8.7e-18, Sum P(2) = 8.7e-18
  =>pir||JX0366 cysteine endopeptidase (EC 3.4.22.-) precursor - silkworm
            >bbs|165573 (S77508) cysteine proteinase, BCP {EC 3.4.22.-} [Bombyx
            mori=silkmoths, pupae, eggs, Peptide, 344 aa] [Bombyx mori]
            Length = 344
	    Score = 199 (70.1 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
  =>pir||I58002 cathepsin-related protein - rat (fragment) >gi|894096 (L14776)
            cathepsin-related protein [Rattus norvegicus]
            Length = 236
	    Score = 175 (61.6 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
  =>gi|2425066 (AF019147) cysteine proteinase Mir3 [Zea mays]
            Length = 480
	    Score = 219 (77.1 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
  =>pir||S47433 cathepsin L (EC 3.4.22.15) - Norway lobster >gi|530736 (X80990)
            cathepsin l [Nephrops norvegicus] >prf||2119193B cathepsin
            L-related Cys protease [Nephrops norvegicus]
            Length = 313
	    Score = 188 (66.2 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
  =>pir||S47432 cathepsin L (EC 3.4.22.15) - Norway lobster >gi|530734 (X80989)
            cathepsin l [Nephrops norvegicus] >prf||2119193A cathepsin
            L-related Cys protease [Nephrops norvegicus]
            Length = 324
	    Score = 201 (70.8 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
  =>sp|P06797|CATL_MOUSE CATHEPSIN L PRECURSOR (MAJOR EXCRETED PROTEIN) (MEP)
            >pir||KHMSL cathepsin L (EC 3.4.22.15) precursor - mouse >gi|53047
            (X06086) MEP precursor (AA -18 to 316) [Mus musculus] >gi|309186
            (J02583) preprocysteine proteinase [Mus musculus]
            Length = 334
	    Score = 201 (70.8 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
  =>gi|200501 (M20495) preprocathepsin L precursor [Mus musculus]
           Length = 334
	    Score = 201 (70.8 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
  =>pdb|1AEC|  Actinidin (E.C.3.4.22.14) Complex With The Inhibitor
            ([n-(L-3-Trans-Carboxyoxirane-2-Carbonyl)-L-Leucyl]-
            Amido(4-Guanido)butane) (E-64)
            Length = 218
	    Score = 175 (61.6 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
  =>pir||S02729 actinidain (EC 3.4.22.14) precursor (clone pAC.7) - kiwi fruit
            (fragment) >gi|15959 (X13139) actinidin precursor [Actinidia
            chinensis] >gi|166321 (M21336) actinidin precursor [Actinidia
            chinensis]
            Length = 184
	    Score = 175 (61.6 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
  =>sp|P07154|CATL_RAT CATHEPSIN L PRECURSOR (MAJOR EXCRETED PROTEIN) (MEP)
            (CYCLIC PROTEIN-2) (CP-2)
            Length = 334
	    Score = 200 (70.4 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
  =>pir||KHRTL cathepsin L (EC 3.4.22.15) precursor - rat
            Length = 334
	    Score = 200 (70.4 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
  =>sp|Q28944|CATL_PIG CATHEPSIN L PRECURSOR >pir||A58195 cathepsin L (EC
            3.4.22.15) precursor - pig >pir||S59916 cathepsin L (EC 3.4.22.15)
            precursor - pig >gnl|PID|d1007717 (D37917) porcine cathepsin L [Sus
            scrofa]
            Length = 334
	    Score = 193 (67.9 bits), Expect = 5.8e-17, Sum P(2) = 5.8e-17
  =>gi|1619903 (U71379) thiol protease isoform B [Glycine max]
            Length = 319
	    Score = 206 (72.5 bits), Expect = 7.5e-17, Sum P(2) = 7.5e-17
  =>sp|P25326|CATS_BOVIN CATHEPSIN S >pir||S15844 cathepsin S (EC 3.4.22.27) -
            bovine >bbs|112983 cathepsin S [cattle, spleen, Peptide Partial,
            217 aa] >prf||1714236A cathepsin S [Bos taurus]
            Length = 217
	    Score = 172 (60.5 bits), Expect = 7.8e-17, Sum P(2) = 7.8e-17
  =>gi|162815 (M95211) cathepsin S [Bos taurus] >gi|312895 (X62001) cathepsin S
           [Bos taurus]
           Length = 196
	    Score = 172 (60.5 bits), Expect = 7.8e-17, Sum P(2) = 7.8e-17
  =>gi|55888 (Y00697) prepro-cathepsin L [Rattus norvegicus]
          Length = 334
	    Score = 199 (70.1 bits), Expect = 7.8e-17, Sum P(2) = 7.8e-17
  =>gi|1658527 (U75652) cysteine proteinase 1 [Drosophila melanogaster]
            >gi|2305221 (AF012089) cysteine proteinase-1 [Drosophila
            melanogaster]
            Length = 341
	    Score = 187 (65.8 bits), Expect = 7.9e-17, Sum P(2) = 7.9e-17
  =>gi|1809288 (U62289) secreted cathepsin L 2 [Fasciola hepatica]
            Length = 326
	    Score = 203 (71.5 bits), Expect = 8.5e-17, Sum P(2) = 8.5e-17
  =>sp|P41715|CATV_NPVCF VIRAL CATHEPSIN (V-CATH) >pir||S62735 cathepsin -
            Choristoneura fumiferana nuclear polyhedrosis virus >gi|332509
            (M97906) cathepsin [Choristoneura fumiferana nuclear polyhedrosis
            virus]
            Length = 324
	    Score = 215 (75.7 bits), Expect = 9.1e-17, Sum P(2) = 9.1e-17
  =>gi|2351557 (U72030) cathepsin [Choristoneura fumiferana nucleopolyhedrovirus]
            Length = 324
	    Score = 215 (75.7 bits), Expect = 9.1e-17, Sum P(2) = 9.1e-17
  =>pdb|1ATK|  Crystal Structure Of The Cysteine Protease Human Cathepsin K In
            Complex With The Covalent Inhibitor E-64 Hydrolase, Sulfhydryl
            Proteinase Mol_id: 1; Molecule: Cathepsin K; Chain: Null; Ec:
            3.4.22.38; Engineered: Yes; Other_details... >pdb|1MEM|A Chain A,
            Crystal Structure Of Cathepsin K Complexed With A Potent Vinyl
            Sulfone Inhibitor Osteoporosis, Protease, Drug Design, Cysteine,
            Osteoclast, Complex (HydrolaseINHIBITOR) Mol_id: 1; Molecule:
            Cathepsin K; Chain: A; Synonym:...
            Length = 215
	    Score = 177 (62.3 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
  =>gi|11055 (X63569) cysteine proteinase preproenzyme [Homarus americanus]
          Length = 320
	    Score = 188 (66.2 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
  =>pir||S19651 cysteine proteinase (EC 3.4.22.-) precursor (clone LCP3) -
            American lobster (fragment)
            Length = 320
	    Score = 188 (66.2 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
  =>sp|P25784|CYS3_HOMAM DIGESTIVE CYSTEINE PROTEINASE 3 PRECURSOR
            Length = 321
	    Score = 188 (66.2 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
  =>prf||1801240C Cys protease 3 [Homarus americanus]
            Length = 321
	    Score = 188 (66.2 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
  =>sp|P25777|ORYB_ORYSA ORYZAIN BETA CHAIN PRECURSOR >pir||KHRZOB oryzain (EC
            3.4.22.-) beta precursor - rice >gnl|PID|d1015116 (D90407) oryzain
            beta precursor [Oryza sativa]
            Length = 471
	    Score = 209 (73.6 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
  =>pdb|2ACT|  Actinidin (Sulfhydryl Proteinase) (E.C. Number Not Assigned)
            Length = 220
	    Score = 175 (61.6 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
  =>sp|P25773|CATL_FELCA CATHEPSIN L (PROGESTERONE-DEPENDENT PROTEIN) (PDP)
            >pir||A41404 cathepsin L (EC 3.4.22.15) - cat (fragment) >gi|552346
            (M31652) progesterone-dependent protein [Felis catus]
            Length = 139
	    Score = 180 (63.4 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
  =>gnl|PID|e257697 (X99730) cathepsin l [Penaeus vannamei]
            Length = 328
	    Score = 188 (66.2 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
  =>sp|P25776|ORYA_ORYSA ORYZAIN ALPHA CHAIN PRECURSOR >pir||KHRZOA oryzain (EC
            3.4.22.-) alpha precursor - rice >gnl|PID|d1015115 (D90406) oryzain
            alpha precursor [Oryza sativa]
            Length = 458
	    Score = 211 (74.3 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
  =>pir||S55923 cysteine proteinase (EC 3.4.22.-) precursor - soybean >gi|479060
            (Z32795) cysteine proteinase [Glycine max] >prf||2111244A Cys
            protease [Glycine max]
            Length = 380
	    Score = 214 (75.3 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
  =>gi|537437 (U12637) cysteine proteinase [Hemerocallis sp.]
           Length = 359
	    Score = 191 (67.2 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
  =>gi|454890 (X77221) cysteine proteinase, putative [Trichomonas vaginalis]
           Length = 292
	    Score = 197 (69.3 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
  =>pir||S27044 papain-like protein - Autographa californica nuclear polyhedrosis
            virus >gnl|PID|e280904 (X70124) envelope glycoprotein [Autographa
            californica nuclear polyhedrosis virus]
            Length = 208
	    Score = 208 (73.2 bits), Expect = 7.1e-16, P = 7.1e-16
  =>gnl|PID|d1025357 (D82884) cysteine proteinase [Sitophilus zeamais]
            Length = 338
	    Score = 198 (69.7 bits), Expect = 8.0e-16, Sum P(2) = 8.0e-16
  =>gi|1173630 (U34747) cysteine proteinase [Phalaenopsis sp. 'hybrid SM9108']
            Length = 359
	    Score = 197 (69.3 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
  =>dbj||D38534_1 (D38534) FB1035 precursor [Ananas comosus]
            Length = 324
	    Score = 194 (68.3 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
  =>sp|P43234|CATO_HUMAN CATHEPSIN O PRECURSOR >pir||A55090 cathepsin O (EC
            3.4.-.-) precursor - human >gi|574804 (X77383) cathepsin O [Homo
            sapiens]
            Length = 321
	    Score = 217 (76.4 bits), Expect = 1.6e-15, P = 1.6e-15
  =>gnl|PID|e1228067 (Y13924) cathepsin L [Penaeus vannamei]
            Length = 325
	    Score = 180 (63.4 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
  =>pir||S53027 cathepsin L (EC 3.4.22.15) precursor - penaeid shrimp (Penaeus
            vanameii) (fragment) >gi|728637 (X85127) cathepsin l [Penaeus
            vannamei]
            Length = 326
	    Score = 180 (63.4 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
  =>sp|P43156|CYSP_HEMSP THIOL PROTEASE SEN102 PRECURSOR >pir||S36421 cysteine
            proteinase - Hemerocallis sp >pir||S57777 cysteine protease
            precursor - Hemerocallis x hybrida >gi|396568 (X74406)
            thiol-protease [Hemerocallis sp.]
            Length = 360
	    Score = 189 (66.5 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
  =>gnl|PID|d1022707 (D14059) bromelain [Ananas comosus]
            Length = 351
	    Score = 194 (68.3 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
  =>gnl|PID|d1010466 (D63670) cysteine proteinase [Spirometra erinacei]
            >gnl|PID|d1010467 (D63671) cysteine proteinase [Spirometra
            erinacei]
            Length = 336
	    Score = 202 (71.1 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
  =>gi|2253415 (AF007215) stress-induced cysteine proteinase [Lavatera
            thuringiaca]
            Length = 175
	    Score = 203 (71.5 bits), Expect = 2.6e-15, P = 2.6e-15
  =>sp|P25250|CYS2_HORVU CYSTEINE PROTEINASE EP-B 4 PRECURSOR >pir||JQ1110
            cysteine proteinase (EC 3.4.22.-) EP-B 4 precursor - barley
            >gi|1146118 (U19384) cysteine proteinase EPB2 precursor [Hordeum
            vulgare]
            Length = 373
	    Score = 190 (66.9 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
  =>gnl|PID|e354314 (Z99954) cysteine proteinase precursor [Phaseolus vulgaris]
            Length = 455
	    Score = 206 (72.5 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
  =>dbj||D38533_1 (D38533) FB22 precursor [Ananas comosus]
            Length = 340
	    Score = 193 (67.9 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
  =>prf||1801240B Cys protease 2 [Homarus americanus]
            Length = 323
	    Score = 180 (63.4 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
  =>gi|2315454 (AF016448) contains similarity to both a cystatin domain and a
            cysteine protease domain [Caenorhabditis elegans]
            Length = 498
	    Score = 204 (71.8 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
  =>gnl|PID|e354313 (Z99953) cysteine proteinase precursor [Phaseolus vulgaris]
            Length = 365
	    Score = 203 (71.5 bits), Expect = 7.5e-15, Sum P(2) = 7.5e-15
  =>gnl|PID|d1022788 (D14057) bromelain [Ananas comosus]
            Length = 312
	    Score = 194 (68.3 bits), Expect = 8.4e-15, Sum P(2) = 8.4e-15
  =>sp|P25782|CYS2_HOMAM DIGESTIVE CYSTEINE PROTEINASE 2 PRECURSOR >pir||S19650
            cysteine proteinase (EC 3.4.22.-) precursor (clone LCP2) - American
            lobster >gi|11053 (X63568) cysteine proteinase preproenzyme
            [Homarus americanus]
            Length = 323
	    Score = 180 (63.4 bits), Expect = 9.5e-15, Sum P(2) = 9.5e-15
  =>sp|P25251|CYS4_BRANA CYSTEINE PROTEINASE COT44 PRECURSOR >pir||JQ1121 cysteine
            proteinase homolog COT44 - rape
            Length = 328
	    Score = 194 (68.3 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
  =>bbs|112827 COT44=cysteine proteinase homolog [Brassica napus, seedling, rapid
            cycling base population CrGC5, Peptide, 328 aa]
            Length = 328
	    Score = 194 (68.3 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
  =>sp|P05993|PAP5_CARPA CYSTEINE PROTEINASE (CLONE PLBPC13) >pir||B26074 cysteine
            proteinase (EC 3.4.22.-) 13 - papaya (fragment) >gi|18086 (X03971)
            pot. cysteine proteinase [Carica papaya]
            Length = 96
	    Score = 197 (69.3 bits), Expect = 1.3e-14, P = 1.3e-14
  =>gnl|PID|e1248894 (AJ003137) CYP1 [Lycopersicon esculentum]
            Length = 466
	    Score = 198 (69.7 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
  =>pir||S41427 cysteine proteinase (EC 3.4.22.-) CP1 precursor - Trichomonas
            vaginalis >gi|452292 (X77218) cysteine proteinase, putative
            [Trichomonas vaginalis]
            Length = 309
	    Score = 195 (68.6 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
  =>gi|452258 (Z22765) cathepsin L-like protease [Fasciola hepatica]
           Length = 326
	    Score = 187 (65.8 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
  =>sp|P43297|RD21_ARATH CYSTEINE PROTEINASE RD21A PRECURSOR >pir||JN0719
            drought-inducible cysteine proteinase (EC 3.4.22.-) RD21A precursor
            - Arabidopsis thaliana >gnl|PID|d1002874 (D13043) thiol protease
            [Arabidopsis thaliana]
            Length = 462
	    Score = 200 (70.4 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
  =>gnl|PID|e307941 (Y09498) cathepsin L-like cysteine proteinase [Heterodera
            glycines]
            Length = 374
	    Score = 213 (75.0 bits), Expect = 1.6e-14, P = 1.6e-14
  =>gi|2944446 (AF050756) cysteine endopeptidase precursor [Ricinus communis]
            Length = 360
	    Score = 187 (65.8 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
  =>sp|P25249|CYS1_HORVU CYSTEINE PROTEINASE EP-B 1 PRECURSOR >pir||JQ1111
            cysteine proteinase (EC 3.4.22.-) EP-B 1 precursor - barley
            >gi|1146116 (U19359) cysteine proteinase EPB1 precursor [Hordeum
            vulgare]
            Length = 371
	    Score = 183 (64.4 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
  =>sp|P43295|A494_ARATH PROBABLE CYSTEINE PROTEINASE A494 PRECURSOR >pir||S46535
            probable cysteine proteinase (EC 3.4.22.-) (clone A1494) -
            Arabidopsis thaliana (fragment) >gi|516865 (X74359) putative thiol
            protease [Arabidopsis thaliana]
            Length = 313
	    Score = 201 (70.8 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
  =>gnl|PID|d1022706 (D14058) bromelain [Ananas comosus] >dbj||D38531_1 (D38531)
            FB31 precursor (FB13 precursor) [Ananas comosus]
            Length = 352
	    Score = 194 (68.3 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
  =>pir||S47434 cysteine proteinase - rice >gi|530335 (X80876) cysteine protease
            [Oryza sativa]
            Length = 378
	    Score = 179 (63.0 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
  =>sp|P25783|CATV_NPVAC VIRAL CATHEPSIN (V-CATH) >pir||S62736 cathepsin -
            Autographa californica nuclear polyhedrosis virus >gi|332491
            (M67451) viral cathepsin [Autographa californica nuclear
            polyhedrosis virus] >gi|559196 (L22858) cysteine proteinase
            [Autographa californica nuclear polyhedrosis virus]
            Length = 323
	    Score = 208 (73.2 bits), Expect = 2.9e-14, P = 2.9e-14
  =>sp|P25975|CATL_BOVIN CATHEPSIN L PRECURSOR >gnl|PID|e200700 (X91755) cathepsin
            L [Bos taurus]
            Length = 334
	    Score = 180 (63.4 bits), Expect = 3.2e-14, Sum P(2) = 3.2e-14
  =>pir||S57776 cysteine proteinase - clove pink (fragment) >gi|595986 (U17135)
            cysteine proteinase [Dianthus caryophyllus]
            Length = 427
	    Score = 193 (67.9 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
  =>gnl|PID|d1005193 (D21124) prepro NTP [Paragonimus westermani]
            Length = 245
	    Score = 193 (67.9 bits), Expect = 3.6e-14, P = 3.6e-14
  =>sp|P41721|CATV_NPVBM VIRAL CATHEPSIN (V-CATH) >gi|540066 (U12688) cysteine
            protease [Bombyx mori nuclear polyhedrosis virus]
            Length = 323
	    Score = 207 (72.9 bits), Expect = 3.8e-14, P = 3.8e-14
  =>gnl|PID|e1313617 (AJ009878) cysteine proteinase [Cicer arietinum]
            Length = 362
	    Score = 209 (73.6 bits), Expect = 4.2e-14, P = 4.2e-14
  =>gnl|PID|e1313694 (AJ007579) cysteine proteinase [Ribes nigrum]
            Length = 206
	    Score = 192 (67.6 bits), Expect = 4.6e-14, P = 4.6e-14
  =>gnl|PID|e349210 (Z99172) cysteine proteinase precursor [Vicia sativa]
            Length = 379
	    Score = 200 (70.4 bits), Expect = 5.0e-14, Sum P(2) = 5.0e-14
  =>pir||S60456 cysteine proteinase (EC 3.4.22.-), glucose starvation-induced -
            maize (fragment) >gi|559532 (X82185) cysteine proteinase [Zea mays]
            Length = 145
	    Score = 191 (67.2 bits), Expect = 6.0e-14, P = 6.0e-14
  =>gi|29708 (X07549) cathepsin H [Homo sapiens]
          Length = 248
	    Score = 177 (62.3 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
  =>gi|3063538 (AF052831) unknown [Trypanosoma cruzi]
            Length = 116
	    Score = 140 (49.3 bits), Expect = 9.4e-14, Sum P(2) = 9.4e-14
  =>gi|2425064 (AF019146) cysteine proteinase Mir2 [Zea mays]
            Length = 493
	    Score = 204 (71.8 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
  =>sp|Q10717|CYS2_MAIZE CYSTEINE PROTEINASE 2 PRECURSOR >pir||S59598 cysteine
            proteinase 2 precursor - maize >gnl|PID|d1008840 (D45403) cysteine
            proteinase [Zea mays]
            Length = 360
	    Score = 179 (63.0 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
  =>sp|P07711|CATL_HUMAN CATHEPSIN L PRECURSOR (MAJOR EXCRETED PROTEIN) (MEP)
            >pir||KHHUL cathepsin L (EC 3.4.22.15) precursor - human >gi|29715
            (X12451) pro-(cathepsin L) [Homo sapiens] >gi|190418 (M20496)
            preprocathepsin L precursor [Homo sapiens]
            Length = 333
	    Score = 182 (64.1 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
  =>pdb|1CJL|  Crystal Structure Of A Cysteine Protease Proform Propeptide,
            Inhibitor, Cysteine Protease, Hydrolase Mol_id: 1; Molecule:
            Procathepsin L; Chain: Null; Ec: 3.4.22.15; Mutation: F(78p)l,
            C25s, T110a, E176g, D178g
            Length = 312
	    Score = 184 (64.8 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
  =>sp|P25804|CYSP_PEA CYSTEINE PROTEINASE 15A PRECURSOR (TURGOR-RESPONSIVE
            PROTEIN 15A) >pir||S11862 cysteine proteinase homolog - garden pea
            >gi|20679 (X54358) 363 aa peptide [Pisum sativum]
            Length = 363
	    Score = 205 (72.2 bits), Expect = 1.3e-13, P = 1.3e-13
  =>gi|1199563 (J05560) 34 kDa maturing seed vacuolar thiol protease precursor
            [Glycine max]
            Length = 379
	    Score = 178 (62.7 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
  =>gnl|PID|d1026839 (AB013289) Bd 30K [Glycine max]
            Length = 379
	    Score = 178 (62.7 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
  =>gnl|PID|d1011831 (D76415) cysteine proteinase [Oryza sativa]
            Length = 368
	    Score = 179 (63.0 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
  =>pir||S41428 cysteine proteinase (EC 3.4.22.-) CP2 precursor - Trichomonas
            vaginalis >gi|452294 (X77219) cysteine proteinase, putative
            [Trichomonas vaginalis]
            Length = 314
	    Score = 193 (67.9 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
  =>gi|1223922 (U49445) Vigna radiata vicilin peptidohydrolase [Vigna radiata]
            Length = 362
	    Score = 175 (61.6 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
  =>sp|P05167|ALEU_HORVU THIOL PROTEASE ALEURAIN PRECURSOR >gi|19021 (X05167)
            aleurain [Hordeum vulgare]
            Length = 362
	    Score = 184 (64.8 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
  =>pir||TAGB actinidain (EC 3.4.22.14) precursor - kiwi fruit >gi|166317 (M38422)
           actinidin [Actinidia deliciosa]
           Length = 380
	    Score = 180 (63.4 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
  =>gi|2665820 (AF035755) thiol-(cysteine-)proteinase [Sarcocystis muris]
            Length = 168
	    Score = 126 (44.4 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
  =>sp|P22895|P34_SOYBN P34 PROBABLE THIOL PROTEASE PRECURSOR >pir||KHSYO4 oil
            bodies-associated protein P34 precursor - soybean
            Length = 379
	    Score = 177 (62.3 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
  =>gi|535600 (L33772) cathepsin [Fasciola hepatica]
           Length = 326
	    Score = 191 (67.2 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
  =>gnl|PID|e1288120 (Y14734) cathepsin L2 [Homo sapiens]
            Length = 334
	    Score = 189 (66.5 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
  =>gnl|PID|d1026849 (AB001928) cathepsin V [Homo sapiens] >gi|3228672 (AF070448)
            cathepsin U [Homo sapiens]
            Length = 334
	    Score = 189 (66.5 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
  =>sp|P43296|RD19_ARATH CYSTEINE PROTEINASE RD19A PRECURSOR >pir||JN0718
            drought-inducible cysteine proteinase (EC 3.4.22.-) RD19A precursor
            - Arabidopsis thaliana >gnl|PID|d1002873 (D13042) thiol protease
            [Arabidopsis thaliana]
            Length = 368
	    Score = 197 (69.3 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
  =>gnl|PID|d1025358 (D82885) cysteine proteinase [Sitophilus zeamais]
            Length = 331
	    Score = 179 (63.0 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
  =>sp|P80884|ANAN_ANACO ANANAIN
            Length = 216
	    Score = 185 (65.1 bits), Expect = 2.8e-13, P = 2.8e-13
  =>sp|P12412|CYSP_VIGMU VIGNAIN PRECURSOR (BEAN ENDOPEPTIDASE) (CYSTEINE
            PROTEINASE) (SULFHYDRYL-ENDOPEPTIDASE) (SH-EP) >pir||S12581
            cysteine proteinase (EC 3.4.22.-) - black gram >gi|22062 (X15732)
            sulfhydryl-pre-endopeptidase (AA -20 to 342) [Vigna mungo]
            >gi|22066 (X51900) sulfhydryl-endopeptidase [Vigna mungo]
            Length = 362
	    Score = 174 (61.3 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
  =>gi|2677828 (U93166) cysteine protease [Prunus armeniaca]
            Length = 358
	    Score = 179 (63.0 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
  =>gnl|PID|e258351 (X99936) cysteine protease [Zea mays]
            Length = 360
	    Score = 179 (63.0 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
  =>prf||1910332A Cys endopeptidase [Vigna mungo]
            Length = 362
	    Score = 174 (61.3 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
  =>sp|Q40143|CYS3_LYCES CYSTEINE PROTEINASE 3 PRECURSOR >pir||S66348
            senescence-associated cysteine proteinase precursor (clone SENU3) -
            tomato >gnl|PID|e105711 (Z48736) pre-pro-cysteine proteinase
            [Solanum lycopersicum]
            Length = 356
	    Score = 177 (62.3 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
  =>gi|1619905 (U71380) thiol protease isoform A [Glycine max]
            Length = 318
	    Score = 198 (69.7 bits), Expect = 4.7e-13, P = 4.7e-13
  =>pir||S16251 endopeptidase C1 - kidney bean >gnl|PID|e33857 (X56753)
            endopeptidase (EP-C1) [Phaseolus vulgaris]
            Length = 361
	    Score = 172 (60.5 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
  =>sp|P25803|CYSP_PHAVU VIGNAIN PRECURSOR (BEAN ENDOPEPTIDASE) (CYSTEINE
            PROTEINASE EP-C1) >gi|20994 (X63102) endopeptidase [Phaseolus
            vulgaris]
            Length = 362
	    Score = 172 (60.5 bits), Expect = 5.2e-13, Sum P(2) = 5.2e-13
  =>gi|1401242 (U59465) pre-pro-cysteine proteinase [Vicia faba]
            Length = 363
	    Score = 200 (70.4 bits), Expect = 5.2e-13, P = 5.2e-13
  =>gnl|PID|e324319 (Z97021) cysteine endopeptidase EP-A [Hordeum vulgare]
            Length = 365
	    Score = 183 (64.4 bits), Expect = 5.2e-13, Sum P(2) = 5.2e-13
  =>gnl|PID|e324318 (Z97023) cysteine endopeptidase EP-A [Hordeum vulgare]
            Length = 365
	    Score = 183 (64.4 bits), Expect = 5.2e-13, Sum P(2) = 5.2e-13
  =>pir||S42882 cysteine proteinase - spring vetch >pir||S51818 cysteine
            proteinase precursor - spring vetch >gi|457756 (Z30338) cysteine
            proteinase [Vicia sativa]
            Length = 358
	    Score = 199 (70.1 bits), Expect = 6.6e-13, P = 6.6e-13
  =>gi|945081 (U31094) P21 [Petunia hybrida]
           Length = 358
	    Score = 164 (57.7 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
  =>sp|P00785|ACTN_ACTCH ACTINIDAIN PRECURSOR (ACTINIDIN) >gi|15984 (X16466)
            precursor (AA 1-380) [Actinidia deliciosa]
            Length = 380
	    Score = 175 (61.6 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
  =>sp|P43235|CATK_HUMAN CATHEPSIN K PRECURSOR (CATHESPIN O) (CATHEPSIN X)
            (CATHEPSIN O2) >pir||JC2476 cathepsin K (EC 3.4.22.-) precursor -
            human >gi|562757 (X82153) Cathepsin O [Homo sapiens] >gi|606923
            (U13665) cathepsin O [Homo sapiens] >bbs|172248 (S79895) cathepsin
            O2 [human, spleen, Peptide, 329 aa] [Homo sapiens]
            Length = 329
	    Score = 177 (62.3 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
  =>gi|836934 (U20280) cathepsin X [Homo sapiens]
           Length = 329
	    Score = 177 (62.3 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
  =>gi|3236470 (AF070927) cathepsin K [Macaca fascicularis]
            Length = 329
	    Score = 177 (62.3 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
  =>gnl|PID|e1228068 (Y13925) cathepsin L2 [Penaeus vannamei]
            Length = 111
	    Score = 181 (63.7 bits), Expect = 7.9e-13, P = 7.9e-13
  =>pir||S47312 cysteine proteinase - spring vetch >pir||S51817 cysteine
            proteinase (EC 3.4.22.-) precursor - spring vetch >gi|535473
            (X75749) cysteine protease [Vicia sativa]
            Length = 368
	    Score = 175 (61.6 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
  =>gi|600111 (Z34895) cysteine proteinase [Vicia sativa]
           Length = 359
	    Score = 171 (60.2 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
  =>gnl|PID|d1025359 (D82886) cysteine proteinase [Sitophilus zeamais]
            Length = 331
	    Score = 175 (61.6 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
  =>gnl|PID|e354315 (Z99955) cysteine proteinase precursor [Phaseolus vulgaris]
            Length = 377
	    Score = 185 (65.1 bits), Expect = 9.5e-13, Sum P(2) = 9.5e-13
  =>gi|1256830 (U52970) cysteine endopeptidase 1 [Phaseolus vulgaris]
            >gnl|PID|e1264083 (AJ224766) cysteine protease [Phaseolus vulgaris]
            Length = 364
	    Score = 169 (59.5 bits), Expect = 9.7e-13, Sum P(2) = 9.7e-13
  =>gnl|PID|e354312 (Z99952) cysteine proteinase precursor [Phaseolus vulgaris]
            Length = 364
	    Score = 169 (59.5 bits), Expect = 9.7e-13, Sum P(2) = 9.7e-13
  =>gnl|PID|e353197 (Z99707) cysteine proteinase [Arabidopsis thaliana]
            Length = 332
	    Score = 185 (65.1 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
  =>gi|535454 (U13940) cysteine proteinase [Alnus glutinosa]
           Length = 340
	    Score = 177 (62.3 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
  =>gi|1527225 (U68221) cysteine protease [Brassica napus]
            Length = 85
	    Score = 179 (63.0 bits), Expect = 1.3e-12, P = 1.3e-12
  =>sp|P54640|CYS5_DICDI CYSTEINE PROTEINASE 5 PRECURSOR >gi|1222694 (L36205) CP5
            [Dictyostelium discoideum]
            Length = 344
	    Score = 108 (38.0 bits), Expect = 1.5e-12, Sum P(3) = 1.5e-12
  =>gi|2305208 (AF010306) cathepsin K [Rattus norvegicus]
            Length = 329
	    Score = 172 (60.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
  =>gnl|PID|e301030 (Y11003) putative pre-pro-cysteine proteinase [Nicotiana
            tabacum]
            Length = 106
	    Score = 178 (62.7 bits), Expect = 1.7e-12, P = 1.7e-12
  =>gi|1017831 (U37691) JTAP-1 [Gallus gallus]
            Length = 334
	    Score = 176 (62.0 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
  =>gi|1019664 (L38512) rangelipain [Trypanosoma rangeli]
            Length = 263
	    Score = 175 (61.6 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
  =>gnl|PID|e214679 (Z68291) cysteine protease [Pisum sativum]
            Length = 350
	    Score = 171 (60.2 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
  =>gi|1019670 (L38514) rangelipain [Trypanosoma rangeli]
            Length = 265
	    Score = 175 (61.6 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
  =>sp|P20721|CYSL_LYCES LOW-TEMPERATURE-INDUCED CYSTEINE PROTEINASE PRECURSOR
            >pir||JA0159 cysteine proteinase (EC 3.4.22.-) precursor - tomato
            (fragment) >gi|806314 (M21444) thiol protease [Lycopersicon
            esculentum]
            Length = 346
	    Score = 174 (61.3 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
  =>pir||KHBH aleurain (EC 3.4.22.-) precursor - barley
           Length = 361
	    Score = 179 (63.0 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
  =>pir||S02728 actinidain (EC 3.4.22.14) precursor (clone pAC.1) - kiwi fruit
            (fragment) >gi|15957 (X13013) actinidin precursor [Actinidia
            chinensis] >gi|166319 (M21335) actinidin precursor [Actinidia
            chinensis] >prf||1601514A actinidin [Actinidia chinensis]
            Length = 302
	    Score = 171 (60.2 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
  =>pir||S49451 cysteine proteinase - chickpea >gi|558563 (X82011) cysteine
            proteinase [Cicer arietinum]
            Length = 325
	    Score = 172 (60.5 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
  =>sp|Q10716|CYS1_MAIZE CYSTEINE PROTEINASE 1 PRECURSOR >pir||S59597 cysteine
            proteinase 1 precursor - maize >gnl|PID|d1008839 (D45402) cysteine
            proteinase [Zea mays]
            Length = 371
	    Score = 194 (68.3 bits), Expect = 3.0e-12, P = 3.0e-12
  =>bbs|148651 (S70380) cysteine protease [Fasciola=liver flukes, Peptide, 325 aa]
            [Fasciola] >gnl|PID|d1024648 (AB009306) cathepsin L [Fasciola
            hepatica]
            Length = 325
	    Score = 184 (64.8 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
  =>pir||S30150 probable cysteine proteinase precursor (clone CYP-8) - common
            tobacco >gi|19851 (Z13964) tobacco pre-pro-cysteine proteinase
            [Nicotiana tabacum]
            Length = 365
	    Score = 190 (66.9 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
  =>gi|1019667 (L38513) rangelipain [Trypanosoma rangeli]
            Length = 263
	    Score = 173 (60.9 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
  =>gnl|PID|e326978 (Z97340) cysteine proteinase [Arabidopsis thaliana]
            Length = 373
	    Score = 193 (67.9 bits), Expect = 4.0e-12, P = 4.0e-12
  =>sp|P43236|CATK_RABIT CATHEPSIN K PRECURSOR (OC-2 PROTEIN) >pir||A49868
            probable cysteine proteinase OC-2 precursor, osteoclast - rabbit
            >gnl|PID|d1003631 (D14036) OC-2 protein [Oryctolagus cuniculus]
            Length = 329
	    Score = 172 (60.5 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
  =>pir||S43991 cathepsin L-like proteinases - Liver fluke >gi|497700 (L33771)
            cathepsin [Fasciola hepatica]
            Length = 326
	    Score = 180 (63.4 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
  =>sp|P25778|ORYC_ORYSA ORYZAIN GAMMA CHAIN PRECURSOR >pir||KHRZOG oryzain (EC
            3.4.22.-) gamma precursor - rice >gnl|PID|d1015117 (D90408) oryzain
            gamma precursor [Oryza sativa]
            Length = 362
	    Score = 173 (60.9 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
  =>pir||S30149 probable cysteine proteinase precursor (clone CYP-7) - common
            tobacco >gi|19849 (Z13959) tobacco pre-pro-cysteine proteinase
            [Nicotiana tabacum]
            Length = 363
	    Score = 190 (66.9 bits), Expect = 8.1e-12, P = 8.1e-12
  =>gi|2731635 (U70537) pre-procathepsin L [Paragonimus westermani]
            Length = 325
	    Score = 188 (66.2 bits), Expect = 9.1e-12, P = 9.1e-12
  =>sp|P09668|CATH_HUMAN CATHEPSIN H PRECURSOR >pir||KHHUH cathepsin H (EC
            3.4.22.16) precursor - human >gi|29710 (X16832) preprocathepsin H
            (AA -22 to 314) [Homo sapiens]
            Length = 335
	    Score = 177 (62.3 bits), Expect = 9.3e-12, Sum P(2) = 9.3e-12
  =>pir||S24602 cysteine proteinase tpp (EC 3.4.22.-) - garden pea
            Length = 464
	    Score = 182 (64.1 bits), Expect = 9.8e-12, Sum P(2) = 9.8e-12
  =>gnl|PID|e49221 (X66061) thiolprotease [Pisum sativum]
            Length = 464
	    Score = 182 (64.1 bits), Expect = 9.8e-12, Sum P(2) = 9.8e-12
  =>gi|1644502 (U72746) cysteine proteinase [Dictyostelium discoideum]
            Length = 460
	    Score = 112 (39.4 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
  =>gnl|PID|e285283 (Y08321) cathepsin L [Danio rerio]
            Length = 336
	    Score = 188 (66.2 bits), Expect = 1.1e-11, P = 1.1e-11
  =>gnl|PID|e311259 (X91644) cysteine proteinase [Entamoeba histolytica]
            Length = 318
	    Score = 187 (65.8 bits), Expect = 1.1e-11, P = 1.1e-11
  =>gi|2746723 (AF038546) cathepsin S precursor [Mus musculus]
            Length = 340
	    Score = 168 (59.1 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
  =>gnl|PID|e1287860 (AL022604) cysteine proteinase - like protein [Arabidopsis
            thaliana]
            Length = 355
	    Score = 159 (56.0 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
  =>gi|1809286 (U62288) secreted cathepsin L 1 [Fasciola hepatica]
            Length = 326
	    Score = 181 (63.7 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
  =>gi|2961621 (AF051732) cathepsin S [Mus musculus]
            Length = 340
	    Score = 168 (59.1 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
  =>gi|1185457 (U38475) cathepsin L [Schistosoma japonicum]
            Length = 224
	    Score = 159 (56.0 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
  =>gnl|PID|e348870 (Z99173) cysteine proteinase precursor [Nicotiana tabacum]
            Length = 374
	    Score = 186 (65.5 bits), Expect = 2.6e-11, P = 2.6e-11
  =>sp|P04989|CYS2_DICDI CYSTEINE PROTEINASE 2 PRECURSOR (PRESTALK CATHEPSIN)
            >pir||KHDOP prestalk cathepsin (EC 3.4.22.-) precursor - slime mold
            (Dictyostelium discoideum) >gi|167860 (M16039) pst-cathepsin
            [Dictyostelium discoideum] >gnl|PID|e300605 (X03344) cysteine
            proteinase 2 [Dictyostelium discoideum] >prf||1304284A
            cathepsin,prestalk [Dictyostelium discoideum]
            Length = 376
	    Score = 104 (36.6 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
  =>sp|P15242|TES1_RAT TESTIN 1/2 PRECURSOR (CMB-22/CMB-23) >pir||I52525 testin I
            - rat >gi|577430 (U16858) testin [Rattus norvegicus]
            Length = 333
	    Score = 160 (56.3 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
  =>gi|452256 (Z22764) cathepsin L-like protease [Fasciola hepatica]
           Length = 166
	    Score = 124 (43.7 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
  =>gi|641905 (U19267) cysteine proteinase [Zinnia elegans]
           Length = 342
	    Score = 170 (59.8 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
  =>gi|1141743 (U13153) putative cysteine proteinase [Tritrichomonas foetus]
            Length = 315
	    Score = 181 (63.7 bits), Expect = 5.4e-11, P = 5.4e-11
  =>gnl|PID|e1179968 (AJ002477) Ananain precursor [Ananas comosus]
            Length = 345
	    Score = 182 (64.1 bits), Expect = 6.0e-11, P = 6.0e-11
  =>gi|2735659 (AF001169) preprocathepsin H [Sus scrofa]
            Length = 335
	    Score = 175 (61.6 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
  =>sp|P49935|CATH_MOUSE CATHEPSIN H PRECURSOR (CATHEPSIN B3) (CATHEPSIN BA)
            >gi|454101 (U06119) cathepsin H prepropeptide [Mus musculus]
            Length = 333
	    Score = 170 (59.8 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
  =>bbs|107806 (S39127) cathepsin S=cysteine proteinase [human, testis, Peptide,
            331 aa]
            Length = 331
	    Score = 180 (63.4 bits), Expect = 8.9e-11, P = 8.9e-11
  =>sp|P25774|CATS_HUMAN CATHEPSIN S PRECURSOR >pir||A42482 cathepsin S (EC
            3.4.22.27) - human >gi|179959 (M86553) cathepsin [Homo sapiens]
            >bbs|93443 (S93414) cathepsin S=elastinolytic cysteine protease
            [human, alveolar macrophages, Peptide, 331 aa] [Homo sapiens]
            Length = 331
	    Score = 180 (63.4 bits), Expect = 8.9e-11, P = 8.9e-11
  =>gi|179957 (M90696) cathepsin S [Homo sapiens]
           Length = 331
	    Score = 180 (63.4 bits), Expect = 8.9e-11, P = 8.9e-11
  =>gi|1141745 (U13154) putative cysteine proteinase [Tritrichomonas foetus]
            Length = 270
	    Score = 175 (61.6 bits), Expect = 1.2e-10, P = 1.2e-10
  =>gi|1644500 (U72745) cysteine proteinase [Dictyostelium discoideum]
            Length = 434
	    Score = 99 (34.8 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
  =>gnl|PID|e200708 (X91643) cysteine proteinase [Entamoeba dispar]
            Length = 305
	    Score = 160 (56.3 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
  =>pir||A47306 cysteine proteinase - Tetrahymena thermophila (SGC5) >gi|161754
            (L03212) cysteine protease [Tetrahymena thermophila]
            Length = 336
	    Score = 178 (62.7 bits), Expect = 1.6e-10, P = 1.6e-10
  =>gi|944916 (U30322) cysteine proteinase [Mesembryanthemum crystallinum]
           Length = 367
	    Score = 171 (60.2 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
  =>gi|463046 (L30111) cysteine proteinase [Cyprinus carpio]
           Length = 331
	    Score = 157 (55.3 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
  =>gi|203341 (M38135) cathepsin H [Rattus norvegicus]
           Length = 298
	    Score = 163 (57.4 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
  =>pir||S24988 cysteine proteinase (EC 3.4.22.-) precursor - tomato >gi|19195
            (Z14028) pre-pro-cysteine proteinase [Lycopersicon esculentum]
            Length = 361
	    Score = 177 (62.3 bits), Expect = 2.7e-10, P = 2.7e-10
  =>dbj||D38532_1 (D38532) FBSB precursor [Ananas comosus]
            Length = 356
	    Score = 176 (62.0 bits), Expect = 3.3e-10, P = 3.3e-10
  =>sp|P56202|LYMP_HUMAN LYMPHOPAIN PRECURSOR >gi|2582045 (AF013611) lymphopain
            [Homo sapiens] >gi|2582181 (AF015954) lymphopain [Homo sapiens]
            >gi|3033547 (AF055903) cathepsin W [Homo sapiens]
            Length = 376
	    Score = 134 (47.2 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
  =>sp|P00786|CATH_RAT CATHEPSIN H PRECURSOR (CATHEPSIN B3) (CATHEPSIN BA)
            >pir||KHRTH cathepsin H (EC 3.4.22.16) precursor - rat >gi|55886
            (Y00708) cathepsin H pre-pro-peptide [Rattus norvegicus] >gi|203343
            (M36320) cathepsin H pre-pro-peptide [Rattus norvegicus]
            >prf||1514114A cathepsin H [Rattus norvegicus]
            Length = 333
	    Score = 163 (57.4 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
  =>gi|1763663 (U83277) cysteine protease [Giardia intestinalis]
            Length = 299
	    Score = 173 (60.9 bits), Expect = 3.9e-10, P = 3.9e-10
  =>gnl|PID|e200707 (X91642) cysteine proteinase [Entamoeba histolytica]
            Length = 311
	    Score = 161 (56.7 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
  =>sp|P36184|ACP1_ENTHI CYSTEINE PROTEINASE ACP1 PRECURSOR >gnl|PID|e159396
            (X87214) cysteine proteinase [Entamoeba histolytica]
            Length = 308
	    Score = 173 (60.9 bits), Expect = 4.5e-10, P = 4.5e-10
  =>gi|3243102 (AF032117) silicatein alpha [Tethya aurantia]
            Length = 330
	    Score = 174 (61.3 bits), Expect = 4.5e-10, P = 4.5e-10
  =>pir||S68783 cathepsin L (EC 3.4.22.15) precursor - Paramecium tetraurelia
            (SGC5) >gnl|PID|e200701 (X91754) cathepsin L [Paramecium
            tetraurelia]
            Length = 314
	    Score = 173 (60.9 bits), Expect = 4.9e-10, P = 4.9e-10

>CcruzaQ_433 has the following protein neighbors:
Sequence,   
  =>gnl|PID|e49230 (X66285) HC1 ORF [Mus musculus]
            Length = 118
	    Score = 143 (50.3 bits), Expect = 1.2e-08, P = 1.2e-08
  =>gi|854065 (X83413) U88 [Human herpesvirus 6]
           Length = 413
	    Score = 148 (52.1 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
  =>sp|Q02722|Q300_MOUSE PROTEIN Q300 >pir||I48725 Q300 protein - mouse >gi|53861
            (X52164) Q300 protein (AA 1-77) [Mus musculus]
            Length = 77
	    Score = 114 (40.1 bits), Expect = 1.8e-05, P = 1.8e-05
  =>gi|862343 (L10908) Gcap1 gene product [Mus musculus] >prf||2022314A granule
           cell marker protein [Mus musculus] >prf||2022315A granule cell
           marker protein [Mus musculus]
           Length = 85
	    Score = 111 (39.1 bits), Expect = 3.8e-05, P = 3.8e-05
  =>gi|1840087 (U83280) 39 kDa antigen [Leishmania donovani]
            Length = 322
	    Score = 125 (44.0 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05

>CcruzaQ_568 has the following protein neighbors:
Sequence,   
  =>gi|453380 (U05588) hexose transporter [Trypanosoma cruzi]
           Length = 544
	    Score = 792 (278.8 bits), Expect = 4.0e-98, Sum P(2) = 4.0e-98
  =>gi|3098406 (AF039221) LmGT2 [Leishmania mexicana]
            Length = 566
	    Score = 508 (178.8 bits), Expect = 8.4e-63, Sum P(2) = 8.4e-63
  =>gi|3098408 (AF039222) LmGT3 [Leishmania mexicana]
            Length = 565
	    Score = 501 (176.4 bits), Expect = 4.6e-62, Sum P(2) = 4.6e-62
  =>sp|P13865|PRO1_LEIEN PROBABLE TRANSPORT PROTEIN (LTP) >pir||A33974 membrane
            transport protein homolog - Leishmania enriettii >gi|159368
            (M26229) transport protein (put.); putative [Leishmania enriettii]
            Length = 567
	    Score = 495 (174.2 bits), Expect = 8.4e-61, Sum P(2) = 8.4e-61
  =>sp|Q01441|GTR2_LEIDO MEMBRANE TRANSPORTER D2 >gi|159304 (M85073) D2
            transporter [Leishmania donovani]
            Length = 558
	    Score = 452 (159.1 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
  =>pir||B48442 membrane transport protein (clone D1.16.S) - Leishmania donovani
            Length = 627
	    Score = 452 (159.1 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
  =>pir||S72401 glucose transporter-like protein - Trypanosoma vivax >gi|1405419
            (L47540) glucose transporter protein [Trypanosoma vivax]
            Length = 543
	    Score = 434 (152.8 bits), Expect = 2.8e-52, Sum P(2) = 2.8e-52
  =>pir||S65462 glucose transport protein - Trypanosoma vivax
            Length = 543
	    Score = 434 (152.8 bits), Expect = 3.6e-52, Sum P(2) = 3.6e-52
  =>sp|Q09037|TH12_TRYBB GLUCOSE TRANSPORTER 1E >gi|312954 (X69091) Trypanosome
            Hexose Transporter (THT) [Trypanosoma (Trypanozoon) brucei]
            Length = 528
	    Score = 501 (176.4 bits), Expect = 3.1e-47, P = 3.1e-47
  =>sp|Q06222|TH2A_TRYBB GLUCOSE TRANSPORTER 2A >gi|312956 (X69091) Trypanosome
            Hexose Transporter (THT) [Trypanosoma (Trypanozoon) brucei]
            Length = 529
	    Score = 501 (176.4 bits), Expect = 3.1e-47, P = 3.1e-47
  =>pir||A45611 probable hexose transport protein - Trypanosoma brucei
            Length = 527
	    Score = 494 (173.9 bits), Expect = 1.7e-46, P = 1.7e-46
  =>gi|1196995 (M81386) hexose transporter [Trypanosoma brucei]
            Length = 527
	    Score = 494 (173.9 bits), Expect = 1.7e-46, P = 1.7e-46
  =>sp|Q06221|TH11_TRYBB GLUCOSE TRANSPORTER 1B/1C/1D/1F/2B >gi|312951 (X69091)
            Trypanosome Hexose Transporter (THT) [Trypanosoma (Trypanozoon)
            brucei] >gi|312952 (X69091) Trypanosome Hexose Transporter (THT)
            [Trypanosoma (Trypanozoon) brucei] >gi|312953 (X69091) Trypanosome
            Hexose Transporter (THT) [Trypanosoma (Trypanozoon) brucei]
            >gi|312955 (X69091) Trypanosome Hexose Transporter (THT)
            [Trypanosoma (Trypanozoon) brucei] >gi|312957 (X69091) Trypanosome
            Hexose Transporter (THT) [Trypanosoma (Trypanozoon) brucei]
            Length = 527
	    Score = 492 (173.2 bits), Expect = 2.8e-46, P = 2.8e-46
  =>pir||A48076 glucose transporter THT1 - Trypanosoma brucei
            Length = 527
	    Score = 492 (173.2 bits), Expect = 2.8e-46, P = 2.8e-46
  =>bbs|77927 (S77926) glucose transporter isoform 2, GLUT 2 [mice, embryo,
           Peptide Partial, 113 aa] [Mus sp.]
           Length = 113
	    Score = 108 (38.0 bits), Expect = 8.3e-05, P = 8.3e-05
  =>gi|3025762 (AF054835) glucose transporter type 2; GLUT-2 [Sus scrofa]
            Length = 120
	    Score = 101 (35.6 bits), Expect = 0.00048, P = 0.00048
  =>gi|535734 (L28134) glucose transporter type 2 [Rattus norvegicus]
           Length = 68
	    Score = 99 (34.8 bits), Expect = 0.00079, P = 0.00079
  =>pir||A44887 glucose transporter isoform 1, GLUT 1 - mouse (fragment)
            >bbs|77925 (S77924) glucose transporter isoform 1, GLUT 1 [mice,
            embryo, Peptide Partial, 107 aa] [Mus sp.]
            Length = 107
	    Score = 90 (31.7 bits), Expect = 0.0076, P = 0.0075
  =>gnl|PID|e353127 (Z99708) myo-inositol transport protein homolog [Arabidopsis
            thaliana]
            Length = 493
	    Score = 113 (39.8 bits), Expect = 0.0080, P = 0.0080
  =>gi|1778095 (U64903) putative sugar transporter; member of major facilitative
            superfamily; integral membrane protein [Beta vulgaris]
            Length = 545
	    Score = 110 (38.7 bits), Expect = 0.020, P = 0.020
  =>gi|1778093 (U64902) putative sugar transporter; member of major facilitative
            superfamily; integral membrane protein [Beta vulgaris]
            Length = 549
	    Score = 110 (38.7 bits), Expect = 0.020, P = 0.020
  =>sp|P12336|GTR2_RAT GLUCOSE TRANSPORTER TYPE 2, LIVER >pir||A31556 glucose
            transport protein, hepatic - rat >gi|204535 (J03145) glucose
            transporter [Rattus norvegicus]
            Length = 522
	    Score = 109 (38.4 bits), Expect = 0.024, P = 0.024
  =>pir||S68362 glucose transport protein type 2 - rat (fragment)
            Length = 522
	    Score = 109 (38.4 bits), Expect = 0.024, P = 0.024
  =>pir||S05319 glucose transport protein, hepatic - mouse >gi|51091 (X15684)
            glucose-transporter protein (AA 1-523) [Mus musculus]
            Length = 523
	    Score = 108 (38.0 bits), Expect = 0.031, P = 0.031
  =>sp|P14246|GTR2_MOUSE GLUCOSE TRANSPORTER TYPE 2, LIVER
            Length = 523
	    Score = 108 (38.0 bits), Expect = 0.031, P = 0.031
  =>gnl|PID|d1014610 (D89252) similar to Saccharomyces cerevisiae myo-inositol
            transporter 1, SWISS-PROT Accession Number P30605
            [Schizosaccharomyces pombe]
            Length = 376
	    Score = 104 (36.6 bits), Expect = 0.047, Sum P(2) = 0.046

>CcruzaQ_3355 has the following protein neighbors:
Sequence,   
  =>gi|501027 (U01849) ORF2 [Trypanosoma brucei]
           Length = 141
	    Score = 105 (37.0 bits), Expect = 0.00017, P = 0.00017
  =>pir||B21124 Bkm-like sex-determining region hypothetical protein CS314 - fruit
            fly (Drosophila melanogaster) (fragment)
            Length = 105
	    Score = 104 (36.6 bits), Expect = 0.00022, P = 0.00022

>CcruzaQ_2543 has the following protein neighbors:
Sequence,   
  =>sp|P26643|RLA1_TRYCR 60S ACIDIC RIBOSOMAL PROTEIN P1 >pir||R6UTP1 acidic
            ribosomal protein P1 - Trypanosoma cruzi >gi|10630 (X65025)
            ribosomal protein P1 [Trypanosoma cruzi]
            Length = 109
	    Score = 510 (179.5 bits), Expect = 3.5e-48, P = 3.5e-48
  =>sp|P17476|RLA1_SCHPO 60S ACIDIC RIBOSOMAL PROTEIN P1-ALPHA (A1) >pir||R6BY11
            acidic ribosomal protein P1.1 - fission yeast (Schizosaccharomyces
            pombe) >gi|173464 (M33137) ribosomal protein A1
            [Schizosaccharomyces pombe]
            Length = 109
	    Score = 245 (86.2 bits), Expect = 4.2e-20, P = 4.2e-20
  =>sp|P17477|RLA3_SCHPO 60S ACIDIC RIBOSOMAL PROTEIN P1-ALPHA (A3) >pir||R6BYP3
            acidic ribosomal protein P1.3 - fission yeast (Schizosaccharomyces
            pombe) >gi|173468 (M33139) ribosomal protein A3
            [Schizosaccharomyces pombe] >gnl|PID|e1256457 (AL022070) 60s acidic
            ribosomal protein p1-alpha [Schizosaccharomyces pombe]
            Length = 110
	    Score = 237 (83.4 bits), Expect = 3.0e-19, P = 3.0e-19
  =>sp|P05386|RLA1_HUMAN 60S ACIDIC RIBOSOMAL PROTEIN P1 >pir||R6HUP1 acidic
            ribosomal protein P1 - human >gi|190234 (M17886) acidic ribosomal
            phosphoprotein (P1) [Homo sapiens]
            Length = 114
	    Score = 235 (82.7 bits), Expect = 4.8e-19, P = 4.8e-19
  =>sp|P19944|RLA1_RAT 60S ACIDIC RIBOSOMAL PROTEIN P1 >pir||R5RT12 acidic
            ribosomal protein P1 - rat >gi|57710 (X15097) ribosomal
            phosphoprotein P1 (AA 1-114) [Rattus rattus] >prf||1718187B
            ribosomal protein P1 [Rattus rattus]
            Length = 114
	    Score = 235 (82.7 bits), Expect = 4.8e-19, P = 4.8e-19
  =>sp|P47955|RLA1_MOUSE 60S ACIDIC RIBOSOMAL PROTEIN P1 >gi|902558 (U29402)
            acidic ribosomal phosphoprotein P1 [Mus musculus]
            Length = 114
	    Score = 226 (79.6 bits), Expect = 4.3e-18, P = 4.3e-18
  =>sp|P91913|RLA1_CAEEL 60S ACIDIC RIBOSOMAL PROTEIN P1 >gi|1864155 (U89307)
            ribosomal protein P1 homolog [Caenorhabditis elegans]
            Length = 111
	    Score = 220 (77.4 bits), Expect = 2.0e-17, P = 2.0e-17
  =>sp|P50344|RLA1_CLAHE 60S ACIDIC RIBOSOMAL PROTEIN P1 (ALLERGEN CLA H 12) (CLA
            H XII) >gi|1143425 (X85180) ribosomal protein P1 [Cladosporium
            herbarum]
            Length = 110
	    Score = 218 (76.7 bits), Expect = 3.6e-17, P = 3.6e-17
  =>sp|P08570|RLA1_DROME 60S ACIDIC RIBOSOMAL PROTEIN P1 (RP21C) (ACIDIC RIBOSOMAL
            PROTEIN RPA2) >bbs|133185 (S62170) acidic ribosomal protein rpA2
            [Drosophila melanogaster, Kc 7E10(0) cells, Peptide, 112 aa]
            [Drosophila melanogaster]
            Length = 112
	    Score = 216 (76.0 bits), Expect = 6.3e-17, P = 6.3e-17
  =>sp|P18660|RLA1_CHICK 60S ACIDIC RIBOSOMAL PROTEIN P1 >pir||R5CH2E acidic
            ribosomal protein P1 - chicken >gi|63064 (X13876) ribosomal protein
            P1 (AA 1 - 114) [Gallus gallus]
            Length = 114
	    Score = 215 (75.7 bits), Expect = 8.2e-17, P = 8.2e-17
  =>sp|P02402|RLA1_ARTSA 60S ACIDIC RIBOSOMAL PROTEIN P1 (EL12'/ EL12'-P)
            >pir||R6SSP2 acidic ribosomal protein P1 - brine shrimp
            Length = 110
	    Score = 211 (74.3 bits), Expect = 2.4e-16, P = 2.4e-16
  =>gi|2431769 (U62752) acidic ribosomal protein P1a [Zea mays]
            Length = 109
	    Score = 211 (74.3 bits), Expect = 2.4e-16, P = 2.4e-16
  =>sp|P29763|RLA1_CHLRE 60S ACIDIC RIBOSOMAL PROTEIN P1 >pir||R6KM1C acidic
            ribosomal protein P1, cytosolic - Chlamydomonas reinhardtii
            >gi|18211 (X66411) ribosomal protein P1 [Chlamydomonas reinhardtii]
            Length = 107
	    Score = 207 (72.9 bits), Expect = 7.3e-16, P = 7.3e-16
  =>gnl|PID|e1173013 (AJ002733) ribosomal protein rpa5 [Schizosaccharomyces pombe]
            Length = 110
	    Score = 206 (72.5 bits), Expect = 9.4e-16, P = 9.4e-16
  =>sp|P52855|RLA1_MAIZE 60S ACIDIC RIBOSOMAL PROTEIN P1 (L12) >gi|1209701
            (U40147) ribosomal protein L12 [Zea mays]
            Length = 109
	    Score = 205 (72.2 bits), Expect = 1.2e-15, P = 1.2e-15
  =>gi|1906643 (U90830) ribosomal protein rpl-21 [Oscheius brevesophaga]
            Length = 112
	    Score = 205 (72.2 bits), Expect = 1.2e-15, P = 1.2e-15
  =>pir||R5FF2E acidic ribosomal protein P1 - fruit fly (Drosophila melanogaster)
            >gi|8476 (Y00504) rp21C [Drosophila melanogaster]
            Length = 112
	    Score = 204 (71.8 bits), Expect = 1.6e-15, P = 1.6e-15
  =>sp|P10622|RLA3_YEAST 60S ACIDIC RIBOSOMAL PROTEIN P1-BETA (L44') (L12EIIB)
            >pir||R8BY2B acidic ribosomal protein P1.e.B, cytosolic - yeast
            (Saccharomyces cerevisiae) >gi|171815 (M26507) L12eIIB protein
            [Saccharomyces cerevisiae] >gi|172400 (M19238) ribosomal protein
            L44' [Saccharomyces cerevisiae] >gnl|PID|e253234 (Z74178) ORF
            YDL130w [Saccharomyces cerevisiae]
            Length = 106
	    Score = 199 (70.1 bits), Expect = 6.2e-15, P = 6.2e-15
  =>gi|2252857 (AF013294) similar to acidic ribosomal protein p1 [Arabidopsis
            thaliana]
            Length = 110
	    Score = 198 (69.7 bits), Expect = 8.0e-15, P = 8.0e-15
  =>gi|5689 (X02633) ribosomal protein eL12' (clone pD3D13) (aa 1-107) [Artemia
         salina]
         Length = 107
	    Score = 195 (68.6 bits), Expect = 1.8e-14, P = 1.8e-14
  =>gi|2865615 (AF045249) acidic ribosomal protein P1 [Leishmania peruviana]
            Length = 107
	    Score = 190 (66.9 bits), Expect = 6.6e-14, P = 6.6e-14
  =>prf||0810208A protein eL12'/eL12'P [Artemia sp.]
            Length = 109
	    Score = 188 (66.2 bits), Expect = 1.1e-13, P = 1.1e-13
  =>sp|P26795|RLA3_TRYCR 60S ACIDIC RIBOSOMAL PROTEIN P2-B (P2B) >pir||R6UT2B
            acidic ribosomal protein P2 isoform P2b - Trypanosoma cruzi
            >gi|10634 (X65065) ribosomal P2-type protein [Trypanosoma cruzi]
            Length = 112
	    Score = 185 (65.1 bits), Expect = 2.4e-13, P = 2.4e-13
  =>sp|P22683|RLA2_DICDI 60S ACIDIC RIBOSOMAL PROTEIN P2 >pir||R6DOP2 acidic
            ribosomal protein P2 - slime mold (Dictyostelium discoideum)
            >gi|7341 (X56192) ribosomal acidic phosphoprotein P2 [Dictyostelium
            discoideum]
            Length = 106
	    Score = 179 (63.0 bits), Expect = 1.1e-12, P = 1.1e-12
  =>sp|P22684|RLA1_DICDI 60S ACIDIC RIBOSOMAL PROTEIN P1 >pir||R6DOP1 acidic
            ribosomal protein P1 - slime mold (Dictyostelium discoideum)
            >gi|7339 (X56193) ribosomal acidic phosphoprotein P1 [Dictyostelium
            discoideum]
            Length = 113
	    Score = 177 (62.3 bits), Expect = 1.9e-12, P = 1.9e-12
  =>sp|P49148|RLA1_ALTAL 60S ACIDIC RIBOSOMAL PROTEIN P1 (ALLERGEN ALT A 12) (ALT
            A XII) >gi|1006626 (X84216) ribosomal protein P1 [Alternaria
            alternata]
            Length = 110
	    Score = 176 (62.0 bits), Expect = 2.5e-12, P = 2.5e-12
  =>pir||A53221 acidic ribosomal protein P1 - hydromedusa (Polyorchis
            penicillatus) >prf||1709160A acidic ribosomal protein A1
            [Polyorchis penicillatus]
            Length = 111
	    Score = 173 (60.9 bits), Expect = 5.4e-12, P = 5.4e-12
  =>pir||R5BY2A acidic ribosomal protein P1.e.A, cytosolic - yeast (Saccharomyces
            cerevisiae) >gi|171813 (M26504) L12eIIA protein [Saccharomyces
            cerevisiae] >gnl|PID|e253019 (Z74129) ORF YDL081c [Saccharomyces
            cerevisiae]
            Length = 106
	    Score = 172 (60.5 bits), Expect = 6.9e-12, P = 6.9e-12
  =>sp|P42038|RLA3_CLAHE 60S ACIDIC RIBOSOMAL PROTEIN P2 (ALLERGEN CLA H 3) (CLA H
            III) >pir||S41866 ribosomal P2 protein - Cladosporium herberum
            >gi|452606 (X77253) ribosomal P2 protein [Cladosporium herbarum]
            Length = 111
	    Score = 166 (58.4 bits), Expect = 3.2e-11, P = 3.2e-11
  =>sp|P05318|RLA1_YEAST 60S ACIDIC RIBOSOMAL PROTEIN P1-ALPHA (A1) (L12EIIA)
            >gi|4373 (X06957) ribosomal protein A1 (AA 1-106) [Saccharomyces
            cerevisiae] >gnl|PID|d1014815 (D90072) acidic ribosomal protein A1
            [Saccharomyces cerevisiae] >gi|840877 (X13682) ribosomal protein A1
            [Saccharomyces cerevisiae]
            Length = 106
	    Score = 165 (58.1 bits), Expect = 4.2e-11, P = 4.2e-11
  =>gi|2665674 (AF034539) acidic ribosomal protein-1; ARP-1 [Leishmania donovani]
            Length = 105
	    Score = 165 (58.1 bits), Expect = 4.2e-11, P = 4.2e-11
  =>gi|2852437 (AF045020) acidic ribosomal P2 beta protein [Leishmania
            braziliensis]
            Length = 105
	    Score = 163 (57.4 bits), Expect = 7.0e-11, P = 7.0e-11
  =>sp|P51408|RLA2_TRYBB 60S ACIDIC RIBOSOMAL PROTEIN P2 >pir||S32038 acidic
            ribosomal protein P2 - Trypanosoma brucei >gi|11185 (Z21875) acidic
            ribosomal P2-type protein [Trypanosoma (Trypanozoon) brucei]
            Length = 107
	    Score = 162 (57.0 bits), Expect = 9.1e-11, P = 9.1e-11
  =>sp|P46252|RLA2_MAIZE 60S ACIDIC RIBOSOMAL PROTEIN P2 >pir||S54179 acidic
            ribosomal protein 60S - maize >pir||S65781 acidic ribosomal protein
            P2 - maize >gi|790508 (X86553) 60S acidic ribosomal protein [Zea
            mays]
            Length = 112
	    Score = 161 (56.7 bits), Expect = 1.2e-10, P = 1.2e-10
  =>sp|Q06382|RLA3_LEIIN 60S ACIDIC RIBOSOMAL PROTEIN P2-2 >pir||B48596 acidic
            ribosomal protein LiP' - Leishmania donovani infantum >gi|9522
            (X68016) acidic ribosomal protein LiP' [Leishmania infantum]
            >gi|9523 (X68016) acidic ribosomal protein LiP' [Leishmania
            infantum]
            Length = 111
	    Score = 160 (56.3 bits), Expect = 1.5e-10, P = 1.5e-10
  =>pir||S40106 gene TcP2beta protein - Trypanosoma cruzi >pir||S59912 acidic
            ribosomal protein P2-beta-H 1.8 - Trypanosoma cruzi >gnl|PID|e86246
            (X75033) TcP2beta gene product [Trypanosoma cruzi] >gi|436150
            (X75033) TcP2beta gene product [Trypanosoma cruzi]
            Length = 107
	    Score = 159 (56.0 bits), Expect = 2.0e-10, P = 2.0e-10
  =>gi|436146 (X75032) TcP2beta gene product [Trypanosoma cruzi]
           Length = 107
	    Score = 158 (55.6 bits), Expect = 2.5e-10, P = 2.5e-10
  =>pir||S59913 acidic ribosomal protein P2-beta-H1.3 - Trypanosoma cruzi
            Length = 107
	    Score = 158 (55.6 bits), Expect = 2.5e-10, P = 2.5e-10
  =>pir||S59919 acidic ribosomal protein P2.beta (X) - Trypanosoma cruzi >gi|10638
            (X69509) ribosomal protein P-JL5 [Trypanosoma cruzi]
            Length = 107
	    Score = 157 (55.3 bits), Expect = 3.3e-10, P = 3.3e-10
  =>sp|P02399|RLA2_ARTSA 60S ACIDIC RIBOSOMAL PROTEIN P2 (EL12) >pir||R8SS12
            ribosomal protein L12eI - brine shrimp
            Length = 111
	    Score = 156 (54.9 bits), Expect = 4.2e-10, P = 4.2e-10
  =>gi|899610 (U29383) acidic ribosomal protein P2 [Zea mays]
           Length = 112
	    Score = 156 (54.9 bits), Expect = 4.2e-10, P = 4.2e-10
  =>pir||S59918 acidic ribosomal protein P2.beta (H1.5) - Trypanosoma cruzi
            >gi|10640 (X69510) ribosomal P-JL5 protein [Trypanosoma cruzi]
            >gi|436138 (X75030) TcP2beta gene product [Trypanosoma cruzi]
            Length = 107
	    Score = 155 (54.6 bits), Expect = 5.4e-10, P = 5.4e-10
  =>sp|P23632|RLA2_TRYCR 60S ACIDIC RIBOSOMAL PROTEIN P2-A (P) (P-JL5) (L12E)
            >pir||R5UT2E acidic ribosomal protein P2 isoform P-JL5 -
            Trypanosoma cruzi >gi|10636 (X52323) ribosomal P protein (P-JL5)
            [Trypanosoma cruzi]
            Length = 107
	    Score = 154 (54.2 bits), Expect = 7.0e-10, P = 7.0e-10
  =>pir||S31435 acidic ribosomal protein P2 isoform P-JL5 - Trypanosoma cruzi
            (fragment) >gi|10644 (X69508) ribosomal protein P-JL5 [Trypanosoma
            cruzi]
            Length = 106
	    Score = 154 (54.2 bits), Expect = 7.0e-10, P = 7.0e-10
  =>gi|3098460 (AF040713) 60S ribosomal protein P2 [Cryptochiton stelleri]
            Length = 110
	    Score = 154 (54.2 bits), Expect = 7.0e-10, P = 7.0e-10
  =>pir||S59920 acidic ribosomal protein P2.beta (H6.4) - Trypanosoma cruzi
            >gi|436142 (X75031) TcP2beta gene product [Trypanosoma cruzi]
            Length = 107
	    Score = 153 (53.9 bits), Expect = 9.0e-10, P = 9.0e-10
  =>sp|P08094|RLA2_SCHPO 60S ACIDIC RIBOSOMAL PROTEIN P2-ALPHA (A2) (L40C) (L12EI)
            >pir||R6BY22 acidic ribosomal protein P2.2 - fission yeast
            (Schizosaccharomyces pombe) >gi|5065 (Y00466) ribosomal protein
            L40c (AA 1-110) [Schizosaccharomyces pombe] >gi|173466 (M33138)
            ribosomal protein A2 [Schizosaccharomyces pombe]
            Length = 110
	    Score = 151 (53.2 bits), Expect = 1.5e-09, P = 1.5e-09
  =>pir||A45641 acidic ribosomal protein P2 - Trypanosoma cruzi (fragment)
            >gi|162144 (M72710) acidic ribosomal protein [Trypanosoma cruzi]
            Length = 105
	    Score = 150 (52.8 bits), Expect = 1.9e-09, P = 1.9e-09
  =>sp|P42039|RLA4_CLAHE 60S ACIDIC RIBOSOMAL PROTEIN P2 (MINOR ALLERGEN CLA H 4)
            (CLA H IV) >pir||S43115 acidic ribosomal protein P2 - Cladosporium
            herberum >gi|467627 (X78223) minor allergen, ribosomal protein P2
            [Cladosporium herbarum]
            Length = 111
	    Score = 150 (52.8 bits), Expect = 1.9e-09, P = 1.9e-09
  =>sp|P27464|RLA1_POLPE 60S ACIDIC RIBOSOMAL PROTEIN P1 (A1) >gi|160769 (M64678)
            A1 acidic ribosomal protein [Polyorchis penicillatus]
            Length = 103
	    Score = 149 (52.5 bits), Expect = 2.5e-09, P = 2.5e-09
  =>gnl|PID|e1286962 (AJ002734) ribosomal protein rpa6 [Schizosaccharomyces pombe]
            Length = 110
	    Score = 149 (52.5 bits), Expect = 2.5e-09, P = 2.5e-09
  =>sp|O01725|RLA2_BRAFL 60S ACIDIC RIBOSOMAL PROTEIN P2 >gnl|PID|e299530 (Z83263)
            ribosomal protein P2 [Branchiostoma floridae]
            Length = 116
	    Score = 148 (52.1 bits), Expect = 3.2e-09, P = 3.2e-09
  =>sp|P42899|RLA2_BOVIN 60S ACIDIC RIBOSOMAL PROTEIN P2 >gi|600177 (U17836)
            acidic ribosomal protein P2 [Bos taurus]
            Length = 115
	    Score = 147 (51.7 bits), Expect = 4.1e-09, P = 4.1e-09
  =>sp|P05387|RLA2_HUMAN 60S ACIDIC RIBOSOMAL PROTEIN P2 >pir||R6HUP2 acidic
            ribosomal protein P2 - human >gi|190236 (M17887) acidic ribosomal
            phosphoprotein (P2) [Homo sapiens]
            Length = 115
	    Score = 146 (51.4 bits), Expect = 5.4e-09, P = 5.4e-09
  =>sp|P27055|RLA2_BABBO 60S ACIDIC RIBOSOMAL PROTEIN P2 (L12EI) >pir||S35440
            acidic ribosomal protein P2 - Babesia bovis >gi|155882 (M81359)
            ribosomal protein L12eI [Babesia bovis]
            Length = 112
	    Score = 145 (51.0 bits), Expect = 6.9e-09, P = 6.9e-09
  =>sp|P02401|RLA2_RAT 60S ACIDIC RIBOSOMAL PROTEIN P2 >pir||R6RTP2 acidic
            ribosomal protein P2 - rat >gi|57676 (X55153) ribosomal protein P2
            [Rattus rattus] >gi|57712 (X15098) ribosomal phosphoprotein P2 (AA
            1-115) [Rattus rattus] >prf||1718187C ribosomal protein P2 [Rattus
            rattus]
            Length = 115
	    Score = 144 (50.7 bits), Expect = 8.9e-09, P = 8.9e-09
  =>gi|2649066 (AE000999) LSU ribosomal protein L12A (rpl12A) [Archaeoglobus
            fulgidus]
            Length = 106
	    Score = 144 (50.7 bits), Expect = 8.9e-09, P = 8.9e-09
  =>sp|P05319|RLA2_YEAST 60S ACIDIC RIBOSOMAL PROTEIN P2-ALPHA (A2) (L44) (L12EIB)
            >pir||R5BYIB acidic ribosomal protein P2.e.A, cytosolic - yeast
            (Saccharomyces cerevisiae) >gi|4375 (X06958) ribosomal protein A2
            (AA 1-106) [Saccharomyces cerevisiae] >gi|171817 (M26503) L12eIB
            protein [Saccharomyces cerevisiae] >gi|172396 (J03760) ribosomal
            protein L44 [Saccharomyces cerevisiae] >gnl|PID|e251854 (Z74781)
            ORF YOL039w [Saccharomyces cerevisiae]
            Length = 106
	    Score = 143 (50.3 bits), Expect = 1.1e-08, P = 1.1e-08
  =>sp|P42037|RLA2_ALTAL 60S ACIDIC RIBOSOMAL PROTEIN P2 (MINOR ALLERGEN ALT A 6)
            (ALT A VI) >pir||S43109 acidic ribosomal protein P2 - Alternaria
            alternata >gi|467617 (X78222) minor allergen, ribosomal protein
            [Alternaria alternata]
            Length = 113
	    Score = 142 (50.0 bits), Expect = 1.5e-08, P = 1.5e-08
  =>gi|1850540 (U87806) ribosomal P2 phosphoprotein [Alternaria alternata]
            Length = 113
	    Score = 142 (50.0 bits), Expect = 1.5e-08, P = 1.5e-08
  =>sp|Q06383|RLA2_LEIIN 60S ACIDIC RIBOSOMAL PROTEIN P2-1 >pir||A48596 acidic
            ribosomal protein LiP - Leishmania donovani infantum >gi|9519
            (X68015) acidic ribosomal protein LiP [Leishmania infantum]
            >gi|9520 (X68015) acidic ribosomal protein LiP [Leishmania
            infantum]
            Length = 106
	    Score = 141 (49.6 bits), Expect = 1.9e-08, P = 1.9e-08
  =>pir||S25631 acidic ribosomal protein P2 isoform P2a-RA - Trypanosoma cruzi
            >gi|10632 (X68310) TcP2a-RA [Trypanosoma cruzi]
            Length = 106
	    Score = 141 (49.6 bits), Expect = 1.9e-08, P = 1.9e-08
  =>gi|5687 (X02632) ribosomal protein eL12 (clone pD10D3) (aa 1-108) [Artemia
         salina]
         Length = 108
	    Score = 140 (49.3 bits), Expect = 2.5e-08, P = 2.5e-08
  =>gi|972209 (F14703) 60S acidic ribosomal protein P2 [Sus scrofa]
           Length = 115
	    Score = 136 (47.9 bits), Expect = 6.7e-08, P = 6.7e-08
  =>sp|P15772|RL12_HALMA 50S RIBOSOMAL PROTEIN L12 ('A' TYPE) (HMAL12)
            >pir||R5HS12 ribosomal protein L12 - Haloarcula marismortui
            >gi|43606 (X51430) L12 ribosomal protein (AA 1-115) [Haloarcula
            marismortui]
            Length = 115
	    Score = 130 (45.8 bits), Expect = 3.1e-07, P = 3.1e-07
  =>sp|P41099|RLA2_PARAR 60S ACIDIC RIBOSOMAL PROTEIN P2 >gi|551267 (X78213) 60s
            acidic ribosomal protein P2 [Parthenium argentatum]
            Length = 114
	    Score = 130 (45.8 bits), Expect = 3.1e-07, P = 3.1e-07
  =>sp|P02400|RLA4_YEAST 60S ACIDIC RIBOSOMAL PROTEIN P2-BETA (L45) (YL44C) (YPA1)
            (L12EIA) >pir||R5BYA1 acidic ribosomal protein P2.e.B, cytosolic -
            yeast (Saccharomyces cerevisiae) >gi|171811 (M26505) L12eIA protein
            [Saccharomyces cerevisiae] >gi|172398 (J03761) ribosomal protein
            L45 [Saccharomyces cerevisiae] >gi|849203 (U28373) Rpl45p: 60S
            acidic ribosomal protein P2-beta (L45; YL44C; YPA1; L12EIA) (Swiss
            Prot. accession number P02400) [Saccharomyces cerevisiae]
            >gi|927315 (U32274) Rpl45p: 60S acidic ribosomal protein L45;
            YDR382W; CAI: 0.76 [Saccharomyces cerevisiae]
            Length = 110
	    Score = 128 (45.1 bits), Expect = 5.1e-07, P = 5.1e-07
  =>sp|P05768|RL12_HALHA 50S RIBOSOMAL PROTEIN L12 ('A' TYPE) (HL20) >pir||R5HS2H
            ribosomal protein L12 - Halobacterium halobium >pir||R5HS2C
            ribosomal protein L12 - Halobacterium cutirubrum >gi|43455 (X15078)
            L12e ribosomal protein [Halobacterium cutirubrum] >gi|43535
            (X13008) ribosomal A protein (AA 1-114) [Halobacterium halobium]
            >gi|43548 (X06736) ribosomal protein (AA 1-114) [Halobacterium
            halobium] >prf||1403261A ribosomal A protein [Halobacterium
            halobium]
            Length = 114
	    Score = 127 (44.7 bits), Expect = 6.5e-07, P = 6.5e-07
  =>gi|2431771 (U62753) acidic ribosomal protein P2b [Zea mays]
            Length = 113
	    Score = 126 (44.4 bits), Expect = 8.4e-07, P = 8.4e-07
  =>sp|P17478|RLA4_SCHPO 60S ACIDIC RIBOSOMAL PROTEIN P2-BETA (A4) >pir||R6BY24
            acidic ribosomal protein P2.4 - fission yeast (Schizosaccharomyces
            pombe) >gi|173470 (M33142) ribosomal protein A4
            [Schizosaccharomyces pombe]
            Length = 110
	    Score = 125 (44.0 bits), Expect = 1.1e-06, P = 1.1e-06
  =>sp|P54048|RL12_METJA 50S RIBOSOMAL PROTEIN L12 ('A' TYPE) >pir||D64363
            ribosomal protein L12 - Methanococcus jannaschii >gi|1499306
            (U67500) LSU ribosomal protein L12A (P1) [Methanococcus jannaschii]
            Length = 102
	    Score = 125 (44.0 bits), Expect = 1.1e-06, P = 1.1e-06
  =>gi|1943794 (U97194) strong similarity to 60S acidic ribosomal protein P2
            [Caenorhabditis elegans]
            Length = 136
	    Score = 90 (31.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
  =>gi|2895649 (AF044919) ribosomal protein L12 [Methanococcus
            thermolithotrophicus]
            Length = 101
	    Score = 124 (43.7 bits), Expect = 1.4e-06, P = 1.4e-06
  =>sp|P05389|RLA2_DROME 60S ACIDIC RIBOSOMAL PROTEIN P2 (ACIDIC RIBOSOMAL PROTEIN
            RPA1) >pir||R6FFP2 acidic ribosomal protein P2 - fruit fly
            (Drosophila melanogaster) >gi|8480 (X05016) r-protein [Drosophila
            melanogaster]
            Length = 113
	    Score = 123 (43.3 bits), Expect = 1.8e-06, P = 1.8e-06
  =>gi|8482 (X05466) r protein (AA 1-113) [Drosophila melanogaster]
         Length = 113
	    Score = 123 (43.3 bits), Expect = 1.8e-06, P = 1.8e-06
  =>gi|2431767 (U62751) acidic ribosomal protein P3a [Zea mays]
            Length = 120
	    Score = 123 (43.3 bits), Expect = 1.8e-06, P = 1.8e-06
  =>gnl|PID|d1027088 (AB009464) 111aa long hypothetical 50S ribosomal protein L12
            [Pyrococcus horikoshii] >gnl|PID|d1032068 (AP000007) 111aa long
            hypothetical 50S ribosomal protein L12 [Pyrococcus horikoshii]
            Length = 111
	    Score = 123 (43.3 bits), Expect = 1.8e-06, P = 1.8e-06
  =>sp|Q93572|RLA0_CAEEL 60S ACIDIC RIBOSOMAL PROTEIN P0 >gnl|PID|e264281 (Z79754)
            F25H2.10 [Caenorhabditis elegans]
            Length = 312
	    Score = 141 (49.6 bits), Expect = 2.3e-06, P = 2.3e-06
  =>sp|P41197|RL12_HALVO 50S RIBOSOMAL PROTEIN L12 ('A' TYPE) >pir||S34137
            ribosomal protein L12 - Haloferax volcanii >gi|313019 (X58924)
            ribosomal protein L12e [Haloferax volcanii]
            Length = 113
	    Score = 119 (41.9 bits), Expect = 4.9e-06, P = 4.9e-06
  =>sp|P50879|RLA2_TAESO 60S ACIDIC RIBOSOMAL PROTEIN P2 >pir||JC4622 ribosomal
            phosphoprotein P2 - pork tapeworm >gi|662268 (L39653) acidic
            ribosomal phosphoprotein [Taenia solium]
            Length = 121
	    Score = 118 (41.5 bits), Expect = 6.3e-06, P = 6.3e-06
  =>gi|2622812 (AE000926) ribosomal protein Lp1 [Methanobacterium
            thermoautotrophicum]
            Length = 101
	    Score = 118 (41.5 bits), Expect = 6.3e-06, P = 6.3e-06
  =>sp|P14869|RLA0_MOUSE 60S ACIDIC RIBOSOMAL PROTEIN P0 (L10E) >pir||R5MS10
            acidic ribosomal protein P0 - mouse >gi|50026 (X15267) PO protein
            [Mus musculus]
            Length = 317
	    Score = 135 (47.5 bits), Expect = 1.2e-05, P = 1.2e-05
  =>sp|P10623|RL12_METVA 50S RIBOSOMAL PROTEIN L12 ('A' TYPE) >pir||R6MXL2
            ribosomal protein L12 - Methanococcus vannielii >gi|150068 (J03187)
            ribosomal protein L12 [Methanococcus vannielii]
            Length = 99
	    Score = 115 (40.5 bits), Expect = 1.3e-05, P = 1.3e-05
  =>sp|O00806|RLA2_PLAFA 60S ACIDIC RIBOSOMAL PROTEIN P2 >gi|1916071 (U78753)
            ribosomal P2 phosphoprotein [Plasmodium falciparum]
            Length = 112
	    Score = 114 (40.1 bits), Expect = 1.7e-05, P = 1.7e-05
  =>sp|P50345|RLA0_LUPLU 60S ACIDIC RIBOSOMAL PROTEIN P0 >gi|1143507 (X93587) P0
            ribosomal protein [Lupinus luteus]
            Length = 322
	    Score = 132 (46.5 bits), Expect = 2.7e-05, P = 2.7e-05
  =>prf||1406252A ribosomal A protein SacL12 [Sulfolobus acidocaldarius]
            Length = 106
	    Score = 109 (38.4 bits), Expect = 6.1e-05, P = 6.1e-05
  =>sp|P19945|RLA0_RAT 60S ACIDIC RIBOSOMAL PROTEIN P0 (L10E) >gi|450370 (Z29530)
            acidic ribosomal protein P0 [Rattus norvegicus]
            Length = 317
	    Score = 127 (44.7 bits), Expect = 9.4e-05, P = 9.4e-05
  =>sp|P05388|RLA0_HUMAN 60S ACIDIC RIBOSOMAL PROTEIN P0 (L10E) >pir||R5HUP0
            acidic ribosomal protein P0 - human >gi|190232 (M17885) acidic
            ribosomal phosphoprotein (P0) [Homo sapiens] >gi|2935618 (AC004263)
            60S ACIDIC RIBOSOMAL PROTEIN; match to P05388 (PID:g133041) [Homo
            sapiens]
            Length = 317
	    Score = 124 (43.7 bits), Expect = 0.00021, P = 0.00021
  =>gi|1814430 (U85262) ribosomal protein L12 [Sulfolobus solfataricus]
            Length = 106
	    Score = 104 (36.6 bits), Expect = 0.00021, P = 0.00021
  =>sp|P35022|RL12_SULSO 50S RIBOSOMAL PROTEIN L12 ('A' TYPE) >pir||S53651
            ribosomal protein L12 - Sulfolobus acidocaldarius >gi|47503
            (X59038) ribosomal protein L12 [Sulfolobus solfataricus]
            Length = 105
	    Score = 101 (35.6 bits), Expect = 0.00045, P = 0.00045
  =>sp|P05317|RLA0_YEAST 60S ACIDIC RIBOSOMAL PROTEIN P0 (L10E) >gi|4371 (X06959)
            ribosomal protein A0 (AA 1-312) [Saccharomyces cerevisiae]
            >gnl|PID|d1000869 (D00529) acidic ribosomal protein A0
            [Saccharomyces cerevisiae]
            Length = 312
	    Score = 120 (42.2 bits), Expect = 0.00057, P = 0.00057
  =>pir||R5BY0E acidic ribosomal protein P0.e, cytosolic - yeast (Saccharomyces
            cerevisiae) >gi|171806 (M37326) ribosomal protein L10e
            [Saccharomyces cerevisiae] >gi|171808 (M26506) L10e protein
            [Saccharomyces cerevisiae] >gi|171809 (M26506) L10e protein
            [Saccharomyces cerevisiae] >gi|609387 (U19028) Rpl10ep
            [Saccharomyces cerevisiae]
            Length = 312
	    Score = 120 (42.2 bits), Expect = 0.00057, P = 0.00057
  =>sp|P90703|RLA2_BRUMA 60S ACIDIC RIBOSOMAL PROTEIN P2 >gi|1813692 (U80977)
            ribosomal protein P2 [Brugia malayi]
            Length = 114
	    Score = 100 (35.2 bits), Expect = 0.00058, P = 0.00058
  =>pir||R5RT10 acidic ribosomal protein P0 - rat >gi|57708 (X15096) ribosomal
            phosphoprotein P0 (AA 1-316) [Rattus rattus] >prf||1718187A
            ribosomal protein P0 [Rattus rattus]
            Length = 316
	    Score = 119 (41.9 bits), Expect = 0.00076, P = 0.00076
  =>gi|2293577 (AF013214) acidic ribosomal phosphoprotein PO [Bos taurus]
            Length = 302
	    Score = 118 (41.5 bits), Expect = 0.00090, P = 0.00090
  =>sp|Q95140|RLA0_BOVIN 60S ACIDIC RIBOSOMAL PROTEIN P0 (L10E)
            Length = 309
	    Score = 118 (41.5 bits), Expect = 0.00095, P = 0.00095
  =>sp|P08055|RL12_SULAC 50S RIBOSOMAL PROTEIN L12 ('A' TYPE) >pir||R5UC12
            ribosomal protein L12 - Sulfolobus acidocaldarius
            Length = 105
	    Score = 97 (34.1 bits), Expect = 0.0012, P = 0.0012
  =>gnl|PID|d1033190 (AB016272) 60S acidic ribosomal protein PO [Chrysophrys
            major]
            Length = 89
	    Score = 96 (33.8 bits), Expect = 0.0016, P = 0.0016
  =>sp|P47826|RLA0_CHICK 60S ACIDIC RIBOSOMAL PROTEIN P0 (L10E) >pir||I50151
            acidic ribosomal phosphoprotein - chicken >gi|453474 (L28704)
            acidic ribosomal phosphoprotein [Gallus gallus]
            Length = 316
	    Score = 114 (40.1 bits), Expect = 0.0028, P = 0.0028
  =>sp|P19889|RLA0_DROME 60S ACIDIC RIBOSOMAL PROTEIN P0 (DEOXYRIBONUCLEASE
            (APURINIC OR APYRIMIDINIC)) (APURINIC- APYRIMIDINIC ENDONUCLEASE)
            >pir||R5FFP0 acidic ribosomal protein P0 - fruit fly (Drosophila
            melanogaster) >gi|576817 (M25772) DNA repair protein [Drosophila
            melanogaster]
            Length = 317
	    Score = 114 (40.1 bits), Expect = 0.0028, P = 0.0028
  =>gi|11027 (X62144) P0 ribosomal protein (carboxy terminal) [Trypanosoma cruzi]
          Length = 78
	    Score = 93 (32.7 bits), Expect = 0.0034, P = 0.0034
  =>sp|P50346|RLA0_SOYBN 60S ACIDIC RIBOSOMAL PROTEIN P0 >gi|1196897 (L46848)
            acidic ribosomal protein P0 [Glycine max]
            Length = 320
	    Score = 113 (39.8 bits), Expect = 0.0037, P = 0.0037
  =>gi|972205 (F14700) 60S ribosomal protein P1 [Sus scrofa]
           Length = 64
	    Score = 91 (32.0 bits), Expect = 0.0056, P = 0.0055
  =>sp|P51407|RLA2_ARATH 60S ACIDIC RIBOSOMAL PROTEIN P2 >gnl|PID|e86647 (Z26542)
            Ribosomal protein P2, 60S [Arabidopsis thaliana]
            Length = 78
	    Score = 91 (32.0 bits), Expect = 0.0056, P = 0.0055
  =>gi|1480863 (U63332) super cysteine rich protein; SCRP [Homo sapiens]
            Length = 46
	    Score = 90 (31.7 bits), Expect = 0.0071, P = 0.0071
  =>sp|P02734|ANP4_PSEAM ANTIFREEZE PEPTIDE 4 PRECURSOR >gi|213584 (J00930)
            anti-freeze protein [Pseudopleuronectes americanus]
            Length = 85
	    Score = 80 (28.2 bits), Expect = 0.087, P = 0.083
  =>gnl|PID|e1289129 (AJ005563) SPR2E protein [Mus musculus]
            Length = 76
	    Score = 65 (22.9 bits), Expect = 0.0087, Sum P(2) = 0.0087
  =>gnl|PID|e1289137 (AJ005567) SPR2I protein [Mus musculus]
            Length = 76
	    Score = 62 (21.8 bits), Expect = 0.018, Sum P(2) = 0.018

>CcruzaQ_1625 has the following protein neighbors:
Sequence,   
  =>bbs|179621 insulin-like growth factor binding protein-5, IGFBP-5 [chickens,
            eye, Peptide Partial, 51 aa]
            Length = 51
	    Score = 56 (19.7 bits), Expect = 0.096, Sum P(2) = 0.091

>CcruzaQ_2013 has the following protein neighbors:
Sequence,   
  =>gi|862343 (L10908) Gcap1 gene product [Mus musculus] >prf||2022314A granule
           cell marker protein [Mus musculus] >prf||2022315A granule cell
           marker protein [Mus musculus]
           Length = 85
	    Score = 87 (30.6 bits), Expect = 0.014, P = 0.014

>CcruzaQ_1211 has the following protein neighbors:
Sequence,   
  =>gi|1532214 (U68270) cyclophilin A [Trypanosoma brucei brucei]
            Length = 177
	    Score = 765 (269.3 bits), Expect = 2.1e-80, Sum P(2) = 2.1e-80
  =>gi|1532210 (U68268) cyclophilin A [Trypanosoma congolense]
            Length = 177
	    Score = 725 (255.2 bits), Expect = 5.7e-76, Sum P(2) = 5.7e-76
  =>gi|1532212 (U68269) cyclophilin A [Trypanosoma vivax]
            Length = 177
	    Score = 734 (258.4 bits), Expect = 1.9e-75, Sum P(2) = 1.9e-75
  =>gnl|PID|e1203753 (Y13576) cyclophilin [Leishmania major]
            Length = 177
	    Score = 700 (246.4 bits), Expect = 2.6e-68, P = 2.6e-68
  =>sp|P14851|CYPH_CRILO PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A (PPIASE) (ROTAMASE)
            (CYCLOPHILIN A) (CYCLOSPORIN A-BINDING PROTEIN) >pir||CSHYAC
            peptidylprolyl isomerase (EC 5.2.1.8) A - Chinese hamster >gi|49496
            (X17105) cyclophilin (AA 1-164) [Cricetulus longicaudatus]
            Length = 164
	    Score = 611 (215.1 bits), Expect = 6.9e-59, P = 6.9e-59
  =>sp|P05092|CYPH_HUMAN PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A (PPIASE) (ROTAMASE)
            (CYCLOPHILIN A) (CYCLOSPORIN A-BINDING PROTEIN) >pir||CSHUA
            peptidylprolyl isomerase (EC 5.2.1.8) A - human >pdb|2CPL|
            Cyclophilin A >pdb|2RMA|A Homo sapiens >pdb|2RMA|C Homo sapiens
            >pdb|2RMA|E Homo sapiens >pdb|2RMA|G Homo sapiens >pdb|2RMA|I Homo
            sapiens >pdb|2RMA|K Homo sapiens >pdb|2RMA|M Homo sapiens
            >pdb|2RMA|O Homo sapiens >pdb|2RMA|Q Homo sapiens >pdb|2RMA|S Homo
            sapiens >pdb|2RMB|A Homo sapiens >pdb|2RMB|C Homo sapiens
            >pdb|2RMB|E Homo sapiens >pdb|2RMB|G Homo sapiens >pdb|2RMB|I Homo
            sapiens >pdb|2RMB|K Homo sapiens >pdb|2RMB|M Homo sapiens
            >pdb|2RMB|O Homo sapiens >pdb|2RMB|Q Homo sapiens >pdb|2RMB|S Homo
            sapiens >pdb|1CWC|A Mol_id: 1; Molecule: Cyclophilin A; Chain: A;
            Engineered: Yes; Mol_id: 2; Molecule:
            [4,N-Dimethylnorleucine]4-Cyclosporin; Chain: C; Engineered: Yes
            >pdb|1CWB|A Mol_id: 1; Molecule: Cyclophilin A; Chain: A;
            Engineered: Yes; Mol_id: 2; Molecule:
            [4-[(E)-2-Butenyl]-4,4,N-Trimethyl-L-Threonine]1- Cyclosporin;
            Chain: C; Engineered: Yes >pdb|1CWA|A Mol_id: 1; Molecule:
            Cyclophilin A; Chain: A; Engineered: Yes; Mol_id: 2; Molecule:
            Cyclosporin A; Chain: C; Engineered: Yes >pdb|1MIK|A Mol_id: 1;
            Molecule: Cyclophilin A; Chain: A; Engineered: Yes; Mol_id: 2;
            Molecule: [(5-Hydroxy)norvaline2]-Cyclosporin; Chain: B;
            Engineered: Yes >pdb|1FGL|A Homo sapiens >pdb|1AK4|A Chain A, Human
            Cyclophilin A Bound To The Amino-Terminal Domain Of Hiv-1 Capsid
            Capsid, Hiv-1, Cyclophilin A, Isomerase, Rotamase Complex (Capsid
            ProteinCYCLOSPORIN) Mol_id: 1; Molecule: Cyclophilin A; Chain: A,
            B; Ec: 5.2.1.8; En... >pdb|1AK4|B Chain B, Human Cyclophilin A
            Bound To The Amino-Terminal Domain Of Hiv-1 Capsid Capsid, Hiv-1,
            Cyclophilin A, Isomerase, Rotamase Complex (Capsid
            ProteinCYCLOSPORIN) Mol_id: 1; Molecule: Cyclophilin A; Chain: A,
            B; Ec: 5.2.1.8; En... >pdb|1OCA|  Human Cyclophilin A, Unligated,
            Nmr, 20 Structures Isomerase, Peptidyl-Prolyl Cis-Trans Isomerase
            Mol_id: 1; Molecule: Cyclophilin A; Chain: Null; Ec: 5.2.1.8;
            Engineered: Yes >pdb|1CWF|A Chain A, Human Cyclophilin A Complexed
            With 2-Val Cyclosporin Complex (IsomeraseIMMUNOSUPPRESSANT) Mol_id:
            1; Molecule: Cyclophilin A; Chain: A; Ec: 5.2.1.8; Engineered: Yes;
            Mol_id: 2; Molecule: Cyclosporin A; Chain: C; Engineere...
            >pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser
            Cyclosporin Complex (IsomeraseIMMUNOSUPPRESSANT) Mol_id: 1;
            Molecule: Cyclophilin A; Chain: A; Ec: 5.2.1.8; Engineered: Yes;
            Mol_id: 2; Molecule: Cyclosporin A; Chain: C; Enginee...
            >pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With
            1-(6,7-Dihydro)mebmt 2-Val 3-D-(2-S-Methyl)sarcosine Cyclosporin
            Complex (IsomeraseIMMUNOSUPPRESSANT) Mol_id: 1; Molecule:
            Cyclophilin A; Chain: A; Ec: 5.2.1.8; Engineered: Yes; Mol_id: ...
            >pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4
            4-Hydroxy-Meleu Cyclosporin Complex (IsomeraseIMMUNOSUPPRESSANT)
            Mol_id: 1; Molecule: Cyclophilin A; Chain: A; Ec: 5.2.1.8;
            Engineered: Yes; Mol_id: 2; Molecule: Cyclosporin A; Chain: ...
            >pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile
            Cyclosporin Complex (IsomeraseIMMUNOSUPPRESSANT) Mol_id: 1;
            Molecule: Cyclophilin A; Chain: A; Ec: 5.2.1.8; Engineered: Yes;
            Mol_id: 2; Molecule: Cyclosporin A; Chain: C; Enginee... >gi|30168
            (X52851) peptidylprolyl isomerase [Homo sapiens] >gi|30309 (Y00052)
            cyclophilin (AA 1-165) [Homo sapiens] >gi|2565299 (AF023859)
            cyclophilin A [Papio hamadryas] >gi|2565301 (AF023860) cyclophilin
            A [Cercopithecus aethiops] >gi|2565303 (AF023861) cyclophilin A
            [Macaca mulatta]
            Length = 165
	    Score = 606 (213.3 bits), Expect = 2.4e-58, P = 2.4e-58
  =>sp|P10111|CYPH_RAT PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A (PPIASE) (ROTAMASE)
            (CYCLOPHILIN A) (CYCLOSPORIN A-BINDING PROTEIN) (P31) >pir||CSRTA
            peptidylprolyl isomerase (EC 5.2.1.8) A - rat >gi|203702 (M19533)
            cyclophilin [Rattus norvegicus] >gi|951425 (M25637) housekeeping
            protein [Rattus norvegicus]
            Length = 164
	    Score = 606 (213.3 bits), Expect = 2.4e-58, P = 2.4e-58
  =>pdb|3CYS|A Cyclophilin A Complexed With Cyclosporin A (Nmr, 22 Structures)
            Length = 165
	    Score = 606 (213.3 bits), Expect = 2.4e-58, P = 2.4e-58
  =>pdb|5CYH|A Homo sapiens >pdb|4CYH|A Homo sapiens >pdb|3CYH|A Homo sapiens
            >pdb|2CYH|A Homo sapiens >pdb|1RMH|A Homo sapiens >pdb|1RMH|B Homo
            sapiens >pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia
            (Pseudo-Symmetric Monomer) Complex (IsomerasePEPTIDE), CYCLOPHILIN
            A, HIV-1 Capsid, Pseudo-Symmetry Mol_id: 1; Molecule: Cyclophilin
            A; Chain: A; Ec: 5.2.1.8; Engineered: Yes; Biological_unit: M...
            >pdb|1AWR|A Chain A, Cypa Complexed With Hagpia Complex
            (IsomerasePEPTIDE), CYCLOPHILIN A, HIV-1 Capsid, Pseudo-Symmetry
            Mol_id: 1; Molecule: Cyclophilin A; Chain: A, B, C, D, E, F; Ec:
            5.2.1.8; Engineered: Yes; Biological_unit: Monomer; Mol_...
            >pdb|1AWR|B Chain B, Cypa Complexed With Hagpia Complex
            (IsomerasePEPTIDE), CYCLOPHILIN A, HIV-1 Capsid, Pseudo-Symmetry
            Mol_id: 1; Molecule: Cyclophilin A; Chain: A, B, C, D, E, F; Ec:
            5.2.1.8; Engineered: Yes; Biological_unit: Monomer; Mol_...
            >pdb|1AWR|C Chain C, Cypa Complexed With Hagpia Complex
            (IsomerasePEPTIDE), CYCLOPHILIN A, HIV-1 Capsid, Pseudo-Symmetry
            Mol_id: 1; Molecule: Cyclophilin A; Chain: A, B, C, D, E, F; Ec:
            5.2.1.8; Engineered: Yes; Biological_unit: Monomer; Mol_...
            >pdb|1AWR|D Chain D, Cypa Complexed With Hagpia Complex
            (IsomerasePEPTIDE), CYCLOPHILIN A, HIV-1 Capsid, Pseudo-Symmetry
            Mol_id: 1; Molecule: Cyclophilin A; Chain: A, B, C, D, E, F; Ec:
            5.2.1.8; Engineered: Yes; Biological_unit: Monomer; Mol_...
            >pdb|1AWR|E Chain E, Cypa Complexed With Hagpia Complex
            (IsomerasePEPTIDE), CYCLOPHILIN A, HIV-1 Capsid, Pseudo-Symmetry
            Mol_id: 1; Molecule: Cyclophilin A; Chain: A, B, C, D, E, F; Ec:
            5.2.1.8; Engineered: Yes; Biological_unit: Monomer; Mol_...
            >pdb|1AWR|F Chain F, Cypa Complexed With Hagpia Complex
            (IsomerasePEPTIDE), CYCLOPHILIN A, HIV-1 Capsid, Pseudo-Symmetry
            Mol_id: 1; Molecule: Cyclophilin A; Chain: A, B, C, D, E, F; Ec:
            5.2.1.8; Engineered: Yes; Biological_unit: Monomer; Mol_...
            >pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric
            Monomer) Complex (IsomerasePEPTIDE), CYCLOPHILIN A, HIV-1 Capsid,
            Pseudo-Symmetry Mol_id: 1; Molecule: Cyclophilin A; Chain: A; Ec:
            5.2.1.8; Engineered: Yes; Biological_unit: M... >pdb|1AWV|A Chain
            A, Cypa Complexed With Hvgpia Complex (IsomerasePEPTIDE),
            CYCLOPHILIN A, HIV-1 Capsid, Pseudo-Symmetry Mol_id: 1; Molecule:
            Cyclophilin A; Chain: A, B, C ,D, E, F; Ec: 5.2.1.8; Engineered:
            Yes; Biological_unit: Monomer; Mol_... >pdb|1AWV|B Chain B, Cypa
            Complexed With Hvgpia Complex (IsomerasePEPTIDE), CYCLOPHILIN A,
            HIV-1 Capsid, Pseudo-Symmetry Mol_id: 1; Molecule: Cyclophilin A;
            Chain: A, B, C ,D, E, F; Ec: 5.2.1.8; Engineered: Yes;
            Biological_unit: Monomer; Mol_... >pdb|1AWV|C Chain C, Cypa
            Complexed With Hvgpia Complex (IsomerasePEPTIDE), CYCLOPHILIN A,
            HIV-1 Capsid, Pseudo-Symmetry Mol_id: 1; Molecule: Cyclophilin A;
            Chain: A, B, C ,D, E, F; Ec: 5.2.1.8; Engineered: Yes;
            Biological_unit: Monomer; Mol_... >pdb|1AWV|D Chain D, Cypa
            Complexed With Hvgpia Complex (IsomerasePEPTIDE), CYCLOPHILIN A,
            HIV-1 Capsid, Pseudo-Symmetry Mol_id: 1; Molecule: Cyclophilin A;
            Chain: A, B, C ,D, E, F; Ec: 5.2.1.8; Engineered: Yes;
            Biological_unit: Monomer; Mol_... >pdb|1AWV|E Chain E, Cypa
            Complexed With Hvgpia Complex (IsomerasePEPTIDE), CYCLOPHILIN A,
            HIV-1 Capsid, Pseudo-Symmetry Mol_id: 1; Molecule: Cyclophilin A;
            Chain: A, B, C ,D, E, F; Ec: 5.2.1.8; Engineered: Yes;
            Biological_unit: Monomer; Mol_... >pdb|1AWV|F Chain F, Cypa
            Complexed With Hvgpia Complex (IsomerasePEPTIDE), CYCLOPHILIN A,
            HIV-1 Capsid, Pseudo-Symmetry Mol_id: 1; Molecule: Cyclophilin A;
            Chain: A, B, C ,D, E, F; Ec: 5.2.1.8; Engineered: Yes;
            Biological_unit: Monomer; Mol_...
            Length = 164
	    Score = 606 (213.3 bits), Expect = 2.4e-58, P = 2.4e-58
  =>sp|P04374|CYPH_BOVIN PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A (PPIASE) (ROTAMASE)
            (CYCLOPHILIN A) (CYCLOSPORIN A-BINDING PROTEIN) >pir||CSBOAB
            peptidylprolyl isomerase (EC 5.2.1.8) A - bovine >pir||CSPGA
            peptidylprolyl isomerase (EC 5.2.1.8) A - pig
            Length = 163
	    Score = 605 (213.0 bits), Expect = 3.0e-58, P = 3.0e-58
  =>prf||1503232A peptidyl-Pro cis trans isomerase [Sus scrofa domestica]
            Length = 164
	    Score = 605 (213.0 bits), Expect = 3.0e-58, P = 3.0e-58
  =>sp|P17742|CYPH_MOUSE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A (PPIASE) (ROTAMASE)
            (CYCLOPHILIN A) (CYCLOSPORIN A-BINDING PROTEIN) (SP18) >pir||CSMSA
            peptidylprolyl isomerase (EC 5.2.1.8) A - mouse >gi|50621 (X52803)
            cyclophilin (AA 1 - 164) [Mus musculus]
            Length = 164
	    Score = 601 (211.6 bits), Expect = 8.0e-58, P = 8.0e-58
  =>prf||1713247A cyclophilin [Dictyostelium discoideum]
            Length = 179
	    Score = 599 (210.9 bits), Expect = 1.3e-57, P = 1.3e-57
  =>gnl|PID|e267528 (Y08320) cyclophylin [Digitalis lanata]
            Length = 172
	    Score = 598 (210.5 bits), Expect = 1.7e-57, P = 1.7e-57
  =>gnl|PID|e267365 (Y08273) cyclophilin [Digitalis lanata]
            Length = 172
	    Score = 596 (209.8 bits), Expect = 2.7e-57, P = 2.7e-57
  =>sp|Q39613|CYPH_CATRO PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE) (ROTAMASE)
            (CYCLOPHILIN) (CYCLOSPORIN A-BINDING PROTEIN) >gnl|PID|e140536
            (X85185) cyclophilin [Catharanthus roseus]
            Length = 172
	    Score = 594 (209.1 bits), Expect = 4.4e-57, P = 4.4e-57
  =>gi|2655159 (AF025804) cyclophilin 1 [Drosophila subobscura]
            Length = 157
	    Score = 593 (208.7 bits), Expect = 5.6e-57, P = 5.6e-57
  =>gnl|PID|d1026688 (AB012947) GC-CyP [Vicia faba]
            Length = 171
	    Score = 593 (208.7 bits), Expect = 5.6e-57, P = 5.6e-57
  =>bbs|178427 (S82440) cyclophilin [Hemicentrotus pulcherrimus, early pluteus
            larva, Peptide, 164 aa] [Hemicentrotus pulcherrimus]
            Length = 164
	    Score = 590 (207.7 bits), Expect = 1.2e-56, P = 1.2e-56
  =>sp|P54985|CYPH_BLAGE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE) (ROTAMASE)
            (CYCLOPHILIN) (CYCLOSPORIN A-BINDING PROTEIN) >pir||S63995
            peptidylprolyl isomerase (EC 5.2.1.8) - German cockroach
            >gnl|PID|e290267 (X87418) peptidyl-prolyl cis-trans isomerase.
            [Blattella germanica]
            Length = 164
	    Score = 588 (207.0 bits), Expect = 1.9e-56, P = 1.9e-56
  =>gi|2655157 (AF025803) cyclophilin 1 [Drosophila pseudoobscura]
            Length = 157
	    Score = 588 (207.0 bits), Expect = 1.9e-56, P = 1.9e-56
  =>pir||S54833 peptidylprolyl isomerase (EC 5.2.1.8) Cyp - kidney bean >gi|829119
            (X74403) cyclophilin [Phaseolus vulgaris]
            Length = 172
	    Score = 587 (206.6 bits), Expect = 2.4e-56, P = 2.4e-56
  =>gi|1480465 (U47812) cyclophilin Ovcyp-2 [Onchocerca volvulus]
            Length = 171
	    Score = 587 (206.6 bits), Expect = 2.4e-56, P = 2.4e-56
  =>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
            Complex (IsomerasePEPTIDE), CYCLOPHILIN A, HIV-1 Capsid,
            Pseudo-Symmetry Mol_id: 1; Molecule: Cyclophilin A; Chain: A; Ec:
            5.2.1.8; Engineered: Yes; Mutation: Seleno... >pdb|1AWT|A Chain A,
            Secypa Complexed With Hagpia Complex (IsomerasePEPTIDE),
            CYCLOPHILIN A, HIV-1 Capsid, Pseudo-Symmetry Mol_id: 1; Molecule:
            Cyclophilin A; Chain: A, B, C ,D, E, F; Ec: 5.2.1.8; Engineered:
            Yes; Mutation: Seleno-Methionine ... >pdb|1AWT|B Chain B, Secypa
            Complexed With Hagpia Complex (IsomerasePEPTIDE), CYCLOPHILIN A,
            HIV-1 Capsid, Pseudo-Symmetry Mol_id: 1; Molecule: Cyclophilin A;
            Chain: A, B, C ,D, E, F; Ec: 5.2.1.8; Engineered: Yes; Mutation:
            Seleno-Methionine ... >pdb|1AWT|C Chain C, Secypa Complexed With
            Hagpia Complex (IsomerasePEPTIDE), CYCLOPHILIN A, HIV-1 Capsid,
            Pseudo-Symmetry Mol_id: 1; Molecule: Cyclophilin A; Chain: A, B, C
            ,D, E, F; Ec: 5.2.1.8; Engineered: Yes; Mutation: Seleno-Methionine
            ... >pdb|1AWT|D Chain D, Secypa Complexed With Hagpia Complex
            (IsomerasePEPTIDE), CYCLOPHILIN A, HIV-1 Capsid, Pseudo-Symmetry
            Mol_id: 1; Molecule: Cyclophilin A; Chain: A, B, C ,D, E, F; Ec:
            5.2.1.8; Engineered: Yes; Mutation: Seleno-Methionine ...
            >pdb|1AWT|E Chain E, Secypa Complexed With Hagpia Complex
            (IsomerasePEPTIDE), CYCLOPHILIN A, HIV-1 Capsid, Pseudo-Symmetry
            Mol_id: 1; Molecule: Cyclophilin A; Chain: A, B, C ,D, E, F; Ec:
            5.2.1.8; Engineered: Yes; Mutation: Seleno-Methionine ...
            >pdb|1AWT|F Chain F, Secypa Complexed With Hagpia Complex
            (IsomerasePEPTIDE), CYCLOPHILIN A, HIV-1 Capsid, Pseudo-Symmetry
            Mol_id: 1; Molecule: Cyclophilin A; Chain: A, B, C ,D, E, F; Ec:
            5.2.1.8; Engineered: Yes; Mutation: Seleno-Methionine ...
            Length = 164
	    Score = 586 (206.3 bits), Expect = 3.1e-56, P = 3.1e-56
  =>sp|P29117|CYPM_RAT PEPTIDYL-PROLYL CIS-TRANS ISOMERASE, MITOCHONDRIAL
            PRECURSOR (PPIASE) (ROTAMASE) (CYCLOPHILIN) >gi|1549271 (U68544)
            cyclophilin D [Rattus norvegicus]
            Length = 206
	    Score = 585 (205.9 bits), Expect = 3.9e-56, P = 3.9e-56
  =>sp|P25007|CYPH_DROME PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE) (ROTAMASE)
            (CYCLOPHILIN) (CYCLOSPORIN A-BINDING PROTEIN) >pir||B38388
            peptidylprolyl isomerase (EC 5.2.1.8) (cyclophilin) cyp-1 - fruit
            fly (Drosophila melanogaster) >gi|157164 (M62398) CYP-1 [Drosophila
            melanogaster]
            Length = 165
	    Score = 583 (205.2 bits), Expect = 6.4e-56, P = 6.4e-56
  =>sp|P30405|CYPM_HUMAN PEPTIDYL-PROLYL CIS-TRANS ISOMERASE, MITOCHONDRIAL
            PRECURSOR (PPIASE) (ROTAMASE) (CYCLOPHILIN) >pir||A41581
            peptidylprolyl isomerase (EC 5.2.1.8) 3 precursor - human
            >gi|181274 (M80254) cyclophilin 3 protein [Homo sapiens]
            Length = 207
	    Score = 581 (204.5 bits), Expect = 1.0e-55, P = 1.0e-55
  =>sp|P21568|CYPH_LYCES PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE) (ROTAMASE)
            (CYCLOPHILIN) (CYCLOSPORIN A-BINDING PROTEIN) >gi|170440 (M55019)
            cyclophilin [Lycopersicon esculentum]
            Length = 171
	    Score = 577 (203.1 bits), Expect = 2.8e-55, P = 2.8e-55
  =>gi|1480461 (U47811) cyclophilin Bmcyp-2 [Brugia malayi]
            Length = 171
	    Score = 577 (203.1 bits), Expect = 2.8e-55, P = 2.8e-55
  =>sp|P21569|CYPH_MAIZE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE) (ROTAMASE)
            (CYCLOPHILIN) (CYCLOSPORIN A-BINDING PROTEIN) >pir||CSZM
            peptidylprolyl isomerase (EC 5.2.1.8) - maize >gi|168461 (M55021)
            cyclophilin [Zea mays] >gi|829148 (X68678) cyclophilin [Zea mays]
            Length = 172
	    Score = 574 (202.1 bits), Expect = 5.8e-55, P = 5.8e-55
  =>pir||CSTO peptidylprolyl isomerase (EC 5.2.1.8) - tomato
           Length = 171
	    Score = 574 (202.1 bits), Expect = 5.8e-55, P = 5.8e-55
  =>pir||S71219 cytosolic cyclophilin ROC3 - Arabidopsis thaliana >gi|1305455
            (U40399) cytosolic cyclophilin [Arabidopsis thaliana]
            Length = 173
	    Score = 573 (201.7 bits), Expect = 7.4e-55, P = 7.4e-55
  =>gi|1480463 (U47813) cyclophilin Dicyp-2 [Dirofilaria immitis]
            Length = 171
	    Score = 572 (201.4 bits), Expect = 9.4e-55, P = 9.4e-55
  =>pir||S48017 peptidylprolyl isomerase (EC 5.2.1.8) Cyp2 - rice >gi|600767
            (L29469) cyclophilin 2 [Oryza sativa]
            Length = 172
	    Score = 569 (200.3 bits), Expect = 2.0e-54, P = 2.0e-54
  =>gi|2443757 (AF020434) cyclophilin [Arabidopsis thaliana]
            Length = 174
	    Score = 568 (199.9 bits), Expect = 2.5e-54, P = 2.5e-54
  =>gi|600769 (L29470) cyclophilin 2 [Oryza sativa]
           Length = 172
	    Score = 563 (198.2 bits), Expect = 8.5e-54, P = 8.5e-54
  =>sp|P34790|CYP1_ARATH PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE) (ROTAMASE)
            (CYCLOPHILIN) (CYCLOSPORIN A-BINDING PROTEIN) >gi|405129 (L14844)
            cyclophilin [Arabidopsis thaliana]
            Length = 172
	    Score = 562 (197.8 bits), Expect = 1.1e-53, P = 1.1e-53
  =>sp|P22011|CYPH_CANAL PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE) (ROTAMASE)
            (CYCLOPHILIN) (CYCLOSPORIN A-BINDING PROTEIN) (CPH) >pir||CSCK
            peptidylprolyl isomerase (EC 5.2.1.8) - yeast (Candida albicans)
            >gi|170851 (M60628) peptidyl-prolyl cis-trans isomerase [Candida
            albicans]
            Length = 162
	    Score = 561 (197.5 bits), Expect = 1.4e-53, P = 1.4e-53
  =>gi|1928939 (U92087) stress responsive cyclophilin [Solanum commersonii]
            Length = 172
	    Score = 559 (196.8 bits), Expect = 2.2e-53, P = 2.2e-53
  =>pir||S48018 peptidylprolyl isomerase (EC 5.2.1.8) Cyp1 - rice >gi|600765
            (L29471) cyclophilin 1 [Oryza sativa]
            Length = 179
	    Score = 557 (196.1 bits), Expect = 3.7e-53, P = 3.7e-53
  =>pir||S50141 peptidylprolyl isomerase (EC 5.2.1.8) - Arabidopsis thaliana
            >gi|460968 (U07276) peptidyl-prolyl cis-trans isomerase
            [Arabidopsis thaliana] >gi|992643 (U32186) cyclophilin [Arabidopsis
            thaliana] >prf||2021266A peptidyl-Pro cis-trans isomerase
            [Arabidopsis thaliana]
            Length = 172
	    Score = 555 (195.4 bits), Expect = 6.0e-53, P = 6.0e-53
  =>pir||CSRP peptidylprolyl isomerase (EC 5.2.1.8) - rape
           Length = 171
	    Score = 555 (195.4 bits), Expect = 6.0e-53, P = 6.0e-53
  =>gi|2190533 (U30265) similar to Schistosoma japonicum cyclophylin, encoded by
            GenBank Accession Number M93420;  Method: conceptual translation
            supplied by author
            Length = 273
	    Score = 555 (195.4 bits), Expect = 6.0e-53, P = 6.0e-53
  =>pir||A53422 peptidylprolyl isomerase (EC 5.2.1.8) ROC1 - Arabidopsis thaliana
            Length = 173
	    Score = 554 (195.0 bits), Expect = 7.6e-53, P = 7.6e-53
  =>sp|P52009|CYP1_CAEEL PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 (PPIASE) (ROTAMASE)
            (CYCLOPHILIN-1) >gi|1146430 (U30943) cyclophilin-1 [Caenorhabditis
            elegans]
            Length = 192
	    Score = 553 (194.7 bits), Expect = 9.7e-53, P = 9.7e-53
  =>sp|P14088|CYPH_ECHGR PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE) (ROTAMASE)
            (CYCLOPHILIN) (CYCLOSPORIN A-BINDING PROTEIN) >pir||A45000
            cyclophilin - tapeworm (Echinococcus granulosus) (fragment)
            >gi|158844 (J04664) antigen ORF (cyclophilin) [Echinococcus
            granulosus]
            Length = 161
	    Score = 552 (194.3 bits), Expect = 1.2e-52, P = 1.2e-52
  =>gi|167138 (M55018) cyclophilin [Brassica napus]
           Length = 168
	    Score = 552 (194.3 bits), Expect = 1.2e-52, P = 1.2e-52
  =>sp|P24525|CYPH_BRANA PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE) (ROTAMASE)
            (CYCLOPHILIN) (CYCLOSPORIN A-BINDING PROTEIN)
            Length = 171
	    Score = 552 (194.3 bits), Expect = 1.2e-52, P = 1.2e-52
  =>sp|P18253|CYPH_SCHPO PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE) (ROTAMASE)
            (CYCLOPHILIN) (CYCLOSPORIN A-BINDING PROTEIN) (CPH) >pir||CSZPA
            peptidylprolyl isomerase (EC 5.2.1.8) A - fission yeast
            (Schizosaccharomyces pombe) >gi|5016 (X53223) cyclophilin (AA
            1-162) [Schizosaccharomyces pombe] >gnl|PID|d1012858 (D83992)
            peptidyl-prolyl cis-trans isomerase [Schizosaccharomyces pombe]
            Length = 162
	    Score = 551 (194.0 bits), Expect = 1.6e-52, P = 1.6e-52
  =>gnl|PID|e1226445 (Y16088) cytosolic form of cyclophilin [Lupinus luteus]
            Length = 172
	    Score = 551 (194.0 bits), Expect = 1.6e-52, P = 1.6e-52
  =>gi|160945 (M93420) cyclophilin [Schistosoma japonicum]
           Length = 179
	    Score = 550 (193.6 bits), Expect = 2.0e-52, P = 2.0e-52
  =>gi|939726 (U31370) cyclophilin [Arabidopsis thaliana]
           Length = 176
	    Score = 550 (193.6 bits), Expect = 2.0e-52, P = 2.0e-52
  =>gi|1245402 (U50388) cyclophilin A [Schistosoma mansoni]
            Length = 172
	    Score = 549 (193.3 bits), Expect = 2.6e-52, P = 2.6e-52
  =>sp|P52011|CYP3_CAEEL PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 3 (PPIASE) (ROTAMASE)
            (CYCLOPHILIN-3) >gi|1109668 (U31077) cyclophilin isoform 3
            [Caenorhabditis elegans]
            Length = 173
	    Score = 548 (192.9 bits), Expect = 3.3e-52, P = 3.3e-52
  =>pir||S71220 cytosolic cyclophilin ROC2 - Arabidopsis thaliana >gi|1305457
            (U40400) cytosolic cyclophilin [Arabidopsis thaliana]
            Length = 176
	    Score = 548 (192.9 bits), Expect = 3.3e-52, P = 3.3e-52
  =>gi|2624966 (AF017993) cyclophilin [Entamoeba histolytica]
            Length = 167
	    Score = 548 (192.9 bits), Expect = 3.3e-52, P = 3.3e-52
  =>pir||B53522 20k cyclophilin - Toxoplasma gondii (fragment) >gi|436959 (U04634)
            20 kDa cyclophilin precursor [Toxoplasma gondii]
            Length = 347
	    Score = 540 (190.1 bits), Expect = 2.3e-51, P = 2.3e-51
  =>pir||S66681 peptidylprolyl isomerase (EC 5.2.1.8) A - human
            Length = 301
	    Score = 536 (188.7 bits), Expect = 6.2e-51, P = 6.2e-51
  =>sp|P14832|CYPH_YEAST PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE) (ROTAMASE)
            (CYCLOPHILIN) (CYCLOSPORIN A-BINDING PROTEIN) (CPH) (PPI-II)
            >pir||CSBY peptidylprolyl isomerase (EC 5.2.1.8), cytosolic - yeast
            (Saccharomyces cerevisiae) >gi|3618 (X17505) cyclophilin (AA 1-162)
            [Saccharomyces cerevisiae] >gi|171314 (M30513) cyclophilin
            [Saccharomyces cerevisiae] >gi|899403 (Z50046) Cpr1p [Saccharomyces
            cerevisiae]
            Length = 162
	    Score = 532 (187.3 bits), Expect = 1.6e-50, P = 1.6e-50
  =>gnl|PID|e1188506 (Z92822) ZK520.5 [Caenorhabditis elegans]
            Length = 172
	    Score = 532 (187.3 bits), Expect = 1.6e-50, P = 1.6e-50
  =>gi|2828149 (AF042385) cyclophilin-33A [Homo sapiens]
            Length = 301
	    Score = 531 (186.9 bits), Expect = 2.1e-50, P = 2.1e-50
  =>gi|499693 (L32095) cyclophilin [Vicia faba]
           Length = 248
	    Score = 530 (186.6 bits), Expect = 2.7e-50, P = 2.7e-50
  =>gi|2959712 (AF052206) cyclophilin 1 [Chlamydomonas reinhardtii]
            Length = 172
	    Score = 530 (186.6 bits), Expect = 2.7e-50, P = 2.7e-50
  =>sp|P34887|CYPH_ALLCE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE) (ROTAMASE)
            (CYCLOPHILIN) (CYCLOSPORIN A-BINDING PROTEIN) >gi|289118 (L13365)
            cyclophilin [Allium cepa]
            Length = 150
	    Score = 524 (184.5 bits), Expect = 1.1e-49, P = 1.1e-49
  =>sp|P52015|CYP7_CAEEL PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 7 (PPIASE) (ROTAMASE)
            (CYCLOPHILIN-7) >gi|863016 (U27559) cyclophilin [Caenorhabditis
            elegans]
            Length = 171
	    Score = 523 (184.1 bits), Expect = 1.5e-49, P = 1.5e-49
  =>gi|972781 (L46884) cyclophilin [Schistosoma mansoni]
           Length = 161
	    Score = 522 (183.8 bits), Expect = 1.9e-49, P = 1.9e-49
  =>sp|P34791|CYP4_ARATH PEPTIDYL-PROLYL CIS-TRANS ISOMERASE, CHLOROPLAST
            PRECURSOR (PPIASE) (ROTAMASE) (CYCLOPHILIN) (CYCLOSPORIN A-BINDING
            PROTEIN) >pir||B53422 peptidylprolyl isomerase (EC 5.2.1.8) ROC4 -
            Arabidopsis thaliana >gi|405131 (L14845) cyclophilin [Arabidopsis
            thaliana] >gi|1322278 (U42724) cyclophilin [Arabidopsis thaliana]
            Length = 260
	    Score = 518 (182.3 bits), Expect = 5.0e-49, P = 5.0e-49
  =>gnl|PID|d1018574 (D90909) peptidyl-prolyl cis-trans isomerase [Synechocystis
            sp.]
            Length = 171
	    Score = 516 (181.6 bits), Expect = 8.1e-49, P = 8.1e-49
  =>gi|2828151 (AF042386) cyclophilin-33B [Homo sapiens]
            Length = 296
	    Score = 514 (180.9 bits), Expect = 1.3e-48, P = 1.3e-48
  =>sp|Q06118|CYPH_STRCH PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE) (ROTAMASE)
            (CYCLOPHILIN HOMOLOG) >pir||S28020 peptidylprolyl isomerase (EC
            5.2.1.8) - Streptomyces chrysomallus >gi|46836 (Z15137)
            cyclosporin-A binding protein [Streptomyces chrysomallus]
            Length = 165
	    Score = 507 (178.5 bits), Expect = 7.3e-48, P = 7.3e-48
  =>sp|P25719|CYPC_YEAST PEPTIDYL-PROLYL CIS-TRANS ISOMERASE C PRECURSOR (PPIASE)
            (ROTAMASE) (CYCLOPHILIN C) (PPI-III) >pir||S30507 peptidylprolyl
            isomerase (EC 5.2.1.8) 3 precursor - yeast (Saccharomyces
            cerevisiae) >gi|3592 (X56962) cyclophilin-3 (cyclosporin-sensitive
            proline rotamase-3) [Saccharomyces cerevisiae] >gi|171358 (M84758)
            cyclophilin [Saccharomyces cerevisiae] >gi|587533 (Z46373) CPR3
            gene (CYP3), len: 182. CAI: 0.32, CYPC_YEAST P25719 peptidyl-prolyl
            cis-trans isomerase [Saccharomyces cerevisiae]
            Length = 182
	    Score = 507 (178.5 bits), Expect = 7.3e-48, P = 7.3e-48
  =>sp|P52010|CYP2_CAEEL PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 2 (PPIASE) (ROTAMASE)
            (CYCLOPHILIN-2) >gi|1109674 (U34354) cyclophilin isoform 2 (cyp-2)
            [Caenorhabditis elegans]
            Length = 171
	    Score = 507 (178.5 bits), Expect = 7.3e-48, P = 7.3e-48
  =>gi|1045518 (U36797) cyclophilin-A [Hirudo medicinalis] >prf||2207414A
            cyclophilin [Hirudo medicinalis]
            Length = 143
	    Score = 506 (178.1 bits), Expect = 9.3e-48, P = 9.3e-48
  =>gi|972047 (F14571) cyclophilin A [Sus scrofa]
           Length = 127
	    Score = 502 (176.7 bits), Expect = 2.5e-47, P = 2.5e-47
  =>gi|1764137 (U81792) PIG28 [Uromyces fabae]
            Length = 163
	    Score = 502 (176.7 bits), Expect = 2.5e-47, P = 2.5e-47
  =>gi|2443755 (AF020433) cyclophilin [Arabidopsis thaliana]
            Length = 201
	    Score = 498 (175.3 bits), Expect = 6.5e-47, P = 6.5e-47
  =>gi|3420055 (AC004680) cyclophilin [Arabidopsis thaliana]
            Length = 201
	    Score = 498 (175.3 bits), Expect = 6.5e-47, P = 6.5e-47
  =>gi|1209511 (U33869) cyclophilin [Plasmodium falciparum]
            Length = 171
	    Score = 497 (175.0 bits), Expect = 8.4e-47, P = 8.4e-47
  =>sp|P10255|CYPH_NEUCR PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PRECURSOR (PPIASE)
            (ROTAMASE) (CYCLOPHILIN) (CYCLOSPORIN A-BINDING PROTEIN) (CPH)
            >pir||CSNCM peptidylprolyl isomerase (EC 5.2.1.8) precursor,
            mitochondrial - Neurospora crassa >gi|168806 (J03963) cyclophilin
            precursor [Neurospora crassa] >gi|295926 (X17692) cyclophilin
            (mitochondrial precursor) [Neurospora crassa]
            Length = 223
	    Score = 494 (173.9 bits), Expect = 1.7e-46, P = 1.7e-46
  =>gi|295927 (X17692) cyclophilin (cytosolic form) [Neurospora crassa]
           Length = 180
	    Score = 494 (173.9 bits), Expect = 1.7e-46, P = 1.7e-46
  =>sp|P26882|CYP4_BOVIN 40 KD PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE)
            (ROTAMASE) (CYCLOPHILIN-40) (CYP-40) (CYCLOPHILIN-RELATED PROTEIN)
            (ESTROGEN RECEPTOR BINDING CYCLOPHILIN) >pir||A46579 estrogen
            receptor-binding cyclophilin - bovine >gnl|PID|d1003666 (D14074)
            cyclophilin [Bos taurus]
            Length = 370
	    Score = 493 (173.5 bits), Expect = 2.2e-46, P = 2.2e-46
  =>pir||S71849 peptidylprolyl isomerase (EC 5.2.1.8) A precursor, mitochondrial -
            cyclosporin fungus (SGC3) >gi|642359 (Z48002) cyclophilin,
            mitochondrial form [Tolypocladium inflatum]
            Length = 227
	    Score = 492 (173.2 bits), Expect = 2.8e-46, P = 2.8e-46
  =>gi|642360 (Z48002) cyclophilin, cytosolic form [Tolypocladium inflatum]
           Length = 180
	    Score = 492 (173.2 bits), Expect = 2.8e-46, P = 2.8e-46
  =>pir||S51497 peptidylprolyl isomerase (EC 5.2.1.8) A - cyclosporin fungus
            (SGC3) >prf||2113249A cyclophilin [Tolypocladium inflatum]
            Length = 180
	    Score = 491 (172.8 bits), Expect = 3.6e-46, P = 3.6e-46
  =>sp|Q08752|CYP4_HUMAN 40 KD PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE)
            (ROTAMASE) (CYCLOPHILIN-40) (CYP-40) (CYCLOPHILIN-RELATED PROTEIN)
            >pir||A45981 peptidylprolyl isomerase (EC 5.2.1.8) CyP-40 - human
            >gi|348910 (L11667) cyclophilin-40 [Homo sapiens] >gnl|PID|d1010571
            (D63861) cyclophilin 40 [Homo sapiens]
            Length = 370
	    Score = 490 (172.5 bits), Expect = 4.6e-46, P = 4.6e-46
  =>gnl|PID|e316521 (Y13117) peptidylprolyl isomerase [Paramecium primaurelia]
            Length = 162
	    Score = 489 (172.1 bits), Expect = 5.9e-46, P = 5.9e-46
  =>pir||JT0686 peptidylprolyl isomerase (EC 5.2.1.8) a, cytosolic - fungus
            (Fusarium sporotrichioides)
            Length = 179
	    Score = 487 (171.4 bits), Expect = 9.6e-46, P = 9.6e-46
  =>sp|P24369|CYPB_MOUSE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE B PRECURSOR (PPIASE)
            (ROTAMASE) (CYCLOPHILIN B) (S-CYCLOPHILIN) (SCYLP) (CYP-S1)
            >gi|53035 (X58990) cyclophilin CyP-S1 [Mus musculus] >gi|192865
            (M60456) cyclophilin [Mus musculus]
            Length = 208
	    Score = 486 (171.1 bits), Expect = 1.2e-45, P = 1.2e-45
  =>pir||A56861 peptidylprolyl isomerase (EC 5.2.1.8) CyP-S1 precursor - mouse
            Length = 216
	    Score = 486 (171.1 bits), Expect = 1.2e-45, P = 1.2e-45
  =>sp|P35627|CYP2_ARATH PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE) (ROTAMASE)
            (CYCLOPHILIN) (CYCLOSPORIN A-BINDING PROTEIN) >pir||S22496
            peptidylprolyl isomerase (EC 5.2.1.8) - Arabidopsis thaliana
            >gi|16248 (X63616) cyclophorin-like protein [Arabidopsis thaliana]
            Length = 169
	    Score = 483 (170.0 bits), Expect = 2.5e-45, P = 2.5e-45
  =>gi|181250 (M60457) cyclophilin [Homo sapiens]
           Length = 207
	    Score = 482 (169.7 bits), Expect = 3.2e-45, P = 3.2e-45
  =>gi|337999 (M63573) secreted cyclophilin-like protein [Homo sapiens]
           Length = 216
	    Score = 482 (169.7 bits), Expect = 3.2e-45, P = 3.2e-45
  =>sp|P23284|CYPB_HUMAN PEPTIDYL-PROLYL CIS-TRANS ISOMERASE B PRECURSOR (PPIASE)
            (ROTAMASE) (CYCLOPHILIN B) (S-CYCLOPHILIN) (SCYLP) (CYP-S1)
            >pir||CSHUB peptidylprolyl isomerase (EC 5.2.1.8) B precursor -
            human >gi|181335 (M60857) cyclophilin B [Homo sapiens]
            Length = 208
	    Score = 482 (169.7 bits), Expect = 3.2e-45, P = 3.2e-45
  =>pdb|1CYN|A Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin
            Cyclosporin, Isomerase, Rotamase, Signal Mol_id: 1; Molecule:
            Cyclophilin B; Chain: A; Engineered: Yes; Mol_id: 2; Molecule:
            [d-(Cholinyl)ala]8-Cyclosporin; Chain: C...
            Length = 178
	    Score = 482 (169.7 bits), Expect = 3.2e-45, P = 3.2e-45
  =>sp|P24367|CYPB_CHICK PEPTIDYL-PROLYL CIS-TRANS ISOMERASE B PRECURSOR (PPIASE)
            (ROTAMASE) (CYCLOPHILIN B) (S-CYCLOPHILIN) (SCYLP) >pir||A40516
            peptidylprolyl isomerase (EC 5.2.1.8) (S-cyclophilin) precursor -
            chicken >gi|212649 (M63553) S-cyclophilin [Gallus gallus]
            Length = 207
	    Score = 481 (169.3 bits), Expect = 4.1e-45, P = 4.1e-45
  =>gi|1117968 (U40763) CARS-Cyp [Homo sapiens] >gnl|PID|e268465 (X99717) SRcyp
            protein [Homo sapiens]
            Length = 754
	    Score = 436 (153.5 bits), Expect = 4.4e-45, Sum P(3) = 4.4e-45
  =>pir||S52758 adenosine kinase (EC 2.7.1.20) - Leishmania donovani
            Length = 366
	    Score = 477 (167.9 bits), Expect = 1.1e-44, P = 1.1e-44
  =>gi|2828710 (AF043642) matrin cyclophilin [Rattus norvegicus]
            Length = 752
	    Score = 435 (153.1 bits), Expect = 1.8e-44, Sum P(3) = 1.8e-44
  =>pir||S71547 peptidylprolyl isomerase (EC 5.2.1.8), isoform 20.3K - rat
            Length = 183
	    Score = 474 (166.9 bits), Expect = 2.3e-44, P = 2.3e-44
  =>gi|3288923 (AF071225) cyclophilin B [Rattus norvegicus]
            Length = 208
	    Score = 474 (166.9 bits), Expect = 2.3e-44, P = 2.3e-44
  =>gi|849081 (U17900) cyclophilin B precursor [Orpinomyces sp.]
           Length = 203
	    Score = 468 (164.7 bits), Expect = 9.9e-44, P = 9.9e-44
  =>sp|P80311|CYPB_BOVIN PEPTIDYL-PROLYL CIS-TRANS ISOMERASE B PRECURSOR (PPIASE)
            (ROTAMASE) (CYCLOPHILIN B) (S-CYCLOPHILIN) (SCYLP)
            >gnl|PID|d1003665 (D14073) cyclophilin B [Bos taurus]
            Length = 208
	    Score = 464 (163.3 bits), Expect = 2.6e-43, P = 2.6e-43
  =>sp|P30412|CYPC_MOUSE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE C (PPIASE) (ROTAMASE)
            (CYCLOPHILIN C) >pir||A40047 peptidylprolyl isomerase (EC 5.2.1.8)
            (cyclophilin C) - mouse >gi|192899 (M74227) cyclophilin C [Mus
            musculus]
            Length = 212
	    Score = 463 (163.0 bits), Expect = 3.3e-43, P = 3.3e-43
  =>pdb|2RMC|A Mus musculus >pdb|2RMC|C Mus musculus >pdb|2RMC|E Mus musculus
            >pdb|2RMC|G Mus musculus
            Length = 182
	    Score = 463 (163.0 bits), Expect = 3.3e-43, P = 3.3e-43
  =>sp|P48820|CYPR_BOVIN PEPTIDYL-PROLYL CIS-TRANS ISOMERASE, RETINAL-SPECIFIC
            ISOZYME >gi|1004092 (L41692) retina-specific cyclophilin [Bos
            taurus]
            Length = 252
	    Score = 463 (163.0 bits), Expect = 3.3e-43, P = 3.3e-43
  =>sp|P52014|CYP6_CAEEL PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 6 PRECURSOR (PPIASE)
            (ROTAMASE) (CYCLOPHILIN-6) >gi|485120 (U00051) coded for by C.
            elegans cDNA yk89e10.5; coded for by C. elegans cDNA yk89e10.3;
            highly similar to peptidyl-prolyl cis-trans isomerase B precursor
            [Caenorhabditis elegans] >gi|863010 (U27354) cyclophilin
            [Caenorhabditis elegans]
            Length = 201
	    Score = 458 (161.2 bits), Expect = 1.1e-42, P = 1.1e-42
  =>sp|P52013|CYP5_CAEEL PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 (PPIASE) (ROTAMASE)
            (CYCLOPHILIN-5) >gi|1155221 (U31948) cyclophilin isoform 5
            [Caenorhabditis elegans]
            Length = 204
	    Score = 454 (159.8 bits), Expect = 3.0e-42, P = 3.0e-42
  =>gi|1245400 (U50389) cyclophilin B [Schistosoma japonicum]
            Length = 213
	    Score = 454 (159.8 bits), Expect = 3.0e-42, P = 3.0e-42
  =>gnl|PID|e1297816 (Z92784) F31C3.1 [Caenorhabditis elegans]
            Length = 204
	    Score = 454 (159.8 bits), Expect = 3.0e-42, P = 3.0e-42
  =>sp|P45877|CYPC_HUMAN PEPTIDYL-PROLYL CIS-TRANS ISOMERASE C (PPIASE) (ROTAMASE)
            (CYCLOPHILIN C) >pir||A54204 peptidylprolyl isomerase (EC 5.2.1.8)
            C precursor - human >bbs|149388 (S71018) cyclophilin C, Cyp-C
            [human, kidney, Peptide, 212 aa] [Homo sapiens]
            Length = 212
	    Score = 453 (159.5 bits), Expect = 3.8e-42, P = 3.8e-42
  =>gi|1004090 (L41691) spliced variant with Ran-binding and cyclophilin domains
            [Bos taurus]
            Length = 1085
	    Score = 463 (163.0 bits), Expect = 4.6e-42, P = 4.6e-42
  =>sp|P49792|N358_HUMAN NUCLEAR PORE COMPLEX PROTEIN NUP358 (NUCLEOPORIN NUP358)
            (358 KD NUCLEOPORIN) (P270) >pir||A57545 nucleoporin Nup358 - human
            >gi|857368 (L41840) nucleoporin [Homo sapiens] >prf||2115329A
            nucleoprotein Nup358 [Homo sapiens]
            Length = 3224
	    Score = 465 (163.7 bits), Expect = 1.6e-41, P = 1.6e-41
  =>pir||S58884 Ran-binding protein 2 - human >gnl|PID|d1008244 (D42063) RanBP2
            (Ran-binding protein 2) [Homo sapiens]
            Length = 3224
	    Score = 465 (163.7 bits), Expect = 1.6e-41, P = 1.6e-41
  =>prf||2115390A Ran/TC4-binding nucleopore protein [Homo sapiens]
            Length = 3224
	    Score = 465 (163.7 bits), Expect = 1.6e-41, P = 1.6e-41
  =>gi|2708309 (AF016371) U-snRNP-associated cyclophilin [Homo sapiens]
            Length = 177
	    Score = 447 (157.4 bits), Expect = 1.7e-41, P = 1.7e-41
  =>sp|P53691|CYP6_YEAST PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP6 (PPIASE)
            (ROTAMASE) >pir||S48567 hypothetical protein YLR216c - yeast
            (Saccharomyces cerevisiae) >gi|544520 (U14913) Cpr6p: cyclophilin
            related to the mammalian CyP-40 [Saccharomyces cerevisiae]
            >gi|1515348 (U48867) Cpr6p [Saccharomyces cerevisiae]
            Length = 371
	    Score = 442 (155.6 bits), Expect = 5.6e-41, P = 5.6e-41
  =>gi|992633 (U30874) cyclophilin B [Schistosoma mansoni] >prf||2208425A B-like
           cyclophilin [Schistosoma mansoni]
           Length = 213
	    Score = 439 (154.5 bits), Expect = 1.2e-40, P = 1.2e-40
  =>pir||S52760 peptidylprolyl isomerase (EC 5.2.1.8) - Plasmodium falciparum
            >pir||S68357 peptidylprolyl isomerase (EC 5.2.1.8) precursor -
            Plasmodium falciparum >gi|758222 (X85956) peptidylprolyl isomerase
            [Plasmodium falciparum]
            Length = 195
	    Score = 430 (151.4 bits), Expect = 1.1e-39, P = 1.1e-39
  =>sp|P24368|CYPB_RAT PEPTIDYL-PROLYL CIS-TRANS ISOMERASE B PRECURSOR (PPIASE)
            (ROTAMASE) (CYCLOPHILIN B) (S-CYCLOPHILIN) (SCYLP) (CYP-S1)
            Length = 208
	    Score = 428 (150.7 bits), Expect = 1.7e-39, P = 1.7e-39
  =>sp|P52016|CYP8_CAEEL PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 8 (PPIASE) (ROTAMASE)
            (CYCLOPHILIN-8) >gi|1072171 (U40938) coded for by C. elegans cDNA
            CEESF41R;  contains a cyclophilin-like PPIase domain
            [Caenorhabditis elegans] >gi|1185432 (U31078) cyclophilin isoform 8
            [Caenorhabditis elegans]
            Length = 466
	    Score = 428 (150.7 bits), Expect = 1.7e-39, P = 1.7e-39
  =>gnl|PID|d1024669 (AB002814) cyclophilin G [Tachypleus tridentatus]
            Length = 220
	    Score = 427 (150.3 bits), Expect = 2.2e-39, P = 2.2e-39
  =>pir||A53522 18.5k cyclophilin precursor - Toxoplasma gondii
            Length = 179
	    Score = 419 (147.5 bits), Expect = 1.5e-38, P = 1.5e-38
  =>pir||S62327 cyclophilin-like protein wis2 - fission yeast (Schizosaccharomyces
            pombe) >gnl|PID|e205292 (X91981) wis2 gene product
            [Schizosaccharomyces pombe] >gnl|PID|e334342 (Z98598) heat shock
            element [Schizosaccharomyces pombe]
            Length = 356
	    Score = 418 (147.1 bits), Expect = 2.0e-38, P = 2.0e-38
  =>gi|348725 (L11668) cyclophilin-40 [Bos taurus]
           Length = 309
	    Score = 416 (146.4 bits), Expect = 3.2e-38, P = 3.2e-38
  =>sp|P52018|CYPB_CAEEL PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 11 (PPIASE)
            (ROTAMASE) (CYCLOPHILIN-11) >gi|1041370 (Z66499) T01B7.4
            [Caenorhabditis elegans] >gi|1155227 (U34955) cyclophilin isoform
            11 (CYP-11) [Caenorhabditis elegans]
            Length = 183
	    Score = 415 (146.1 bits), Expect = 4.1e-38, P = 4.1e-38
  =>gi|436957 (U04633) 18 kDa cyclophilin [Toxoplasma gondii]
           Length = 179
	    Score = 413 (145.4 bits), Expect = 6.7e-38, P = 6.7e-38
  =>sp|Q27450|CYP1_BRUMA PEPTIDYLPROLYL ISOMERASE CYP-1 (PEPTIDYLPROLYL CIS-TRANS
            ISOMERASE) (CYCLOPHILIN) (PPIASE) >gi|984562 (L37292)
            peptidylprolyl isomerase [Brugia malayi] >prf||2121248A cyclophilin
            [Brugia malayi]
            Length = 843
	    Score = 401 (141.2 bits), Expect = 7.0e-38, Sum P(2) = 7.0e-38
  =>sp|P30414|NKCR_HUMAN NK-TUMOR RECOGNITION PROTEIN (NATURAL-KILLER CELLS
            CYCLOPHILIN-RELATED PROTEIN) (NK-TR PROTEIN) >pir||A47328 natural
            killer cell tumor-recognition protein - human >gi|181252 (L04288)
            cyclophilin-related protein [Homo sapiens]
            Length = 1403
	    Score = 388 (136.6 bits), Expect = 2.7e-37, Sum P(3) = 2.7e-37
  =>gi|192867 (L04289) cyclophilin-related protein [Mus musculus]
           Length = 1421
	    Score = 388 (136.6 bits), Expect = 2.8e-37, Sum P(3) = 2.8e-37
  =>sp|P30415|NKCR_MOUSE NK-TUMOR RECOGNITION PROTEIN (NATURAL-KILLER CELLS
            CYCLOPHILIN-RELATED PROTEIN) (NK-TR PROTEIN)
            Length = 1466
	    Score = 388 (136.6 bits), Expect = 3.3e-37, Sum P(3) = 3.3e-37
  =>pir||B47328 natural killer cell tumor-recognition protein - mouse
            Length = 1507
	    Score = 388 (136.6 bits), Expect = 3.7e-37, Sum P(3) = 3.7e-37
  =>gi|3044089 (AF055990) cyclophilin [Fucus distichus]
            Length = 112
	    Score = 398 (140.1 bits), Expect = 2.6e-36, P = 2.6e-36
  =>gi|1000521 (U10322) cyclophilin [Plasmodium falciparum]
            Length = 210
	    Score = 393 (138.3 bits), Expect = 8.8e-36, P = 8.8e-36
  =>gi|1314810 (U55771) cyclophilin homolog Ta cyp [Theileria annulata]
            Length = 196
	    Score = 393 (138.3 bits), Expect = 8.8e-36, P = 8.8e-36
  =>sp|P35176|CYPD_YEAST PEPTIDYL-PROLYL CIS-TRANS ISOMERASE D PRECURSOR (PPIASE)
            (ROTAMASE) (CYCLOPHILIN D) >pir||S38324 peptidylprolyl isomerase
            (EC 5.2.1.8) D precursor - yeast (Saccharomyces cerevisiae)
            >gi|402654 (X73142) CYPD gene product [Saccharomyces cerevisiae]
            >gi|849221 (U28374) Cyp5p: peptidyl-prolyl cis-trans isomerase D
            (Swiss Prot. accession number P35176 [Saccharomyces cerevisiae]
            Length = 225
	    Score = 391 (137.6 bits), Expect = 1.4e-35, P = 1.4e-35
  =>gi|1490551 (U63545) natural killer tumor recognition protein [Mus musculus]
            Length = 258
	    Score = 388 (136.6 bits), Expect = 3.0e-35, P = 3.0e-35
  =>sp|P23285|CYPB_YEAST PEPTIDYL-PROLYL CIS-TRANS ISOMERASE B PRECURSOR (PPIASE)
            (ROTAMASE) (CYCLOPHILIN B) (CYCLOPHILIN-RELATED PROTEIN)
            >pir||S12324 peptidylprolyl isomerase (EC 5.2.1.8) 2 - yeast
            (Saccharomyces cerevisiae) >gi|487955 (U00061) Cyp2p:
            Peptidyl-prolyl cis-trans isomerase B [Saccharomyces cerevisiae]
            Length = 205
	    Score = 384 (135.2 bits), Expect = 7.9e-35, P = 7.9e-35
  =>gnl|PID|e32235 (X51497) cyclophilin-related protein [Saccharomyces cerevisiae]
            Length = 206
	    Score = 384 (135.2 bits), Expect = 7.9e-35, P = 7.9e-35
  =>pdb|1A58|  Cyclophilin From Brugia Malayi Isomerase, Ppiase Mol_id: 1;
            Molecule: Cyclophilin; Chain: Null; Fragment: Cyclophilin Domain;
            Engineered: Mbp Fusion >pdb|1A33|  Peptidylprolyl Isomerase,
            Cyclophilin-Like Domain From Brugia Malayi Isomerase,
            Peptidyl-Prolyl Cis-Trans, Peptidylprolyl Isomerase Mol_id: 1;
            Molecule: Peptidylprolyl Isomerase; Chain: Null; Fragment:
            Cyclophilin-Like Domain; Ec:...
            Length = 177
	    Score = 378 (133.1 bits), Expect = 3.4e-34, P = 3.4e-34
  =>gnl|PID|e280557 (Y09143) cyclophilin [Lumbricus rubellus]
            Length = 223
	    Score = 372 (131.0 bits), Expect = 1.5e-33, P = 1.5e-33
  =>gnl|PID|e1254653 (AL022023) cyclophilin - like protein [Arabidopsis thaliana]
            Length = 224
	    Score = 370 (130.2 bits), Expect = 2.4e-33, P = 2.4e-33
  =>sp|P15425|CYPR_DROME PEPTIDYL-PROLYL CIS-TRANS ISOMERASE, RHODOPSIN SPECIFIC
            ISOZYME PRECURSOR (PPIASE) (ROTAMASE) >pir||CYFFBE peptidylprolyl
            isomerase (EC 5.2.1.8) B, eye-specific, precursor - fruit fly
            (Drosophila melanogaster) >gi|157961 (M22851) cyclosporine A
            binding protein [Drosophila melanogaster] >gnl|PID|e1290481
            (X14769) ninaA [Drosophila melanogaster] >prf||1505369A ninaA gene
            [Drosophila melanogaster]
            Length = 237
	    Score = 353 (124.3 bits), Expect = 1.5e-31, P = 1.5e-31
  =>gi|474404 (Z32674) cyclophilin [Tolypocladium niveum]
           Length = 180
	    Score = 265 (93.3 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
  =>sp|P28517|CYPR_CALVI PEPTIDYL-PROLYL CIS-TRANS ISOMERASE, RHODOPSIN SPECIFIC
            ISOZYME PRECURSOR (PPIASE) (ROTAMASE)
            Length = 234
	    Score = 352 (123.9 bits), Expect = 1.9e-31, P = 1.9e-31
  =>sp|P87051|YDJ3_SCHPO PROBABLE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE C57A10.03
            >gnl|PID|e313994 (Z94864) unknown [Schizosaccharomyces pombe]
            Length = 155
	    Score = 350 (123.2 bits), Expect = 3.2e-31, P = 3.2e-31
  =>gi|1330343 (U58755) C34D4.12 gene product [Caenorhabditis elegans]
            Length = 169
	    Score = 340 (119.7 bits), Expect = 3.6e-30, P = 3.6e-30
  =>gi|971608 (F14780) peptidyl-prolyl cis-trans isomerase [Sus scrofa]
           Length = 85
	    Score = 338 (119.0 bits), Expect = 5.9e-30, P = 5.9e-30
  =>sp|Q09637|CYP9_CAEEL PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 (PPIASE) (ROTAMASE)
            (CYCLOPHILIN-9) >gi|1185450 (U36581) cyclophilin isoform 9
            [Caenorhabditis elegans] >gi|2262220 (U95074) cyclophilin isoform 9
            [Caenorhabditis elegans]
            Length = 309
	    Score = 330 (116.2 bits), Expect = 4.2e-29, P = 4.2e-29
  =>gnl|PID|d1008136 (D38552) The ha1539 protein is related to cyclophilin. [Homo
            sapiens]
            Length = 645
	    Score = 305 (107.4 bits), Expect = 1.3e-25, P = 1.3e-25
  =>sp|Q09928|YAL5_SCHPO PROBABLE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE C21E11.05C
            >pir||S62590 hypothetical protein SPAC21E11.05c - fission yeast
            (Schizosaccharomyces pombe) >gi|1067221 (Z67999) peptidyl-prolyl
            cis-trans isomerase [Schizosaccharomyces pombe]
            Length = 471
	    Score = 271 (95.4 bits), Expect = 2.8e-25, Sum P(2) = 2.8e-25
  =>gi|1199600 (U37220) cyclophilin-like protein [Homo sapiens]
            Length = 282
	    Score = 291 (102.4 bits), Expect = 5.6e-25, P = 5.6e-25
  =>gi|1199602 (U37221) cyclophilin-like protein [Homo sapiens]
            Length = 311
	    Score = 291 (102.4 bits), Expect = 5.6e-25, P = 5.6e-25
  =>pir||S64705 cyclophilin-like protein CyP-60 - human >gi|1199598 (U37219)
            cyclophilin-like protein CyP-60 [Homo sapiens] >prf||2207180A
            cyclophilin:ISOTYPE=CyP-60 [Homo sapiens]
            Length = 520
	    Score = 291 (102.4 bits), Expect = 2.1e-24, P = 2.1e-24
  =>gi|2988417 (U97573) peptidyl-prolyl cis-trans isomerase [Treponema pallidum]
            >gi|3323269 (AE001263) peptidyl-prolyl cis-trans isomerase,
            cyclophilin-binding (cyp) [Treponema pallidum]
            Length = 215
	    Score = 282 (99.3 bits), Expect = 5.1e-24, P = 5.1e-24
  =>gi|2995585 (AE001274) PPCTIB; cyclophilin B; L2759.1 [Leishmania major]
            Length = 335
	    Score = 226 (79.6 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
  =>sp|P52012|CYP4_CAEEL PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 4 (PPIASE) (ROTAMASE)
            (CYCLOPHILIN-4)
            Length = 269
	    Score = 275 (96.8 bits), Expect = 2.8e-23, P = 2.8e-23
  =>gnl|PID|e1294518 (AL023704) peptidyl prolyl cis/trans isomerase
            [Schizosaccharomyces pombe]
            Length = 610
	    Score = 280 (98.6 bits), Expect = 5.7e-23, P = 5.7e-23
  =>gi|2981639 (U36187) cyclophilin isoform 4 [Caenorhabditis elegans]
            Length = 523
	    Score = 275 (96.8 bits), Expect = 1.3e-22, P = 1.3e-22
  =>gnl|PID|d1025140 (AB002414) cyclophilin-type peptidyl-prolyl cis-trans
            isomerase [Halobacterium cutirubrum]
            Length = 180
	    Score = 225 (79.2 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
  =>sp|P52017|CYPA_CAEEL PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 10 (PPIASE)
            (ROTAMASE) (CYCLOPHILIN-10) >gi|733577 (U23453) similar to
            peptidyl-prolyl cis-trans isomerase (PPIASE) (CYCLOPHILIN)
            [Caenorhabditis elegans] >gi|1155225 (U34954) cyclophilin isoform
            10 [Caenorhabditis elegans]
            Length = 147
	    Score = 261 (91.9 bits), Expect = 8.5e-22, P = 8.5e-22
  =>gnl|PID|e284969 (Z48245) T27D1.1 [Caenorhabditis elegans]
            Length = 271
	    Score = 251 (88.4 bits), Expect = 9.8e-21, P = 9.8e-21
  =>gi|1575509 (U64692) cyclophilin ScCypB [Streptomyces chrysomallus]
            Length = 175
	    Score = 244 (85.9 bits), Expect = 5.4e-20, P = 5.4e-20
  =>gi|576953 (Z46688) peptidyl prolyl cis-trans isomerase [Arabidopsis thaliana]
           Length = 66
	    Score = 240 (84.5 bits), Expect = 1.4e-19, P = 1.4e-19
  =>gi|3057040 (AF000668) cyclophilin Dicyp-3 [Dirofilaria immitis]
            Length = 527
	    Score = 243 (85.5 bits), Expect = 4.1e-19, P = 4.1e-19
  =>gi|443954 (Z14081) cyclophilin [Nicotiana tabacum]
           Length = 56
	    Score = 230 (81.0 bits), Expect = 1.6e-18, P = 1.6e-18
  =>sp|P47103|CYP7_YEAST PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP7 (PPIASE)
            (ROTAMASE) >pir||S57050 hypothetical protein YJR032w - yeast
            (Saccharomyces cerevisiae) >gi|1015677 (Z49532) ORF YJR032w
            [Saccharomyces cerevisiae] >gi|1129166 (X87297) J1585 gene product
            [Saccharomyces cerevisiae]
            Length = 393
	    Score = 149 (52.5 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
  =>gi|1515350 (U48868) Cpr7p [Saccharomyces cerevisiae]
            Length = 393
	    Score = 149 (52.5 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
  =>pir||S45372 peptidylprolyl isomerase (EC 5.2.1.8) - common tobacco (fragment)
            Length = 56
	    Score = 225 (79.2 bits), Expect = 5.6e-18, P = 5.6e-18
  =>sp|P35137|CYPB_BACSU PEPTIDYL-PROLYL CIS-TRANS ISOMERASE B (PPIASE B)
            (ROTAMASE B) >pir||S45537 peptidylprolyl isomerase (EC 5.2.1.8) -
            Bacillus subtilis >gi|410119 (L09228) peptidyl-prolyl isomerase
            [Bacillus subtilis] >gi|580848 (X73898) cis-trans isomerase
            [Bacillus subtilis] >gnl|PID|e1185605 (Z99116) peptidyl-prolyl
            isomerase [Bacillus subtilis]
            Length = 143
	    Score = 220 (77.4 bits), Expect = 1.9e-17, P = 1.9e-17
  =>sp|P71578|CYPI_MYCTU PROBABLE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE)
            (ROTAMASE) >gnl|PID|e266928 (Z80233) ppiA [Mycobacterium
            tuberculosis]
            Length = 182
	    Score = 215 (75.7 bits), Expect = 7.1e-17, P = 7.1e-17
  =>pir||CSRT31 protein P31 - rat >prf||1112143A protein P31 [Rattus norvegicus]
            Length = 121
	    Score = 213 (75.0 bits), Expect = 1.2e-16, P = 1.2e-16
  =>gi|2622445 (AE000897) peptidyl-prolyl cis-trans isomerase B [Methanobacterium
            thermoautotrophicum]
            Length = 141
	    Score = 203 (71.5 bits), Expect = 1.9e-15, P = 1.9e-15
  =>sp|P29820|CYPH_SYNP7 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE) (ROTAMASE)
            >pir||CSYC42 peptidylprolyl isomerase (EC 5.2.1.8) - Synechococcus
            sp. (PCC 7942) >gi|46489 (X65028) peptidylprolyl isomerase
            [Synechococcus sp. (PCC 7942)] >prf||1909375A peptidyl Pro
            cis-trans isomerase [Synechococcus sp.]
            Length = 145
	    Score = 202 (71.1 bits), Expect = 2.5e-15, P = 2.5e-15
  =>gi|972055 (F14628) cyclophilin B [Sus scrofa]
           Length = 87
	    Score = 192 (67.6 bits), Expect = 3.6e-14, P = 3.6e-14
  =>gi|2314613 (AE000644) peptidyl-prolyl cis-trans isomerase B, cyclosporin-type
            rotamase (ppi) [Helicobacter pylori]
            Length = 163
	    Score = 192 (67.6 bits), Expect = 3.6e-14, P = 3.6e-14
  =>gnl|PID|e1298303 (AL023828) Y17G7B.h [Caenorhabditis elegans]
            Length = 763
	    Score = 206 (72.5 bits), Expect = 9.8e-14, Sum P(2) = 9.8e-14
  =>gnl|PID|e1263915 (AL022104) peptidyl-prolyl cis-trans isomerase
            [Schizosaccharomyces pombe]
            Length = 463
	    Score = 196 (69.0 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
  =>gnl|PID|e236568 (X97255) cyclophilin [Digitalis lanata]
            Length = 62
	    Score = 183 (64.4 bits), Expect = 3.8e-13, P = 3.8e-13
  =>gi|1066992 (Z36949) F59E10.2 [Caenorhabditis elegans]
            Length = 378
	    Score = 193 (67.9 bits), Expect = 3.2e-12, P = 3.2e-12
  =>gi|16994 (Z17785) peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana]
          Length = 53
	    Score = 173 (60.9 bits), Expect = 5.1e-12, P = 5.1e-12
  =>gnl|PID|e1315509 (Z97628) Similarity to Brugia peptidylprolyl isomerase
            (TR:G984562) [Caenorhabditis elegans]
            Length = 381
	    Score = 188 (66.2 bits), Expect = 1.3e-11, P = 1.3e-11
  =>sp|P42693|CYPH_ACICA PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PRECURSOR (PPIASE)
            (ROTAMASE) >pir||S50205 peptidyl prolyl-cis-trans-isomerase,
            rotamase - Acinetobacter calcoaceticus >gi|602782 (X74839) peptidyl
            prolyl-cis-trans-isomerase, rotamase [Acinetobacter calcoaceticus]
            Length = 188
	    Score = 165 (58.1 bits), Expect = 4.0e-11, P = 4.0e-11
  =>gi|2961458 (U91923) unknown [Mus musculus]
            Length = 73
	    Score = 161 (56.7 bits), Expect = 1.1e-10, P = 1.1e-10
  =>gi|602789 (Z46935) F59E10.2 [Caenorhabditis elegans]
           Length = 179
	    Score = 160 (56.3 bits), Expect = 1.4e-10, P = 1.4e-10
  =>gnl|PID|d1008233 (D42050) BST-PPIase [Bacillus stearothermophilus]
            Length = 167
	    Score = 157 (55.3 bits), Expect = 3.1e-10, P = 3.1e-10
  =>sp|P25334|CYPR_YEAST PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PRECURSOR (PPIASE)
            (ROTAMASE) >pir||CSBYC3 peptidylprolyl isomerase (EC 5.2.1.8) SCC3
            - yeast (Saccharomyces cerevisiae) >gnl|PID|e264553 (X59720)
            YCR069w, len:318 [Saccharomyces cerevisiae]
            Length = 318
	    Score = 173 (60.9 bits), Expect = 4.2e-10, P = 4.2e-10
  =>gi|972057 (F14629) NK-tumor recognition protein [Sus scrofa]
           Length = 142
	    Score = 149 (52.5 bits), Expect = 2.4e-09, P = 2.4e-09
  =>pir||S21218 peptidylprolyl isomerase (EC 5.2.1.8), 22K - rat (fragments)
            Length = 87
	    Score = 86 (30.3 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
  =>pir||S49314 cyclophilin - Legionella pneumophila >gi|633236 (X83769)
            cyclophilin [Legionella pneumophila]
            Length = 164
	    Score = 144 (50.7 bits), Expect = 8.5e-09, P = 8.5e-09
  =>gnl|PID|e1245738 (AL021411) peptidylprolyl isomerase [Streptomyces coelicolor]
            Length = 157
	    Score = 143 (50.3 bits), Expect = 1.1e-08, P = 1.1e-08
  =>pdb|1CLH|  Cyclophilin (Nmr, 12 Structures)
            Length = 166
	    Score = 132 (46.5 bits), Expect = 1.8e-07, P = 1.8e-07
  =>sp|P23869|CYPB_ECOLI PEPTIDYL-PROLYL CIS-TRANS ISOMERASE B (PPIASE B)
            (ROTAMASE B) >pdb|2NUL|  Peptidylprolyl Isomerase From E. Coli
            Isomerase, Rotamase Mol_id: 1; Molecule: Peptidylprolyl Isomerase;
            Chain: Null; Synonym: Peptidylprolyl Cis-Trans Isomerase,
            Cyclophilin; Ec: 5.2.1.8 >gi|1786736 (AE000158) peptidyl-prolyl
            cis-trans isomerase B [Escherichia coli]
            Length = 164
	    Score = 129 (45.4 bits), Expect = 3.8e-07, P = 3.8e-07
  =>gi|147052 (M32354) protein of unknown function (utu) [Escherichia coli]
           Length = 154
	    Score = 128 (45.1 bits), Expect = 4.9e-07, P = 4.9e-07
  =>gnl|PID|e284719 (Z37139) T27D1.1 [Caenorhabditis elegans]
            Length = 71
	    Score = 126 (44.4 bits), Expect = 8.2e-07, P = 8.2e-07
  =>sp|O53021|CYPH_ERWCH PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A PRECURSOR (PPIASE
            A) (ROTAMASE A) (CYCLOPHILIN A) >gnl|PID|e291031 (Y09804)
            peptidylprolyl cis-trans isomerase [Erwinia chrysanthemi]
            Length = 190
	    Score = 134 (47.2 bits), Expect = 8.6e-07, P = 8.6e-07
  =>sp|P20753|CYPH_SALTY PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A (PPIASE A)
            (ROTAMASE A)
            Length = 154
	    Score = 125 (44.0 bits), Expect = 1.0e-06, P = 1.0e-06
  =>gi|2327017 (U82823) putative peptidyl-prolyl cis-trans isomerase
            [Saccharopolyspora erythraea]
            Length = 157
	    Score = 124 (43.7 bits), Expect = 1.3e-06, P = 1.3e-06
  =>pir||CSECB peptidylprolyl isomerase (EC 5.2.1.8) B - Escherichia coli
            >pdb|1LOP|A Escherichia coli >gi|145290 (M55430) peptidyl-prolyl
            cis-trans isomerase b [Escherichia coli]
            Length = 164
	    Score = 123 (43.3 bits), Expect = 1.7e-06, P = 1.7e-06
  =>sp|P20752|CYPH_ECOLI PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A PRECURSOR (PPIASE
            A) (ROTAMASE A) (CYCLOPHILIN A) >pir||CSECA peptidylprolyl
            isomerase (EC 5.2.1.8) A precursor - Escherichia coli >gi|145287
            (M55429) peptidyl-prolyl cis-trans isomerase a [Escherichia coli]
            >gi|145954 (M28363) ORF190 [Escherichia coli] >gi|606297 (U18997)
            peptidyl-prolyl cis-trans isomerase a [Escherichia coli]
            >gi|1789763 (AE000412) peptidyl-prolyl cis-trans isomerase a
            [Escherichia coli]
            Length = 190
	    Score = 132 (46.5 bits), Expect = 2.0e-06, P = 2.0e-06
  =>gnl|PID|d1017444 (D90900) peptidyl-prolyl cis-trans isomerase B [Synechocystis
            sp.]
            Length = 246
	    Score = 92 (32.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
  =>sp|P46697|CYPH_MYCLE PROBABLE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE)
            (ROTAMASE) >pir||S72749 peptidyl-proyl cis-trans isomerase homolog
            cypH - Mycobacterium leprae >gi|466838 (U00011) cypH; B1177_F3_97
            [Mycobacterium leprae] >gnl|PID|e1293270 (AL023591) peptidyl-prolyl
            cis-trans isomerase [Mycobacterium leprae]
            Length = 295
	    Score = 132 (46.5 bits), Expect = 2.1e-05, P = 2.1e-05
  =>gi|3184556 (AF052290) peptidyl-prolyl cis-trans isomerase B [Synechococcus
            PCC7002]
            Length = 256
	    Score = 105 (37.0 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
  =>sp|P44499|CYPB_HAEIN PEPTIDYL-PROLYL CIS-TRANS ISOMERASE B (PPIASE B)
            (ROTAMASE B) >pir||D64047 peptidyl-prolyl cis-trans isomerase B
            (ppiB) homolog - Haemophilus influenzae (strain Rd KW20)
            >gi|1573027 (U32693) peptidyl-prolyl cis-trans isomerase B (ppiB)
            [Haemophilus influenzae Rd]
            Length = 169
	    Score = 120 (42.2 bits), Expect = 2.2e-05, P = 2.2e-05
  =>sp|Q50639|CYPH_MYCTU PROBABLE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE)
            (ROTAMASE) >gnl|PID|e256148 (Z77724) ppiB [Mycobacterium
            tuberculosis]
            Length = 308
	    Score = 132 (46.5 bits), Expect = 2.3e-05, P = 2.3e-05
  =>bbs|124894 PPI-III=peptidyl prolyl cis-trans isomerase component
            [Saccharomyces cerevisiae, Peptide Partial, 43 aa]
            Length = 43
	    Score = 110 (38.7 bits), Expect = 4.6e-05, P = 4.6e-05
  =>gi|2275210 (AC002337) peptidyl-prolyl cis-trans isomerase isolog [Arabidopsis
            thaliana]
            Length = 230
	    Score = 123 (43.3 bits), Expect = 0.00011, P = 0.00011
  =>gnl|PID|e322048 (Z81080) F39H2.2 [Caenorhabditis elegans]
            Length = 313
	    Score = 121 (42.6 bits), Expect = 0.00042, P = 0.00042
  =>sp|Q59641|CYPH_PSEAE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIASE) (ROTAMASE)
            (CYCLOPHILIN) >gi|840840 (X84050) peptidylprolyl isomerase
            [Pseudomonas aeruginosa]
            Length = 154
	    Score = 105 (37.0 bits), Expect = 0.0018, P = 0.0018
  =>gnl|PID|e349669 (Z99292) hypothetical protein [Schizosaccharomyces pombe]
            Length = 300
	    Score = 79 (27.8 bits), Expect = 0.0023, Sum P(2) = 0.0023
  =>pir||S54841 peptidylprolyl isomerase (EC 5.2.1.8) - Pseudomonas aeruginosa
            (fragment)
            Length = 153
	    Score = 104 (36.6 bits), Expect = 0.0025, P = 0.0025
  =>pir||S45724 peptidylprolyl isomerase (EC 5.2.1.8) B - bovine (fragment)
            Length = 46
	    Score = 91 (32.0 bits), Expect = 0.0054, P = 0.0054
  =>gi|41205 (X59293) peptidyl-prolyl cis-transisomerase like ORF [Escherichia
          coli]
          Length = 68
	    Score = 90 (31.7 bits), Expect = 0.0070, P = 0.0070
  =>bbs|169644 17 kda cyclophilin A {internal fragment} [human, first trimester
            decidual and placental tissue, Peptide Partial, 29 aa]
            Length = 29
	    Score = 89 (31.3 bits), Expect = 0.0089, P = 0.0089
  =>pir||A56814 superinducible protein 24 - mouse (fragments)
            Length = 38
	    Score = 89 (31.3 bits), Expect = 0.0089, P = 0.0089
  =>sp|P36043|YKU1_YEAST 64.6 KD PROTEIN IN TOR2-PAS1 INTERGENIC REGION
            >pir||S38038 hypothetical protein YKL201c - yeast (Saccharomyces
            cerevisiae)
            Length = 539
	    Score = 109 (38.4 bits), Expect = 0.023, P = 0.023
  =>gnl|PID|e1283519 (Z28201) ORF YKL201c [Saccharomyces cerevisiae]
            Length = 660
	    Score = 109 (38.4 bits), Expect = 0.030, P = 0.030
  =>gi|3158469 (AF067216) No definition line found [Caenorhabditis elegans]
            Length = 301
	    Score = 104 (36.6 bits), Expect = 0.033, P = 0.033
  =>sp|Q28092|CYL2_BOVIN CYLICIN II (MULTIPLE-BAND POLYPEPTIDE II) >pir||I46014
            cylicin II - bovine >gi|757754 (Z46789) cylicin II [Bos taurus]
            Length = 488
	    Score = 106 (37.3 bits), Expect = 0.043, P = 0.043
  =>gnl|PID|d1012343 (D83006) gene required for phosphoylation of
            oligosaccharides/ has high homology with YJR061w [Saccharomyces
            cerevisiae]
            Length = 1178
	    Score = 109 (38.4 bits), Expect = 0.061, P = 0.059
  =>gi|3329623 (AF078790) No definition line found [Caenorhabditis elegans]
            Length = 335
	    Score = 101 (35.6 bits), Expect = 0.088, P = 0.084
  =>gi|786117 (L41834) nuclear protein [Ensis minor]
           Length = 505
	    Score = 103 (36.3 bits), Expect = 0.098, P = 0.093

>CcruzaQ_28 has the following protein neighbors:
Sequence,   
  =>gi|717163 (U22048) Trypanosoma brucei putative RNA binding protein tbRRM1
           gene, complete cds. [Trypanosoma brucei brucei]
           Length = 435
	    Score = 203 (71.5 bits), Expect = 3.0e-13, P = 3.0e-13
  =>gnl|PID|e349078 (Z36948) D2089.1 [Caenorhabditis elegans]
            Length = 353
	    Score = 162 (57.0 bits), Expect = 1.1e-08, P = 1.1e-08
  =>pir||S56117 spermatid-specific protein T2 precursor - longfin squid
            Length = 118
	    Score = 128 (45.1 bits), Expect = 4.9e-07, P = 4.9e-07
  =>gnl|PID|e250378 (Z75546) R05D11.7 [Caenorhabditis elegans]
            Length = 155
	    Score = 122 (42.9 bits), Expect = 2.2e-06, P = 2.2e-06
  =>gi|431953 (X76302) nucleic acid binding protein [Homo sapiens]
           Length = 163
	    Score = 121 (42.6 bits), Expect = 2.9e-06, P = 2.9e-06
  =>gnl|PID|e276445 (Z81264) nuclear protein [Sus scrofa]
            Length = 124
	    Score = 119 (41.9 bits), Expect = 4.8e-06, P = 4.8e-06
  =>gi|602023 (X06814) hU1-70K protein (234 AA) [Homo sapiens]
           Length = 233
	    Score = 134 (47.2 bits), Expect = 5.5e-06, P = 5.5e-06
  =>gi|2828710 (AF043642) matrin cyclophilin [Rattus norvegicus]
            Length = 752
	    Score = 143 (50.3 bits), Expect = 6.1e-06, P = 6.1e-06
  =>pir||S04336 U1 snRNP 70K protein (long form) - mouse (fragment) >gi|763157
            (X15769) U1RNA-associated 70-kDa protein [Mus musculus]
            Length = 378
	    Score = 129 (45.4 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
  =>pir||A57514 RNA helicase HEL117 - rat >gi|897915 (U25746) RNA helicase [Rattus
            norvegicus]
            Length = 1032
	    Score = 143 (50.3 bits), Expect = 9.2e-06, P = 9.2e-06
  =>gi|825727 (X07401) hU1-70K protein (286 AA) [Homo sapiens]
           Length = 285
	    Score = 134 (47.2 bits), Expect = 1.1e-05, P = 1.1e-05
  =>gi|602021 (X06812) hU1-70K protein (302 AA) [Homo sapiens]
           Length = 301
	    Score = 134 (47.2 bits), Expect = 1.3e-05, P = 1.3e-05
  =>gi|3135267 (AC003058) hypothetical protein [Arabidopsis thaliana]
            Length = 102
	    Score = 115 (40.5 bits), Expect = 1.3e-05, P = 1.3e-05
  =>gi|337445 (M57939) ribonucleoprotein antigen [Homo sapiens]
           Length = 428
	    Score = 136 (47.9 bits), Expect = 1.6e-05, P = 1.6e-05
  =>pir||A40988 54K arginine-rich nuclear protein - human >gi|178997 (M74002)
            arginine-rich nuclear protein [Homo sapiens]
            Length = 484
	    Score = 119 (41.9 bits), Expect = 0.0015, P = 0.0015
  =>gi|1465838 (U64857) No definition line found [Caenorhabditis elegans]
            Length = 470
	    Score = 130 (45.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
  =>sp|P30352|SC35_CHICK SPLICING FACTOR SC35 (SC-35) (SPLICING COMPONENT, 35 KD)
            (PR264 PROTEIN) (SPLICING FACTOR, ARGININE/SERINE-RICH, 2)
            >pir||B42701 PR264 protein - chicken >gi|63752 (X62446) PR 264
            [Gallus gallus] >prf||1805195A RNA-binding protein PR264 [Gallus
            gallus]
            Length = 221
	    Score = 128 (45.1 bits), Expect = 2.3e-05, P = 2.3e-05
  =>gi|337444 (M57939) ribonucleoprotein antigen [Homo sapiens] >gi|337447
           (M22636) small ribonucleoprotein 70 kd protein [Homo sapiens]
           >gi|683580 (X84841) 68 kDa (U1) ribonucleoprotein [Homo sapiens]
           Length = 437
	    Score = 134 (47.2 bits), Expect = 2.8e-05, P = 2.8e-05
  =>sp|Q09167|CL4_RAT INSULIN-INDUCED GROWTH RESPONSE PROTEIN CL-4 (DELAYED-EARLY
            PROTEIN HRS) >pir||B47112 growth response protein HRS,
            insulin-induced - rat >gi|349079 (L13635) growth response protein
            [Rattus rattus]
            Length = 269
	    Score = 129 (45.4 bits), Expect = 3.6e-05, P = 3.6e-05
  =>pir||A42701 PR264/SC35 protein - human >gi|35597 (X62447) PR 264 [Homo
            sapiens] >gi|455419 (X75755) PR264/SC35 [Homo sapiens] >gi|3335676
            (AF077858) splicing factor SC35 [Mus musculus] >prf||1805195B
            RNA-binding protein PR264 [Homo sapiens]
            Length = 221
	    Score = 126 (44.4 bits), Expect = 4.1e-05, P = 4.1e-05
  =>sp|Q01130|SC35_HUMAN SPLICING FACTOR SC35 (SC-35) (SPLICING COMPONENT, 35 KD)
            (PR264 PROTEIN) (SPLICING FACTOR, ARGININE/SERINE-RICH, 2)
            >pir||A42634 splicing factor SC35 - human >gi|337926 (M90104)
            splicing factor [Homo sapiens]
            Length = 221
	    Score = 126 (44.4 bits), Expect = 4.1e-05, P = 4.1e-05
  =>sp|P17133|RU17_DROME U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD (U1 SNRNP 70 KD)
            (SNRP70) >pir||A36311 70K U1 small nuclear ribonucleoprotein -
            fruit fly (Drosophila melanogaster) >gi|158315 (M31162) U1 70K
            small nuclear ribonucleoprotein,  (first expressed exon)
            [Drosophila melanogaster]
            Length = 448
	    Score = 124 (43.7 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
  =>sp|P08621|RU17_HUMAN U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD (U1 SNRNP 70 KD)
            (SNRP70) >pir||A25707 U1 snRNP 70K protein - human >gi|36100
            (X04654) 70 K protein (AA 1-614) [Homo sapiens]
            Length = 614
	    Score = 134 (47.2 bits), Expect = 4.7e-05, P = 4.7e-05
  =>gnl|PID|e250202 (Z75539) F28C1.1 [Caenorhabditis elegans]
            Length = 695
	    Score = 134 (47.2 bits), Expect = 5.5e-05, P = 5.5e-05
  =>sp|P42151|HSP1_SARHA SPERM PROTAMINE P1 >gi|598379 (L35324) protamine P1
            [Sarcophilus harrisii] >gi|2352881 (AF010276) protamine P1
            [Dasyurus maculatus]
            Length = 62
	    Score = 109 (38.4 bits), Expect = 5.9e-05, P = 5.9e-05
  =>sp|P42135|HSP1_DASVI SPERM PROTAMINE P1 >gi|598103 (L35340) protamine P1
            [Dasyurus viverrinus] >gi|598105 (L35341) protamine P1 [Dasyurus
            hallucatus] >prf||2117429T protamine P1 [Dasyurus hallucatus]
            Length = 61
	    Score = 109 (38.4 bits), Expect = 5.9e-05, P = 5.9e-05
  =>pir||S59042 splicing factor SRp40 - human >gi|1049080 (U30826) SRp40-1 [Homo
            sapiens]
            Length = 272
	    Score = 127 (44.7 bits), Expect = 6.3e-05, P = 6.3e-05
  =>gnl|PID|e237170 (Z71262) F22D6.5 [Caenorhabditis elegans]
            Length = 775
	    Score = 129 (45.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
  =>gi|495083 (L33267) putative [Rattus norvegicus]
           Length = 85
	    Score = 105 (37.0 bits), Expect = 0.00016, P = 0.00016
  =>bbs|169646 protamine [Monodonta turbinata, gonads, Peptide, 106 aa]
            Length = 106
	    Score = 105 (37.0 bits), Expect = 0.00016, P = 0.00016
  =>gi|1006629 (X91751) UL6 protein [Bovine herpesvirus 1]
            Length = 162
	    Score = 113 (39.8 bits), Expect = 0.00017, P = 0.00017
  =>sp|P42131|HSP1_CAEFU SPERM PROTAMINE P1 >gi|598099 (L35332) protamine P1
            [Caenolestes fuliginosus]
            Length = 61
	    Score = 104 (36.6 bits), Expect = 0.00021, P = 0.00021
  =>sp|P42130|HSP1_ANTSW SPERM PROTAMINE P1 >gi|598065 (L35338) protamine P1
            [Antechinus swainsonii] >gi|598343 (L35339) protamine P1
            [Phascolosorex dorsalis] >gi|2352863 (AF010267) protamine P1
            [Neophascogale lorentzii] >gi|2352873 (AF010272) protamine P1
            [Dasyurus albopunctatus] >gi|2352875 (AF010273) protamine P1
            [Dasyurus viverrinus] >gi|2352877 (AF010274) protamine P1 [Dasyurus
            geoffroii] >gi|2352879 (AF010275) protamine P1 [Dasyurus spartacus]
            Length = 62
	    Score = 104 (36.6 bits), Expect = 0.00021, P = 0.00021
  =>gi|786117 (L41834) nuclear protein [Ensis minor]
           Length = 505
	    Score = 127 (44.7 bits), Expect = 0.00021, P = 0.00021
  =>gi|2702458 (AF038619) No definition line found [Caenorhabditis elegans]
            Length = 444
	    Score = 126 (44.4 bits), Expect = 0.00022, P = 0.00022
  =>sp|P11596|TRSF_DROME FEMALE-SPECIFIC TRANSFORMER PROTEIN >pir||A29648
            female-specific transformer protein - fruit fly (Drosophila
            melanogaster) >gi|158550 (M17478) transformer protein [Drosophila
            melanogaster] >gi|304813 (L19464) transformer protein [Drosophila
            melanogaster] >gi|304815 (L19465) transformer protein [Drosophila
            melanogaster] >gi|304817 (L19466) transformer protein [Drosophila
            melanogaster] >gi|304819 (L19467) transformer protein [Drosophila
            melanogaster] >gi|304821 (L19468) transformer protein [Drosophila
            melanogaster] >gi|304823 (L19469) transformer protein [Drosophila
            melanogaster] >gi|304825 (L19470) transformer protein [Drosophila
            melanogaster] >gi|304827 (L19618) transformer protein [Drosophila
            melanogaster] >gi|304829 (L19619) transformer protein [Drosophila
            melanogaster] >gi|304831 (L19620) transformer protein [Drosophila
            melanogaster]
            Length = 197
	    Score = 118 (41.5 bits), Expect = 0.00023, P = 0.00023
  =>gi|529704 (U13070) similar to RNA helicases [Caenorhabditis elegans]
           Length = 701
	    Score = 122 (42.9 bits), Expect = 0.00023, Sum P(3) = 0.00023
  =>sp|P42137|HSP1_MACAG SPERM PROTAMINE P1 >gi|598425 (L35451) protamine P1
            [Macropus agilis] >prf||2117429K protamine P1 [Macropus agilis]
            Length = 61
	    Score = 103 (36.3 bits), Expect = 0.00027, P = 0.00027
  =>gi|2435503 (AF020308) HRS [Mus musculus]
            Length = 270
	    Score = 121 (42.6 bits), Expect = 0.00030, P = 0.00030
  =>bbs|169196 T2=testis-specific pro-protamine [Loligo pealeii=squids, testis
            chromatin, Peptide, 79 aa]
            Length = 79
	    Score = 102 (35.9 bits), Expect = 0.00034, P = 0.00034
  =>sp|P42138|HSP1_MACEU SPERM PROTAMINE P1 >gi|598423 (L35450) protamine P1
            [Macropus eugenii] >prf||2117429J protamine P1 [Macropus eugenii]
            Length = 62
	    Score = 102 (35.9 bits), Expect = 0.00034, P = 0.00034
  =>gi|1117968 (U40763) CARS-Cyp [Homo sapiens] >gnl|PID|e268465 (X99717) SRcyp
            protein [Homo sapiens]
            Length = 754
	    Score = 127 (44.7 bits), Expect = 0.00037, P = 0.00037
  =>sp|P42152|HSP1_TRIVU SPERM PROTAMINE P1 >gi|548332 (L32744) protamine P1
            [Trichosurus vulpecula] >prf||2117429P protamine P1 [Trichosurus
            vulpecula]
            Length = 62
	    Score = 101 (35.6 bits), Expect = 0.00044, P = 0.00044
  =>sp|P42141|HSP1_MACRG SPERM PROTAMINE P1 >gi|598417 (L35328) protamine P1
            [Wallabia bicolor] >gi|598421 (L35329) protamine P1 [Macropus
            rufogriseus] >prf||2117429L protamine P1 [Macropus rufogriseus]
            >prf||2117429M protamine P1 [Wallabia bicolor]
            Length = 62
	    Score = 101 (35.6 bits), Expect = 0.00044, P = 0.00044
  =>prf||2117429C protamine P1 [Caenolestes fuliginosus]
            Length = 61
	    Score = 101 (35.6 bits), Expect = 0.00044, P = 0.00044
  =>sp|P42140|HSP1_MURLO SPERM PROTAMINE P1 >gi|548319 (L32743) protamine P1
            [Sminthopsis crassicaudata] >gi|598334 (L35336) protamine P1
            [Murexia longicaudata] >gi|598353 (L35327) protamine P1 [Phascogale
            tapoatafa] >gi|2149543 (U87139) protamine P1 [Myrmecobius
            fasciatus] >gi|2149545 (U87140) protamine P1 [Thylacinus
            cynocephalus] >gi|2330915 (AF001585) protamine P1 [Sminthopsis
            murina] >gi|2330917 (AF001586) protamine P1 [Sminthopsis macroura]
            >gi|2330921 (AF001588) protamine P1 [Ningaui ridei] >gi|2330923
            (AF001589) protamine P1 [Ningaui yvonnae] >gi|2330925 (AF001590)
            protamine P1 [Ningaui timealeyi] >gi|2330927 (AF001591) protamine
            P1 [Planigale maculata maculata] >gi|2352869 (AF010270) protamine
            P1 [Dasycercus cristicauda] >gi|3098366 (AF038291) protamine P1
            [Antechinus swainsonii] >gi|3098368 (AF038292) protamine P1
            [Antechinus stuartii] >gi|3098370 (AF038293) protamine P1
            [Antechinus flavipes] >gi|3098372 (AF038294) protamine P1
            [Antechinus minimus] >gi|3098374 (AF038295) protamine P1
            [Antechinus bellus] >gi|3098376 (AF038296) protamine P1 [Antechinus
            godmani] >gi|3098378 (AF038297) protamine P1 [Antechinus leo]
            >gi|3098380 (AF038298) protamine P1 [Antechinus sp.] >gi|3098382
            (AF038299) protamine P1 [Antechinus melanurus] >gi|3098384
            (AF038300) protamine P1 [Antechinus habbema] >gi|3098386 (AF038301)
            protamine P1 [Antechinus naso] >gi|3098388 (AF038302) protamine P1
            [Murexia rothschildi] >gi|3098390 (AF038303) protamine P1
            [Phascogale calura] >prf||2117429R protamine P1 [Sminthopsis
            crassicaudata]
            Length = 63
	    Score = 100 (35.2 bits), Expect = 0.00057, P = 0.00057
  =>sp|O18745|HSP1_ANTLA SPERM PROTAMINE P1 >gi|2330919 (AF001587) protamine P1
            [Antechinomys laniger]
            Length = 62
	    Score = 100 (35.2 bits), Expect = 0.00057, P = 0.00057
  =>prf||2117429N protamine P1 [Pseudochirops cupreus]
            Length = 62
	    Score = 99 (34.8 bits), Expect = 0.00073, P = 0.00073
  =>sp|P42139|HSP1_MACGI SPERM PROTAMINE P1 >gi|598419 (L35333) protamine P1
            [Macropus giganteus] >prf||2117429H protamine P1 [Macropus
            giganteus]
            Length = 61
	    Score = 99 (34.8 bits), Expect = 0.00073, P = 0.00073
  =>sp|P24728|VPHE_NPVAC POLYHEDRAL ENVELOPE PROTEIN (PE) (POLYHEDRAL CALYX
            PROTEIN) >pir||C43679 ORF3 protein - Autographa californica nuclear
            polyhedrosis virus >gi|559200 (L22858) polyhedral calyx protein
            [Autographa californica nuclear polyhedrosis virus] >gi|808750
            (M17548) unknown protein [Autographa californica nuclear
            polyhedrosis virus]
            Length = 252
	    Score = 117 (41.2 bits), Expect = 0.00073, P = 0.00073
  =>sp|P06921|VE2_HPV05 REGULATORY PROTEIN E2 >gi|484218 (M17463) regulatory
            protein [Human papillomavirus type 5]
            Length = 514
	    Score = 122 (42.9 bits), Expect = 0.00078, P = 0.00078
  =>sp|P42129|HSP1_ANTST SPERM PROTAMINE P1 >gi|598063 (L35335) protamine P1
            [Antechinus stuartii]
            Length = 64
	    Score = 98 (34.5 bits), Expect = 0.00094, P = 0.00094
  =>sp|P09406|RU17_XENLA U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD (U1 SNRNP 70 KD)
            >pir||S02016 U1 snRNP 70K protein - African clawed frog >gi|65179
            (X12430) U1 70K [Xenopus laevis]
            Length = 471
	    Score = 120 (42.2 bits), Expect = 0.0011, P = 0.0011
  =>sp|P35305|HSP1_DIDMA SPERM PROTAMINE P1 >pir||S34045 protamine - North
            American opossum >gi|294036 (L17007) protamine 1 [Didelphis
            marsupialis] >gi|407063 (X74044) protamine P1 [Didelphis
            marsupialis] >gi|598253 (L35448) protamine P1 [Monodelphis
            domestica] >prf||2117429A protamine P1 [Didelphis marsupialis]
            >prf||2117429B protamine P1 [Monodelphis domestica]
            Length = 58
	    Score = 97 (34.1 bits), Expect = 0.0012, P = 0.0012
  =>sp|P80001|PRT1_SEPOF SPERMATID-SPECIFIC PROTEIN T1 (CONTAINS: SPERM PROTAMINE
            SP1) >pir||A40973 spermatid-specific protein T1 - common cuttlefish
            >bbs|56648 spermatid-specific protein=variant T1 [cuttlefish,
            Peptide, 78 aa]
            Length = 78
	    Score = 97 (34.1 bits), Expect = 0.0012, P = 0.0012
  =>pir||S14085 protamine - common cuttlefish
            Length = 57
	    Score = 97 (34.1 bits), Expect = 0.0012, P = 0.0012
  =>sp|P80002|PRT2_SEPOF SPERMATID-SPECIFIC PROTEIN T2 (CONTAINS: SPERM PROTAMINE
            SP2) >pir||B40973 spermatid-specific protein T2 - common cuttlefish
            >bbs|56649 spermatid-specific protein=variant T2 [cuttlefish,
            Peptide, 77 aa]
            Length = 77
	    Score = 97 (34.1 bits), Expect = 0.0012, P = 0.0012
  =>pir||S14086 protamine - common cuttlefish
            Length = 56
	    Score = 97 (34.1 bits), Expect = 0.0012, P = 0.0012
  =>sp|P42134|HSP1_DASRO SPERM PROTAMINE P1 >gi|598101 (L35325) protamine P1
            [Dasykaluta rosamondae] >gi|598363 (L35337) protamine P1
            [Pseudantechinus macdonnellensis] >gi|598365 (L35326) protamine P1
            [Parantechinus apicalis] >gi|2352865 (AF010268) protamine P1
            [Myoictis melas] >gi|2352867 (AF010269) protamine P1 [Myoictis
            wallacei] >gi|2352871 (AF010271) protamine P1 [Dasyuroides byrnei]
            >gi|2352885 (AF010278) protamine P1 [Pseudantechinus ningbing]
            >gi|2352887 (AF010279) protamine P1 [Pseudantechinus woolleyae]
            Length = 63
	    Score = 97 (34.1 bits), Expect = 0.0012, P = 0.0012
  =>sp|O18768|HSP1_PARBI SPERM PROTAMINE P1 >gi|2352883 (AF010277) protamine P1
            [Parantechinus bilarni]
            Length = 62
	    Score = 97 (34.1 bits), Expect = 0.0012, P = 0.0012
  =>sp|P42132|HSP1_DROAU SPERM PROTAMINE P1 >gi|598111 (L35449) putative
            [Dromiciops australis] >prf||2117429D protamine P1 [Dromiciops
            gliroides]
            Length = 64
	    Score = 97 (34.1 bits), Expect = 0.0012, P = 0.0012
  =>pir||A33640 class III histocompatibility antigen RD - human >gi|386949
            (M33231) MHC HLA-RD protein [Homo sapiens]
            Length = 382
	    Score = 118 (41.5 bits), Expect = 0.0014, P = 0.0014
  =>gi|1825626 (U88170) C10G11.9 gene product [Caenorhabditis elegans]
            Length = 203
	    Score = 112 (39.4 bits), Expect = 0.0014, P = 0.0014
  =>sp|P42142|HSP1_MACRU SPERM PROTAMINE P1 >gi|598427 (L35447) protamine P1
            [Macropus rufus] >prf||2117429G protamine P1 [Macropus rufus]
            Length = 60
	    Score = 96 (33.8 bits), Expect = 0.0015, P = 0.0015
  =>pir||JH0189 arginine/aspartate-rich 37.3K protein - human >gi|35913 (X16105)
            RD protein (AA 1-325) [Homo sapiens]
            Length = 325
	    Score = 116 (40.8 bits), Expect = 0.0017, P = 0.0017
  =>gi|1044856 (Z66521) W02B12.3 [Caenorhabditis elegans]
            Length = 312
	    Score = 110 (38.7 bits), Expect = 0.0017, Sum P(2) = 0.0017
  =>gi|1825690 (U88180) T27A3.4 gene product [Caenorhabditis elegans]
            Length = 203
	    Score = 111 (39.1 bits), Expect = 0.0019, P = 0.0019
  =>pir||S56116 spermatid-specific protein T1 - longfin squid >bbs|169195
            T1=testis-specific pro-protamine [Loligo pealeii=squids, testis
            chromatin, Peptide, 79 aa]
            Length = 79
	    Score = 95 (33.4 bits), Expect = 0.0020, P = 0.0020
  =>sp|Q08170|SR75_HUMAN PRE-MRNA SPLICING FACTOR SRP75 >pir||A48133 pre-mRNA
            splicing SRp75 - human >gi|307438 (L14076) pre-mRNA splicing factor
            [Homo sapiens]
            Length = 494
	    Score = 118 (41.5 bits), Expect = 0.0021, P = 0.0021
  =>gnl|PID|d1009167 (D49708) RNA binding protein (transformer-2-like) [Rattus
            norvegicus] >gnl|PID|e223601 (X80232) SIG41 [Mus musculus]
            >gi|1418286 (U61267) htra2-beta [Homo sapiens] >gi|1553035 (U68063)
            transformer-2 beta [Homo sapiens]
            Length = 288
	    Score = 114 (40.1 bits), Expect = 0.0022, P = 0.0022
  =>sp|P18615|RDP_HUMAN RD PROTEIN >pir||S36789 gene RD protein - human >gi|190974
            (L03411) RD protein [Homo sapiens] >gi|2347135 (AF019413) RD [Homo
            sapiens]
            Length = 380
	    Score = 116 (40.8 bits), Expect = 0.0023, P = 0.0022
  =>sp|P52016|CYP8_CAEEL PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 8 (PPIASE) (ROTAMASE)
            (CYCLOPHILIN-8) >gi|1072171 (U40938) coded for by C. elegans cDNA
            CEESF41R;  contains a cyclophilin-like PPIase domain
            [Caenorhabditis elegans] >gi|1185432 (U31078) cyclophilin isoform 8
            [Caenorhabditis elegans]
            Length = 466
	    Score = 117 (41.2 bits), Expect = 0.0024, P = 0.0024
  =>sp|O18746|HSP1_PLAMS SPERM PROTAMINE P1 >gi|2330929 (AF001592) protamine P1
            [Planigale maculata sinualis]
            Length = 62
	    Score = 94 (33.1 bits), Expect = 0.0026, P = 0.0026
  =>gi|1205976 (U14172) p162 protein [Mus musculus]
            Length = 1344
	    Score = 122 (42.9 bits), Expect = 0.0026, P = 0.0026
  =>sp|Q24669|TRSF_DROSI FEMALE-SPECIFIC TRANSFORMER PROTEIN >pir||S26046
            sex-determining protein transformer - fruit fly (Drosophila
            simulans) >gi|9144 (X66930) transformer (tra) gene product
            [Drosophila simulans]
            Length = 184
	    Score = 108 (38.0 bits), Expect = 0.0028, P = 0.0028
  =>gi|733604 (U23484) similar to splicing factor S35 (SP:SC35_HUMAN, Q01130) and
           other proteins necessary for splicing of pre-mRNA [Caenorhabditis
           elegans]
           Length = 196
	    Score = 109 (38.4 bits), Expect = 0.0028, P = 0.0028
  =>sp|Q09530|YQO5_CAEEL PUTATIVE ATP-DEPENDENT RNA HELICASE EEED8.5 IN CHROMOSOME
            II >gi|733602 (U23484) similar to S. cerevisiae pre-mRNA splicing
            factor RNA helicase PRP22 (SP:PR22_YEAST, P24384) and other DEAH
            subfamily members of the DEAD box family helicases [Caenorhabditis
            elegans]
            Length = 1200
	    Score = 121 (42.6 bits), Expect = 0.0030, P = 0.0030
  =>gnl|PID|d1026392 (AB011108) KIAA0536 protein [Homo sapiens]
            Length = 1028
	    Score = 120 (42.2 bits), Expect = 0.0032, P = 0.0032
  =>gi|1086592 (U41007) similar to pre-mRNA splicing factor SRP20 [Caenorhabditis
            elegans]
            Length = 179
	    Score = 107 (37.7 bits), Expect = 0.0032, P = 0.0032
  =>sp|P79990|HSP1_PHACI SPERM PROTAMINE P1 >gi|1850518 (U87789) protamine P1
            [Phascolarctos cinereus] >prf||2117429U protamine P1 [Phascolarctos
            cinereus]
            Length = 60
	    Score = 93 (32.7 bits), Expect = 0.0033, P = 0.0033
  =>pir||PN0099 son3 protein - human (fragment) >gi|338290 (M36428) son3 protein
            [Homo sapiens]
            Length = 483
	    Score = 116 (40.8 bits), Expect = 0.0033, P = 0.0033
  =>pir||A55335 myelin regulatory factor 1 - mouse (fragment)
            Length = 274
	    Score = 112 (39.4 bits), Expect = 0.0034, P = 0.0034
  =>gi|555924 (U14648) putative myelin regulatory factor 1; MRF-1 [Mus musculus]
           Length = 283
	    Score = 112 (39.4 bits), Expect = 0.0036, P = 0.0036
  =>sp|P06422|VE2_HPV08 REGULATORY PROTEIN E2 >pir||W2WL8 E2 protein - human
            papillomavirus type 8
            Length = 498
	    Score = 115 (40.5 bits), Expect = 0.0045, P = 0.0045
  =>sp|Q14562|DDX8_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE HRH1 (DEAH BOX
            PROTEIN 8) >pir||A56236 probable RNA helicase 1 - human
            >gnl|PID|d1009713 (D50487) RNA helicase (HRH1) [Homo sapiens]
            Length = 1220
	    Score = 119 (41.9 bits), Expect = 0.0050, P = 0.0050
  =>gi|1280134 (U55376) F16H11.2 gene product [Caenorhabditis elegans]
            Length = 57
	    Score = 91 (32.0 bits), Expect = 0.0054, P = 0.0054
  =>gi|1806632 (U83842) this protein is predicted to have 25 dipeptide repeats as
            a result of a 6 bp deletion compared to the H-2k haplotype [Mus
            musculus]
            Length = 50
	    Score = 91 (32.0 bits), Expect = 0.0054, P = 0.0054
  =>sp|Q15696|U2R2_HUMAN U2 SMALL NUCLEAR RIBONUCLEOPROTEIN AUXILIARY FACTOR 35 KD
            SUBUNIT RELATED-PROTEIN 2 >gnl|PID|d1009144 (D49677) U2AF1-RS2
            [Homo sapiens]
            Length = 482
	    Score = 114 (40.1 bits), Expect = 0.0055, P = 0.0055
  =>sp|P50766|VE2_HPV20 REGULATORY PROTEIN E2 >gi|1020166 (U31778) regulatory
            protein E2 [Human papillomavirus type 20]
            Length = 497
	    Score = 114 (40.1 bits), Expect = 0.0057, P = 0.0057
  =>pir||S53640 protein kinase clk3-152 (EC 2.7.1.-) - human >gi|632970 (L29220)
            clk3-152; putative [Homo sapiens]
            Length = 152
	    Score = 101 (35.6 bits), Expect = 0.0066, P = 0.0066
  =>sp|Q06666|T2_MOUSE OCTAPEPTIDE-REPEAT PROTEIN T2 >gi|296382 (X67863) T2 [Mus
            musculus]
            Length = 185
	    Score = 105 (37.0 bits), Expect = 0.0068, P = 0.0068
  =>gnl|PID|e349508 (Z99281) Y57G11C.9 [Caenorhabditis elegans]
            Length = 568
	    Score = 114 (40.1 bits), Expect = 0.0069, P = 0.0069
  =>sp|P41726|BVCP_GVCL DNA-BINDING PROTEIN (ARGININE RICH PROTEIN 7.3 KD) (BASIC
            VIRAL CORE PROTEIN) (NUCLEOCAPSID PROTEIN) >gi|515334 (X77048) p7.3
            [Cryptophlebia leucotreta granulosis virus]
            Length = 58
	    Score = 90 (31.7 bits), Expect = 0.0070, P = 0.0070
  =>sp|P15340|HSP_CHICK SPERM HISTONE (PROTAMINE) (GALLINE) >pir||A34326 protamine
            - chicken >gi|609436 (L38713) protamine [Gallus gallus] >gi|609437
            (M28100) protamine [Gallus gallus]
            Length = 62
	    Score = 90 (31.7 bits), Expect = 0.0070, P = 0.0070
  =>sp|P19426|RDP_MOUSE RD PROTEIN (WL623) >pir||A40112 MHC-region RD-repeat
            protein - mouse >gi|199608 (M21332) 42 kd polypeptide (RD),  (first
            expressed exon) [Mus musculus]
            Length = 375
	    Score = 111 (39.1 bits), Expect = 0.0080, P = 0.0080
  =>gi|2854157 (AF045641) similar to the "DEAD" box family of helicases (Pfam;
            DEAD, score; 303.01) [Caenorhabditis elegans]
            Length = 646
	    Score = 114 (40.1 bits), Expect = 0.0083, P = 0.0082
  =>gi|2317711 (AF011564) splicing factor SRp55 homolog [Oryctolagus cuniculus]
            Length = 81
	    Score = 89 (31.3 bits), Expect = 0.0090, P = 0.0089
  =>gnl|PID|e1298628 (AL023860) hypothetical protein [Schizosaccharomyces pombe]
            Length = 706
	    Score = 114 (40.1 bits), Expect = 0.0093, P = 0.0092
  =>gi|1710361 (U79145) splicing factor U2AF65 [Caenorhabditis briggsae]
            Length = 488
	    Score = 112 (39.4 bits), Expect = 0.0094, P = 0.0093
  =>sp|P50809|VE2_HPV36 REGULATORY PROTEIN E2 >gi|1020222 (U31785) regulatory
            protein E2 [Human papillomavirus type 36]
            Length = 509
	    Score = 113 (39.8 bits), Expect = 0.0095, Sum P(2) = 0.0094
  =>sp|Q23935|TRSF_DROER FEMALE-SPECIFIC TRANSFORMER PROTEIN >pir||S26044
            sex-determining protein transformer - fruit fly (Drosophila erecta)
            >gi|7410 (X66527) transformer (tra) gene gene product [Drosophila
            erecta]
            Length = 178
	    Score = 103 (36.3 bits), Expect = 0.010, P = 0.010
  =>gi|3005587 (AF048977) Ser/Arg-related nuclear matrix protein [Homo sapiens]
            Length = 820
	    Score = 110 (38.7 bits), Expect = 0.010, Sum P(2) = 0.010
  =>gi|3236351 (AF033663) PRP4 protein kinase homolog [Mus musculus]
            Length = 823
	    Score = 114 (40.1 bits), Expect = 0.011, P = 0.011
  =>gnl|PID|d1032606 (AB014570) KIAA0670 protein [Homo sapiens]
            Length = 1280
	    Score = 116 (40.8 bits), Expect = 0.011, P = 0.011
  =>sp|P54705|SNWA_DICDI SNWA PROTEIN >gi|1165314 (U43887) unknown [Dictyostelium
            discoideum]
            Length = 685
	    Score = 113 (39.8 bits), Expect = 0.011, P = 0.011
  =>gi|1707017 (U78721) RNA helicase isolog [Arabidopsis thaliana]
            Length = 733
	    Score = 113 (39.8 bits), Expect = 0.012, P = 0.012
  =>bbs|121049 (S50883) putative transcription regulator {clone T2} [mice,
            macrophage, Peptide, 225 aa]
            Length = 225
	    Score = 105 (37.0 bits), Expect = 0.013, P = 0.013
  =>gi|3153821 (AF062655) plenty-of-prolines-101; POP101; SH3-philo-protein [Mus
            musculus]
            Length = 897
	    Score = 108 (38.0 bits), Expect = 0.013, Sum P(2) = 0.013
  =>pir||I55595 splicing factor - human >gi|405192 (L10910) splicing factor [Homo
            sapiens]
            Length = 524
	    Score = 111 (39.1 bits), Expect = 0.013, P = 0.013
  =>gi|405194 (L10911) splicing factor [Homo sapiens]
           Length = 530
	    Score = 111 (39.1 bits), Expect = 0.014, P = 0.013
  =>sp|P18583|SON_HUMAN SON PROTEIN (SON3) >gi|36546 (X63753) son-a [Homo sapiens]
            Length = 1523
	    Score = 116 (40.8 bits), Expect = 0.014, P = 0.014
  =>gnl|PID|e235469 (Z70718) C04G2.8 [Caenorhabditis elegans]
            Length = 197
	    Score = 103 (36.3 bits), Expect = 0.015, P = 0.015
  =>gnl|PID|d1012147 (D79986) similar to human DNA-binding protein 5. [Homo
            sapiens]
            Length = 920
	    Score = 113 (39.8 bits), Expect = 0.017, P = 0.016
  =>gi|1938464 (U97006) No definition line found [Caenorhabditis elegans]
            Length = 222
	    Score = 104 (36.6 bits), Expect = 0.017, P = 0.017
  =>gnl|PID|e198124 (Z54163) hnRNP protein [Chironomus tentans]
            Length = 322
	    Score = 107 (37.7 bits), Expect = 0.017, P = 0.017
  =>gnl|PID|e229183 (Z70204) C11G6.3 [Caenorhabditis elegans]
            Length = 385
	    Score = 108 (38.0 bits), Expect = 0.018, P = 0.018
  =>sp|P42143|HSP1_NOTTY SPERM PROTAMINE P1 >gi|598338 (L35446) protamine P1
            [Notoryctes typhlops] >prf||2117429Q protamine P1 [Notoryctes
            typhlops]
            Length = 61
	    Score = 86 (30.3 bits), Expect = 0.019, P = 0.019

>CcruzaQ_1099 has the following protein neighbors:
Sequence,   
  =>gi|2529685 (AC002535) putative dimethyladenosine transferase [Arabidopsis
            thaliana]
            Length = 353
	    Score = 387 (136.2 bits), Expect = 2.4e-41, Sum P(2) = 2.4e-41
  =>sp|P41819|DIM1_YEAST DIMETHYLADENOSINE TRANSFERASE (S-ADENOSYLMETHIONINE-6-N',
            N'-ADENOSYL(RRNA) DIMETHYLTRANSFERASE) (18S RRNA DIMETHYLASE)
            >pir||S47985 rRNA (adenine-N6,N6-)-dimethyltransferase (EC 2.1.1.-)
            DIM1 - yeast (Saccharomyces cerevisiae) >gi|601876 (L26480)
            dimethyladenosine transferase [Saccharomyces cerevisiae]
            >gnl|PID|e246972 (Z73622) ORF YPL266w [Saccharomyces cerevisiae]
            Length = 318
	    Score = 369 (129.9 bits), Expect = 8.0e-39, Sum P(2) = 8.0e-39
  =>sp|P78697|DIM1_KLULA DIMETHYLADENOSINE TRANSFERASE (S-ADENOSYLMETHIONINE-6-N',
            N'-ADENOSYL(RRNA) DIMETHYLTRANSFERASE) (18S RRNA DIMETHYLASE)
            Length = 320
	    Score = 361 (127.1 bits), Expect = 2.1e-38, Sum P(2) = 2.1e-38
  =>gnl|PID|e214702 (Z68294) dimethylase [Kluyveromyces lactis]
            Length = 320
	    Score = 358 (126.0 bits), Expect = 4.4e-38, Sum P(2) = 4.4e-38
  =>sp|Q09522|YQN1_CAEEL HYPOTHETICAL 34.1 KD PROTEIN E02H1.1 IN CHROMOSOME II
            >gnl|PID|e348619 (Z47075) E02H1.1 [Caenorhabditis elegans]
            Length = 304
	    Score = 303 (106.7 bits), Expect = 3.0e-26, P = 3.0e-26
  =>gi|2648762 (AE000979) dimethyladenosine transferase (ksgA) [Archaeoglobus
            fulgidus]
            Length = 244
	    Score = 186 (65.5 bits), Expect = 1.7e-13, P = 1.7e-13
  =>gnl|PID|d1028927 (AB009526) 290aa long hypothetical dimethyladenosine
            transferase [Pyrococcus horikoshii] >gnl|PID|d1031885 (AP000007)
            290aa long hypothetical dimethyladenosine transferase [Pyrococcus
            horikoshii]
            Length = 290
	    Score = 182 (64.1 bits), Expect = 2.0e-11, P = 2.0e-11
  =>gnl|PID|d1017401 (D90899) dimethyladenosine transferase [Synechocystis sp.]
            Length = 284
	    Score = 157 (55.3 bits), Expect = 2.1e-08, P = 2.1e-08
  =>gi|2622432 (AE000896) dimethyladenosine transferase [Methanobacterium
            thermoautotrophicum]
            Length = 273
	    Score = 151 (53.2 bits), Expect = 9.5e-08, P = 9.5e-08
  =>pir||D64428 dimethyladenosine transferase - Methanococcus jannaschii
            >gi|1591684 (U67545) dimethyladenosine transferase (ksgA)
            [Methanococcus jannaschii]
            Length = 275
	    Score = 144 (50.7 bits), Expect = 6.6e-07, P = 6.6e-07
  =>gnl|PID|e307817 (Y11786) dimethyladenosine transferase [Rickettsia prowazekii]
            Length = 268
	    Score = 138 (48.6 bits), Expect = 3.0e-06, P = 3.0e-06
  =>sp|P06992|KSGA_ECOLI DIMETHYLADENOSINE TRANSFERASE (S-ADENOSYLMETHIONINE-6-N',
            N'-ADENOSYL(RRNA) DIMETHYLTRANSFERASE) (16S RRNA DIMETHYLASE) (HIGH
            LEVEL KASUGAMYCIN RESISTANCE PROTEIN KSGA) (KASUGAMYCIN
            DIMETHYLTRANSFERASE) >pir||XYECRO rRNA
            (adenine-N6,N6-)-dimethyltransferase (EC 2.1.1.-) - Escherichia
            coli >gi|40917 (X04711) put. 16S rRNA methyltransferase (ksgA) (AA
            1-273) [Escherichia coli] >gi|146571 (M11054) methyltransferase
            (ksgA) [Escherichia coli] >gnl|PID|d1001799 (D10483) rRNA
            (adenosine-N6,N6-)-dimethyltransferase [Escherichia coli]
            >gi|1786236 (AE000115) dimethyladenosine transferase [Escherichia
            coli] >prf||1112172A methyltransferase [Escherichia coli]
            Length = 273
	    Score = 127 (44.7 bits), Expect = 6.2e-05, P = 6.2e-05
  =>gi|2688507 (AE001160) dimethyladenosine transferase (ksgA) [Borrelia
            burgdorferi]
            Length = 281
	    Score = 126 (44.4 bits), Expect = 8.8e-05, P = 8.8e-05
  =>sp|P44749|KSGA_HAEIN DIMETHYLADENOSINE TRANSFERASE (S-ADENOSYLMETHIONINE-6-N',
            N'-ADENOSYL(RRNA) DIMETHYLTRANSFERASE) (16S RRNA DIMETHYLASE) (HIGH
            LEVEL KASUGAMYCIN RESISTANCE PROTEIN KSGA) (KASUGAMYCIN
            DIMETHYLTRANSFERASE) >pir||I64076 16S rRNA
            (adenosine-N6,N6-)-dimethyltransferase (ksgA) homolog - Haemophilus
            influenzae (strain Rd KW20) >gi|1573534 (U32736) dimethyladenosine
            transferase (ksgA) [Haemophilus influenzae Rd]
            Length = 287
	    Score = 126 (44.4 bits), Expect = 9.3e-05, P = 9.3e-05
  =>sp|P37468|KSGA_BACSU DIMETHYLADENOSINE TRANSFERASE (S-ADENOSYLMETHIONINE-6-N',
            N'-ADENOSYL(RRNA) DIMETHYLTRANSFERASE) (16S RRNA DIMETHYLASE) (HIGH
            LEVEL KASUGAMYCIN RESISTANCE PROTEIN KSGA) (KASUGAMYCIN
            DIMETHYLTRANSFERASE) >pir||S66071 high level kasgamycin resistance
            protein - Bacillus subtilis >gnl|PID|d1005819 (D26185) high level
            kasgamycin resistance [Bacillus subtilis] >gnl|PID|e1181975
            (Z99104) dimethyladenosine transferase [Bacillus subtilis]
            Length = 292
	    Score = 125 (44.0 bits), Expect = 0.00013, P = 0.00013
  =>sp|P47701|KSGA_MYCGE DIMETHYLADENOSINE TRANSFERASE (S-ADENOSYLMETHIONINE-6-N',
            N'-ADENOSYL(RRNA) DIMETHYLTRANSFERASE) (16S RRNA DIMETHYLASE) (HIGH
            LEVEL KASUGAMYCIN RESISTANCE PROTEIN KSGA) (KASUGAMYCIN
            DIMETHYLTRANSFERASE) >pir||B64251 high level kasgamycin resistance
            (ksgA) homolog - Mycoplasma genitalium (SGC3) >gi|1046183 (U39733)
            high level kasgamycin resistance [Mycoplasma genitalium]
            Length = 259
	    Score = 122 (42.9 bits), Expect = 0.00020, P = 0.00020
  =>gi|2314603 (AE000643) 16S rRNA (adenosine-N6,N6-)-dimethyltransferase (ksgA)
            [Helicobacter pylori]
            Length = 271
	    Score = 110 (38.7 bits), Expect = 0.0055, P = 0.0054
  =>gi|414445 (U01719) Homologous to Swiss-Prot Accession Number P06992, 16S rRNA
           methyltransferase [Mycoplasma genitalium]
           Length = 112
	    Score = 88 (31.0 bits), Expect = 0.011, P = 0.011
  =>pir||S42117 kasugamycin dimethyltransferase - Mycoplasma capricolum (SGC3)
            >gnl|PID|d1004140 (D14983) kasugamycin dimethyltransferase
            [Mycoplasma capricolum]
            Length = 204
	    Score = 102 (35.9 bits), Expect = 0.022, P = 0.022
  =>sp|P43038|KSGA_MYCCA DIMETHYLADENOSINE TRANSFERASE (S-ADENOSYLMETHIONINE-6-N',
            N'-ADENOSYL(RRNA) DIMETHYLTRANSFERASE) (16S RRNA DIMETHYLASE) (HIGH
            LEVEL KASUGAMYCIN RESISTANCE PROTEIN KSGA) (KASUGAMYCIN
            DIMETHYLTRANSFERASE)
            Length = 266
	    Score = 102 (35.9 bits), Expect = 0.043, P = 0.042
  =>pir||B21124 Bkm-like sex-determining region hypothetical protein CS314 - fruit
            fly (Drosophila melanogaster) (fragment)
            Length = 105
	    Score = 82 (28.9 bits), Expect = 0.051, P = 0.050

>CcruzaQ_1056 has the following protein neighbors:
Sequence,   
  =>gnl|PID|e275871 (Z81113) T03F6.3 [Caenorhabditis elegans]
            Length = 267
	    Score = 174 (61.3 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
  =>sp|Q64422|NAGH_MESAU PUTATIVE GLUCOSAMINE-6-PHOSPHATE ISOMERASE
            (GLUCOSAMINE-6-PHOSPHATE DEAMINASE) (OSCILLIN) >gi|1177525 (X94699)
            glucosamine-6-phosphate isomerase [Mesocricetus auratus]
            >prf||2204392A oscillin [Mesocricetus auratus]
            Length = 289
	    Score = 162 (57.0 bits), Expect = 7.5e-22, Sum P(2) = 7.5e-22
  =>sp|P46926|NAGH_HUMAN PUTATIVE GLUCOSAMINE-6-PHOSPHATE ISOMERASE
            (GLUCOSAMINE-6-PHOSPHATE DEAMINASE) (OSCILLIN) (KIAA0060)
            >gnl|PID|d1007115 (D31766) similar to E.coli N-acetylglucosamine
            transport protein. [Homo sapiens] >gi|2605949 (AF029914) oscillin
            [Homo sapiens] >gnl|PID|e1181741 (AJ002231) glucosamine-6-phosphate
            [Homo sapiens] >gi|2674175 (AF035809) oscillin [Homo sapiens]
            >gi|2935438 (AF048826) glucosamine-6-phosphate deaminase [Homo
            sapiens]
            Length = 289
	    Score = 158 (55.6 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
  =>sp|P44538|NAGB_HAEIN GLUCOSAMINE-6-PHOSPHATE ISOMERASE
            (GLUCOSAMINE-6-PHOSPHATE DEAMINASE) >pir||F64050
            glucosamine-6-phosphate deaminase protein (nagB) homolog -
            Haemophilus influenzae (strain Rd KW20) >gi|1573097 (U32700)
            glucosamine-6-phosphate isomerase (nagB) [Haemophilus influenzae
            Rd]
            Length = 270
	    Score = 146 (51.4 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
  =>sp|P09375|NAGB_ECOLI GLUCOSAMINE-6-PHOSPHATE ISOMERASE
            (GLUCOSAMINE-6-PHOSPHATE DEAMINASE) >pir||MUECNG probable
            glucosamine-6-phosphate isomerase (EC 5.3.1.10) - Escherichia coli
            >pdb|1HOR|A Escherichia coli >pdb|1HOR|B Escherichia coli
            >pdb|1DEA|A Escherichia coli >pdb|1DEA|B Escherichia coli
            >pdb|1HOT|A Escherichia coli >pdb|1HOT|B Escherichia coli
            >gi|455176 (M19284) glucosamine-6-phosphate deaminase protein
            [Escherichia coli] >gnl|PID|d1015177 (D90706)
            Glucosamine-6-phosphate isomerase (glucosamine- 6-phosphate
            deaminase) [Escherichia coli] >gnl|PID|d1015182 (D90707)
            Glucosamine-6-phosphate isomerase [Escherichia coli] >gi|1786893
            (AE000171) glucosamine-6-phosphate isomerase [Escherichia coli]
            Length = 266
	    Score = 149 (52.5 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
  =>pir||B37018 glucosamine-6-phosphate isomerase (EC 5.3.1.10) (nagB) -
            Escherichia coli >gi|3005594 (AF052007)
            N-acetylglucosamine-6-phosphate isomerase [Escherichia coli]
            Length = 266
	    Score = 149 (52.5 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
  =>sp|O30564|NAGB_BORBU GLUCOSAMINE-6-PHOSPHATE ISOMERASE
            (GLUCOSAMINE-6-PHOSPHATE DEAMINASE) >gi|2291110 (AF011226)
            glucosamine-6-phosphate isomerase [Borrelia burgdorferi]
            >gi|2688038 (AE001126) glucosamine-6-phosphate isomerase (nagB)
            [Borrelia burgdorferi]
            Length = 268
	    Score = 151 (53.2 bits), Expect = 8.7e-08, P = 8.7e-08
  =>sp|O31458|YBFT_BACSU HYPOTHETICAL 27.3 KD PROTEIN IN GLTP-CWLJ INTERGENIC
            REGION >gnl|PID|e1182188 (Z99105) similar to
            glucosamine-6-phosphate isomerase [Bacillus subtilis]
            Length = 249
	    Score = 122 (42.9 bits), Expect = 0.00018, P = 0.00018
  =>sp|Q04802|NAG1_CANAL GLUCOSAMINE-6-PHOSPHATE ISOMERASE
            (GLUCOSAMINE-6-PHOSPHATE DEAMINASE) >pir||A46652
            glucosamine-6-phosphate isomerase (EC 5.3.1.10) - yeast (Candida
            albicans) >gi|170886 (L07558) glucosamine-6-phosphate deaminase
            [Candida albicans]
            Length = 248
	    Score = 113 (39.8 bits), Expect = 0.0020, P = 0.0020
  =>sp|O35000|NAGB_BACSU GLUCOSAMINE-6-PHOSPHATE ISOMERASE
            (GLUCOSAMINE-6-PHOSPHATE DEAMINASE) >gi|2618855 (AF017113)
            glucosamine-6-P isomerase [Bacillus subtilis] >gnl|PID|e1186190
            (Z99121) N-acetylglucosamine-6-phosphate isomerase [Bacillus
            subtilis]
            Length = 242
	    Score = 110 (38.7 bits), Expect = 0.0041, P = 0.0041

>CcruzaQ_1300 has the following protein neighbors:
Sequence,   
  =>sp|Q03667|YMO2_YEAST HYPOTHETICAL 16.7 KD PROTEIN IN CDC5-MVP1 INTERGENIC
            REGION >pir||S53031 hypothetical protein YMR002w - yeast
            (Saccharomyces cerevisiae) >gi|728649 (Z48613) unknown
            [Saccharomyces cerevisiae]
            Length = 156
	    Score = 104 (36.6 bits), Expect = 0.0030, P = 0.0030

>CcruzaQ_1471 has the following protein neighbors:
Sequence,   
  =>gi|2981290 (AF005421) ribosomal protein S4 homolog [Trypanosoma cruzi]
            >gi|2981292 (AF005904) ribosomal protein S4 homolog [Trypanosoma
            cruzi]
            Length = 273
	    Score = 1342 (472.4 bits), Expect = 1.8e-140, Sum P(2) = 1.8e-140
  =>gi|3169289 (AF051136) ribosomal protein S4 X isoform [Monodelphis domestica]
            Length = 263
	    Score = 690 (242.9 bits), Expect = 2.9e-67, P = 2.9e-67
  =>sp|P47961|RS4_CRIGR 40S RIBOSOMAL PROTEIN S4 >gnl|PID|d1006027 (D26473)
            Ribosomal Protein [Cricetulus griseus]
            Length = 263
	    Score = 686 (241.5 bits), Expect = 7.8e-67, P = 7.8e-67
  =>gi|3169291 (AF051137) ribosomal protein S4 Y isoform [Monodelphis domestica]
            Length = 263
	    Score = 686 (241.5 bits), Expect = 7.8e-67, P = 7.8e-67
  =>pir||A53254 ribosomal protein S4 - human
            Length = 262
	    Score = 685 (241.1 bits), Expect = 1.0e-66, P = 1.0e-66
  =>sp|P12750|RS4_HUMAN 40S RIBOSOMAL PROTEIN S4, X ISOFORM (SINGLE COPY ABUNDANT
            MRNA PROTEIN) (SCR10) >pir||R3RT4 ribosomal protein S4 - rat
            >pir||R3HU4X ribosomal protein S4.X - human >pir||A55276 ribosomal
            protein S4 - western wild mouse >pir||I48169 ribosomal protein S4 -
            hamster (Mesocricetus sp.) >gi|57135 (X14210) ribosomal protein S4
            (AA 1 - 263) [Rattus rattus] >gi|200864 (M73436) ribosomal protein
            S4 [Mus musculus] >gnl|PID|d1002335 (D11087) ribosomal protein S4
            [Mesocricetus sp.] >gi|337510 (M58458) ribosomal protein S4X
            isoform [Homo sapiens] >gi|2791861 (AF041428) ribosomal protein s4
            X isoform [Homo sapiens]
            Length = 263
	    Score = 685 (241.1 bits), Expect = 1.0e-66, P = 1.0e-66
  =>pir||PC4159 ribosomal protein S4 - cat (fragment) >gi|950115 (U22232)
            ribosomal protein S4 [Felis catus]
            Length = 262
	    Score = 685 (241.1 bits), Expect = 1.0e-66, P = 1.0e-66
  =>sp|P47836|RS4_CHICK 40S RIBOSOMAL PROTEIN S4 >pir||A56537 ribosomal protein S4
            - chicken >gi|402296 (L24368) ribosomal protein S4 [Gallus gallus]
            Length = 263
	    Score = 684 (240.8 bits), Expect = 1.3e-66, P = 1.3e-66
  =>prf||1617101C ribosomal protein S4 [Rattus norvegicus]
            Length = 263
	    Score = 680 (239.4 bits), Expect = 3.4e-66, P = 3.4e-66
  =>sp|P46299|RS4_GOSHI 40S RIBOSOMAL PROTEIN S4 >pir||S45026 ribosomal protein S4
            - upland cotton >gi|488739 (X79300) ribosomal protein, small
            subunit 4e (RS4e) [Gossypium hirsutum]
            Length = 262
	    Score = 653 (229.9 bits), Expect = 9.4e-66, Sum P(2) = 9.4e-66
  =>gi|2262167 (AC002329) cytosolic ribosomal protein S4 [Arabidopsis thaliana]
            Length = 261
	    Score = 651 (229.2 bits), Expect = 1.5e-65, Sum P(2) = 1.5e-65
  =>sp|P46300|RS4_SOLTU 40S RIBOSOMAL PROTEIN S4 >pir||S47642 ribosomal protein S4
            - potato >gi|457803 (X76651) ribosomal protein S4 [Solanum
            tuberosum]
            Length = 264
	    Score = 649 (228.5 bits), Expect = 2.5e-65, Sum P(2) = 2.5e-65
  =>gi|2331301 (AF013487) ribosomal protein S4 type I [Zea mays]
            Length = 265
	    Score = 642 (226.0 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
  =>gi|2345154 (AF015522) ribsomal protein S4 [Zea mays]
            Length = 265
	    Score = 641 (225.6 bits), Expect = 1.7e-64, Sum P(2) = 1.7e-64
  =>sp|P41042|RS4_DROME 40S RIBOSOMAL PROTEIN S4 >pir||JN0871 ribosomal protein S4
            - fruit fly (Drosophila melanogaster) >gnl|PID|d1004302 (D16257)
            ribosomal protein S4 [Drosophila melanogaster]
            Length = 261
	    Score = 659 (232.0 bits), Expect = 5.7e-64, P = 5.7e-64
  =>gi|337930 (M22146) scar protein [Homo sapiens]
           Length = 244
	    Score = 652 (229.5 bits), Expect = 3.1e-63, P = 3.1e-63
  =>sp|P22090|RS4Y_HUMAN 40S RIBOSOMAL PROTEIN S4, Y ISOFORM >pir||R3HU4Y
            ribosomal protein S4.Y - human >gi|337512 (M58459) ribosomal
            protein S4Y isoform [Homo sapiens] >gi|2791859 (AF041427) ribosomal
            protein s4 Y isoform [Homo sapiens]
            Length = 263
	    Score = 650 (228.8 bits), Expect = 5.1e-63, P = 5.1e-63
  =>gi|2997729 (AF054511) ribosomal protein S7 [Yarrowia lipolytica]
            Length = 260
	    Score = 641 (225.6 bits), Expect = 4.6e-62, P = 4.6e-62
  =>sp|P05753|RS4E_YEAST 40S RIBOSOMAL PROTEIN S4 (S7) (YS6) (RP5) >pir||S20054
            ribosomal protein S4.e, cytosolic - yeast (Saccharomyces
            cerevisiae) >gi|172502 (M64293) ribosomal protein S7 [Saccharomyces
            cerevisiae] >gi|172504 (M64294) ribosomal protein S7 [Saccharomyces
            cerevisiae] >gi|1015892 (Z49645) ORF YJR145c [Saccharomyces
            cerevisiae] >gi|2347176 (U00030) Rps7ap: Ribosomal protein S7
            [Saccharomyces cerevisiae]
            Length = 261
	    Score = 629 (221.4 bits), Expect = 8.6e-61, P = 8.6e-61
  =>gnl|PID|e1293406 (AL023594) 40s ribosomal protein s4 type [Schizosaccharomyces
            pombe]
            Length = 262
	    Score = 622 (219.0 bits), Expect = 4.7e-60, P = 4.7e-60
  =>gi|3264763 (AF071891) 40S ribosomal protein S4 [Prunus armeniaca]
            Length = 261
	    Score = 594 (209.1 bits), Expect = 1.5e-59, Sum P(2) = 1.5e-59
  =>prf||2110340A ribosomal protein S7 [Tetrahymena thermophila]
            Length = 259
	    Score = 559 (196.8 bits), Expect = 2.8e-56, Sum P(2) = 2.8e-56
  =>sp|P47837|RS4E_CANAL 40S RIBOSOMAL PROTEIN S4 (S7) >gi|1051260 (U37009)
            ribosomal protein S7 [Candida albicans]
            Length = 262
	    Score = 578 (203.5 bits), Expect = 2.2e-55, P = 2.2e-55
  =>sp|P55832|RS4_HORSE 40S RIBOSOMAL PROTEIN S4
            Length = 194
	    Score = 547 (192.6 bits), Expect = 4.2e-52, P = 4.2e-52
  =>gnl|PID|d1009422 (D50104) ribosomal protein S4 [Macaca fuscata]
            >gnl|PID|d1009424 (D50106) ribosomal protein S4 [Felis catus]
            >gnl|PID|d1009426 (D50108) ribosomal protein S4 [Canis familiaris]
            >gnl|PID|d1009427 (D50109) ribosomal protein S4 [Equus caballus]
            >gnl|PID|d1009428 (D50110) ribosomal protein S4 [Sus scrofa]
            Length = 193
	    Score = 543 (191.1 bits), Expect = 1.1e-51, P = 1.1e-51
  =>gnl|PID|d1009425 (D50107) ribosomal protein S4 [Bos taurus]
            Length = 193
	    Score = 538 (189.4 bits), Expect = 3.8e-51, P = 3.8e-51
  =>sp|P49398|RS4_ORYSA 40S RIBOSOMAL PROTEIN S4 (SCAR PROTEIN SS620)
            >gnl|PID|e352610 (Y15009) ribosomal protein S4 [Oryza sativa]
            Length = 268
	    Score = 361 (127.1 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
  =>gnl|PID|d1009423 (D50105) Y-chromosome linked ribosomal protein S4 [Macaca
            fuscata]
            Length = 164
	    Score = 402 (141.5 bits), Expect = 9.7e-37, P = 9.7e-37
  =>gi|2621043 (AE000795) ribosomal protein S4 [Methanobacterium
            thermoautotrophicum]
            Length = 242
	    Score = 375 (132.0 bits), Expect = 7.1e-34, P = 7.1e-34
  =>gnl|PID|d1028870 (AB009525) 243aa long hypothetical 30S ribosomal protein S4
            [Pyrococcus horikoshii] >gnl|PID|d1031824 (AP000007) 243aa long
            hypothetical 30S ribosomal protein S4 [Pyrococcus horikoshii]
            Length = 243
	    Score = 366 (128.8 bits), Expect = 6.4e-33, P = 6.4e-33
  =>gi|17127 (Z17994) ribosomal protein S4 like [Arabidopsis thaliana]
          Length = 126
	    Score = 325 (114.4 bits), Expect = 2.9e-31, Sum P(2) = 2.9e-31
  =>sp||RS4_ARATH_1 [Segment 1 of 2] 40S RIBOSOMAL PROTEIN S4
            Length = 123
	    Score = 325 (114.4 bits), Expect = 2.9e-31, Sum P(2) = 2.9e-31
  =>sp|P54039|RS4E_METJA 30S RIBOSOMAL PROTEIN S4E >pir||D64358 ribosomal protein
            S4E - Methanococcus jannaschii >gi|1591170 (U67497) SSU ribosomal
            protein S4E [Methanococcus jannaschii]
            Length = 244
	    Score = 342 (120.4 bits), Expect = 2.2e-30, P = 2.2e-30
  =>sp|P14023|RS4E_METVA 30S RIBOSOMAL PROTEIN S4E (ORF C) >pir||R3MX4 ribosomal
            protein S4.eR - Methanococcus vannielii >gi|44760 (X16720) ORF c
            [Methanococcus vannielii]
            Length = 244
	    Score = 340 (119.7 bits), Expect = 3.6e-30, P = 3.6e-30
  =>gi|1216000 (F20029) ribosomal protein S4 variant [Arabidopsis thaliana]
            Length = 129
	    Score = 309 (108.8 bits), Expect = 7.0e-27, P = 7.0e-27
  =>gi|2648630 (AE000971) SSU ribosomal protein S4E (rps4E) [Archaeoglobus
            fulgidus]
            Length = 235
	    Score = 296 (104.2 bits), Expect = 1.7e-25, P = 1.7e-25
  =>sp|Q56230|RS4E_THEAC 30S RIBOSOMAL PROTEIN S4E >gi|1373335 (U57643) ribosomal
            protein s4e [Thermoplasma acidophilum]
            Length = 237
	    Score = 277 (97.5 bits), Expect = 1.7e-23, P = 1.7e-23
  =>pir||S62681 ribosomal protein YS7 homolog - Emericella nidulans
            Length = 116
	    Score = 266 (93.6 bits), Expect = 2.5e-22, P = 2.5e-22
  =>gnl|PID|e274817 (Y07778) ribosomal protein S4E [Sulfolobus acidocaldarius]
            Length = 244
	    Score = 249 (87.7 bits), Expect = 1.6e-20, P = 1.6e-20
  =>sp|P22510|RS4E_HALMA 30S RIBOSOMAL PROTEIN HS3 >pir||R3HS4 ribosomal protein
            S4.eR - Haloarcula marismortui >gi|43616 (X55311) ribosomal protein
            HS3 [Haloarcula marismortui]
            Length = 234
	    Score = 238 (83.8 bits), Expect = 2.3e-19, P = 2.3e-19
  =>gnl|PID|e316129 (Z95397) unknown [Schizosaccharomyces pombe]
            Length = 112
	    Score = 227 (79.9 bits), Expect = 3.4e-18, P = 3.4e-18
  =>sp|Q40941|RS4_PEDMI 40S RIBOSOMAL PROTEIN S4 >gi|1401207 (U58510) small
            subunit ribosomal protein 4 [Pedinomonas minutissima]
            Length = 242
	    Score = 226 (79.6 bits), Expect = 4.4e-18, P = 4.4e-18
  =>gi|2275282 (U97374) ribosomal protein S4 homolog [Schizosaccharomyces pombe]
            Length = 81
	    Score = 212 (74.6 bits), Expect = 1.3e-16, P = 1.3e-16
  =>gnl|PID|d1005500 (D25237) possible scar protein coding sequence [Oryza sativa]
            Length = 90
	    Score = 202 (71.1 bits), Expect = 1.9e-15, P = 1.9e-15
  =>gnl|PID|e236418 (Z70767) ribosomal protein S4 [Homo sapiens]
            Length = 59
	    Score = 189 (66.5 bits), Expect = 6.4e-14, P = 6.4e-14
  =>gi|473295 (Z32619) 40S ribosomal protein S4 [Arabidopsis thaliana]
           Length = 72
	    Score = 162 (57.0 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
  =>sp|P51405|RS4_DICDI 40S RIBOSOMAL PROTEIN S4 >gi|1001943 (U15424) ribosomal
            protein S4 [Dictyostelium discoideum]
            Length = 73
	    Score = 156 (54.9 bits), Expect = 3.6e-10, P = 3.6e-10
  =>gi|2275314 (U97390) 40S ribosomal protein S4 homolog [Schizosaccharomyces
            pombe]
            Length = 67
	    Score = 147 (51.7 bits), Expect = 3.6e-09, P = 3.6e-09
  =>sp||RS4_ARATH_2 [Segment 2 of 2] 40S RIBOSOMAL PROTEIN S4 >gi|473293 (Z32618)
            40S ribosomal protein S4 [Arabidopsis thaliana]
            Length = 65
	    Score = 145 (51.0 bits), Expect = 6.0e-09, P = 6.0e-09
  =>pir||S54762 ferredoxin-like protein phlG - Pseudomonas putida >gi|527553
            (X80765) ferredoxine [Pseudomonas putida]
            Length = 101
	    Score = 91 (32.0 bits), Expect = 0.0051, P = 0.0051
  =>gi|483484 (X79063) ferredoxin like protein [Pseudomonas putida] >prf||2104263G
           catechol dioxygenase [Pseudomonas putida]
           Length = 101
	    Score = 87 (30.6 bits), Expect = 0.014, P = 0.014
  =>pir||S24417 ferredoxiin-like protein dmpQ - Pseudomonas putida >gi|45688
            (X60657) dmpQ [Pseudomonas putida]
            Length = 112
	    Score = 82 (28.9 bits), Expect = 0.048, P = 0.047
  =>gi|1220469 (L13688) kfrA gene product [Plasmid R751]
            Length = 352
	    Score = 103 (36.3 bits), Expect = 0.053, P = 0.052

>CcruzaQ_1318 has the following protein neighbors:
Sequence,   
  =>gnl|PID|e1198443 (AJ001342) Putative S-phase-specific ribosomal protein
            [Arabidopsis thaliana] >gnl|PID|e1289581 (AL023094) Putative
            S-phase-specific ribosomal protein [Arabidopsis thaliana]
            Length = 262
	    Score = 271 (95.4 bits), Expect = 4.3e-49, Sum P(3) = 4.3e-49
  =>sp|P49396|RS3A_BRARA 40S RIBOSOMAL PROTEIN S3A (S PHASE SPECIFIC PROTEIN
            BIS289) >pir||S36622 hypothetical protein - turnip >gi|387909
            (L23553) S-phase-specific protein [Brassica rapa] >gi|397401
            (Z25769) putative product [Brassica rapa]
            Length = 262
	    Score = 262 (92.2 bits), Expect = 2.3e-48, Sum P(3) = 2.3e-48
  =>sp|P49397|RS3A_ORYSA 40S RIBOSOMAL PROTEIN S3A (CYC07 PROTEIN)
            >gnl|PID|d1005600 (D26060) cyc07 [Oryza sativa]
            Length = 262
	    Score = 257 (90.5 bits), Expect = 4.5e-46, Sum P(3) = 4.5e-46
  =>sp|P49198|RS3A_HELAN 40S RIBOSOMAL PROTEIN S3A >gi|469248 (L31645) ribosomal
            protein S3a [Helianthus annuus]
            Length = 260
	    Score = 241 (84.8 bits), Expect = 3.9e-45, Sum P(3) = 3.9e-45
  =>sp|P33444|RS3A_CATRO 40S RIBOSOMAL PROTEIN S3A (CYC07 PROTEIN)
            Length = 260
	    Score = 235 (82.7 bits), Expect = 2.1e-44, Sum P(3) = 2.1e-44
  =>pir||JQ0939 ribosomal protein S3a - Madagascar periwinkle >gnl|PID|d1001324
            (D01058) ORF [Catharanthus roseus]
            Length = 245
	    Score = 235 (82.7 bits), Expect = 3.4e-44, Sum P(3) = 3.4e-44
  =>gnl|PID|d1005598 (D26058) This gene is specifically expressed at the S phase
            during the cell cycle in the synchronous culture of periwinkle
            cells. [Catharanthus roseus]
            Length = 245
	    Score = 234 (82.4 bits), Expect = 3.4e-44, Sum P(3) = 3.4e-44
  =>gi|3063526 (AF052503) S-phase-specific ribosomal protein [Oryza sativa]
            Length = 261
	    Score = 223 (78.5 bits), Expect = 7.0e-44, Sum P(3) = 7.0e-44
  =>gi|2739184 (AF034971) ribosomal protein S3a [Drosophila melanogaster]
            Length = 268
	    Score = 278 (97.9 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
  =>sp|P49395|RS3A_APLCA 40S RIBOSOMAL PROTEIN S3A (LYSINE-RICH PROTEIN KRP-A)
            >pir||S43541 lysine-rich protein KRP-A - California sea hare
            >gi|471279 (X68555) KRP-A [Aplysia californica]
            Length = 265
	    Score = 284 (100.0 bits), Expect = 9.6e-31, Sum P(2) = 9.6e-31
  =>gi|2792508 (AF042107) ribosomal protein S3a [Eimeria tenella]
            Length = 264
	    Score = 278 (97.9 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
  =>sp|P49241|RS3A_HUMAN 40S RIBOSOMAL PROTEIN S3A >pir||JC4662 ribosomal protein
            S3a - human >gi|182775 (M84711) v-fos transformation effector
            protein [Homo sapiens] >gi|292447 (M77234) ribosomal protein S3a
            [Homo sapiens] >gi|854179 (X87373) ribosomal protein S3a [Homo
            sapiens]
            Length = 264
	    Score = 277 (97.5 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
  =>pir||PC4158 ribosomal protein S3a - cat (fragment) >gi|950113 (U22231)
            ribosomal protein S3a [Felis catus]
            Length = 260
	    Score = 277 (97.5 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
  =>gi|306553 (L13802) ribosmal protein small subunit [Homo sapiens]
           Length = 264
	    Score = 277 (97.5 bits), Expect = 2.5e-30, Sum P(2) = 2.5e-30
  =>sp|P97351|RS3A_MOUSE 40S RIBOSOMAL PROTEIN S3A >gnl|PID|e285238 (Z83368)
            ribosomal protein S3a [Mus musculus]
            Length = 264
	    Score = 277 (97.5 bits), Expect = 3.2e-30, Sum P(2) = 3.2e-30
  =>gi|3037139 (AF056328) V-Fos transformation effector [Oryzias latipes]
            Length = 266
	    Score = 277 (97.5 bits), Expect = 3.2e-30, Sum P(2) = 3.2e-30
  =>sp|P55830|RS3A_DROME 40S RIBOSOMAL PROTEIN S3A (C3 PROTEIN) >gnl|PID|e286855
            (Y10115) ribosomal protein S3a [Drosophila melanogaster]
            Length = 270
	    Score = 267 (94.0 bits), Expect = 3.2e-30, Sum P(2) = 3.2e-30
  =>sp|P49242|RS3A_RAT 40S RIBOSOMAL PROTEIN S3A (V-FOS TRANSFORMATION EFFECTOR
            PROTEIN) >pir||A41974 ribosomal protein S3a - rat >gi|207649
            (M84716) v-fos transformation effector protein [Rattus norvegicus]
            >gi|495140 (X75161) rat ribosomal protein S3a [Rattus norvegicus]
            Length = 264
	    Score = 277 (97.5 bits), Expect = 5.2e-30, Sum P(2) = 5.2e-30
  =>sp|P48154|RS3A_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S3A >pir||S43584 ribosomal
            protein S3a homolog F26F3.5 - Caenorhabditis elegans >gi|474793
            (Z32681) F56F3.5 [Caenorhabditis elegans]
            Length = 257
	    Score = 277 (97.5 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
  =>sp|P40910|RS3A_CANAL 40S RIBOSOMAL PROTEIN RP10 >pir||S49366 ribosomal protein
            S0.e.B, cytosolic - yeast (Candida albicans) >gi|557223 (X82017)
            ribosomal protein 10 [Candida albicans]
            Length = 256
	    Score = 269 (94.7 bits), Expect = 2.2e-29, Sum P(2) = 2.2e-29
  =>sp|P33442|RS3A_YEAST 40S RIBOSOMAL PROTEIN RP10A >pir||S21121 ribosomal
            protein S0.e.A - yeast (Saccharomyces cerevisiae) >gi|396208
            (X65802) PLC1 gene product [Saccharomyces cerevisiae] >gi|471337
            (X68556) KRP-Y1 gene product [Saccharomyces cerevisiae] >gi|665976
            (U21094) Rp10ap: 40S ribosomal protein 10A [Saccharomyces
            cerevisiae]
            Length = 255
	    Score = 268 (94.3 bits), Expect = 2.2e-29, Sum P(2) = 2.2e-29
  =>sp|P23248|RS3B_YEAST 40S RIBOSOMAL PROTEIN RP10B >pir||S14051 ribosomal
            protein S0.e.B - yeast (Saccharomyces cerevisiae) >gi|3953 (X55360)
            mitochondrial fusion targeting mutant MFT1 protein [Saccharomyces
            cerevisiae] >gi|558412 (Z38114) len: 255, CAI: 0.76, RS3B_YEAST
            P23248 40S RIBOSOMAL PROTEIN RP10B [Saccharomyces cerevisiae]
            Length = 255
	    Score = 268 (94.3 bits), Expect = 2.2e-29, Sum P(2) = 2.2e-29
  =>sp|P52813|RS3A_ANOGA 40S RIBOSOMAL PROTEIN S3A (C3 PROTEIN) >gnl|PID|e246062
            (X98186) put. S3a ribosomal protein homologue [Anopheles gambiae]
            Length = 269
	    Score = 246 (86.6 bits), Expect = 4.0e-28, Sum P(2) = 4.0e-28
  =>sp|Q09781|RS3A_SCHPO 40S RIBOSOMAL PROTEIN RP10 >pir||S62431 hypothetical
            protein SPAC13G6.02c - fission yeast (Schizosaccharomyces pombe)
            >gi|1008987 (Z54308) 40S ribosomal protein subunit
            [Schizosaccharomyces pombe]
            Length = 252
	    Score = 241 (84.8 bits), Expect = 9.1e-27, Sum P(2) = 9.1e-27
  =>gi|17295 (Z18779) mitochondrial fusion target protein [Arabidopsis thaliana]
          Length = 70
	    Score = 144 (50.7 bits), Expect = 7.5e-09, P = 7.5e-09
  =>pir||B38346 ultra-high-sulfur keratin 2 - mouse >gi|200964 (M37760) serine 2
            ultra high sulfur protein [Mus musculus]
            Length = 223
	    Score = 92 (32.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
  =>gi|2622716 (AE000918) ribosomal protein S3a [Methanobacterium
            thermoautotrophicum]
            Length = 195
	    Score = 121 (42.6 bits), Expect = 7.8e-05, P = 7.8e-05
  =>pir||A38346 ultra-high-sulfur keratin 1 - mouse >gi|200962 (M37759) serine 1
            ultra high sulfur protein [Mus musculus]
            Length = 230
	    Score = 92 (32.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
  =>sp|P26371|KRUC_HUMAN KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN (UHS KERATIN)
            >pir||B36686 ultra-high-sulfur keratin - human >gi|34079 (X55293)
            ultra high-sulphur keratin protein [Homo sapiens] >gnl|PID|e1299394
            (AJ006693) ultra high sulfer keratin [Homo sapiens] >prf||1704255A
            Cys rich protein [Homo sapiens]
            Length = 169
	    Score = 82 (28.9 bits), Expect = 0.00029, Sum P(2) = 0.00029
  =>pir||S18946 high-sulfur keratin - human >gi|32472 (X63755) high-sulpher
            keratin [Homo sapiens]
            Length = 169
	    Score = 82 (28.9 bits), Expect = 0.00029, Sum P(2) = 0.00029
  =>sp|Q01643|M84B_DROME MALE SPECIFIC SPERM PROTEIN MST84DB >pir||S25773
            testis-specific protein Mst84Db - fruit fly (Drosophila
            melanogaster) >gi|11074 (X67703) Mst84Db [Drosophila melanogaster]
            Length = 74
	    Score = 68 (23.9 bits), Expect = 0.00042, Sum P(2) = 0.00042
  =>gi|2648199 (AE000944) SSU ribosomal protein S3AE (rps3AE) [Archaeoglobus
            fulgidus]
            Length = 211
	    Score = 114 (40.1 bits), Expect = 0.00085, P = 0.00085
  =>pir||I46412 keratin KAP5.4 - sheep >gi|313720 (X73434) KAP5.4 keratin protein
            [Ovis aries]
            Length = 191
	    Score = 96 (33.8 bits), Expect = 0.018, Sum P(2) = 0.018
  =>gnl|PID|e1299392 (AJ006692) ultra high sulfer keratin [Homo sapiens]
            Length = 194
	    Score = 84 (29.6 bits), Expect = 0.018, Sum P(2) = 0.018
  =>gi|515428 (Z35386) S-phase-specific protein [Arabidopsis thaliana]
           Length = 75
	    Score = 85 (29.9 bits), Expect = 0.023, P = 0.022
  =>gi|2388584 (AC000098) EST gb|ATTS1136 comes from this gene. [Arabidopsis
            thaliana]
            Length = 402
	    Score = 105 (37.0 bits), Expect = 0.038, P = 0.038

>CcruzaQ_2175 has the following protein neighbors:
Sequence,   
  =>gi|1197667 (U46857) vitellogenin [Anolis pulchellus]
            Length = 182
	    Score = 117 (41.2 bits), Expect = 0.00016, P = 0.00016
  =>sp|P53832|YN23_YEAST HYPOTHETICAL 52.3 KD PROTEIN IN MRPL10-ERG24 INTERGENIC
            REGION PRECURSOR >pir||S63257 probable membrane protein YNL283c -
            yeast (Saccharomyces cerevisiae) >gnl|PID|e239724 (Z71559) ORF
            YNL283c [Saccharomyces cerevisiae]
            Length = 503
	    Score = 126 (44.4 bits), Expect = 0.00023, P = 0.00023
  =>gnl|PID|e317491 (Z95620) unknown [Schizosaccharomyces pombe]
            Length = 309
	    Score = 122 (42.9 bits), Expect = 0.00027, P = 0.00027
  =>gnl|PID|e1315386 (AL031262) hypothetical protein [Schizosaccharomyces pombe]
            Length = 344
	    Score = 122 (42.9 bits), Expect = 0.00034, P = 0.00034
  =>sp|P14328|SP96_DICDI SPORE COAT PROTEIN SP96 >pir||S07638 spore coat protein
            SP96 precursor - slime mold (Dictyostelium discoideum) >gi|295736
            (X16491) spore coat protein sp96 [Dictyostelium discoideum]
            Length = 600
	    Score = 121 (42.6 bits), Expect = 0.0011, P = 0.0011
  =>sp|P32323|AGA1_YEAST A-AGGLUTININ ATTACHMENT SUBUNIT PRECURSOR >pir||A41258
            a-agglutinin core protein AGA1 - yeast (Saccharomyces cerevisiae)
            >gi|170964 (M60590) a-agglutinin core subunit [Saccharomyces
            cerevisiae] >gnl|PID|e239834 (Z71659) ORF YNR044w [Saccharomyces
            cerevisiae]
            Length = 725
	    Score = 121 (42.6 bits), Expect = 0.0014, P = 0.0014
  =>sp|P38844|YHU3_YEAST HYPOTHETICAL 33.4 KD PROTEIN IN RPL44-DCD1 INTERGENIC
            REGION PRECURSOR >pir||S46760 hypothetical protein YHR143w - yeast
            (Saccharomyces cerevisiae) >gi|500656 (U10397) Yhr143wp
            [Saccharomyces cerevisiae]
            Length = 325
	    Score = 115 (40.5 bits), Expect = 0.0019, P = 0.0019
  =>gi|603857 (Z46970) secreted acid phosphatase 2 (SAP2) [Leishmania mexicana]
           Length = 888
	    Score = 120 (42.2 bits), Expect = 0.0023, P = 0.0023
  =>pir||C61615 sericin MG-2 - greater wax moth (fragments)
            Length = 286
	    Score = 113 (39.8 bits), Expect = 0.0025, P = 0.0025
  =>gi|2408006 (Z99161) hypothetical protein [Schizosaccharomyces pombe]
            Length = 536
	    Score = 116 (40.8 bits), Expect = 0.0033, P = 0.0033
  =>gi|2058526 (U78523) histidine secretory acid phosphatase [Leishmania donovani]
            Length = 707
	    Score = 117 (41.2 bits), Expect = 0.0037, P = 0.0037
  =>pir||S55316 mucin (clone PGM-2B) - pig >gi|915207 (U10281) gastric mucin [Sus
            scrofa]
            Length = 317
	    Score = 111 (39.1 bits), Expect = 0.0051, P = 0.0051
  =>gi|1197665 (U46856) vitellogenin [Anolis pulchellus]
            Length = 200
	    Score = 106 (37.3 bits), Expect = 0.0061, P = 0.0061
  =>sp|P40472|SIM1_YEAST SIM1 PROTEIN >pir||S49886 probable membrane protein
            YIL123w - yeast (Saccharomyces cerevisiae) >gi|599994 (Z46833)
            unknown [Saccharomyces cerevisiae] >gi|763223 (Z47047) unknown
            [Saccharomyces cerevisiae]
            Length = 475
	    Score = 112 (39.4 bits), Expect = 0.0078, P = 0.0077
  =>gi|212879 (K02113) Gallus gallus vitellogenin [Gallus gallus]
           Length = 247
	    Score = 107 (37.7 bits), Expect = 0.0086, P = 0.0085
  =>gi|3319425 (AF077538) No definition line found [Caenorhabditis elegans]
            Length = 1275
	    Score = 116 (40.8 bits), Expect = 0.0097, P = 0.0097
  =>gi|2058524 (U78522) histidine secretory acid phospatase [Leishmania donovani]
            Length = 683
	    Score = 113 (39.8 bits), Expect = 0.0098, P = 0.0098
  =>pir||S55315 mucin (clone PGM-2A) - pig >pir||I47141 gastric mucin - pig
            (fragment) >gi|915208 (U10281) gastric mucin [Sus scrofa]
            Length = 528
	    Score = 111 (39.1 bits), Expect = 0.012, P = 0.012
  =>pir||S67570 hypothetical protein YDL037c - yeast (Saccharomyces cerevisiae)
            >gnl|PID|e237295 (Z71781) unknown [Saccharomyces cerevisiae]
            >gnl|PID|e252990 (Z74085) ORF YDL037c [Saccharomyces cerevisiae]
            Length = 328
	    Score = 108 (38.0 bits), Expect = 0.012, P = 0.012
  =>gnl|PID|e300478 (Z84818) GP80 [Bovine herpesvirus 4]
            Length = 273
	    Score = 106 (37.3 bits), Expect = 0.014, P = 0.014
  =>sp|P40442|YIQ9_YEAST HYPOTHETICAL 99.7 KD PROTEIN IN SDL1 5'REGION PRECURSOR
            >pir||S50358 hypothetical protein YIL169c - yeast (Saccharomyces
            cerevisiae) >gi|600808 (Z46921) unknown [Saccharomyces cerevisiae]
            >gi|604006 (Z47047) unknown [Saccharomyces cerevisiae]
            Length = 995
	    Score = 113 (39.8 bits), Expect = 0.016, P = 0.016
  =>sp|P36027|MID2_YEAST MATING PROCESS PROTEIN MID2 (SERINE-RICH PROTEIN SMS1)
            (PROTEIN KINASE A INTERFERENCE PROTEIN) >pir||S52137 MID2 protein -
            yeast (Saccharomyces cerevisiae) >gnl|PID|d1006784 (D29945) Mid2p
            [Saccharomyces cerevisiae] >gi|662143 (U20618) Mid2p: Mating
            process protein [Saccharomyces cerevisiae] >gnl|PID|d1006794
            (D29964) serine-rich transmembrane protein [Saccharomyces
            cerevisiae] >prf||2104276A integral membrane protein [Saccharomyces
            cerevisiae] >prf||2105188A Ser-rich transmembrane protein
            [Saccharomyces cerevisiae]
            Length = 376
	    Score = 107 (37.7 bits), Expect = 0.019, P = 0.019
  =>gi|1177622 (X89715) AOF1001 gene product [Saccharomyces cerevisiae]
            Length = 1001
	    Score = 112 (39.4 bits), Expect = 0.020, P = 0.020
  =>pir||S53365 mucin 5AC (clone CEL2) - human (fragment) >gi|563373 (Z34276)
            mucin [Homo sapiens]
            Length = 94
	    Score = 85 (29.9 bits), Expect = 0.022, P = 0.021
  =>gnl|PID|d1014462 (D89103) unnamed protein product [Schizosaccharomyces pombe]
            Length = 316
	    Score = 105 (37.0 bits), Expect = 0.024, P = 0.024
  =>gnl|PID|e1250013 (AL021746) hypothetical protein [Schizosaccharomyces pombe]
            Length = 317
	    Score = 105 (37.0 bits), Expect = 0.024, P = 0.024
  =>gi|1123052 (U41994) similar to glycoproteins [Caenorhabditis elegans]
            Length = 786
	    Score = 110 (38.7 bits), Expect = 0.025, P = 0.025
  =>gi|1103869 (U39815) surface coat glycoprotein TES-120 precursor [Toxocara
            canis]
            Length = 176
	    Score = 99 (34.8 bits), Expect = 0.026, P = 0.026
  =>sp|P28968|VGLX_HSVEB GLYCOPROTEIN X PRECURSOR >pir||VGBEX1 glycoprotein X
            precursor - equine herpesvirus 1 (strain Ab4p) >gi|330862 (M86664)
            membrane glycoprotein [Equine herpesvirus 1]
            Length = 797
	    Score = 109 (38.4 bits), Expect = 0.033, P = 0.033
  =>gnl|PID|d1020845 (D88733) membrane glycoprotein [Equine herpesvirus 1]
            Length = 866
	    Score = 109 (38.4 bits), Expect = 0.037, P = 0.036
  =>gnl|PID|d1020846 (D88734) membrane glycoprotein [Equine herpesvirus 1]
            Length = 867
	    Score = 109 (38.4 bits), Expect = 0.037, P = 0.036
  =>prf||2119294A YFW1 gene [Saccharomyces cerevisiae]
            Length = 605
	    Score = 106 (37.3 bits), Expect = 0.050, P = 0.049
  =>sp|P20962|THYP_HUMAN PARATHYMOSIN >pir||A32264 parathymosin - human >gi|339699
            (M24398) parathymosin [Homo sapiens]
            Length = 102
	    Score = 80 (28.2 bits), Expect = 0.077, P = 0.074
  =>gi|2388584 (AC000098) EST gb|ATTS1136 comes from this gene. [Arabidopsis
            thaliana]
            Length = 402
	    Score = 102 (35.9 bits), Expect = 0.079, P = 0.076
  =>pir||S53367 mucin 5AC (clone MAR11) - human (fragment) >gi|563385 (Z34282)
            mucin [Homo sapiens]
            Length = 98
	    Score = 79 (27.8 bits), Expect = 0.097, P = 0.093
  =>sp|P38739|YHC8_YEAST HYPOTHETICAL 63.8 KD PROTEIN IN GUT1-RIM1 INTERGENIC
            REGION PRECURSOR >pir||S48940 hypothetical protein YHL028w - yeast
            (Saccharomyces cerevisiae) >gi|2289857 (U11583) Similiar to mucin
            and several other Ser-Thr-rich proteins [Saccharomyces cerevisiae]
            Length = 605
	    Score = 103 (36.3 bits), Expect = 0.11, P = 0.10

>CcruzaQ_901 has the following protein neighbors:
Sequence,   
  =>gi|2565091 (U80761) CTG26 alternate open reading frame [Homo sapiens]
            Length = 124
	    Score = 96 (33.8 bits), Expect = 0.0014, P = 0.0014
  =>gi|1480863 (U63332) super cysteine rich protein; SCRP [Homo sapiens]
            Length = 46
	    Score = 96 (33.8 bits), Expect = 0.0014, P = 0.0014
  =>gnl|PID|e1309113 (Y16021) tat [Human immunodeficiency virus type 1]
            Length = 71
	    Score = 55 (19.4 bits), Expect = 0.083, Sum P(2) = 0.080
  =>gnl|PID|e1309143 (Y16027) tat [Human immunodeficiency virus type 1]
            Length = 71
	    Score = 57 (20.1 bits), Expect = 0.10, Sum P(2) = 0.098
  =>gnl|PID|e1309138 (Y16026) tat [Human immunodeficiency virus type 1]
            Length = 71
	    Score = 56 (19.7 bits), Expect = 0.10, Sum P(2) = 0.099

>CcruzaQ_852 has the following protein neighbors:
Sequence,   
  =>sp|P20618|PRC5_HUMAN PROTEASOME COMPONENT C5 (MACROPAIN SUBUNIT C5)
            (PROTEASOME GAMMA CHAIN) (MULTICATALYTIC ENDOPEPTIDASE COMPLEX
            SUBUNIT C5) >pir||SNHUC5 multicatalytic endopeptidase complex (EC
            3.4.99.46) chain C5 - human >gnl|PID|d1001116 (D00761) proteasome
            subunit C5 [Homo sapiens]
            Length = 241
	    Score = 295 (103.8 bits), Expect = 4.0e-43, Sum P(2) = 4.0e-43
  =>sp|P18421|PRC5_RAT PROTEASOME COMPONENT C5 (MACROPAIN SUBUNIT C5) (PROTEASOME
            GAMMA CHAIN) (MULTICATALYTIC ENDOPEPTIDASE COMPLEX SUBUNIT C5)
            >pir||S09696 multicatalytic endopeptidase complex (EC 3.4.99.46)
            chain C5 - rat >gi|56998 (X52783) proteasome subunit RC5 [Rattus
            norvegicus]
            Length = 240
	    Score = 292 (102.8 bits), Expect = 4.0e-43, Sum P(2) = 4.0e-43
  =>sp|O09061|PRC5_MOUSE PROTEASOME COMPONENT C5 (MACROPAIN SUBUNIT C5)
            (PROTEASOME GAMMA CHAIN) (MULTICATALYTIC ENDOPEPTIDASE COMPLEX
            SUBUNIT C5) >gnl|PID|e113820 (X80686) component C5 of proteasome
            [Mus musculus] >gi|1698584 (U60824) proteasome beta-subunit C5 [Mus
            musculus]
            Length = 240
	    Score = 291 (102.4 bits), Expect = 8.2e-43, Sum P(2) = 8.2e-43
  =>gnl|PID|e138061 (X80686) component C5 of proteasome [Mus musculus]
            Length = 225
	    Score = 291 (102.4 bits), Expect = 8.2e-43, Sum P(2) = 8.2e-43
  =>gi|577531 (X79806) proteasome subunit [Arabidopsis thaliana] >gi|3421120
           (AF043537) 20S proteasome beta subunit PBF1 [Arabidopsis thaliana]
           Length = 223
	    Score = 281 (98.9 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
  =>sp|P42742|PRC5_ARATH PROTEASOME COMPONENT C5 (MULTICATALYTIC ENDOPEPTIDASE
            COMPLEX SUBUNIT C5) (TAS-F22/FAFP98) >gi|600387 (X67338) proteosome
            subunit [Arabidopsis thaliana]
            Length = 230
	    Score = 281 (98.9 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
  =>sp|P40304|PRC5_DROME PROTEASOME 26 KD SUBUNIT (MULTICATALYTIC ENDOPEPTIDASE
            COMPLEX 26 KD SUBUNIT) >gi|392868 (U00790) proteasome subunit
            [Drosophila melanogaster]
            Length = 235
	    Score = 257 (90.5 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
  =>sp|P23724|PRC5_YEAST POTENTIAL PROTEASOME COMPONENT C5 (MULTICATALYTIC
            ENDOPEPTIDASE COMPLEX SUBUNIT C5) >pir||S42436 multicatalytic
            endopeptidase complex (EC 3.4.99.46) chain PRS3 - yeast
            (Saccharomyces cerevisiae) >gi|171468 (M34777) proteasome subunit
            [Saccharomyces cerevisiae] >gnl|PID|d1001184 (D00845) proteasome
            subunit [Saccharomyces cerevisiae] >gi|463267 (X78214) PRS3;
            pid:g463267 [Saccharomyces cerevisiae] >gi|536057 (Z35802) ORF
            YBL041w [Saccharomyces cerevisiae]
            Length = 241
	    Score = 235 (82.7 bits), Expect = 3.0e-35, Sum P(2) = 3.0e-35
  =>pdb|1RYP|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
            Angstroms Resolution Multicatalytic Proteinase, 20s Proteasome,
            Protein Degradation, Antigen Processing, Hydrolase, Protease
            Mol_id: 1; Molecule: 20s Proteasome; C... >pdb|1RYP|1 Chain 1,
            Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms
            Resolution Multicatalytic Proteinase, 20s Proteasome, Protein
            Degradation, Antigen Processing, Hydrolase, Protease Mol_id: 1;
            Molecule: 20s Proteasome; C...
            Length = 222
	    Score = 235 (82.7 bits), Expect = 9.9e-35, Sum P(2) = 9.9e-35
  =>gnl|PID|d1029216 (AB014058) beta 6 subunit of 20S proteasome [Oryza sativa]
            Length = 221
	    Score = 250 (88.0 bits), Expect = 4.7e-33, Sum P(2) = 4.7e-33
  =>sp|P34286|YKK9_CAEEL HYPOTHETICAL 63.1 KD PROTEIN C02F5.9 IN CHROMOSOME III
            >pir||S44611 C02F5.9 protein - Caenorhabditis elegans >gi|289616
            (L14745) homology with proteasome component C5; coded for by C.
            elegans cDNAs GenBank:M80127 and T01498; putative [Caenorhabditis
            elegans]
            Length = 564
	    Score = 234 (82.4 bits), Expect = 5.1e-31, Sum P(2) = 5.1e-31
  =>pdb|1RYP|J Chain J, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
            Angstroms Resolution Multicatalytic Proteinase, 20s Proteasome,
            Protein Degradation, Antigen Processing, Hydrolase, Protease
            Mol_id: 1; Molecule: 20s Proteasome; C... >pdb|1RYP|X Chain X,
            Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms
            Resolution Multicatalytic Proteinase, 20s Proteasome, Protein
            Degradation, Antigen Processing, Hydrolase, Protease Mol_id: 1;
            Molecule: 20s Proteasome; C...
            Length = 204
	    Score = 108 (38.0 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
  =>sp|P25451|PRCT_YEAST PROTEASOME COMPONENT PUP3 (MACROPAIN SUBUNIT PUP3)
            (MULTICATALYTIC ENDOPEPTIDASE COMPLEX SUBUNIT PUP3) >pir||S29251
            hypothetical protein YER094c - yeast (Saccharomyces cerevisiae)
            >gi|172337 (M88470) ORF1 [Saccharomyces cerevisiae] >gi|603332
            (U18839) Pup3p [Saccharomyces cerevisiae]
            Length = 205
	    Score = 108 (38.0 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
  =>sp|P40112|PRCT_RAT PROTEASOME THETA CHAIN (MACROPAIN THETA CHAIN)
            (MULTICATALYTIC ENDOPEPTIDASE COMPLEX THETA CHAIN) (PROTEASOME
            CHAIN 13) (PROTEASOME COMPONENT C10-II) >pir||S40468 proteasome
            subunit RC10-Ii - rat >gnl|PID|d1005358 (D21800) proteasome subunit
            RC10-II [Rattus sp.]
            Length = 205
	    Score = 110 (38.7 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
  =>gnl|PID|e1249767 (AL021730) proteasome component precursor
            [Schizosaccharomyces pombe]
            Length = 226
	    Score = 119 (41.9 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
  =>gi|3063687 (AF058707) proteasome subunit C10-11 [Oncorhynchus mykiss]
            Length = 205
	    Score = 110 (38.7 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
  =>sp|P49720|PRCT_HUMAN PROTEASOME THETA CHAIN (MACROPAIN THETA CHAIN)
            (MULTICATALYTIC ENDOPEPTIDASE COMPLEX THETA CHAIN) (PROTEASOME
            CHAIN 13) (PROTEASOME COMPONENT C10-II) >pir||S50149 HsC10-II
            protein - human >gnl|PID|d1006190 (D26598) proteasome subunit
            HsC10-II [Homo sapiens] >prf||2021261C proteasome:SUBUNIT=HsC10-II
            [Homo sapiens]
            Length = 205
	    Score = 106 (37.3 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
  =>gi|395388 (Z17986) proteasome subunit RC5 like [Arabidopsis thaliana]
           Length = 85
	    Score = 149 (52.5 bits), Expect = 2.0e-09, P = 2.0e-09
  =>sp|Q58634|PRCB_METJA PROTEASOME, BETA SUBUNIT (MULTICATALYTIC ENDOPEPTIDASE
            COMPLEX BETA SUBUNIT) >pir||D64454 proteasome beta subunit homolog
            - Methanococcus jannaschii >gi|1591869 (U67564) proteasome, subunit
            beta (psmB) [Methanococcus jannaschii]
            Length = 224
	    Score = 141 (49.6 bits), Expect = 5.0e-07, P = 5.0e-07
  =>gnl|PID|d1031451 (AP000006) 207aa long hypothetical proteasome beta subunit
            precursor [Pyrococcus horikoshii]
            Length = 207
	    Score = 136 (47.9 bits), Expect = 1.2e-06, P = 1.2e-06
  =>gi|1280152 (U55855) similar to the proteasome B-type family [Caenorhabditis
            elegans]
            Length = 204
	    Score = 93 (32.7 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
  =>gi|2622311 (AE000888) proteasome, beta subunit [Methanobacterium
            thermoautotrophicum]
            Length = 210
	    Score = 124 (43.7 bits), Expect = 4.8e-05, P = 4.8e-05
  =>gi|403215 (Z26405) proteasome C5 [Arabidopsis thaliana]
           Length = 36
	    Score = 103 (36.3 bits), Expect = 0.00024, P = 0.00024
  =>gi|2650155 (AE001071) proteasome, subunit beta (psmB) [Archaeoglobus fulgidus]
            Length = 213
	    Score = 118 (41.5 bits), Expect = 0.00029, P = 0.00029
  =>gnl|PID|e1154151 (AJ002142) proteasome Z subunit [Ciona intestinalis]
            Length = 276
	    Score = 92 (32.4 bits), Expect = 0.00039, Sum P(2) = 0.00039

>CcruzaQ_2104 has the following protein neighbors:
Sequence,   
  =>gnl|PID|d1022401 (AB005750) ribosomal protein L4 [Schizosaccharomyces pombe]
            Length = 257
	    Score = 226 (79.6 bits), Expect = 1.2e-45, Sum P(3) = 1.2e-45
  =>gnl|PID|e1285350 (AL022299) ribosomal protein [Schizosaccharomyces pombe]
            >gnl|PID|e1291883 (AJ001133) ribosomal protein L7
            [Schizosaccharomyces pombe]
            Length = 259
	    Score = 226 (79.6 bits), Expect = 1.2e-45, Sum P(3) = 1.2e-45
  =>sp|P29453|RL4B_YEAST 60S RIBOSOMAL PROTEIN L7A-1 (L4-1) (YL5) (RP6)
            >pir||S16810 ribosomal protein L7a.e.B - yeast (Saccharomyces
            cerevisiae) >gi|3869 (X56835) ribosomal protein L4-1 [Saccharomyces
            cerevisiae] >gnl|PID|e245471 (Z73150) ORF YLL045c [Saccharomyces
            cerevisiae]
            Length = 256
	    Score = 194 (68.3 bits), Expect = 3.4e-43, Sum P(3) = 3.4e-43
  =>gi|172444 (M88608) ribosomal protein L4 [Saccharomyces cerevisiae]
           Length = 255
	    Score = 194 (68.3 bits), Expect = 4.3e-43, Sum P(3) = 4.3e-43
  =>pir||A57416 ribosomal protein L7a - fruit fly (Drosophila melanogaster)
            Length = 272
	    Score = 233 (82.0 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
  =>sp|P32429|RL7A_CHICK 60S RIBOSOMAL PROTEIN L7A >pir||S18159 ribosomal protein
            L7a - chicken >gi|63778 (X62640) ribosomal protein L7a [Gallus
            gallus] >gnl|PID|d1003905 (D14522) ribosomal protein L7a [Gallus
            gallus]
            Length = 266
	    Score = 236 (83.1 bits), Expect = 3.4e-36, Sum P(2) = 3.4e-36
  =>gnl|PID|e1248480 (Y15171) ribosomal protein L7a [Fugu rubripes]
            Length = 266
	    Score = 236 (83.1 bits), Expect = 3.4e-36, Sum P(2) = 3.4e-36
  =>gi|2529665 (AC002535) putative ribosomal protein L7A [Arabidopsis thaliana]
            Length = 257
	    Score = 220 (77.4 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
  =>gi|3377708 (AF079312) 60S ribosomal protein rpL7a [Anopheles gambiae]
            Length = 271
	    Score = 206 (72.5 bits), Expect = 1.5e-35, Sum P(3) = 1.5e-35
  =>sp|P35685|RL7A_ORYSA 60S RIBOSOMAL PROTEIN L7A >pir||S38360 ribosomal protein
            L7a - rice >gnl|PID|d1002646 (D12631) ribosomal protein L7A [Oryza
            sativa]
            Length = 258
	    Score = 215 (75.7 bits), Expect = 4.8e-35, Sum P(2) = 4.8e-35
  =>sp|P17076|RL4A_YEAST 60S RIBOSOMAL PROTEIN L7A-2 (L4-2) (YL5) (RP6)
            >pir||R5BY7A ribosomal protein L7a.e.A - yeast (Saccharomyces
            cerevisiae) >gi|3871 (X56836) ribosomal protein L4-2 [Saccharomyces
            cerevisiae] >gi|747613 (U17361) ribosomal protein L4 [Saccharomyces
            cerevisiae] >gi|2289862 (U11583) 60S ribosomal protein L7A-1 (L4-1)
            (YL5) (RP6) [Saccharomyces cerevisiae]
            Length = 256
	    Score = 193 (67.9 bits), Expect = 5.2e-32, Sum P(2) = 5.2e-32
  =>gi|4396 (X17204) L4 protein (AA 1-256) [Saccharomyces cerevisiae]
         Length = 256
	    Score = 193 (67.9 bits), Expect = 5.2e-32, Sum P(2) = 5.2e-32
  =>sp|P46223|RL7A_DROME 60S RIBOSOMAL PROTEIN L7A >gi|806545 (X82782) ribosomal
            protein L7a [Drosophila melanogaster]
            Length = 271
	    Score = 236 (83.1 bits), Expect = 1.0e-31, Sum P(3) = 1.0e-31
  =>sp|P11518|RL7A_HUMAN 60S RIBOSOMAL PROTEIN L7A (PLA-X POLYPEPTIDE) (SURF-3)
            >pir||R5HU7A ribosomal protein L7a - human >pir||R5RT7A ribosomal
            protein L7a - rat >gi|34203 (X52138) L7a protein [Homo sapiens]
            >gi|35512 (X06705) PLA-X polypeptide [Homo sapiens] >gi|36647
            (X61923) ribosomal protein L7a [Homo sapiens] >gi|56956 (X15013)
            ribosomal protein L7a (AA 1-266) [Rattus rattus] >gi|337495
            (M36072) ribosomal protein L7a large subunit [Homo sapiens]
            >prf||2122395A nuclear hormone receptor-associated protein [Homo
            sapiens]
            Length = 266
	    Score = 241 (84.8 bits), Expect = 3.6e-31, Sum P(2) = 3.6e-31
  =>sp|P12970|RL7A_MOUSE 60S RIBOSOMAL PROTEIN L7A (SURFEIT LOCUS PROTEIN 3)
            >pir||A30241 transcription factor Surf-3 - mouse >gi|201082
            (M14689) surfeit 3 protein [Mus musculus]
            Length = 266
	    Score = 241 (84.8 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
  =>sp|P49692|RL7A_ARATH 60S RIBOSOMAL PROTEIN L7A >gi|406831 (Z26806) 60S
            ribosomal protein L7A [Arabidopsis thaliana]
            Length = 133
	    Score = 222 (78.1 bits), Expect = 1.2e-17, P = 1.2e-17
  =>gi|972426 (F14581) expressed sequence tag [Sus scrofa]
           Length = 132
	    Score = 174 (61.3 bits), Expect = 2.9e-12, P = 2.9e-12
  =>gi|2649836 (AE001051) LSU ribosomal protein L7AE (rpl7AE) [Archaeoglobus
            fulgidus]
            Length = 119
	    Score = 126 (44.4 bits), Expect = 6.9e-07, P = 6.9e-07
  =>pir||B64450 ribosomal protein HS6-type - Methanococcus jannaschii
            Length = 120
	    Score = 123 (43.3 bits), Expect = 1.5e-06, P = 1.5e-06
  =>sp|P54066|RS6X_METJA 30S RIBOSOMAL PROTEIN HS6-LIKE >gi|2826375 (U67562) LSU
            ribosomal protein L7AE [Methanococcus jannaschii]
            Length = 117
	    Score = 123 (43.3 bits), Expect = 1.5e-06, P = 1.5e-06
  =>sp|Q21568|NHPX_CAEEL NHP2/RS6 FAMILY PROTEIN YEL026W HOMOLOG >gi|872079
            (Z49911) M28.5 [Caenorhabditis elegans]
            Length = 128
	    Score = 122 (42.9 bits), Expect = 1.9e-06, P = 1.9e-06
  =>gnl|PID|d1031547 (AP000006) 124aa long hypothetical 50S ribosomal protein L7
            [Pyrococcus horikoshii]
            Length = 124
	    Score = 119 (41.9 bits), Expect = 4.0e-06, P = 4.0e-06
  =>sp|P55769|NHPX_HUMAN NHP2/RS6 FAMILY PROTEIN YEL026W HOMOLOG (HIGH MOBILITY
            GROUP-LIKE NUCLEAR PROTEIN 2 HOMOLOG) >gi|2618578 (D50420) OTK27
            [Homo sapiens] >prf||2210268A nuclear protein-NHP2-like protein
            [Homo sapiens]
            Length = 128
	    Score = 117 (41.2 bits), Expect = 6.7e-06, P = 6.7e-06
  =>gi|2621305 (AE000812) ribosomal protein L7a [Methanobacterium
            thermoautotrophicum]
            Length = 130
	    Score = 115 (40.5 bits), Expect = 1.1e-05, P = 1.1e-05
  =>sp|P39990|NHPX_YEAST NHP2/RS6 FAMILY PROTEIN YEL026W >pir||S50433 hypothetical
            protein YEL026w - yeast (Saccharomyces cerevisiae) >gi|602393
            (U18530) Yel026wp [Saccharomyces cerevisiae]
            Length = 126
	    Score = 111 (39.1 bits), Expect = 3.1e-05, P = 3.1e-05
  =>sp|P32495|NHP2_YEAST HIGH MOBILITY GROUP-LIKE NUCLEAR PROTEIN 2 >pir||S67767
            high mobility group-like protein NHP2 - yeast (Saccharomyces
            cerevisiae) >gi|666101 (X57714) high mobility group-like nuclear
            protein 2 [Saccharomyces cerevisiae] >gnl|PID|e253338 (X99000)
            high-mobility-group-like protein [Saccharomyces cerevisiae]
            >gnl|PID|e253111 (Z74256) ORF YDL208w [Saccharomyces cerevisiae]
            Length = 173
	    Score = 116 (40.8 bits), Expect = 0.00013, P = 0.00013
  =>sp|P55770|NHPX_RAT NHP2/RS6 FAMILY PROTEIN YEL026W HOMOLOG (HIGH MOBILITY
            GROUP-LIKE NUCLEAR PROTEIN 2 HOMOLOG)
            Length = 95
	    Score = 103 (36.3 bits), Expect = 0.00023, P = 0.00023
  =>gi|151002 (M57551) transcription regulatory protein [Pseudomonas aeruginosa]
           Length = 340
	    Score = 104 (36.6 bits), Expect = 0.023, Sum P(2) = 0.022
  =>sp|P15276|ALGP_PSEAE TRANSCRIPTIONAL REGULATORY PROTEIN ALGP (ALGINATE
            REGULATORY PROTEIN ALGR3) >gi|151046 (M30145) alginate regulatory
            protein AlgR3 [Pseudomonas aeruginosa]
            Length = 340
	    Score = 104 (36.6 bits), Expect = 0.023, Sum P(2) = 0.022
  =>pir||A35630 regulatory protein algR3 - Pseudomonas aeruginosa
            Length = 340
	    Score = 104 (36.6 bits), Expect = 0.023, Sum P(2) = 0.022
  =>pir||JQ0148 hypothetical 34.4K protein - Pseudomonas aeruginosa
            Length = 351
	    Score = 104 (36.6 bits), Expect = 0.025, Sum P(2) = 0.025
  =>gi|436195 (L27120) histone H1 [Trypanosoma cruzi]
           Length = 86
	    Score = 81 (28.5 bits), Expect = 0.059, P = 0.057
  =>sp|P40268|H1C2_TRYCR HISTONE H1.C2 >gi|436193 (L27115) histone H1 [Trypanosoma
            cruzi]
            Length = 97
	    Score = 81 (28.5 bits), Expect = 0.059, P = 0.057
  =>sp|P40269|H1C6_TRYCR HISTONE H1.C6/H1.C9 >gi|436199 (L27117) histone H1
            [Trypanosoma cruzi]
            Length = 87
	    Score = 81 (28.5 bits), Expect = 0.059, P = 0.057

>CcruzaQ_792 has the following protein neighbors:
Sequence,   
  =>gnl|PID|e1172489 (Y15369) MtN12 [Medicago truncatula]
            Length = 113
	    Score = 89 (31.3 bits), Expect = 0.0078, P = 0.0077
  =>sp|P37697|CCPA_ACEXY CELLULOSE COMPLEMENTING PROTEIN >pir||B36963 bcsA
            5'-region proline-rich protein - Acetobacter pasteurianus (ATCC
            23769) >gi|289054 (M96060) CcpAx [Acetobacter xylinum]
            Length = 353
	    Score = 107 (37.7 bits), Expect = 0.017, P = 0.017
  =>gi|1002380 (U24189) RRM-type RNA binding protein [Caenorhabditis elegans]
            Length = 398
	    Score = 105 (37.0 bits), Expect = 0.035, P = 0.034

>CcruzaQ_41 has the following protein neighbors:
Sequence,   
  =>gi|2952238 (AF036147) hypothetical protein [Trypanosoma cruzi]
            Length = 107
	    Score = 208 (73.2 bits), Expect = 3.5e-16, P = 3.5e-16

>CcruzaQ_3055 has the following protein neighbors:
Sequence,   
  =>gi|2554933 (AF020695) RNA binding protein [Trypanosoma brucei]
            Length = 262
	    Score = 320 (112.6 bits), Expect = 1.5e-66, Sum P(3) = 1.5e-66
  =>gi|2554935 (AF020696) RNA binding protein [Trypanosoma brucei]
            Length = 279
	    Score = 319 (112.3 bits), Expect = 5.8e-54, Sum P(2) = 5.8e-54
  =>gi|1181479 (U42580) PAPK (17X); similar to PBCV-1 ORF A41R, corresponds to
            Genbank Accession Number U17055 [Paramecium bursaria Chlorella
            virus 1]
            Length = 225
	    Score = 167 (58.8 bits), Expect = 1.7e-11, P = 1.7e-11
  =>gi|1181409 (U42580) Pro-rich, PAPK (20X); similar to Arabidopsis
            anter-specific Pro-rich protein, corresponds to Swiss-Prot
            Accession Number P40602 [Paramecium bursaria Chlorella virus 1]
            Length = 288
	    Score = 158 (55.6 bits), Expect = 1.3e-08, P = 1.3e-08
  =>gi|1131489 (U42580) Pro-rich protein; PAPK (24X); similar to Triticum PK-rich
            protein, corresponds to GenBank Accession Number X52472 [Paramecium
            bursaria Chlorella virus 1]
            Length = 339
	    Score = 158 (55.6 bits), Expect = 2.2e-08, P = 2.2e-08
  =>gi|1620077 (U42580) Pro-, Lys-rich, PAPK (30x);  similar to wheat Pro-,
            Lys-rich protein, GenBank Accession Number X52472 [Paramecium
            bursaria Chlorella virus 1]
            Length = 496
	    Score = 161 (56.7 bits), Expect = 2.2e-08, P = 2.2e-08
  =>gi|624066 (U42580) contains Pro-rich Px motif, PAPK (19X); similar to
           Arabidopsis anter-specific Pro-rich protein, corresponds to
           Swiss-Prot Accession Number P40602 [Paramecium bursaria Chlorella
           virus 1]
           Length = 549
	    Score = 159 (56.0 bits), Expect = 4.5e-08, P = 4.5e-08
  =>gnl|PID|d1012007 (D78307) DNA binding protein [Chlorella virus]
            Length = 616
	    Score = 158 (55.6 bits), Expect = 7.1e-08, P = 7.1e-08
  =>gi|624069 (U42580) contains Pro-rich Px motif, PAPK (8X); similar to
           Thermoproteus virus protein TPX, corresponds to Swiss-Prot Accession
           Number P19275 [Paramecium bursaria Chlorella virus 1]
           Length = 412
	    Score = 148 (52.1 bits), Expect = 5.0e-07, P = 5.0e-07
  =>pir||S29309 hypothetical protein 4 (phaC2 3' region) - Pseudomonas aeruginosa
            (fragment)
            Length = 217
	    Score = 132 (46.5 bits), Expect = 5.4e-06, P = 5.4e-06
  =>gi|1620056 (U42580) Lys-, Pro-rich, PAPK (10x);  similar to wheat Pro-,
            Lys-rich protein, corresponds to GenBank Accession Number X52472
            [Paramecium bursaria Chlorella virus 1]
            Length = 456
	    Score = 133 (46.8 bits), Expect = 3.0e-05, P = 3.0e-05
  =>gi|624113 (U42580) contains Gly-rich motifs GAGLGTGF (5X); similar to
           Arabidopsis Gly-rich protein, corresponds to Swiss-Prot Accession
           Number P27843 [Paramecium bursaria Chlorella virus 1]
           Length = 129
	    Score = 107 (37.7 bits), Expect = 8.2e-05, P = 8.2e-05
  =>gi|805006 (X80272) pprB [Pseudomonas putida]
           Length = 298
	    Score = 126 (44.4 bits), Expect = 8.4e-05, P = 8.4e-05
  =>pir||A35630 regulatory protein algR3 - Pseudomonas aeruginosa
            Length = 340
	    Score = 127 (44.7 bits), Expect = 8.5e-05, P = 8.5e-05
  =>sp|P15276|ALGP_PSEAE TRANSCRIPTIONAL REGULATORY PROTEIN ALGP (ALGINATE
            REGULATORY PROTEIN ALGR3) >gi|151046 (M30145) alginate regulatory
            protein AlgR3 [Pseudomonas aeruginosa]
            Length = 340
	    Score = 127 (44.7 bits), Expect = 8.5e-05, P = 8.5e-05
  =>pir||JQ0148 hypothetical 34.4K protein - Pseudomonas aeruginosa
            Length = 351
	    Score = 127 (44.7 bits), Expect = 9.1e-05, P = 9.1e-05
  =>gi|150987 (M32077) alginate regulatory protein P [Pseudomonas aeruginosa]
           Length = 352
	    Score = 126 (44.4 bits), Expect = 0.00012, P = 0.00012
  =>pir||A36128 regulatory protein algP - Pseudomonas aeruginosa (isolate cystic
            fibrosis)
            Length = 352
	    Score = 124 (43.7 bits), Expect = 0.00020, P = 0.00020
  =>gi|151002 (M57551) transcription regulatory protein [Pseudomonas aeruginosa]
           Length = 340
	    Score = 122 (42.9 bits), Expect = 0.00032, P = 0.00032
  =>sp|P06144|H1_LYTPI LATE HISTONE H1 >pir||A25550 histone H1 - sea urchin
            (Lytechinus pictus) >gi|9617 (X04488) late H1 (AA 1-210)
            [Lytechinus pictus]
            Length = 210
	    Score = 116 (40.8 bits), Expect = 0.00043, P = 0.00043
  =>pir||PQ0476 pistil extensin-like protein (clone pMG08) - common tobacco
            (fragment)
            Length = 154
	    Score = 108 (38.0 bits), Expect = 0.00044, P = 0.00044
  =>gi|19923 (Z14016) pistil extensin like protein, partial CDS [Nicotiana
          tabacum]
          Length = 155
	    Score = 108 (38.0 bits), Expect = 0.00051, P = 0.00051
  =>sp|P40602|APG_ARATH ANTER-SPECIFIC PROLINE-RICH PROTEIN APG PRECURSOR
            >pir||S21961 proline-rich protein APG - Arabidopsis thaliana
            >gi|22599 (X60377) APG gene product [Arabidopsis thaliana]
            Length = 534
	    Score = 122 (42.9 bits), Expect = 0.00067, P = 0.00067
  =>gi|699583 (U21211) histone H1-I [Chironomus dorsalis]
           Length = 241
	    Score = 116 (40.8 bits), Expect = 0.00069, P = 0.00069
  =>sp||FBOH_BOMMO_2 [Segment 2 of 2] FIBROIN HEAVY CHAIN PRECURSOR >pir||S01844
            fibroin - silkworm >gi|155999 (M35378) silk fibroin [Bombyx mori]
            >gi|930003 (X13869) silk fibroin (AA 37 - 252) [Bombyx mori]
            Length = 108
	    Score = 95 (33.4 bits), Expect = 0.0017, P = 0.0017
  =>gi|1276958 (U47088) glycine-rich cell wall protein [Daucus carota]
            Length = 87
	    Score = 95 (33.4 bits), Expect = 0.0017, P = 0.0017
  =>gi|2462785 (U73163) M-like protein [Streptococcus equi]
            Length = 374
	    Score = 115 (40.5 bits), Expect = 0.0024, P = 0.0023
  =>gi|577353 (U04620) M protein precursor; MSzW60 [Streptococcus equi]
           >prf||2111310A M-like protein [Streptococcus zooepidemicus]
           Length = 376
	    Score = 115 (40.5 bits), Expect = 0.0024, P = 0.0024
  =>gi|414525 (U02467) meiotin-1 [Lilium longiflorum]
           Length = 259
	    Score = 112 (39.4 bits), Expect = 0.0025, P = 0.0025
  =>pir||A49229 merozoite protein Bb-1 - Babesia bovis (fragment)
            Length = 545
	    Score = 117 (41.2 bits), Expect = 0.0025, P = 0.0025
  =>gi|475784 (M99575) 85 kDa protein [Babesia bovis]
           Length = 596
	    Score = 117 (41.2 bits), Expect = 0.0028, P = 0.0028
  =>gi|3170252 (AF043636) circumsporozoite protein [Plasmodium chabaudi]
            Length = 513
	    Score = 115 (40.5 bits), Expect = 0.0039, P = 0.0038
  =>pir||JQ0138 hypothetical 18.2K protein - Pseudomonas aeruginosa
            Length = 202
	    Score = 96 (33.8 bits), Expect = 0.0067, Sum P(2) = 0.0067
  =>gi|2605967 (AF030027) 24 [Equine herpesvirus 4]
            Length = 3534
	    Score = 120 (42.2 bits), Expect = 0.010, P = 0.010
  =>sp|P37218|H1_LYCES HISTONE H1 >pir||S45662 histone H1 - tomato >gi|424100
            (U03391) histone H1 [Lycopersicon esculentum]
            Length = 287
	    Score = 107 (37.7 bits), Expect = 0.011, P = 0.011
  =>sp|P15869|H1B_STRPU HISTONE H1-BETA, LATE EMBRYONIC >gi|161479 (M20314)
            histone H1-beta [Strongylocentrotus purpuratus]
            Length = 211
	    Score = 104 (36.6 bits), Expect = 0.012, P = 0.012
  =>pir||A28100 histone H1-beta, embryonic - sea urchin (Strongylocentrotus
            purpuratus)
            Length = 211
	    Score = 104 (36.6 bits), Expect = 0.012, P = 0.012
  =>sp|P40270|H1C8_TRYCR HISTONE H1.C8/H1.M1 >gi|436197 (L27116) histone H1
            [Trypanosoma cruzi] >gi|436201 (L27118) Histone H1 [Trypanosoma
            cruzi]
            Length = 74
	    Score = 87 (30.6 bits), Expect = 0.013, P = 0.013
  =>sp|P40266|H11_GLYSA HISTONE H1-I >gi|457124 (L29104) histone H1-I
            [Glyptotendipes salinus]
            Length = 233
	    Score = 104 (36.6 bits), Expect = 0.016, P = 0.016
  =>gnl|PID|d1025045 (D88440) high molecular mass nuclear antigen [Gallus gallus]
            Length = 1151
	    Score = 103 (36.3 bits), Expect = 0.018, Sum P(2) = 0.018
  =>gnl|PID|e1173381 (Y12599) histone H1 [Apium graveolens]
            Length = 302
	    Score = 105 (37.0 bits), Expect = 0.021, P = 0.021
  =>pir||S50755 hypothetical protein VSP-3 - Chlamydomonas reinhardtii >gi|530876
            (L29029) amino acid feature: Rod protein domain, aa 266 .. 468;
            amino acid feature: globular protein domain, aa 32 .. 265
            [Chlamydomonas reinhardtii]
            Length = 473
	    Score = 107 (37.7 bits), Expect = 0.027, P = 0.026
  =>gnl|PID|e1247155 (Z81108) R09B3.2 [Caenorhabditis elegans]
            Length = 83
	    Score = 84 (29.6 bits), Expect = 0.027, P = 0.027
  =>sp|P15870|H1D_STRPU HISTONE H1-DELTA >pir||A32137 histone H1-delta - sea
            urchin (Strongylocentrotus purpuratus) >gi|161485 (J03807) histone
            H1-delta [Strongylocentrotus purpuratus]
            Length = 185
	    Score = 99 (34.8 bits), Expect = 0.031, P = 0.030
  =>gnl|PID|d1026131 (D87064) histone H1 [Triticum aestivum]
            Length = 284
	    Score = 103 (36.3 bits), Expect = 0.032, P = 0.032
  =>pir||S43071 hypothetical protein 5 - human herpesvirus 6 >gi|469957 (X73675)
            ORF5 [Human herpesvirus 6]
            Length = 143
	    Score = 94 (33.1 bits), Expect = 0.033, P = 0.032
  =>sp|P40273|H161_TRYCR HISTONE H1.M6.1 >gi|436203 (L27119) Histone H1
            [Trypanosoma cruzi]
            Length = 80
	    Score = 83 (29.2 bits), Expect = 0.035, P = 0.034
  =>gnl|PID|e221410 (X95556) oleosin-like protein [Brassica napus]
            Length = 92
	    Score = 83 (29.2 bits), Expect = 0.035, P = 0.034
  =>sp|P40263|H11_GLYBA HISTONE H1-I >gi|457118 (L29101) histone H1-I
            [Glyptotendipes barbipes] >prf||2103263A histone H1:ISOTYPE=I
            [Glyptotendipes barbipes]
            Length = 233
	    Score = 101 (35.6 bits), Expect = 0.036, P = 0.035
  =>sp|P07796|H1G_STRPU HISTONE H1-GAMMA, LATE >pir||A26721 histone H1-gamma,
            embryonic - sea urchin (Strongylocentrotus purpuratus) >gi|161518
            (M16033) histone H1-gamma [Strongylocentrotus purpuratus]
            Length = 217
	    Score = 100 (35.2 bits), Expect = 0.039, P = 0.038
  =>gi|2653671 (U88587) 120 kDa style glycoprotein [Nicotiana alata]
            Length = 461
	    Score = 105 (37.0 bits), Expect = 0.043, P = 0.042
  =>sp|P40274|H162_TRYCR HISTONE H1.M6.2 >gi|436204 (L27119) Histone H1
            [Trypanosoma cruzi]
            Length = 90
	    Score = 82 (28.9 bits), Expect = 0.044, P = 0.043
  =>gi|1620058 (U42580) Gly-rich, AGLG (9x);  similar to herpesvirus hypothetical
            protein 5, corresponds to GenBank Accession Number S43071
            [Paramecium bursaria Chlorella virus 1]
            Length = 259
	    Score = 101 (35.6 bits), Expect = 0.046, P = 0.045
  =>gnl|PID|e255913 (Z77662) F47B8.5 [Caenorhabditis elegans]
            Length = 581
	    Score = 106 (37.3 bits), Expect = 0.046, P = 0.045
  =>sp|P40603|APG_BRANA ANTER-SPECIFIC PROLINE-RICH PROTEIN APG (PROTEIN CEX)
            >pir||S16748 proline-rich protein - rape (fragment) >gi|22597
            (X60376) proline-rich protein [Brassica napus]
            Length = 449
	    Score = 104 (36.6 bits), Expect = 0.054, P = 0.052
  =>pir||S08315 cell wall protein - maize (fragment) >gi|22269 (X13506) cell wall
            protein (108 AA) [Zea mays] >gi|168459 (M36914) cell wall protein
            (put.); putative [Zea mays]
            Length = 108
	    Score = 81 (28.5 bits), Expect = 0.057, P = 0.056
  =>pir||PQ0477 pistil extensin-like protein (clone pMG09) - common tobacco
            (fragment)
            Length = 80
	    Score = 81 (28.5 bits), Expect = 0.057, P = 0.056
  =>pir||S10120 Balbiani ring protein 1-beta (clone 18-1) - midge (Chironomus
            pallidivittatus) (fragment) >gi|683543 (X13032) giant secretory
            protein [Chironomus pallidivittatus]
            Length = 85
	    Score = 81 (28.5 bits), Expect = 0.057, P = 0.056
  =>gi|168457 (M36913) cell wall protein (put.); putative [Zea mays]
           Length = 109
	    Score = 81 (28.5 bits), Expect = 0.057, P = 0.056
  =>gi|537916 (L20696) meiotin-1 [Lilium longiflorum]
           Length = 296
	    Score = 101 (35.6 bits), Expect = 0.059, P = 0.057
  =>sp|Q10381|ODO2_MYCTU DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE COMPONENT (E2) OF
            2-OXOGLUTARATE DEHYDROGENASE COMPLEX >gnl|PID|e233591 (Z70283) sucB
            [Mycobacterium tuberculosis]
            Length = 553
	    Score = 87 (30.6 bits), Expect = 0.061, Sum P(2) = 0.059
  =>sp|Q00650|I3MS_BRANA MICROSPORE-SPECIFIC PROTEIN I3 >pir||S16569
            microspore-specific protein I3 - rape >gi|17823 (X57332) I3 product
            [Brassica napus]
            Length = 156
	    Score = 94 (33.1 bits), Expect = 0.061, P = 0.059
  =>gi|1155068 (X94976) cell wall-plasma membrane linker protein [Brassica napus]
            Length = 376
	    Score = 101 (35.6 bits), Expect = 0.063, Sum P(2) = 0.061
  =>gnl|PID|e1258355 (Z98204) extensin [Hordeum vulgare]
            Length = 330
	    Score = 101 (35.6 bits), Expect = 0.072, P = 0.069
  =>gi|8814 (X01802) put. vitelline reading frame [Drosophila melanogaster]
         Length = 96
	    Score = 80 (28.2 bits), Expect = 0.073, P = 0.071
  =>pir||A22706 vitelline membrane protein - fruit fly (Drosophila melanogaster)
            (fragment)
            Length = 104
	    Score = 80 (28.2 bits), Expect = 0.073, P = 0.071
  =>gnl|PID|e1247156 (Z81108) R09B3.3 [Caenorhabditis elegans]
            Length = 85
	    Score = 80 (28.2 bits), Expect = 0.074, P = 0.071
  =>pir||S50195 oleosin - rape >gi|558553 (X82020) oleosin [Brassica napus]
            Length = 165
	    Score = 94 (33.1 bits), Expect = 0.080, P = 0.077
  =>pir||S14959 proline-rich protein - wheat >gi|21842 (X52472) proline-rich
            protein [Triticum aestivum]
            Length = 378
	    Score = 101 (35.6 bits), Expect = 0.090, P = 0.086
  =>pir||G60110 repetitive protein antigen 69/70 - Trypanosoma cruzi (fragment)
            Length = 97
	    Score = 79 (27.8 bits), Expect = 0.094, P = 0.090
  =>gi|53144 (X12972) myosin alkali light chain (AA 1 - 45) (1500 is 1st base in
          codon) [Mus musculus]
          Length = 45
	    Score = 79 (27.8 bits), Expect = 0.094, P = 0.090
  =>sp|P09542|MLEV_MOUSE MYOSIN LIGHT CHAIN 1, SLOW-TWITCH MUSCLE B/VENTRICULAR
            ISOFORM >pir||S01945 myosin catalytic light chain, ventricular and
            slow striated muscle - mouse (fragment)
            Length = 52
	    Score = 79 (27.8 bits), Expect = 0.094, P = 0.090
  =>sp|Q05019|S40B_CHITE SALIVARY GLAND SP38-40.B PROTEIN PRECURSOR >pir||S33820
            secretory protein Sp38-40.B - midge (Chironomus tentans) >gi|7110
            (X70063) 38-40.B gene product [Chironomus tentans]
            Length = 253
	    Score = 98 (34.5 bits), Expect = 0.095, P = 0.091

>CcruzaQ_1046 has the following protein neighbors:
Sequence,   
  =>gi|2746717 (AF038379) ribosomal protein S2 [Leishmania amazonensis]
            Length = 265
	    Score = 1084 (381.6 bits), Expect = 5.2e-109, P = 5.2e-109
  =>sp|P51403|RS2_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S2 >gi|1123088 (U42436)
            coded for by C. elegans cDNA yk56a1.3; coded for by C. elegans cDNA
            CEMSG41FB; coded for by C. elegans cDNA yk81f4.5; coded for by C.
            elegans cDNA yk56a1.5; coded for by C. elegans cDNA yk81f4.3;
            similar to the S5P family of riboso...
            Length = 272
	    Score = 822 (289.4 bits), Expect = 7.7e-87, Sum P(2) = 7.7e-87
  =>gi|2335095 (AC002339) putative 40S ribosomal protein S2 [Arabidopsis thaliana]
            Length = 285
	    Score = 869 (305.9 bits), Expect = 3.1e-86, P = 3.1e-86
  =>sp|P25444|RS2_MOUSE 40S RIBOSOMAL PROTEIN S2 (S4) (LLREP3 PROTEIN)
            Length = 293
	    Score = 815 (286.9 bits), Expect = 9.9e-85, Sum P(2) = 9.9e-85
  =>sp|P27952|RS2_RAT 40S RIBOSOMAL PROTEIN S2 >pir||R3RTS2 ribosomal protein S2 -
            rat >gi|57718 (X57432) ribosomal protein S2 [Rattus rattus]
            Length = 293
	    Score = 812 (285.8 bits), Expect = 2.1e-84, Sum P(2) = 2.1e-84
  =>sp|P15880|RS2_HUMAN 40S RIBOSOMAL PROTEIN S2 (S4) (LLREP3 PROTEIN)
            Length = 293
	    Score = 810 (285.1 bits), Expect = 1.1e-83, Sum P(2) = 1.1e-83
  =>sp|P31009|RS2_DROME 40S RIBOSOMAL PROTEIN S2 (STRINGS OF PEARLS PROTEIN)
            >pir||S50325 ribosomal protein S2 - fruit fly (Drosophila
            melanogaster) >gi|515971 (U01334) ribosomal protein S2 [Drosophila
            melanogaster] >gi|515972 (U01335) ribosomal protein S2 [Drosophila
            melanogaster]
            Length = 267
	    Score = 836 (294.3 bits), Expect = 9.9e-83, P = 9.9e-83
  =>sp|O18789|RS2_BOVIN 40S RIBOSOMAL PROTEIN S2 >gi|2293579 (AF013215) ribosomal
            protein S2 [Bos taurus]
            Length = 286
	    Score = 802 (282.3 bits), Expect = 1.6e-82, Sum P(2) = 1.6e-82
  =>pir||S30395 ribosomal protein S2 - fruit fly (Drosophila melanogaster)
            >gi|288084 (X69120) ribosoaml protein S2 [Drosophila melanogaster]
            Length = 267
	    Score = 817 (287.6 bits), Expect = 1.0e-80, P = 1.0e-80
  =>sp|P49154|RS2_URECA 40S RIBOSOMAL PROTEIN S2 >gi|939718 (U30454) ribosomal
            protein S2 [Urechis caupo]
            Length = 278
	    Score = 817 (287.6 bits), Expect = 1.0e-80, P = 1.0e-80
  =>sp|P27685|RS2_DICDI 40S RIBOSOMAL PROTEIN S2 (S4) (LLREP3 PROTEIN)
            >pir||S22297 gene DdLLRep3 protein - slime mold (Dictyostelium
            discoideum) >gi|7299 (X56297) DdLLRep3 gene product [Dictyostelium
            discoideum]
            Length = 265
	    Score = 809 (284.8 bits), Expect = 7.2e-80, P = 7.2e-80
  =>gi|2920831 (U92699) ribosomal protein S2 [Rattus norvegicus]
            Length = 259
	    Score = 788 (277.4 bits), Expect = 1.2e-77, P = 1.2e-77
  =>gi|2920827 (U92697) ribosomal protein S2 [Rattus norvegicus]
            Length = 267
	    Score = 786 (276.7 bits), Expect = 2.0e-77, P = 2.0e-77
  =>gi|2920825 (U92696) ribosomal protein S2 [Rattus norvegicus]
            Length = 257
	    Score = 766 (269.6 bits), Expect = 2.6e-75, P = 2.6e-75
  =>gi|2920833 (U92700) ribosomal protein S2 [Rattus norvegicus]
            Length = 250
	    Score = 759 (267.2 bits), Expect = 1.4e-74, P = 1.4e-74
  =>sp|P25443|RS4_YEAST 40S RIBOSOMAL PROTEIN S4 (OMNIPOTENT SUPRESSOR PROTEIN
            SUP44) (RP12) (S2E) >pir||R3BYS2 ribosomal protein S2.e - yeast
            (Saccharomyces cerevisiae) >gi|172793 (M59375) ribosomal protein S4
            [Saccharomyces cerevisiae] >gnl|PID|e243351 (Z72645) ORF YGL123w
            [Saccharomyces cerevisiae] >gnl|PID|e214814 (X94106) SUP44
            [Saccharomyces cerevisiae]
            Length = 254
	    Score = 733 (258.0 bits), Expect = 8.1e-72, P = 8.1e-72
  =>sp|P46791|RS2_CRIGR 40S RIBOSOMAL PROTEIN S2 >pir||I48117 ribosomal protein S2
            - Chinese hamster (fragment) >gi|553841 (L22552) ribosomal protein
            S2 [Cricetulus griseus]
            Length = 202
	    Score = 704 (247.8 bits), Expect = 9.6e-69, P = 9.6e-69
  =>pir||A31139 ribosomal protein S2 - mouse (fragment) >gi|200812 (M20632) LLRep3
            protein [Mus musculus]
            Length = 221
	    Score = 677 (238.3 bits), Expect = 7.0e-66, P = 7.0e-66
  =>pir||S08228 ribosomal protein S2 - human (fragment) >gi|34392 (X17206) put.
            LLRep3 protein (AA 1-221) [Homo sapiens]
            Length = 221
	    Score = 674 (237.3 bits), Expect = 1.5e-65, P = 1.5e-65
  =>sp|P49688|RS2_ARATH 40S RIBOSOMAL PROTEIN S2 >gi|16781 (Z17622) 30S ribosomal
            protein S5 [Arabidopsis thaliana]
            Length = 167
	    Score = 585 (205.9 bits), Expect = 3.9e-56, P = 3.9e-56
  =>gnl|PID|d1022860 (AB002761) ribosomal protein S2 [Entamoeba histolytica]
            Length = 171
	    Score = 530 (186.6 bits), Expect = 2.6e-50, P = 2.6e-50
  =>gi|2648634 (AE000971) SSU ribosomal protein S5P (rps5P) [Archaeoglobus
            fulgidus]
            Length = 198
	    Score = 425 (149.6 bits), Expect = 3.5e-39, P = 3.5e-39
  =>gnl|PID|d1028879 (AB009525) 236aa long hypothetical 30S ribosomal protein S5
            [Pyrococcus horikoshii] >gnl|PID|d1031814 (AP000007) 236aa long
            hypothetical 30S ribosomal protein S5 [Pyrococcus horikoshii]
            Length = 236
	    Score = 425 (149.6 bits), Expect = 3.5e-39, P = 3.5e-39
  =>sp|P54045|RS5_METJA 30S RIBOSOMAL PROTEIN S5P >pir||C64359 ribosomal protein
            S5 - Methanococcus jannaschii >gi|1591177 (U67497) SSU ribosomal
            protein S5P (rpsE) [Methanococcus jannaschii]
            Length = 217
	    Score = 415 (146.1 bits), Expect = 4.1e-38, P = 4.1e-38
  =>gnl|PID|e274825 (Y07778) ribosomal protein S5 [Sulfolobus acidocaldarius]
            Length = 214
	    Score = 415 (146.1 bits), Expect = 4.1e-38, P = 4.1e-38
  =>sp|O26131|RS5_METTH 30S RIBOSOMAL PROTEIN S5P >gi|2621060 (AE000796) ribosomal
            protein S2 (E.coli S5) [Methanobacterium thermoautotrophicum]
            Length = 216
	    Score = 402 (141.5 bits), Expect = 9.7e-37, P = 9.7e-37
  =>sp|P26815|RS5_HALMA 30S RIBOSOMAL PROTEIN S5 (HMAS5) >pir||S16542 ribosomal
            protein S5 - Haloarcula marismortui >bbs|77816 ribosomal protein S5
            [Halobacterium marismortui, Peptide, 212 aa] >gi|48868 (X58395)
            ribosomal protein [Haloarcula marismortui] >prf||1718307H ribosomal
            protein S5 [Haloarcula marismortui]
            Length = 212
	    Score = 390 (137.3 bits), Expect = 1.8e-35, P = 1.8e-35
  =>sp|P14036|RS5_METVA 30S RIBOSOMAL PROTEIN S5 >pir||R3MX5 ribosomal protein S5
            - Methanococcus vannielii >gi|44768 (X16720) rpL15 (AA 1-225)
            [Methanococcus vannielii]
            Length = 225
	    Score = 383 (134.8 bits), Expect = 1.0e-34, P = 1.0e-34
  =>gi|2920829 (U92698) ribosomal protein S2 [Rattus norvegicus]
            Length = 121
	    Score = 333 (117.2 bits), Expect = 2.0e-29, P = 2.0e-29
  =>gi|2231145 (L81136) putative [Rattus norvegicus]
            Length = 149
	    Score = 254 (89.4 bits), Expect = 4.7e-21, P = 4.7e-21
  =>gnl|PID|d1022833 (AB002720) ribosomal protein S2 [Entamoeba histolytica]
            Length = 136
	    Score = 249 (87.7 bits), Expect = 1.6e-20, P = 1.6e-20
  =>gi|2983990 (AE000749) ribosomal protein S05 [Aquifex aeolicus]
            Length = 208
	    Score = 212 (74.6 bits), Expect = 1.3e-16, P = 1.3e-16
  =>sp|P02357|RS5_BACST 30S RIBOSOMAL PROTEIN S5 (BS5) >pir||R3BS5F ribosomal
            protein S5 - Bacillus stearothermophilus >gi|143417 (M57621)
            ribosomal protein S5 [Bacillus stearothermophilus]
            Length = 166
	    Score = 205 (72.2 bits), Expect = 7.3e-16, P = 7.3e-16
  =>pdb|1PKP|  Ribosomal Protein S5 (Prokaryotic)
            Length = 150
	    Score = 205 (72.2 bits), Expect = 7.3e-16, P = 7.3e-16
  =>sp|P21467|RS5_BACSU 30S RIBOSOMAL PROTEIN S5 (BS5) >gi|1044981 (L47971)
            ribosomal protein S5 [Bacillus subtilis] >gnl|PID|e1182066 (Z99104)
            ribosomal protein S5 [Bacillus subtilis]
            Length = 166
	    Score = 205 (72.2 bits), Expect = 7.3e-16, P = 7.3e-16
  =>sp|P27152|RS5_THETH 30S RIBOSOMAL PROTEIN S5 >gnl|PID|e208141 (X90765)
            ribosomal protein S5 [Thermus aquaticus]
            Length = 162
	    Score = 205 (72.2 bits), Expect = 7.3e-16, P = 7.3e-16
  =>pir||R3BS5S ribosomal protein S5 - Bacillus subtilis >gi|143575 (M31102) spc
            ORF1; S5 [Bacillus subtilis]
            Length = 165
	    Score = 200 (70.4 bits), Expect = 2.5e-15, P = 2.5e-15
  =>gi|2688396 (AE001152) ribosomal protein S5 (rpsE) [Borrelia burgdorferi]
            Length = 165
	    Score = 192 (67.6 bits), Expect = 1.8e-14, P = 1.8e-14
  =>gi|2766520 (AF036708) ribosomal protein S5 [Mycoplasma gallisepticum]
            Length = 221
	    Score = 192 (67.6 bits), Expect = 1.8e-14, P = 1.8e-14
  =>gi|971717 (F14512) ribosomal protein S2 [Sus scrofa]
           Length = 82
	    Score = 183 (64.4 bits), Expect = 2.2e-13, P = 2.2e-13
  =>sp|Q50301|RS5_MYCPN 30S RIBOSOMAL PROTEIN S5 >pir||S62804 ribosomal protein S5
            - Mycoplasma pneumoniae (SGC3) >pir||S73975 ribosomal protein S5 -
            Mycoplasma pneumoniae (SGC3) (ATCC 29342) >gi|1215706 (U34795) RpsE
            [Mycoplasma pneumoniae] >gi|1674354 (AE000061) Mycoplasma
            pneumoniae, ribosomal protein S5; similar to Swiss-Prot Accession
            Number P02357, from B. subtilis [Mycoplasma pneumoniae]
            Length = 219
	    Score = 174 (61.3 bits), Expect = 2.5e-12, P = 2.5e-12
  =>gnl|PID|d1022832 (AB002719) ribosomal protein S2 [Entamoeba histolytica]
            Length = 88
	    Score = 174 (61.3 bits), Expect = 2.5e-12, P = 2.5e-12
  =>gi|3322469 (AE001202) ribosomal protein S5 (rpsE) [Treponema pallidum]
            Length = 172
	    Score = 171 (60.2 bits), Expect = 5.6e-12, P = 5.6e-12
  =>sp|P47414|RS5_MYCGE 30S RIBOSOMAL PROTEIN S5 >pir||F64218 ribosomal protein S5
            - Mycoplasma genitalium (SGC3) >gi|1045852 (U39695) ribosomal
            protein S5 [Mycoplasma genitalium]
            Length = 211
	    Score = 169 (59.5 bits), Expect = 9.4e-12, P = 9.4e-12
  =>sp|O33000|RS5_MYCLE 30S RIBOSOMAL PROTEIN S5 >gnl|PID|e337977 (Z98756)
            ribosomal protein S5 [Mycobacterium leprae]
            Length = 217
	    Score = 153 (53.9 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
  =>gnl|PID|d1026747 (AB007147) ribosomal protein S2 [Homo sapiens]
            Length = 78
	    Score = 166 (58.4 bits), Expect = 2.1e-11, P = 2.1e-11
  =>sp|P44374|RS5_HAEIN 30S RIBOSOMAL PROTEIN S5 >pir||D64094 ribosomal protein S5
            (rpS5) homolog - Haemophilus influenzae (strain Rd KW20)
            >gi|1573805 (U32762) ribosomal protein S5 (rpS5) [Haemophilus
            influenzae Rd]
            Length = 166
	    Score = 164 (57.7 bits), Expect = 3.5e-11, P = 3.5e-11
  =>sp|P56012|RS5_HELPY 30S RIBOSOMAL PROTEIN S5 >gi|2314466 (AE000633) ribosomal
            protein S5 (rps5) [Helicobacter pylori]
            Length = 153
	    Score = 164 (57.7 bits), Expect = 3.5e-11, P = 3.5e-11
  =>gnl|PID|e293131 (Z84395) rpsE [Mycobacterium tuberculosis]
            Length = 220
	    Score = 163 (57.4 bits), Expect = 4.6e-11, P = 4.6e-11
  =>sp|P33105|RS5_MICLU 30S RIBOSOMAL PROTEIN S5 >pir||S29888 Ribosomal protein S5
            - Micrococcus luteus >gi|44432 (X17524) S5 protein [Micrococcus
            luteus]
            Length = 183
	    Score = 162 (57.0 bits), Expect = 6.0e-11, P = 6.0e-11
  =>sp|P28543|RS5_CHLTR 30S RIBOSOMAL PROTEIN S5 >pir||A45192 ribosomal protein S5
            - Chlamydia trachomatis >gi|144627 (M80325) ribosomal protein
            CtrS5e [Chlamydia trachomatis] >gi|3328949 (AE001323) S5 Ribosomal
            Protein [Chlamydia trachomatis]
            Length = 165
	    Score = 161 (56.7 bits), Expect = 7.7e-11, P = 7.7e-11
  =>gnl|PID|e1234851 (AJ223237) ribosomal protein S5 [Salmonella typhimurium]
            Length = 167
	    Score = 159 (56.0 bits), Expect = 1.3e-10, P = 1.3e-10
  =>sp|P02356|RS5_ECOLI 30S RIBOSOMAL PROTEIN S5 >gi|42986 (X01563) S5 (rpSE) (aa
            1-167); pid:e [Escherichia coli] >gi|606237 (U18997) 30S ribosomal
            subunit protein S5 [Escherichia coli] >gi|1789699 (AE000408) 30S
            ribosomal subunit protein S5 [Escherichia coli]
            Length = 167
	    Score = 157 (55.3 bits), Expect = 2.2e-10, P = 2.2e-10
  =>sp|P46790|RS5_STRCO 30S RIBOSOMAL PROTEIN S5
            Length = 167
	    Score = 157 (55.3 bits), Expect = 2.2e-10, P = 2.2e-10
  =>pir||R3EC5 ribosomal protein S5 - Escherichia coli
            Length = 166
	    Score = 157 (55.3 bits), Expect = 2.2e-10, P = 2.2e-10
  =>pir||S50003 S5 ribosomal protein - Streptomyces coelicolor
            Length = 167
	    Score = 157 (55.3 bits), Expect = 2.2e-10, P = 2.2e-10
  =>gnl|PID|e1254448 (X83011) S5 ribosomal protein [Streptomyces coelicolor]
            Length = 201
	    Score = 157 (55.3 bits), Expect = 2.2e-10, P = 2.2e-10
  =>gi|1707008 (U78721) 30S ribosomal protein S5 isolog [Arabidopsis thaliana]
            Length = 303
	    Score = 172 (60.5 bits), Expect = 2.9e-10, P = 2.9e-10
  =>sp|O24705|RS5_SYNP6 30S RIBOSOMAL PROTEIN S5 >dbj||AB000111_18 (AB000111) 30S
            ribosomal protein S5 [Synechococcus sp.]
            Length = 180
	    Score = 155 (54.6 bits), Expect = 3.7e-10, P = 3.7e-10
  =>sp|P10128|RS5_MYCCA 30S RIBOSOMAL PROTEIN S5 >pir||R3YM5C ribosomal protein S5
            - Mycoplasma capricolum (SGC3) >gi|44226 (X06414) ribosomal protein
            S5 (AA 1-250) [Mycoplasma capricolum]
            Length = 250
	    Score = 166 (58.4 bits), Expect = 5.0e-10, P = 5.0e-10
  =>gi|2661197 (U81044) ribosomal protein S5 [Guillardia theta]
            Length = 169
	    Score = 148 (52.1 bits), Expect = 2.3e-09, P = 2.3e-09
  =>sp|P23402|RR5_CYAPA CYANELLE 30S RIBOSOMAL PROTEIN S5 >pir||R3KT5 ribosomal
            protein S5 - Cyanophora paradoxa cyanelle >gi|336655 (M30487)
            ribosomal protein s5 [Cyanophora paradoxa] >gi|1016132 (U30821)
            ribosomal protein S5 [Cyanophora paradoxa]
            Length = 169
	    Score = 145 (51.0 bits), Expect = 4.9e-09, P = 4.9e-09
  =>sp|P73304|RS5_SYNY3 30S RIBOSOMAL PROTEIN S5 >gnl|PID|d1018066 (D90905) 30S
            ribosomal protein S5 [Synechocystis sp.]
            Length = 173
	    Score = 128 (45.1 bits), Expect = 3.8e-07, P = 3.8e-07
  =>sp|P46183|RS5_ACYKS 30S RIBOSOMAL PROTEIN S5 >pir||JC2283 ribosomal protein S5
            - Pea aphid symbiont bacterium >gnl|PID|d1007163 (D31786) ribosomal
            protein S5 [Acyrthosiphon kondoi endosymbiont]
            Length = 126
	    Score = 121 (42.6 bits), Expect = 2.3e-06, P = 2.3e-06
  =>gi|3025832 (AF055985) pyrrolidone-rich antigen [Onchocerca volvulus]
            Length = 93
	    Score = 68 (23.9 bits), Expect = 0.0019, Sum P(2) = 0.0019
  =>sp|Q10013|SMD1_CAEEL PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 (SNRNP
            CORE PROTEIN D1) (SM-D1) >gi|861268 (U28738) coded for by C.
            elegans cDNA CEESB71R;  similar to autoantigen small
            ribonucleoprotein SM-D (SP:RSMD_HUMAN, P13641) [Caenorhabditis
            elegans]
            Length = 126
	    Score = 94 (33.1 bits), Expect = 0.0021, P = 0.0021
  =>pir||S14978 glycine-rich protein (clone wN) - tomato >gnl|PID|e153042 (X55689)
            glycine-rich protein [Solanum lycopersicum]
            Length = 120
	    Score = 92 (32.4 bits), Expect = 0.0035, P = 0.0035
  =>gnl|PID|e153043 (X55691) glycine-rich protein [Solanum lycopersicum]
            Length = 99
	    Score = 92 (32.4 bits), Expect = 0.0035, P = 0.0035
  =>sp|Q01157|GRW1_LYCES GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN (CLONE W10-1)
            >gi|388257 (X55693) glycine-rich protein [Lycopersicon esculentum]
            Length = 43
	    Score = 92 (32.4 bits), Expect = 0.0035, P = 0.0035
  =>gnl|PID|e156085 (X55690) glycine-rich protein [Solanum lycopersicum]
            Length = 36
	    Score = 92 (32.4 bits), Expect = 0.0035, P = 0.0035
  =>gi|1658503 (U75467) Atu [Drosophila melanogaster]
            Length = 724
	    Score = 116 (40.8 bits), Expect = 0.0045, P = 0.0045
  =>pir||PQ0474 pistil extensin-like protein precursor (clone pMG02) - common
            tobacco (fragment)
            Length = 108
	    Score = 88 (31.0 bits), Expect = 0.0097, P = 0.0096
  =>gi|19917 (Z14014) Pistil extensin like protein, partial CDS only [Nicotiana
          tabacum]
          Length = 109
	    Score = 88 (31.0 bits), Expect = 0.0097, P = 0.0096
  =>gi|2317934 (U97553) unknown [murine herpesvirus 68]
            Length = 585
	    Score = 65 (22.9 bits), Expect = 0.010, Sum P(4) = 0.010
  =>gnl|PID|e1168894 (AJ002378) RSZp22 protein [Arabidopsis thaliana]
            Length = 200
	    Score = 93 (32.7 bits), Expect = 0.022, Sum P(2) = 0.022
  =>pir||S14977 glycine-rich protein (clone wM) - tomato >gi|19236 (X55688)
            glycine-rich protein [Lycopersicon esculentum]
            Length = 132
	    Score = 92 (32.4 bits), Expect = 0.025, P = 0.024
  =>pir||S51056 ribosomal protein S5 - Thermus aquaticus (fragments)
            Length = 43
	    Score = 83 (29.2 bits), Expect = 0.034, P = 0.033
  =>gnl|PID|e1308560 (AL031004) RSZp22 splicing factor [Arabidopsis thaliana]
            Length = 200
	    Score = 91 (32.0 bits), Expect = 0.040, Sum P(2) = 0.039
  =>gnl|PID|d1020349 (D86601) DEAD family RNA helicase; germ cell specific in
            Bombyx 5th instar larva, a material factor [Bombyx mori]
            Length = 601
	    Score = 103 (36.3 bits), Expect = 0.040, Sum P(2) = 0.039
  =>pir||I52626 gene TLS-ERG protein - human (fragment) >bbs|165810 (S77574)
            TLS-ERG=fusion gene [human, acute non-lymphocytic leukemia cell
            lines IRTA17 and IRT21, Peptide Partial, 70 aa] [Homo sapiens]
            Length = 70
	    Score = 82 (28.9 bits), Expect = 0.043, P = 0.042
  =>gi|2078483 (U43200) antifreeze glycopeptide AFGP polyprotein precursor
            [Boreogadus saida]
            Length = 507
	    Score = 104 (36.6 bits), Expect = 0.062, P = 0.060
  =>gi|669028 (U20864) similar to S. cerevisiae hypothetical protein in PEP3 5'
           region (PIR:S29093); glycine-rich [Caenorhabditis elegans]
           Length = 123
	    Score = 87 (30.6 bits), Expect = 0.062, P = 0.060
  =>gi|2313699 (AE000571) H. pylori predicted coding region HP0582 [Helicobacter
            pylori]
            Length = 324
	    Score = 95 (33.4 bits), Expect = 0.071, Sum P(2) = 0.069
  =>pir||I54837 SmD homolog, liver - mouse (fragment) >bbs|150447 (S71494) SmD
            homolog {Gly-Arg repeat} [mice, liver, Peptide Partial, 59 aa] [Mus
            sp.]
            Length = 59
	    Score = 80 (28.2 bits), Expect = 0.072, P = 0.069
  =>gnl|PID|e1297831 (Z81525) F33A8.3 [Caenorhabditis elegans]
            Length = 208
	    Score = 97 (34.1 bits), Expect = 0.076, P = 0.073
  =>sp|Q10234|RT05_SCHPO PROBABLE MITOCHONDRIAL 40S RIBOSOMAL PROTEIN S5
            >gnl|PID|e223738 (Z69727) probable ribosomal protein
            [Schizosaccharomyces pombe]
            Length = 387
	    Score = 101 (35.6 bits), Expect = 0.091, P = 0.087
  =>pir||PQ0475 pistil extensin-like protein (clone pMG04) - common tobacco
            (fragment) >gi|19919 (Z14020) Pistil extensin like protein, partial
            CDS only [Nicotiana tabacum]
            Length = 171
	    Score = 94 (33.1 bits), Expect = 0.092, P = 0.088
  =>gi|1914851 (U92454) WW domain binding protein 5; WBP5 [Mus musculus]
            Length = 61
	    Score = 79 (27.8 bits), Expect = 0.093, P = 0.089

>CcruzaQ_739 has the following protein neighbors:
Sequence,   
  =>gi|3158469 (AF067216) No definition line found [Caenorhabditis elegans]
            Length = 301
	    Score = 73 (25.7 bits), Expect = 0.00016, Sum P(3) = 0.00016

>CcruzaQ_3028 has the following protein neighbors:
Sequence,   
  =>sp|Q06559|RS3_DROME 40S RIBOSOMAL PROTEIN S3 >pir||S35620 ribosomal protein S3
            - fruit fly (Drosophila melanogaster) >gi|290275 (L13690) ribosomal
            protein S3/AP endonuclease DNA repair protein [Drosophila
            melanogaster]
            Length = 246
	    Score = 543 (191.1 bits), Expect = 2.2e-62, Sum P(2) = 2.2e-62
  =>gnl|PID|e1292706 (AL023554) 40S ribosomal protein [Schizosaccharomyces pombe]
            Length = 249
	    Score = 514 (180.9 bits), Expect = 9.5e-62, Sum P(2) = 9.5e-62
  =>sp|P05750|RS3_YEAST 40S RIBOSOMAL PROTEIN S3 (YS3) (RP13) >pir||S48510
            ribosomal protein S3.e - yeast (Saccharomyces cerevisiae)
            >gnl|PID|d1005513 (D25285) ribosomal protein YS3 [Saccharomyces
            cerevisiae] >gnl|PID|e239551 (Z71454) ORF YNL178w [Saccharomyces
            cerevisiae] >gi|1463121 (U34347) ribosomal protein S3
            [Saccharomyces cerevisiae]
            Length = 240
	    Score = 525 (184.8 bits), Expect = 4.1e-61, Sum P(2) = 4.1e-61
  =>pir||S32728 ribosomal protein S3 - fruit fly (Drosophila melanogaster)
            >gi|296094 (X72921) ribosomal protein S3 [Drosophila melanogaster]
            Length = 246
	    Score = 527 (185.5 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
  =>sp|P17073|RS3_RAT 40S RIBOSOMAL PROTEIN S3 >pir||S41170 ribosomal protein S3 -
            mouse >gi|57728 (X51536) ribosomal protein S3 (AA 1-243);
            pid:g57728 [Rattus rattus] >gi|439522 (X76772) ribosomal protein S3
            [Mus musculus]
            Length = 243
	    Score = 534 (188.0 bits), Expect = 2.2e-60, Sum P(2) = 2.2e-60
  =>sp|P02350|RS3A_XENLA 40S RIBOSOMAL PROTEIN S3A (S1A) >pir||R3XL3A ribosomal
            protein S3a - African clawed frog >gi|65091 (X57322) ribosomal
            protein S1a gene product [Xenopus laevis]
            Length = 246
	    Score = 534 (188.0 bits), Expect = 2.2e-60, Sum P(2) = 2.2e-60
  =>sp|P23396|RS3_HUMAN 40S RIBOSOMAL PROTEIN S3 >pir||R3HUS3 ribosomal protein S3
            - human >bbs|42659 (S42658) S3 ribosomal protein [human, colon,
            Peptide, 243 aa] [Homo sapiens] >gi|555941 (U14990) ribosomal
            protein S3 [Homo sapiens] >gi|555943 (U14991) ribosomal protein S3
            [Homo sapiens] >gi|555945 (U14992) ribosomal protein S3 [Homo
            sapiens]
            Length = 243
	    Score = 534 (188.0 bits), Expect = 2.8e-60, Sum P(2) = 2.8e-60
  =>gi|468426 (L31405) ribosomal protein S3 [Saccharomyces cerevisiae]
           Length = 240
	    Score = 516 (181.6 bits), Expect = 3.6e-60, Sum P(2) = 3.6e-60
  =>sp|P79891|RS3_AMBME 40S RIBOSOMAL PROTEIN S3 >bbs|179561 (S83098) ribosomal
            protein S3 [Ambystoma mexicanum=Mexican axolotls, embryos, Peptide,
            253 aa] [Ambystoma mexicanum]
            Length = 253
	    Score = 531 (186.9 bits), Expect = 5.8e-60, Sum P(2) = 5.8e-60
  =>sp|P47835|RS3B_XENLA 40S RIBOSOMAL PROTEIN S3B (S1B) >pir||I51635 ribosomal
            protein S1 - African clawed frog >gi|587600 (Z34530) ribosomal
            protein S1 [Xenopus laevis] >gi|587602 (Z34529) ribosomal protein
            [Xenopus laevis]
            Length = 246
	    Score = 530 (186.6 bits), Expect = 5.8e-60, Sum P(2) = 5.8e-60
  =>pir||R3RT3 ribosomal protein S3 - rat
            Length = 243
	    Score = 529 (186.2 bits), Expect = 7.4e-60, Sum P(2) = 7.4e-60
  =>gi|32532 (X55715) ribosomal protein s3 [Homo sapiens]
          Length = 243
	    Score = 529 (186.2 bits), Expect = 9.5e-60, Sum P(2) = 9.5e-60
  =>sp|P48153|RS3_MANSE 40S RIBOSOMAL PROTEIN S3 >gi|527680 (U12708) ribosomal
            protein S3 [Manduca sexta]
            Length = 243
	    Score = 517 (182.0 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
  =>sp|P48152|RS3_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S3 >gi|1055070 (U39851)
            coded for by C. elegans cDNA CEMSE13F; coded for by C. elegans cDNA
            CEMSE13R; coded for by C. elegans cDNA CEMSG70F; coded for by C.
            elegans cDNA CEESL66F;  similar to ribosomal protein S3
            [Caenorhabditis elegans]
            Length = 247
	    Score = 457 (160.9 bits), Expect = 3.6e-52, Sum P(2) = 3.6e-52
  =>gi|1688320 (U78756) RpgG [Dictyostelium discoideum]
            Length = 218
	    Score = 454 (159.8 bits), Expect = 2.8e-50, Sum P(2) = 2.8e-50
  =>gi|347527 (L16016) ribosomal protein S3 [Homo sapiens]
           Length = 95
	    Score = 298 (104.9 bits), Expect = 1.0e-25, P = 1.0e-25
  =>gnl|PID|d1028864 (AB009525) 210aa long hypothetical 30S ribosomal protein S3
            [Pyrococcus horikoshii] >gnl|PID|d1031831 (AP000007) 210aa long
            hypothetical 30S ribosomal protein S3 [Pyrococcus horikoshii]
            Length = 210
	    Score = 253 (89.1 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
  =>gi|2621055 (AE000795) ribosomal protein S3 (E.coli S3) [Methanobacterium
            thermoautotrophicum]
            Length = 258
	    Score = 218 (76.7 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
  =>sp|P54034|RS3_METJA 30S RIBOSOMAL PROTEIN S3P >pir||E64357 ribosomal protein
            S3 - Methanococcus jannaschii >gi|1591163 (U67497) SSU ribosomal
            protein S3P (rpsC) [Methanococcus jannaschii]
            Length = 208
	    Score = 222 (78.1 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
  =>sp|P20281|RS3_HALMA 30S RIBOSOMAL PROTEIN S3 (HMAS3) (HS1) >pir||R3HS3S
            ribosomal protein S3 - Haloarcula marismortui >gi|148807 (J05222)
            ribosomal protein S3 [Haloarcula marismortui]
            Length = 304
	    Score = 209 (73.6 bits), Expect = 5.4e-20, Sum P(2) = 5.4e-20
  =>dbj||AB006961_9 (AB006961) ribosomal protein S3 [Halobacterium halobium]
            Length = 302
	    Score = 206 (72.5 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
  =>sp|P15009|RS3_HALHA 30S RIBOSOMAL PROTEIN S3 (HS4) (HHAS3) >pir||S11598
            ribosomal protein S3 - Halobacterium halobium
            Length = 302
	    Score = 200 (70.4 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
  =>gi|2648625 (AE000971) SSU ribosomal protein S3P (rps3P) [Archaeoglobus
            fulgidus]
            Length = 229
	    Score = 175 (61.6 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
  =>gi|65051 (V01441) ribosomal protein S1 [Xenopus laevis]
          Length = 125
	    Score = 107 (37.7 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
  =>gi|3328959 (AE001323) S3 Ribosomal Protein [Chlamydia trachomatis]
            Length = 224
	    Score = 126 (44.4 bits), Expect = 3.3e-05, P = 3.3e-05
  =>prf||1404256A ribosomal protein HS4 [Halobacterium halobium]
            Length = 83
	    Score = 108 (38.0 bits), Expect = 6.0e-05, P = 6.0e-05
  =>gi|1165309 (U43929) S3 [Bacillus subtilis]
            Length = 218
	    Score = 106 (37.3 bits), Expect = 0.00021, Sum P(2) = 0.00021
  =>sp|P55827|RS3_ACTAC 30S RIBOSOMAL PROTEIN S3 >gnl|PID|d1011609 (D64071)
            ribosomal protein S3 [Actinobacillus actinomycetemcomitans]
            Length = 235
	    Score = 110 (38.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
  =>sp|P21465|RS3_BACSU 30S RIBOSOMAL PROTEIN S3 (BS3) (BS2) >gnl|PID|d1009470
            (D50302) Ribosomal Protein S3 [Bacillus subtilis] >gnl|PID|e1182055
            (Z99104) ribosomal protein S3 (BS3) [Bacillus subtilis]
            Length = 218
	    Score = 102 (35.9 bits), Expect = 0.00065, Sum P(2) = 0.00065
  =>sp|P44372|RS3_HAEIN 30S RIBOSOMAL PROTEIN S3 >pir||B64093 ribosomal protein S3
            (rpS3) homolog - Haemophilus influenzae (strain Rd KW20)
            >gi|1573793 (U32761) ribosomal protein S3 (rpS3) [Haemophilus
            influenzae Rd]
            Length = 235
	    Score = 107 (37.7 bits), Expect = 0.00075, Sum P(2) = 0.00075
  =>sp|P56365|RR3_CHLVU CHLOROPLAST 30S RIBOSOMAL PROTEIN S3 >gnl|PID|d1021584
            (AB001684) 30S ribosomal protein S3 [Chlorella vulgaris]
            Length = 231
	    Score = 108 (38.0 bits), Expect = 0.0051, P = 0.0050
  =>sp|P02352|RS3_ECOLI 30S RIBOSOMAL PROTEIN S3 >pir||R3EC3 ribosomal protein S3
            - Escherichia coli >gi|42832 (X02613) ribosomal protein S3 (rpsC)
            (aa 1-233) [Escherichia coli] >gi|606248 (U18997) 30S ribosomal
            subunit protein S3 [Escherichia coli] >gi|1789710 (AE000408) 30S
            ribosomal subunit protein S3 [Escherichia coli]
            Length = 233
	    Score = 99 (34.8 bits), Expect = 0.0053, Sum P(2) = 0.0053
  =>gi|3322459 (AE001202) ribosomal protein S3 (rpsC) [Treponema pallidum]
            Length = 247
	    Score = 102 (35.9 bits), Expect = 0.0077, Sum P(2) = 0.0077
  =>gi|2982772 (AE000669) ribosomal protein S03 [Aquifex aeolicus]
            Length = 212
	    Score = 105 (37.0 bits), Expect = 0.0089, P = 0.0088
  =>sp|P56010|RS3_HELPY 30S RIBOSOMAL PROTEIN S3 >gi|2314475 (AE000633) ribosomal
            protein S3 (rps3) [Helicobacter pylori]
            Length = 234
	    Score = 106 (37.3 bits), Expect = 0.0090, P = 0.0090
  =>sp|P46172|RS3_ACYKS 30S RIBOSOMAL PROTEIN S3 >pir||PC2191 ribosomal protein S3
            - pea aphid symbiont bacterium (fragment) >gnl|PID|d1007152
            (D31786) ribosomal protein S3 [Acyrthosiphon kondoi endosymbiont]
            Length = 205
	    Score = 102 (35.9 bits), Expect = 0.018, P = 0.018
  =>sp|P46772|RS3_THEMA 30S RIBOSOMAL PROTEIN S3 >pir||S40194 ribosomal protein S3
            - Thermotoga maritima >gi|581804 (Z21677) ribosomal protein S3
            [Thermotoga maritima]
            Length = 209
	    Score = 101 (35.6 bits), Expect = 0.026, P = 0.025
  =>sp|P23309|RS3_BACST 30S RIBOSOMAL PROTEIN S3 (BS2) >pir||S10613 ribosomal
            protein S3 - Bacillus stearothermophilus >gi|580921 (X54994)
            ribosomal protein S3 [Bacillus stearothermophilus]
            Length = 218
	    Score = 101 (35.6 bits), Expect = 0.029, P = 0.028
  =>sp|O31161|RS3_SPICI 30S RIBOSOMAL PROTEIN S3 >gi|2623862 (AF031160) ribosomal
            protein S3 [Spiroplasma citri]
            Length = 252
	    Score = 99 (34.8 bits), Expect = 0.069, P = 0.066
  =>bbs|117289 (S47241) putative DNA binding protein=son [human, placenta, Peptide
            Partial, 89 aa, segment 4 of 4] [Homo sapiens]
            Length = 89
	    Score = 80 (28.2 bits), Expect = 0.069, P = 0.067

>CcruzaQ_2602 has the following protein neighbors:
Sequence,   
  =>sp|P06660|HS85_TRYCR HEAT SHOCK LIKE 85 KD PROTEIN >gi|162111 (M15346) 85 kDa
            protein [Trypanosoma cruzi]
            Length = 704
	    Score = 959 (337.6 bits), Expect = 2.7e-135, Sum P(2) = 2.7e-135
  =>pir||A26125 heat shock protein 90 homolog - Trypanosoma cruzi
            Length = 704
	    Score = 954 (335.8 bits), Expect = 9.1e-135, Sum P(2) = 9.1e-135
  =>sp|P12861|HS83_TRYBB HEAT SHOCK PROTEIN 83 >pir||S08119 heat shock protein 83
            - Trypanosoma brucei brucei >gi|10443 (X14176) heat shock protein
            83 (AA 1 - 703) [Trypanosoma (Trypanozoon) brucei]
            Length = 703
	    Score = 812 (285.8 bits), Expect = 4.4e-118, Sum P(2) = 4.4e-118
  =>pir||A44983 heat shock protein 83 - Trypanosoma brucei
            Length = 703
	    Score = 812 (285.8 bits), Expect = 1.2e-117, Sum P(2) = 1.2e-117
  =>bbs|170935 recombinant Lbhsp83=83 kda heat shock protein [Leishmania
            braziliensis, Peptide, 656 aa]
            Length = 656
	    Score = 808 (284.4 bits), Expect = 4.1e-113, Sum P(2) = 4.1e-113
  =>pir||S57415 Hsp83 protein - Leishmania donovani infantum >gi|871399 (X87770)
            Hsp83 protein [Leishmania infantum]
            Length = 700
	    Score = 781 (274.9 bits), Expect = 1.2e-111, Sum P(2) = 1.2e-111
  =>sp|P27890|HS90_LEIDO HEAT SHOCK PROTEIN 90 (HSP 90) >pir||A44888 heat shock
            protein 90 - Leishmania donovani (fragment) >gi|159359 (M73492)
            heat shock protein 90 [Leishmania donovani]
            Length = 452
	    Score = 780 (274.6 bits), Expect = 6.7e-111, Sum P(2) = 6.7e-111
  =>sp|P27741|HS83_LEIAM HEAT SHOCK PROTEIN 83 (HSP 83) >pir||A44943 heat shock
            protein 83 - Leishmania mexicana amazonensis >gi|159354 (M92925)
            heat shock protein 83 [Leishmania amazonensis]
            Length = 701
	    Score = 778 (273.9 bits), Expect = 6.0e-110, Sum P(2) = 6.0e-110
  =>sp|P36182|HS82_TOBAC HEAT SHOCK PROTEIN 82 >pir||S18865 heat shock protein 82
            - common tobacco (fragment) >gi|19880 (X63195) heat shock protein
            82 [Nicotiana tabacum]
            Length = 499
	    Score = 610 (214.7 bits), Expect = 3.0e-85, Sum P(2) = 3.0e-85
  =>gnl|PID|d1001072 (D00710) heat-shock protein [Arabidopsis thaliana]
            Length = 700
	    Score = 611 (215.1 bits), Expect = 2.6e-84, Sum P(2) = 2.6e-84
  =>pir||A45508 heat shock protein 83 - Arabidopsis thaliana >gi|166770 (M62984)
            heat shock protein 83 [Arabidopsis thaliana]
            Length = 705
	    Score = 611 (215.1 bits), Expect = 2.6e-84, Sum P(2) = 2.6e-84
  =>prf||1908431A heat shock protein HSP81-1 [Arabidopsis thaliana]
            Length = 705
	    Score = 611 (215.1 bits), Expect = 2.6e-84, Sum P(2) = 2.6e-84
  =>sp|P27323|HS81_ARATH HEAT SHOCK PROTEIN 81-1 (HSP81-1) (HEAT SHOCK PROTEIN 83)
            Length = 700
	    Score = 611 (215.1 bits), Expect = 2.6e-84, Sum P(2) = 2.6e-84
  =>sp|P33126|HS82_ORYSA HEAT SHOCK PROTEIN 82 >pir||S25541 heat shock protein 82
            - rice (strain Taichung Native One) >gi|20256 (Z11920) heat shock
            protein 82 (HSP82) [Oryza sativa]
            Length = 699
	    Score = 602 (211.9 bits), Expect = 3.4e-84, Sum P(2) = 3.4e-84
  =>sp|P51819|HS83_PHANI HEAT SHOCK PROTEIN 83 >gi|169296 (M99431) heat shock
            protein 83 [Pharbitis nil] >prf||1909372A heat shock protein 83
            [Ipomoea nil]
            Length = 703
	    Score = 606 (213.3 bits), Expect = 4.3e-84, Sum P(2) = 4.3e-84
  =>sp|P36181|HS80_LYCES HEAT SHOCK COGNATE PROTEIN 80 >gi|170456 (M96549) heat
            shock cognate protein 80 [Solanum lycopersicum] >prf||1909348A heat
            shock protein hsp80 [Lycopersicon esculentum]
            Length = 699
	    Score = 599 (210.9 bits), Expect = 1.1e-83, Sum P(2) = 1.1e-83
  =>pir||A48426 heat shock protein HSP82 - maize >bbs|130886 (S59780) HSP82=82 kda
            heat shock protein [Zea mays, seedling, leaves, Peptide, 715 aa]
            [Zea mays]
            Length = 715
	    Score = 598 (210.5 bits), Expect = 2.4e-83, Sum P(2) = 2.4e-83
  =>sp|Q08277|HS82_MAIZE HEAT SHOCK PROTEIN 82
            Length = 715
	    Score = 598 (210.5 bits), Expect = 2.4e-83, Sum P(2) = 2.4e-83
  =>prf||1710352A heat shock protein 83 [Arabidopsis thaliana]
            Length = 705
	    Score = 601 (211.6 bits), Expect = 3.0e-83, Sum P(2) = 3.0e-83
  =>sp|P55737|HS82_ARATH HEAT SHOCK PROTEIN 81-2 (HSP81-2) >prf||1908431B heat
            shock protein HSP81-2 [Arabidopsis thaliana]
            Length = 699
	    Score = 594 (209.1 bits), Expect = 1.6e-82, Sum P(2) = 1.6e-82
  =>gnl|PID|e263435 (Y07613) heat shock protein 90A [Arabidopsis thaliana]
            Length = 704
	    Score = 608 (214.0 bits), Expect = 2.7e-82, Sum P(2) = 2.7e-82
  =>gnl|PID|e309143 (Y11827) heat shock protein [Arabidopsis thaliana]
            Length = 699
	    Score = 589 (207.3 bits), Expect = 3.0e-81, Sum P(2) = 3.0e-81
  =>gnl|PID|e308074 (Y11828) heat shock protein [Arabidopsis thaliana]
            Length = 699
	    Score = 576 (202.8 bits), Expect = 8.0e-81, Sum P(2) = 8.0e-81
  =>sp|P51818|HS83_ARATH HEAT SHOCK PROTEIN 81-3 (HSP81-3) >bbs|163637 (S77849)
            heat-shock Protein=HSP81-3 [Arabidopsis thaliana=thale-cress,
            Peptide, 699 aa] [Arabidopsis thaliana]
            Length = 699
	    Score = 577 (203.1 bits), Expect = 1.0e-80, Sum P(2) = 1.0e-80
  =>sp|P08238|HS9B_HUMAN HEAT SHOCK PROTEIN HSP 90-BETA (HSP 84) (HSP 90)
            >pir||HHHU84 heat shock protein 90-beta - human >gi|306891 (M16660)
            90kDa heat shock protein [Homo sapiens] >prf||1307197A heat shock
            protein 90kD [Homo sapiens]
            Length = 724
	    Score = 558 (196.4 bits), Expect = 2.1e-80, Sum P(2) = 2.1e-80
  =>gi|386786 (J04988) 90 kD heat shock protein [Homo sapiens]
           Length = 724
	    Score = 558 (196.4 bits), Expect = 2.1e-80, Sum P(2) = 2.1e-80
  =>gi|2792527 (AF042329) heat shock protein 90 [Eimeria tenella]
            Length = 713
	    Score = 557 (196.1 bits), Expect = 4.4e-80, Sum P(2) = 4.4e-80
  =>pir||HHMS84 heat shock protein 84 - mouse
            Length = 724
	    Score = 555 (195.4 bits), Expect = 4.4e-80, Sum P(2) = 4.4e-80
  =>gi|194027 (M36829) heat-shock protein hsp84 [Mus musculus]
           Length = 724
	    Score = 555 (195.4 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
  =>sp|P11499|HS9B_MOUSE HEAT SHOCK PROTEIN HSP 84 (TUMOR SPECIFIC TRANSPLANTATION
            84 KD ANTIGEN) (TSTA)
            Length = 724
	    Score = 555 (195.4 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
  =>gi|1438887 (U45449) heat shock protein 90 [Eimeria bovis]
            Length = 427
	    Score = 555 (195.4 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
  =>gi|3212009 (AF068772) heat shock protein hsp90beta [Danio rerio]
            Length = 724
	    Score = 559 (196.8 bits), Expect = 2.4e-79, Sum P(2) = 2.4e-79
  =>gi|309317 (M18186) 84 kD heat shock protein [Mus musculus]
           Length = 724
	    Score = 546 (192.2 bits), Expect = 3.9e-79, Sum P(2) = 3.9e-79
  =>gi|505338 (L34027) heat shock protein 86 [Plasmodium falciparum] >gi|2642495
           (AF030694) heat shock protein 86 [Plasmodium falciparum]
           Length = 745
	    Score = 577 (203.1 bits), Expect = 1.3e-78, Sum P(2) = 1.3e-78
  =>gi|505340 (L34028) heat shock protein 86 [Plasmodium falciparum]
           >prf||2104278A heat shock protein 90 [Plasmodium falciparum]
           Length = 747
	    Score = 577 (203.1 bits), Expect = 1.3e-78, Sum P(2) = 1.3e-78
  =>sp|Q04619|HS9B_CHICK HEAT SHOCK COGNATE PROTEIN HSP 90-BETA >pir||JC1468 heat
            shock protein 90 beta - chicken >gi|65322 (X70101) heat shock
            protein 90 beta [Gallus gallus]
            Length = 725
	    Score = 543 (191.1 bits), Expect = 1.3e-78, Sum P(2) = 1.3e-78
  =>sp|P24724|HS90_THEPA HEAT SHOCK PROTEIN 90 (HSP90) >gi|161875 (M57386) heat
            shock protein 90 [Theileria parva] >prf||2106315A heat shock
            protein 90kD [Theileria parva]
            Length = 721
	    Score = 565 (198.9 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
  =>sp|P11501|HS9A_CHICK HEAT SHOCK PROTEIN HSP 90-ALPHA >gi|63516 (X07265) heat
            shock protein 90 (AA 1 - 728) [Gallus gallus]
            Length = 728
	    Score = 567 (199.6 bits), Expect = 2.1e-78, Sum P(2) = 2.1e-78
  =>pir||HHCH90 heat shock protein 90 - chicken
            Length = 728
	    Score = 567 (199.6 bits), Expect = 2.1e-78, Sum P(2) = 2.1e-78
  =>gi|496249 (L32987) heat shock protein 90 [Pleurodeles waltl]
           Length = 542
	    Score = 548 (192.9 bits), Expect = 2.1e-78, Sum P(2) = 2.1e-78
  =>gi|1945447 (U94395) 90-kDa heat shock protein [Sus scrofa]
            Length = 733
	    Score = 564 (198.5 bits), Expect = 3.5e-78, Sum P(2) = 3.5e-78
  =>sp|P07900|HS9A_HUMAN HEAT SHOCK PROTEIN HSP 90-ALPHA (HSP 86) >gi|32488
            (X15183) 90 kDa heat-shock protein (AA 1-732) [Homo sapiens]
            Length = 732
	    Score = 563 (198.2 bits), Expect = 4.4e-78, Sum P(2) = 4.4e-78
  =>pir||HHHU86 heat shock protein 90-alpha - human >gi|703087 (M27024) heat shock
            protein [Homo sapiens]
            Length = 732
	    Score = 563 (198.2 bits), Expect = 4.4e-78, Sum P(2) = 4.4e-78
  =>gi|3287489 (AF028832) Hsp89-alpha-delta-N [Homo sapiens]
            Length = 539
	    Score = 563 (198.2 bits), Expect = 4.4e-78, Sum P(2) = 4.4e-78
  =>pir||S49155 heat-shock protein - Plasmodium falciparum >gi|510182 (Z29667)
            heat-shock protein [Plasmodium falciparum]
            Length = 745
	    Score = 571 (201.0 bits), Expect = 5.6e-78, Sum P(2) = 5.6e-78
  =>gi|2791863 (AF042108) heat shock protein 90-beta [Danio rerio]
            Length = 725
	    Score = 544 (191.5 bits), Expect = 7.2e-78, Sum P(2) = 7.2e-78
  =>sp|P07901|HS9A_MOUSE HEAT SHOCK PROTEIN HSP 86 (TUMOR SPECIFIC TRANSPLANTATION
            86 KD ANTIGEN) (TSTA) >pir||HHMS86 heat shock protein 86 - mouse
            >gi|309318 (J04633) heat shock protein 86 [Mus musculus]
            Length = 733
	    Score = 562 (197.8 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
  =>sp|P54651|HS9C_DICDI HEAT SHOCK COGNATE 90 KD PROTEIN >gi|899060 (L43591) heat
            shock cognate protein [Dictyostelium discoideum]
            Length = 700
	    Score = 571 (201.0 bits), Expect = 2.4e-77, Sum P(2) = 2.4e-77
  =>gi|3212011 (AF068773) heat shock protein hsp90alpha [Danio rerio]
            Length = 726
	    Score = 569 (200.3 bits), Expect = 2.4e-77, Sum P(2) = 2.4e-77
  =>sp|P46633|HS9A_CRIGR HEAT SHOCK PROTEIN HSP 90-ALPHA (HSP 86) >gi|495759
            (L33676) heat shock protein 90A [Cricetulus griseus]
            Length = 733
	    Score = 558 (196.4 bits), Expect = 3.9e-77, Sum P(2) = 3.9e-77
  =>gi|51457 (X16857) heat shock-like protein [Mus musculus]
          Length = 274
	    Score = 562 (197.8 bits), Expect = 6.4e-77, Sum P(2) = 6.4e-77
  =>gnl|PID|e1289600 (AJ005784) heat shock protein 90 [Brugia pahangi]
            Length = 717
	    Score = 544 (191.5 bits), Expect = 6.4e-77, Sum P(2) = 6.4e-77
  =>gnl|PID|e1301650 (AJ005785) heat shock protein 90 [Brugia pahangi]
            Length = 717
	    Score = 544 (191.5 bits), Expect = 6.4e-77, Sum P(2) = 6.4e-77
  =>gi|2804612 (U81165) MOD-E [Podospora anserina]
            Length = 701
	    Score = 556 (195.7 bits), Expect = 1.0e-76, Sum P(2) = 1.0e-76
  =>sp|P02828|HS83_DROME HEAT SHOCK PROTEIN 83 (HSP 82) >pir||HHFF83 heat shock
            protein 83 - fruit fly (Drosophila melanogaster) >gnl|PID|e1172580
            (X03810) hsp 82 [Drosophila melanogaster]
            Length = 717
	    Score = 551 (194.0 bits), Expect = 2.7e-76, Sum P(2) = 2.7e-76
  =>sp|P40292|HS82_ASPFU HEAT SHOCK PROTEIN HSP1 (65 KD IGE-BINDING PROTEIN)
            >gi|1930153 (U92465) heat shock protein [Aspergillus fumigatus]
            Length = 441
	    Score = 565 (198.9 bits), Expect = 5.7e-76, Sum P(2) = 5.7e-76
  =>gi|2062377 (U75687) heat shock protein 83 [Drosophila auraria]
            Length = 716
	    Score = 543 (191.1 bits), Expect = 7.2e-76, Sum P(2) = 7.2e-76
  =>sp|P34058|HS9B_RAT HEAT SHOCK PROTEIN HSP 90-BETA (HSP 84) >bbs|114940
            (S45392) heat shock protein 90, hsp90 [rats, brain, Peptide, 724
            aa] [Rattus sp.]
            Length = 724
	    Score = 510 (179.5 bits), Expect = 2.4e-75, Sum P(2) = 2.4e-75
  =>gi|1066807 (L47285) heat shock protein 82 [Anopheles albimanus] >gi|1066808
            (L47285) heat shock protein 82 [Anopheles albimanus]
            Length = 721
	    Score = 548 (192.9 bits), Expect = 4.5e-74, Sum P(2) = 4.5e-74
  =>pir||A61073 heat shock protein 90 homolog - yeast (Candida albicans)
            (fragment) >prf||1607205A 47kD antigen [Candida albicans]
            Length = 395
	    Score = 528 (185.9 bits), Expect = 4.5e-74, Sum P(2) = 4.5e-74
  =>sp|P46598|HS90_CANAL HEAT SHOCK PROTEIN 90 HOMOLOG >gi|994798 (X81025) heat
            shock protein 90 [Candida albicans]
            Length = 707
	    Score = 528 (185.9 bits), Expect = 4.5e-74, Sum P(2) = 4.5e-74
  =>gi|1899173 (U89945) heat shock protein hsp90 [Oncorhynchus tshawytscha]
            Length = 726
	    Score = 553 (194.7 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
  =>gnl|PID|e348327 (Z75530) C47E8.5 [Caenorhabditis elegans]
            Length = 702
	    Score = 547 (192.6 bits), Expect = 3.1e-73, Sum P(2) = 3.1e-73
  =>sp|P02829|HS82_YEAST HEAT SHOCK PROTEIN HSP82 >pir||HHBY90 heat shock protein
            90 - yeast (Saccharomyces cerevisiae) >gi|171725 (K01387) hsp82
            protein [Saccharomyces cerevisiae] >gi|1061249 (Z67751)
            HSP90/HSP82? [Saccharomyces cerevisiae] >gnl|PID|e246948 (Z73596)
            ORF YPL240c [Saccharomyces cerevisiae]
            Length = 709
	    Score = 529 (186.2 bits), Expect = 3.5e-72, Sum P(2) = 3.5e-72
  =>sp|P15108|HS83_YEAST HEAT SHOCK COGNATE PROTEIN HSC82 >pir||S55133 heat shock
            protein HSP82 - yeast (Saccharomyces cerevisiae) >gi|854456
            (Z49808) Hsc82p [Saccharomyces cerevisiae]
            Length = 705
	    Score = 527 (185.5 bits), Expect = 5.7e-72, Sum P(2) = 5.7e-72
  =>sp|P41887|HS90_SCHPO HEAT SHOCK PROTEIN 90 HOMOLOG >pir||S51795 heat shock
            protein 90 - fission yeast (Schizosaccharomyces pombe) >gi|623613
            (L35550) heat shock protein 90 [Schizosaccharomyces pombe]
            Length = 704
	    Score = 515 (181.3 bits), Expect = 6.5e-71, Sum P(2) = 6.5e-71
  =>gi|171723 (M26044) hsc82 protein [Saccharomyces cerevisiae]
           Length = 705
	    Score = 514 (180.9 bits), Expect = 1.3e-70, Sum P(2) = 1.3e-70
  =>pir||A45529 heat shock protein 86 - fluke (Schistosoma mansoni) (fragment)
            >gi|161028 (J04017) heat shock protein 86 [Schistosoma mansoni]
            Length = 442
	    Score = 495 (174.2 bits), Expect = 2.5e-69, Sum P(2) = 2.5e-69
  =>sp|P08712|ENPL_MESAU ENDOPLASMIN (94 KD GLUCOSE-REGULATED PROTEIN) (GRP94)
            >pir||A26258 endoplasmin - hamster (fragment) >gi|49628 (X04850)
            glucose regulated protein 94 (400 AA) [Mesocricetus auratus]
            Length = 400
	    Score = 423 (148.9 bits), Expect = 2.2e-58, Sum P(2) = 2.2e-58
  =>gi|168256 (M55629) heat shock protein 82 [Histoplasma capsulatum]
           Length = 677
	    Score = 267 (94.0 bits), Expect = 5.1e-58, Sum P(3) = 5.1e-58
  =>sp|P33125|HS82_AJECA HEAT SHOCK PROTEIN 82 >pir||S21764 heat shock protein 82
            - Ajellomyces capsulata
            Length = 679
	    Score = 267 (94.0 bits), Expect = 5.2e-58, Sum P(3) = 5.2e-58
  =>sp|P41148|ENPL_CANFA ENDOPLASMIN PRECURSOR (94 KD GLUCOSE-REGULATED PROTEIN)
            (GRP94) >pir||A53211 glucose-regulated protein GRP94 - dog
            >gi|403497 (U01153) GRP94 [Canis familiaris]
            Length = 804
	    Score = 422 (148.6 bits), Expect = 1.7e-56, Sum P(2) = 1.7e-56
  =>pir||S38902 protein kinase ppk98 (EC 2.7.1.-) - pig >gi|431944 (X76301) Ppk
            98; a protein kinase [Sus scrofa]
            Length = 804
	    Score = 421 (148.2 bits), Expect = 2.2e-56, Sum P(2) = 2.2e-56
  =>gnl|PID|e280589 (Y09136) gp96/GRP94 [Sus scrofa]
            Length = 804
	    Score = 421 (148.2 bits), Expect = 2.2e-56, Sum P(2) = 2.2e-56
  =>gi|984249 (X90848) protein kinase [Sus scrofa]
           Length = 808
	    Score = 421 (148.2 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
  =>sp|P08113|ENPL_MOUSE ENDOPLASMIN PRECURSOR (ENDOPLASMIC RETICULUM PROTEIN 99)
            (94 KD GLUCOSE-REGULATED PROTEIN) (GRP94) (ERP99) (POLYMORPHIC
            TUMOR REJECTION ANTIGEN 1) (GP96) >pir||A29317 endoplasmic
            reticulum protein 99 precursor - mouse >gi|309220 (J03297)
            endoplasmic reticulum transmembrane protein precursor [Mus
            musculus]
            Length = 802
	    Score = 419 (147.5 bits), Expect = 2.8e-56, Sum P(2) = 2.8e-56
  =>gi|2262098 (AC002343) HSP90 isolog [Arabidopsis thaliana]
            Length = 335
	    Score = 386 (135.9 bits), Expect = 2.8e-56, Sum P(2) = 2.8e-56
  =>sp|P14625|ENPL_HUMAN ENDOPLASMIN PRECURSOR (94 KD GLUCOSE-REGULATED PROTEIN)
            (GRP94) (GP96 HOMOLOG) (TUMOR REJECTION ANTIGEN 1) >pir||A35954
            endoplasmin precursor - human >gi|37261 (X15187) precursor
            polypeptide (AA -21 to 782) [Homo sapiens]
            Length = 803
	    Score = 418 (147.1 bits), Expect = 5.9e-56, Sum P(2) = 5.9e-56
  =>gi|63509 (X04961) hsp 108 [Gallus gallus]
          Length = 792
	    Score = 415 (146.1 bits), Expect = 3.9e-55, Sum P(2) = 3.9e-55
  =>sp|P08110|ENPL_CHICK ENDOPLASMIN PRECURSOR (HEAT SHOCK 108 KD PROTEIN)
            (HSP108) (TRANSFERRIN-BINDING PROTEIN) >pir||HHCH08 heat shock
            protein 108 precursor - chicken >gi|211943 (M14772) heat shock
            protein 108. [Gallus gallus]
            Length = 795
	    Score = 413 (145.4 bits), Expect = 6.6e-55, Sum P(2) = 6.6e-55
  =>sp|P20147|HS90_PLAFP HEAT SHOCK 90 KD PROTEIN HOMOLOG >pir||S01958 heat shock
            90K protein homolog - Plasmodium falciparum (fragment) >gi|829216
            (X13014) beta-D-galactosidase (193 AA) [Plasmodium falciparum]
            Length = 193
	    Score = 561 (197.5 bits), Expect = 1.4e-53, P = 1.4e-53
  =>gi|2581793 (AF001631) glucose-regulated protein GRP94 [Oryctolagus cuniculus]
            Length = 716
	    Score = 388 (136.6 bits), Expect = 9.0e-53, Sum P(2) = 9.0e-53
  =>sp|P35016|ENPL_CATRO ENDOPLASMIN HOMOLOG PRECURSOR (GRP94 HOMOLOG)
            >pir||S39558 HSP90 homolog - Madagascar periwinkle >gi|348696
            (L14594) heat shock protein 90 [Catharanthus roseus]
            Length = 817
	    Score = 370 (130.2 bits), Expect = 1.9e-52, Sum P(2) = 1.9e-52
  =>pir||I50255 108K heat shock protein - chicken >gi|211945 (M31321) 108K heat
            shock protein [Gallus gallus]
            Length = 795
	    Score = 389 (136.9 bits), Expect = 4.6e-52, Sum P(2) = 4.6e-52
  =>pir||I57523 HSP90 - mouse (fragment) >bbs|115722 (S46109) HSP90, HSP84=heat
            shock protein {C-terminal} [mice, heart, Peptide Partial, 194 aa]
            [Mus sp.]
            Length = 194
	    Score = 541 (190.4 bits), Expect = 1.8e-51, P = 1.8e-51
  =>sp|P36183|ENPL_HORVU ENDOPLASMIN HOMOLOG PRECURSOR (GRP94 HOMOLOG)
            >pir||S33533 heat shock protein 90 homolog precursor - barley
            >gi|22652 (X67960) GRP94 homologue [Hordeum vulgare]
            Length = 809
	    Score = 329 (115.8 bits), Expect = 1.2e-48, Sum P(2) = 1.2e-48
  =>gnl|PID|e218659 (Z68751) T05E11.3 [Caenorhabditis elegans]
            Length = 760
	    Score = 335 (117.9 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
  =>pir||S49340 heat-shock protein precursor - rye >pir||S65776 heat-shock
            protein, 82K, precursor - rye >gi|556673 (Z30243) heat-shock
            protein [Secale cereale]
            Length = 781
	    Score = 347 (122.2 bits), Expect = 3.8e-44, Sum P(2) = 3.8e-44
  =>gi|1906830 (Y11829) heat shock protein [Arabidopsis thaliana]
            Length = 768
	    Score = 339 (119.3 bits), Expect = 9.8e-44, Sum P(2) = 9.8e-44
  =>gnl|PID|d1014121 (D87666) heat shock protein 90 [Homo sapiens]
            Length = 151
	    Score = 442 (155.6 bits), Expect = 5.6e-41, P = 5.6e-41
  =>gnl|PID|e291987 (Z84177) by similarity to human sequence; expressed sequence
            tag [Sus scrofa]
            Length = 129
	    Score = 354 (124.6 bits), Expect = 1.2e-31, P = 1.2e-31
  =>gi|3273568 (AF038559) heat shock protein 90 [Cryptosporidium parvum]
            Length = 787
	    Score = 227 (79.9 bits), Expect = 8.1e-30, Sum P(2) = 8.1e-30
  =>sp|Q50667|HTPG_MYCTU HEAT SHOCK PROTEIN HTPG (HIGH TEMPERATURE PROTEIN G)
            >gnl|PID|e255052 (Z77163) htpG [Mycobacterium tuberculosis]
            Length = 647
	    Score = 191 (67.2 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
  =>sp|P46208|HTPG_BACSU HEAT SHOCK PROTEIN HTPG (HIGH TEMPERATURE PROTEIN G)
            >gnl|PID|d1022453 (AB005554) probable HtpG protein [Bacillus
            subtilis] >gnl|PID|e1184707 (Z99124) class III heat-shock protein
            (chaperonin) [Bacillus subtilis]
            Length = 626
	    Score = 193 (67.9 bits), Expect = 7.2e-26, Sum P(2) = 7.2e-26
  =>sp|O33012|HTPG_MYCLE HEAT SHOCK PROTEIN HTPG (HIGH TEMPERATURE PROTEIN G)
            >gnl|PID|e327747 (Z97369) HtpG protein [Mycobacterium leprae]
            Length = 656
	    Score = 177 (62.3 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
  =>gi|194029 (M57673) heat shock protein [Mus musculus]
           Length = 79
	    Score = 269 (94.7 bits), Expect = 1.2e-22, P = 1.2e-22
  =>gi|829283 (Z15018) heat shock protein hsp82 [Oryza sativa]
           Length = 87
	    Score = 257 (90.5 bits), Expect = 2.3e-21, P = 2.3e-21
  =>sp|P10413|HTPG_ECOLI HEAT SHOCK PROTEIN HTPG (HIGH TEMPERATURE PROTEIN G)
            (HEAT SHOCK PROTEIN C62.5) >pir||HHEC62 heat shock protein C62.5 -
            Escherichia coli >gi|145300 (M38777) htpG ORF [Escherichia coli]
            >gi|1773155 (U82664) heat shock protein HtpG [Escherichia coli]
            >gi|1786679 (AE000153) heat shock protein HtpG [Escherichia coli]
            Length = 624
	    Score = 175 (61.6 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
  =>sp|P56116|HTPG_HELPY HEAT SHOCK PROTEIN HTPG (HIGH TEMPERATURE PROTEIN G)
            >gi|2313300 (AE000541) chaperone and heat shock protein C62.5
            (htpG) [Helicobacter pylori]
            Length = 621
	    Score = 164 (57.7 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
  =>gnl|PID|e53283 (Z15024) hsp82 [Oryza sativa]
            Length = 72
	    Score = 219 (77.1 bits), Expect = 2.4e-17, P = 2.4e-17
  =>bbs|130038 (S58540) heat stress protein 80-1, HSP80-1 {C-terminal, internal
            fragment} [Neurospora crassa, mycelium, Peptide Partial, 157 aa,
            segment 1 of 2] [Neurospora crassa]
            Length = 157
	    Score = 216 (76.0 bits), Expect = 5.0e-17, P = 5.0e-17
  =>pir||A56820 heat stress protein 80-1 - Neurospora crassa (fragments)
            Length = 205
	    Score = 216 (76.0 bits), Expect = 5.0e-17, P = 5.0e-17
  =>gi|2865466 (AF043254) heat shock protein 75 [Homo sapiens]
            Length = 649
	    Score = 153 (53.9 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
  =>sp|P42555|HTPG_BORBU HEAT SHOCK PROTEIN HTPG (HIGH TEMPERATURE PROTEIN G)
            >gi|1272357 (U51878) hsp90 [Borrelia burgdorferi]
            Length = 616
	    Score = 149 (52.5 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
  =>gi|2688473 (AE001157) heat shock protein 90 (htpG) [Borrelia burgdorferi]
            Length = 650
	    Score = 149 (52.5 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
  =>pir||A55877 tumor necrosis factor type 1 receptor associated protein TRAP-1 -
            human >gi|687237 (U12595) tumor necrosis factor type 1 receptor
            associated protein [Homo sapiens]
            Length = 661
	    Score = 130 (45.8 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
  =>gi|3273383 (AC005203) TRAP1 [Homo sapiens]
            Length = 616
	    Score = 130 (45.8 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
  =>sp|P44516|HTPG_HAEIN HEAT SHOCK PROTEIN HTPG (HIGH TEMPERATURE PROTEIN G)
            >pir||G64048 heat shock protein C62.5 (htpG) homolog - Haemophilus
            influenzae (strain Rd KW20) >gi|1573053 (U32695) heat shock protein
            (htpG) [Haemophilus influenzae Rd]
            Length = 631
	    Score = 178 (62.7 bits), Expect = 2.9e-10, P = 2.9e-10
  =>sp|P54649|HTPG_ACTAC HEAT SHOCK PROTEIN HTPG (HIGH TEMPERATURE PROTEIN G)
            >pir||JC5230 heat-shock protein 90 homolog - Actinobacillus
            actinomycetemcomitans >gi|862902 (U26968) high temperature protein
            G [Haemophilus actinomycetemcomitans]
            Length = 626
	    Score = 176 (62.0 bits), Expect = 5.0e-10, P = 5.0e-10
  =>gi|972199 (F14697) heat shock protein 86 [Sus scrofa]
           Length = 95
	    Score = 148 (52.1 bits), Expect = 2.1e-09, P = 2.1e-09
  =>gi|3323305 (AE001265) heat shock protein 90 (htpG) [Treponema pallidum]
            Length = 639
	    Score = 162 (57.0 bits), Expect = 2.3e-08, P = 2.3e-08
  =>gi|459003 (U00036) similar to heat shock protein C62.5 [Caenorhabditis
           elegans]
           Length = 629
	    Score = 148 (52.1 bits), Expect = 9.1e-07, P = 9.1e-07
  =>gnl|PID|d1014120 (D87666) similar to uncharacterized gene: GenBank Accession
            Number H75980 [Homo sapiens]
            Length = 43
	    Score = 124 (43.7 bits), Expect = 1.0e-06, P = 1.0e-06
  =>pir||S55315 mucin (clone PGM-2A) - pig >pir||I47141 gastric mucin - pig
            (fragment) >gi|915208 (U10281) gastric mucin [Sus scrofa]
            Length = 528
	    Score = 115 (40.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
  =>gi|2429362 (AF020261) proline rich protein [Santalum album]
            Length = 326
	    Score = 136 (47.9 bits), Expect = 6.6e-06, P = 6.6e-06
  =>gi|1707247 (U80846) partial CDS [Caenorhabditis elegans]
            Length = 2378
	    Score = 125 (44.0 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
  =>gi|1657601 (U66220) unknown [Nannocystis exedens]
            Length = 290
	    Score = 133 (46.8 bits), Expect = 1.1e-05, P = 1.1e-05
  =>gi|3044086 (AF055904) unknown [Myxococcus xanthus]
            Length = 542
	    Score = 125 (44.0 bits), Expect = 0.00029, P = 0.00029
  =>gi|1518059 (U65650) blue-copper binging protein III [Arabidopsis thaliana]
            >gi|3395770 (AF039404) uclacyanin 3 [Arabidopsis thaliana]
            Length = 222
	    Score = 128 (45.1 bits), Expect = 1.8e-05, P = 1.8e-05
  =>gi|559557 (U14009) arabinogalactan-protein [Pyrus communis]
           Length = 145
	    Score = 110 (38.7 bits), Expect = 3.6e-05, P = 3.6e-05
  =>gi|508304 (L22305) corC [Medicago sativa]
           Length = 166
	    Score = 117 (41.2 bits), Expect = 4.2e-05, P = 4.2e-05
  =>gi|435039 (L17308) proline-rich cell wall protein [Gossypium hirsutum]
           Length = 214
	    Score = 124 (43.7 bits), Expect = 4.6e-05, P = 4.6e-05
  =>gi|451544 (U04267) proline-rich cell wall protein [Gossypium barbadense]
           Length = 214
	    Score = 124 (43.7 bits), Expect = 4.6e-05, P = 4.6e-05
  =>gi|1398927 (U56399) Hoxa3 gene product [Mus musculus]
            Length = 227
	    Score = 117 (41.2 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
  =>pir||B35363 synapsin Ib - human
            Length = 668
	    Score = 128 (45.1 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
  =>gi|553653 (M58378) synapsin Ib [Homo sapiens]
           Length = 670
	    Score = 128 (45.1 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
  =>pir||S22697 extensin - Volvox carteri (fragment) >gi|21992 (X65165) extensin
            [Volvox carteri]
            Length = 464
	    Score = 130 (45.8 bits), Expect = 6.3e-05, P = 6.3e-05
  =>sp|P17600|SYN1_HUMAN SYNAPSINS IA AND IB (BRAIN PROTEIN 4.1) >gi|338649
            (M58378) synapsin I [Homo sapiens]
            Length = 705
	    Score = 128 (45.1 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
  =>pir||A35363 synapsin I splice form a - human
            Length = 705
	    Score = 128 (45.1 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
  =>pir||S50755 hypothetical protein VSP-3 - Chlamydomonas reinhardtii >gi|530876
            (L29029) amino acid feature: Rod protein domain, aa 266 .. 468;
            amino acid feature: globular protein domain, aa 32 .. 265
            [Chlamydomonas reinhardtii]
            Length = 473
	    Score = 119 (41.9 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
  =>pir||S56117 spermatid-specific protein T2 precursor - longfin squid
            Length = 118
	    Score = 105 (37.0 bits), Expect = 0.00013, P = 0.00013
  =>sp|P08640|AMYH_YEAST GLUCOAMYLASE S1/S2 PRECURSOR (GLUCAN
            1,4-ALPHA-GLUCOSIDASE) (1,4-ALPHA-D-GLUCAN GLUCOHYDROLASE)
            >pir||S48478 glucan 1,4-alpha-glucosidase (EC 3.2.1.3) - yeast
            (Saccharomyces cerevisiae) >gi|557822 (Z38061) mal5, sta1, len:
            1367, CAI: 0.3, AMYH_YEAST P08640 GLUCOAMYLASE S1 (EC 3.2.1.3)
            [Saccharomyces cerevisiae] >gi|763364 (Z47047) Sta1p [Saccharomyces
            cerevisiae] >gi|1304387 (U30626) glucoamylase [Saccharomyces
            cerevisiae var. diastaticus]
            Length = 1367
	    Score = 125 (44.0 bits), Expect = 0.00094, P = 0.00094
  =>pir||PQ0477 pistil extensin-like protein (clone pMG09) - common tobacco
            (fragment)
            Length = 80
	    Score = 105 (37.0 bits), Expect = 0.00013, P = 0.00013
  =>pir||S35050 mucin JER28 - human
            Length = 187
	    Score = 118 (41.5 bits), Expect = 0.00013, P = 0.00013
  =>gi|188864 (M74027) mucin [Homo sapiens]
           Length = 573
	    Score = 116 (40.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
  =>pir||S55316 mucin (clone PGM-2B) - pig >gi|915207 (U10281) gastric mucin [Sus
            scrofa]
            Length = 317
	    Score = 98 (34.5 bits), Expect = 0.00021, Sum P(2) = 0.00021
  =>gi|2944066 (AF049588) synapsin I [Canis familiaris]
            Length = 415
	    Score = 125 (44.0 bits), Expect = 0.00019, P = 0.00019
  =>pir||S37593 mucin - human (fragment) >gi|407070 (X74954) mucin [Homo sapiens]
            Length = 187
	    Score = 116 (40.8 bits), Expect = 0.00023, P = 0.00023
  =>sp|P33479|IE18_PRVKA IMMEDIATE-EARLY PROTEIN IE180 >pir||A45344
            immediate-early protein - suid herpesvirus 1 (strain Kaplan)
            >gi|334071 (M34651) immediate-early protein [Pseudorabies virus]
            Length = 1446
	    Score = 104 (36.6 bits), Expect = 0.00024, Sum P(2) = 0.00024
  =>pir||A61052 heat shock protein 84 homolog, brain-specific - rat (fragment)
            Length = 32
	    Score = 102 (35.9 bits), Expect = 0.00027, P = 0.00027
  =>pir||S51939 chitinase (EC 3.2.1.14) precursor - beet >gi|488731 (X79301)
            chitinase [Beta vulgaris] >gi|829258 (X81056) Chitinase [Beta
            vulgaris]
            Length = 439
	    Score = 123 (43.3 bits), Expect = 0.00036, P = 0.00036
  =>pir||C34768 ORF2 protein - Orf virus (strain NZ2) >gi|332565 (M30023) ORF2
            [Orf virus]
            Length = 221
	    Score = 117 (41.2 bits), Expect = 0.00037, P = 0.00037
  =>pir||S53363 mucin 5AC (clone JER58) - human (fragment) >gi|563377 (Z34278)
            mucin [Homo sapiens]
            Length = 279
	    Score = 106 (37.3 bits), Expect = 0.00040, Sum P(2) = 0.00040
  =>pir||S50754 hypothetical protein WP6 - Chlamydomonas eugametos >gi|530878
            (L29028) amino acid feature: N-glycosylation sites, aa 41 .. 43, 46
            .. 48, 51 .. 53, 72 .. 74, 107 .. 109, 128 .. 130, 132 .. 134, 158
            .. 160, 163 .. 165; amino acid feature: Rod protein domain, aa 169
            .. 340; amino acid feature: globular pro...
            Length = 351
	    Score = 121 (42.6 bits), Expect = 0.00041, P = 0.00041
  =>pir||S08315 cell wall protein - maize (fragment) >gi|22269 (X13506) cell wall
            protein (108 AA) [Zea mays] >gi|168459 (M36914) cell wall protein
            (put.); putative [Zea mays]
            Length = 108
	    Score = 100 (35.2 bits), Expect = 0.00045, P = 0.00045
  =>sp|P09125|MSP8_EIMAC MEROZOITE SURFACE PROTEIN CMZ-8 >pir||S01704 merozoite
            surface antigen - Eimeria acervulina (fragment) >gi|9246 (X12445)
            EAMZp35 protein [Eimeria acervulina]
            Length = 259
	    Score = 118 (41.5 bits), Expect = 0.00047, P = 0.00047
  =>gi|168457 (M36913) cell wall protein (put.); putative [Zea mays]
           Length = 109
	    Score = 98 (34.5 bits), Expect = 0.00075, P = 0.00075
  =>pir||S49915 extensin-like protein - maize >gi|600118 (Z34465) extensin-like
            protein [Zea mays] >prf||2111476A extensin-like domain [Zea mays]
            Length = 1188
	    Score = 125 (44.0 bits), Expect = 0.00080, P = 0.00080
  =>gi|2653671 (U88587) 120 kDa style glycoprotein [Nicotiana alata]
            Length = 461
	    Score = 120 (42.2 bits), Expect = 0.00084, P = 0.00084
  =>sp|P02831|HXA3_MOUSE HOMEOBOX PROTEIN HOX-A3 (HOX-1.5) (MO-10)
            >gnl|PID|e307530 (Y11717) homeobox-containing transcription factor
            [Mus musculus]
            Length = 443
	    Score = 117 (41.2 bits), Expect = 0.00085, Sum P(2) = 0.00085
  =>gi|2708709 (AF038575) Wiskott-Aldrich Syndrome protein homolog
            [Schizosaccharomyces pombe]
            Length = 574
	    Score = 116 (40.8 bits), Expect = 0.00091, Sum P(2) = 0.00091
  =>gnl|PID|e339884 (Z98980) actin associated protein [Schizosaccharomyces pombe]
            Length = 574
	    Score = 116 (40.8 bits), Expect = 0.00091, Sum P(2) = 0.00091
  =>sp|P15265|MCS_MOUSE SPERM MITOCHONDRIAL CAPSULE SELENOPROTEIN (MCS)
            Length = 197
	    Score = 101 (35.6 bits), Expect = 0.00097, Sum P(2) = 0.00097
  =>bbs|169646 protamine [Monodonta turbinata, gonads, Peptide, 106 aa]
            Length = 106
	    Score = 94 (33.1 bits), Expect = 0.0020, P = 0.0020
  =>gi|2130539 (U78550) mucin MUC5B [Homo sapiens]
            Length = 328
	    Score = 82 (28.9 bits), Expect = 0.0015, Sum P(2) = 0.0015
  =>pir||PQ0452 extensin-like protein - Persian tobacco (strain S2S3) (fragment)
            Length = 122
	    Score = 95 (33.4 bits), Expect = 0.0016, P = 0.0016
  =>sp|P28968|VGLX_HSVEB GLYCOPROTEIN X PRECURSOR >pir||VGBEX1 glycoprotein X
            precursor - equine herpesvirus 1 (strain Ab4p) >gi|330862 (M86664)
            membrane glycoprotein [Equine herpesvirus 1]
            Length = 797
	    Score = 106 (37.3 bits), Expect = 0.0016, Sum P(2) = 0.0016
  =>gi|2822177 (AC004079) human HOXA3; 95% similarity to e307530 (PID:g1888441)
            [Homo sapiens]
            Length = 443
	    Score = 114 (40.1 bits), Expect = 0.0019, Sum P(2) = 0.0019
  =>gnl|PID|d1020845 (D88733) membrane glycoprotein [Equine herpesvirus 1]
            Length = 866
	    Score = 106 (37.3 bits), Expect = 0.0020, Sum P(2) = 0.0020
  =>gnl|PID|d1020846 (D88734) membrane glycoprotein [Equine herpesvirus 1]
            Length = 867
	    Score = 106 (37.3 bits), Expect = 0.0020, Sum P(2) = 0.0020
  =>sp|P15342|HSP2_HORSE SPERM HISTONE P2A (ST2A) >pir||S10754 protamine St2a -
            horse
            Length = 62
	    Score = 94 (33.1 bits), Expect = 0.0020, P = 0.0020
  =>gi|3153821 (AF062655) plenty-of-prolines-101; POP101; SH3-philo-protein [Mus
            musculus]
            Length = 897
	    Score = 120 (42.2 bits), Expect = 0.0021, P = 0.0021
  =>sp|O10341|Y091_NPVOP HYPOTHETICAL 29.3 KD PROTEIN (ORF92) >gi|1911338 (U75930)
            unknown [Orgyia pseudotsugata nuclear polyhedrosis virus]
            Length = 279
	    Score = 113 (39.8 bits), Expect = 0.0021, P = 0.0021
  =>gnl|PID|e244318 (Z72496) mucin MUC5B [Homo sapiens]
            Length = 3570
	    Score = 99 (34.8 bits), Expect = 0.0021, Sum P(2) = 0.0021
  =>gnl|PID|d1032554 (AB014518) KIAA0618 protein [Homo sapiens]
            Length = 999
	    Score = 120 (42.2 bits), Expect = 0.0024, P = 0.0024
  =>sp|Q10390|Y009_MYCTU HYPOTHETICAL 31.0 KD PROTEIN CY190.09C >gnl|PID|e233574
            (Z70283) mmpS3 [Mycobacterium tuberculosis]
            Length = 299
	    Score = 113 (39.8 bits), Expect = 0.0024, P = 0.0024
  =>pir||S35047 mucin JUL7 - human >gi|407082 (X74370) mucin [Homo sapiens]
            Length = 543
	    Score = 90 (31.7 bits), Expect = 0.0024, Sum P(3) = 0.0024
  =>prf||1814452C Hyp-rich glycoprotein [Zea diploperennis]
            Length = 349
	    Score = 114 (40.1 bits), Expect = 0.0025, P = 0.0025
  =>gi|1177622 (X89715) AOF1001 gene product [Saccharomyces cerevisiae]
            Length = 1001
	    Score = 85 (29.9 bits), Expect = 0.0026, Sum P(2) = 0.0026
  =>sp|P15340|HSP_CHICK SPERM HISTONE (PROTAMINE) (GALLINE) >pir||A34326 protamine
            - chicken >gi|609436 (L38713) protamine [Gallus gallus] >gi|609437
            (M28100) protamine [Gallus gallus]
            Length = 62
	    Score = 93 (32.7 bits), Expect = 0.0026, P = 0.0026
  =>pir||S25299 extensin precursor (clone Tom L-4) - tomato >gi|170444 (M76671)
            extensin (class II) [Lycopersicon esculentum]
            Length = 322
	    Score = 113 (39.8 bits), Expect = 0.0028, P = 0.0028
  =>gi|1118091 (U41557) histidine-rich [Caenorhabditis elegans]
            Length = 309
	    Score = 99 (34.8 bits), Expect = 0.020, Sum P(2) = 0.020
  =>pir||S14183 DNA-directed RNA polymerase (EC 2.7.7.6) largest chain (isoform C)
            - soybean (fragment) >gi|18736 (X52495) DNA-directed RNA polymerase
            [Glycine max]
            Length = 977
	    Score = 119 (41.9 bits), Expect = 0.0030, P = 0.0030
  =>gi|2088658 (AF002109) unknown protein [Arabidopsis thaliana]
            Length = 510
	    Score = 92 (32.4 bits), Expect = 0.0030, Sum P(2) = 0.0030
  =>pir||S24169 mucin - rat
            Length = 292
	    Score = 112 (39.4 bits), Expect = 0.0030, P = 0.0030
  =>gi|163715 (M27811) synapsin Ib [Bos taurus]
           Length = 670
	    Score = 117 (41.2 bits), Expect = 0.0031, P = 0.0031
  =>pir||F30411 synapsin Ib - bovine
            Length = 670
	    Score = 117 (41.2 bits), Expect = 0.0031, P = 0.0031
  =>gi|186396 (M94131) mucin [Homo sapiens]
           Length = 1270
	    Score = 113 (39.8 bits), Expect = 0.019, P = 0.018
  =>sp|P17599|SYN1_BOVIN SYNAPSINS IA AND IB >gi|163713 (M27810) synapsin Ia [Bos
            taurus]
            Length = 706
	    Score = 117 (41.2 bits), Expect = 0.0033, P = 0.0033
  =>pir||E30411 synapsin Ia - bovine
            Length = 706
	    Score = 117 (41.2 bits), Expect = 0.0033, P = 0.0033
  =>sp|P23246|PSF_HUMAN PTB-ASSOCIATED SPLICING FACTOR (PSF) >pir||A46302
            PTB-associated splicing factor, long form - human >gi|38458
            (X70944) PTB-associated splicing factor [Homo sapiens]
            Length = 707
	    Score = 117 (41.2 bits), Expect = 0.0033, P = 0.0033
  =>sp|P18616|RPB1_ARATH DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT (VERSION
            1) >pir||JDMU1 DNA-directed RNA polymerase (EC 2.7.7.6) II largest
            chain (version 1) - Arabidopsis thaliana >gi|16505 (X52954) RNA
            polymerase II [Arabidopsis thaliana]
            Length = 1841
	    Score = 114 (40.1 bits), Expect = 0.022, P = 0.022
  =>gi|459886 (M88463) seleno-protein [Mus musculus] >gi|567228 (M29603) capsule
           seleno-protein [Mus musculus]
           Length = 197
	    Score = 96 (33.8 bits), Expect = 0.0041, Sum P(2) = 0.0041
  =>pir||S22456 hydroxyproline-rich glycoprotein - perennial teosinte >gi|22092
            (X64173) hydroxyproline-rich glycoprotein [Zea diploperennis]
            Length = 350
	    Score = 112 (39.4 bits), Expect = 0.0043, P = 0.0043
  =>bbs|169196 T2=testis-specific pro-protamine [Loligo pealeii=squids, testis
            chromatin, Peptide, 79 aa]
            Length = 79
	    Score = 91 (32.0 bits), Expect = 0.0043, P = 0.0043
  =>sp|P15343|HSP3_HORSE SPERM HISTONE P2B (ST2B) >pir||S10755 protamine St2b -
            horse
            Length = 58
	    Score = 91 (32.0 bits), Expect = 0.0043, P = 0.0043
  =>gi|1657851 (U73214) cold acclimation protein WCOR518 [Triticum aestivum]
            Length = 315
	    Score = 111 (39.1 bits), Expect = 0.0046, P = 0.0046
  =>gnl|PID|e239514 (Z72514) T10B10.1 [Caenorhabditis elegans]
            Length = 428
	    Score = 113 (39.8 bits), Expect = 0.0046, P = 0.0046
  =>pir||A48018 mucin 7 precursor, salivary - human
            Length = 377
	    Score = 112 (39.4 bits), Expect = 0.0049, P = 0.0049
  =>sp|P16356|RPB1_CAEEL DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
            >pir||A34092 DNA-directed RNA polymerase (EC 2.7.7.6) II large
            chain - Caenorhabditis elegans >gi|156405 (M29235) RNA polymerase
            II [Caenorhabditis elegans]
            Length = 1859
	    Score = 118 (41.5 bits), Expect = 0.0051, Sum P(2) = 0.0050
  =>gi|1255805 (U53333) C. elegans DNA-directed RNA polymerase II large subunit
            (ama-1) (SP:P16356) [Caenorhabditis elegans]
            Length = 1862
	    Score = 118 (41.5 bits), Expect = 0.0051, Sum P(2) = 0.0051
  =>gi|3005587 (AF048977) Ser/Arg-related nuclear matrix protein [Homo sapiens]
            Length = 820
	    Score = 116 (40.8 bits), Expect = 0.0052, P = 0.0052
  =>sp|P17656|CC02_CAEEL CUTICLE COLLAGEN 2 >pir||B31219 collagen 2 -
            Caenorhabditis elegans >gi|6684 (V00148) Caenorhabditis elegans
            gene Col-2 coding for a collagen. [Caenorhabditis elegans]
            >gi|156262 (J01048) collagen [Caenorhabditis elegans]
            >gnl|PID|e214759 (Z68301) W01B6.7 [Caenorhabditis elegans]
            Length = 301
	    Score = 110 (38.7 bits), Expect = 0.0054, P = 0.0054
  =>pir||A25494 hydroxyproline-rich glycoprotein - tomato (fragment) >gi|170454
            (M11759) cell wall hydroxyproline-rich glycoprotein [Lycopersicon
            esculentum] >prf||1111324A glycoprotein,Hyp rich [Lycopersicon
            esculentum]
            Length = 93
	    Score = 90 (31.7 bits), Expect = 0.0057, P = 0.0056
  =>sp|P32323|AGA1_YEAST A-AGGLUTININ ATTACHMENT SUBUNIT PRECURSOR >pir||A41258
            a-agglutinin core protein AGA1 - yeast (Saccharomyces cerevisiae)
            >gi|170964 (M60590) a-agglutinin core subunit [Saccharomyces
            cerevisiae] >gnl|PID|e239834 (Z71659) ORF YNR044w [Saccharomyces
            cerevisiae]
            Length = 725
	    Score = 115 (40.5 bits), Expect = 0.0058, P = 0.0057
  =>pir||S52994 arabinogalactan-like protein - loblolly pine >gi|607771 (U09554)
            arabinogalactan-like protein [Pinus taeda]
            Length = 168
	    Score = 103 (36.3 bits), Expect = 0.0059, P = 0.0059
  =>pir||S53504 extensin-like protein S3 - alfalfa >gi|535586 (L36120) proline
            rich protein [Medicago sativa]
            Length = 228
	    Score = 107 (37.7 bits), Expect = 0.0063, P = 0.0063
  =>pir||PQ0475 pistil extensin-like protein (clone pMG04) - common tobacco
            (fragment) >gi|19919 (Z14020) Pistil extensin like protein, partial
            CDS only [Nicotiana tabacum]
            Length = 171
	    Score = 103 (36.3 bits), Expect = 0.0066, P = 0.0065
  =>bbs|118582 (S49657) mitochondrial capsule selenoprotein; MCS [Mus sp.]
            Length = 194
	    Score = 94 (33.1 bits), Expect = 0.0068, Sum P(2) = 0.0067
  =>sp|P35084|RPB1_DICDI DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
            >pir||A56823 DNA-directed RNA polymerase (EC 2.7.7.6) II largest
            subunit - slime mold (Dictyostelium discoideum) (fragment)
            >bbs|122922 (S52651) RNA polymerase II largest subunit {C-terminal}
            [Dictyostelium discoideum, Peptide Partial, 902 aa] [Dictyostelium
            discoideum]
            Length = 902
	    Score = 110 (38.7 bits), Expect = 0.027, P = 0.027
  =>pir||S14182 DNA-directed RNA polymerase (EC 2.7.7.6) largest chain (isoform
            B2) - soybean (fragment)
            Length = 491
	    Score = 112 (39.4 bits), Expect = 0.0073, P = 0.0073
  =>gi|18734 (X52493) DNA-directed RNA polymerase [Glycine max]
          Length = 494
	    Score = 112 (39.4 bits), Expect = 0.0074, P = 0.0074
  =>pir||C41132 collagen-related protein 3 precursor - Hydra magnipapillata
            >pir||S21931 mini-collagen - Hydra sp >gi|9451 (X61047)
            mini-collagen [Hydra sp.]
            Length = 186
	    Score = 104 (36.6 bits), Expect = 0.0074, P = 0.0074
  =>sp|P41479|Y091_NPVAC HYPOTHETICAL 24.1 KD PROTEIN IN LEF4-P33 INTERGENIC
            REGION >gi|559160 (L22858) GRAIL score: null; cap site and late
            promoter motifs present upstream; putative [Autographa californica
            nuclear polyhedrosis virus]
            Length = 224
	    Score = 106 (37.3 bits), Expect = 0.0079, P = 0.0079
  =>sp|P13983|EXTN_TOBAC EXTENSIN PRECURSOR (CELL WALL HYDROXYPROLINE-RICH
            GLYCOPROTEIN) >pir||S06733 hydroxyproline-rich glycoprotein
            precursor - common tobacco >gi|19867 (X13885) extensin (AA 1-620)
            [Nicotiana tabacum]
            Length = 620
	    Score = 112 (39.4 bits), Expect = 0.0079, Sum P(2) = 0.0079
  =>pir||B30411 synapsin Ib - rat >gi|206933 (M27924) synapsin Ib [Rattus
            norvegicus]
            Length = 668
	    Score = 113 (39.8 bits), Expect = 0.0086, P = 0.0086
  =>pir||C55663 oligodendrocyte-specific proline-rich protein 2 - human
            >gnl|PID|d1006205 (D28114) MOBP [Homo sapiens]
            Length = 183
	    Score = 103 (36.3 bits), Expect = 0.0091, P = 0.0091
  =>pir||A30411 synapsin Ia - rat >gi|206921 (M27812) synapsin Ia [Rattus
            norvegicus]
            Length = 704
	    Score = 113 (39.8 bits), Expect = 0.0092, P = 0.0092
  =>sp|P09951|SYN1_RAT SYNAPSINS IA AND IB
            Length = 704
	    Score = 113 (39.8 bits), Expect = 0.0092, P = 0.0092
  =>pir||I51920 mucin - rhesus macaque (fragment) >gi|437055 (U00483) mucin
            [Macaca mulatta]
            Length = 216
	    Score = 105 (37.0 bits), Expect = 0.0093, P = 0.0092
  =>gi|780297 (L41675) protein 11 xV [Human T-cell lymphotropic virus type 2]
           Length = 83
	    Score = 88 (31.0 bits), Expect = 0.0093, P = 0.0093
  =>pir||G58208 protamine I - black rat snake
            Length = 41
	    Score = 57 (20.1 bits), Expect = 0.010, Sum P(2) = 0.010
  =>prf||1707318A Thr rich extensin [Zea mays]
            Length = 251
	    Score = 106 (37.3 bits), Expect = 0.011, P = 0.011
  =>sp|P40603|APG_BRANA ANTER-SPECIFIC PROLINE-RICH PROTEIN APG (PROTEIN CEX)
            >pir||S16748 proline-rich protein - rape (fragment) >gi|22597
            (X60376) proline-rich protein [Brassica napus]
            Length = 449
	    Score = 110 (38.7 bits), Expect = 0.011, P = 0.011
  =>sp|P11414|RPB1_CRIGR DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT (RPB1)
            >pir||A27677 DNA-directed RNA polymerase (EC 2.7.7.6) II large
            chain - Chinese hamster (fragment) >gi|387055 (M19538) RNA
            polymerase II largest subunit [Cricetulus griseus]
            Length = 467
	    Score = 110 (38.7 bits), Expect = 0.011, P = 0.011
  =>gi|296594 (X68600) pZE40 gene product [Hordeum vulgare]
           Length = 129
	    Score = 85 (29.9 bits), Expect = 0.011, Sum P(2) = 0.011
  =>pir||A25704 synapsin I - rat >gi|57182 (X04655) synapsin I (AA 1-691) [Rattus
            norvegicus]
            Length = 691
	    Score = 112 (39.4 bits), Expect = 0.012, P = 0.012
  =>sp|P21997|SSGP_VOLCA SULFATED SURFACE GLYCOPROTEIN 185 (SSG 185) >pir||A33647
            sulfated surface glycoprotein 185 - Volvox carteri >gnl|PID|e249522
            (X51616) SULFATED SURFACE GLYCOPROTEIN 185 [Volvox carteri]
            Length = 485
	    Score = 110 (38.7 bits), Expect = 0.012, P = 0.012
  =>gi|347457 (L22031) hydroxyproline-rich glycoprotein [Glycine max]
           Length = 118
	    Score = 87 (30.6 bits), Expect = 0.012, P = 0.012
  =>pir||S14975 extensin class II (clone uJ-2) - tomato >gnl|PID|e150338 (X55686)
            extensin (class II) [Solanum lycopersicum]
            Length = 82
	    Score = 87 (30.6 bits), Expect = 0.012, P = 0.012
  =>pir||S14972 extensin class I (clone w6) - tomato >gnl|PID|e150337 (X55683)
            extensin (class I) [Solanum lycopersicum]
            Length = 90
	    Score = 87 (30.6 bits), Expect = 0.012, P = 0.012
  =>gi|397333 (Z25726) Sulfated surface glycoprotein [Arabidopsis thaliana]
           Length = 76
	    Score = 87 (30.6 bits), Expect = 0.012, P = 0.012
  =>pir||A43932 mucin 2 precursor, intestinal - human (fragments)
            Length = 3020
	    Score = 113 (39.8 bits), Expect = 0.012, Sum P(2) = 0.012
  =>sp|P14918|EXTN_MAIZE EXTENSIN PRECURSOR (PROLINE-RICH GLYCOPROTEIN)
            >pir||S08314 cell wall glycoprotein - maize >gi|22508 (X13499) cell
            wall protein (AA 1-267) [Zea mays] >gi|168455 (M36912) cell wall
            protein (put.); putative [Zea mays] >prf||1604465A cell wall
            protein [Zea mays]
            Length = 267
	    Score = 106 (37.3 bits), Expect = 0.012, P = 0.012
  =>gnl|PID|e1313416 (AJ006855) DeltaSAC-synaptojanin1 [Rattus norvegicus]
            Length = 908
	    Score = 113 (39.8 bits), Expect = 0.013, P = 0.013
  =>pir||B41132 collagen-related protein 2 - Hydra magnipapillata (fragment)
            >pir||S21930 mini-collagen - Hydra sp >gi|9449 (X61046)
            mini-collagen [Hydra sp.]
            Length = 142
	    Score = 96 (33.8 bits), Expect = 0.014, P = 0.014
  =>pir||A48232 cysteine-rich extensin-like protein 1 precursor - common tobacco
            >gi|310923 (L13439) cysteine-rich extensin-like protein-1
            [Nicotiana tabacum]
            Length = 209
	    Score = 103 (36.3 bits), Expect = 0.015, P = 0.014
  =>gnl|PID|e316593 (Y13141) extensin [Bromheadia finlaysoniana]
            Length = 71
	    Score = 86 (30.3 bits), Expect = 0.015, P = 0.015
  =>pir||S14971 extensin class I (clone wY) - tomato >gnl|PID|e153040 (X55682)
            extensin (class I) [Solanum lycopersicum]
            Length = 67
	    Score = 86 (30.3 bits), Expect = 0.015, P = 0.015
  =>gi|3025832 (AF055985) pyrrolidone-rich antigen [Onchocerca volvulus]
            Length = 93
	    Score = 86 (30.3 bits), Expect = 0.015, P = 0.015
  =>pir||S28264 hydroxyproline-rich glycoprotein - maize >gi|22333 (X63134)
            hydroxyproline-rich glycoprotein [Zea mays] >prf||1814452A Hyp-rich
            glycoprotein [Zea mays]
            Length = 303
	    Score = 106 (37.3 bits), Expect = 0.016, P = 0.016
  =>pir||PQ0476 pistil extensin-like protein (clone pMG08) - common tobacco
            (fragment)
            Length = 154
	    Score = 98 (34.5 bits), Expect = 0.016, P = 0.016
  =>gnl|PID|d1006204 (D28113) MOBP [Homo sapiens]
            Length = 182
	    Score = 101 (35.6 bits), Expect = 0.016, P = 0.016
  =>gi|2605967 (AF030027) 24 [Equine herpesvirus 4]
            Length = 3534
	    Score = 118 (41.5 bits), Expect = 0.016, P = 0.016
  =>sp|P14328|SP96_DICDI SPORE COAT PROTEIN SP96 >pir||S07638 spore coat protein
            SP96 precursor - slime mold (Dictyostelium discoideum) >gi|295736
            (X16491) spore coat protein sp96 [Dictyostelium discoideum]
            Length = 600
	    Score = 110 (38.7 bits), Expect = 0.016, P = 0.016
  =>gi|19923 (Z14016) pistil extensin like protein, partial CDS [Nicotiana
          tabacum]
          Length = 155
	    Score = 98 (34.5 bits), Expect = 0.017, P = 0.016
  =>gi|18732 (X52492) DNA-directed RNA polymerase [Glycine max]
          Length = 625
	    Score = 110 (38.7 bits), Expect = 0.017, P = 0.017
  =>pir||S14181 DNA-directed RNA polymerase (EC 2.7.7.6) largest chain (isoform
            B1) - soybean (fragment)
            Length = 650
	    Score = 110 (38.7 bits), Expect = 0.018, P = 0.018
  =>pir||PQ0479 pistil extensin-like protein (clone pMG14) - common tobacco
            (fragment) >gi|19927 (Z14015) pistil extensin like protein
            [Nicotiana tabacum]
            Length = 393
	    Score = 107 (37.7 bits), Expect = 0.019, P = 0.019
  =>gi|1166575 (U45479) synaptojanin [Rattus norvegicus]
            Length = 1292
	    Score = 113 (39.8 bits), Expect = 0.019, P = 0.019
  =>gi|2804500 (AF043706) contains similarity to granulins [Caenorhabditis
            elegans]
            Length = 768
	    Score = 95 (33.4 bits), Expect = 0.019, Sum P(2) = 0.019
  =>pir||A42934 heat shock protein hsp83 - Crithidia fasciculata (fragment)
            >bbs|134317 hsp83=83 kda heat shock protein {internal fragment}
            [Crithidia fasciculata, Peptide Partial, 20 aa]
            Length = 20
	    Score = 85 (29.9 bits), Expect = 0.020, P = 0.020
  =>gnl|PID|e282228 (X63508) predicted ORF [Mycobacterium tuberculosis]
            Length = 115
	    Score = 85 (29.9 bits), Expect = 0.020, P = 0.020
  =>pir||PQ0474 pistil extensin-like protein precursor (clone pMG02) - common
            tobacco (fragment)
            Length = 108
	    Score = 85 (29.9 bits), Expect = 0.020, P = 0.020
  =>gi|19917 (Z14014) Pistil extensin like protein, partial CDS only [Nicotiana
          tabacum]
          Length = 109
	    Score = 85 (29.9 bits), Expect = 0.020, P = 0.020
  =>gi|158148 (M19537) RNA polymerase II largest subunit (, EC 2.7.7.6)
           [Drosophila melanogaster]
           Length = 408
	    Score = 107 (37.7 bits), Expect = 0.020, P = 0.020
  =>gi|2565065 (U80745) CTG7a [Homo sapiens]
            Length = 349
	    Score = 106 (37.3 bits), Expect = 0.020, P = 0.020
  =>sp|P31635|RPB0_ARATH DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT (VERSION
            2) >pir||JDMU2 DNA-directed RNA polymerase (EC 2.7.7.6) II largest
            chain (version 2) - Arabidopsis thaliana >gi|16494 (X52494)
            DNA-directed RNA polymerase [Arabidopsis thaliana]
            Length = 1860
	    Score = 114 (40.1 bits), Expect = 0.022, P = 0.022
  =>prf||2204390A synaptojanin [Rattus norvegicus]
            Length = 1558
	    Score = 113 (39.8 bits), Expect = 0.023, P = 0.023
  =>pir||S14970 extensin class I (clone w17-1) - tomato >gnl|PID|e150336 (X55681)
            extensin (class I) [Solanum lycopersicum]
            Length = 132
	    Score = 92 (32.4 bits), Expect = 0.024, P = 0.024

>CcruzaQ_286 has the following protein neighbors:
Sequence,   
  =>sp|P41126|RL13_DROME 60S RIBOSOMAL PROTEIN L13 (BBC1 PROTEIN HOMOLOG)
            >pir||JC4260 breast basic conserved protein 1 - fruit fly
            (Drosophila melanogaster) >gi|467734 (X77926) BBC1 protein
            [Drosophila melanogaster]
            Length = 218
	    Score = 448 (157.7 bits), Expect = 1.3e-41, P = 1.3e-41
  =>pir||S42877 ribosomal protein L13.e - fruit fly (Drosophila melanogaster)
            Length = 217
	    Score = 438 (154.2 bits), Expect = 1.5e-40, P = 1.5e-40
  =>gnl|PID|d1032701 (AB016216) ribosomal protein L13 homolog [Schizosaccharomyces
            pombe]
            Length = 208
	    Score = 416 (146.4 bits), Expect = 3.2e-38, P = 3.2e-38
  =>sp|P41127|RL13_ARATH 60S RIBOSOMAL PROTEIN L13 (BBC1 PROTEIN HOMOLOG)
            >pir||S37271 ribosomal protein L13 - Arabidopsis thaliana
            >gi|404166 (X75162) BBC1 protein [Arabidopsis thaliana]
            Length = 206
	    Score = 405 (142.6 bits), Expect = 4.7e-37, P = 4.7e-37
  =>sp|P41125|RL13_CHICK 60S RIBOSOMAL PROTEIN L13 (BREAST BASIC CONSERVED PROTEIN
            1) >gnl|PID|d1005919 (D26318) similar to bbc1(breast basic
            conserved gene) of human [Gallus gallus]
            Length = 211
	    Score = 403 (141.9 bits), Expect = 7.6e-37, P = 7.6e-37
  =>sp|P41129|R132_BRANA 60S RIBOSOMAL PROTEIN L13-2 (COLD INDUCED PROTEIN C24B)
            >pir||S37134 cold-induced protein BnC24B - rape >gi|398922 (Z22620)
            cold induced protein (BnC24B) [Brassica napus]
            Length = 206
	    Score = 402 (141.5 bits), Expect = 9.7e-37, P = 9.7e-37
  =>gnl|PID|d1024629 (AB009086) BBC1 protein [Chlamydomonas sp.]
            Length = 208
	    Score = 396 (139.4 bits), Expect = 4.2e-36, P = 4.2e-36
  =>gi|1825726 (U88308) Similar to ribosomal protein L13; coded for by C. elegans
            cDNA CEMSB81FB; coded for by C. elegans cDNA yk108e1.3; coded for
            by C. elegans cDNA yk63c4.3; coded for by C. elegans cDNA
            yk63e12.3; coded for by C. elegans cDNA yk106a5.3;...
            Length = 207
	    Score = 395 (139.0 bits), Expect = 5.4e-36, P = 5.4e-36
  =>sp|P41128|R131_BRANA 60S RIBOSOMAL PROTEIN L13-1 (COLD INDUCED PROTEIN C24A)
            >pir||S37132 ribosomal protein L13.A - rape >gi|398918 (Z22618)
            cold induced protein (BnC24A) [Brassica napus]
            Length = 206
	    Score = 394 (138.7 bits), Expect = 6.8e-36, P = 6.8e-36
  =>sp|P41123|RL13_RAT 60S RIBOSOMAL PROTEIN L13
            Length = 211
	    Score = 390 (137.3 bits), Expect = 1.8e-35, P = 1.8e-35
  =>sp|P26373|RL13_HUMAN 60S RIBOSOMAL PROTEIN L13 (BREAST BASIC CONSERVED PROTEIN
            1) >pir||S23753 ribosomal protein L13, cytosolic - human >gi|29383
            (X64707) BBC1 gene product [Homo sapiens]
            Length = 211
	    Score = 389 (136.9 bits), Expect = 2.3e-35, P = 2.3e-35
  =>pir||JC2368 ribosomal protein L13 - rat >gi|510552 (X78327) ribosomal protein
            L13 [Rattus norvegicus]
            Length = 211
	    Score = 384 (135.2 bits), Expect = 7.8e-35, P = 7.8e-35
  =>sp|Q95043|RL13_SCHMA 60S RIBOSOMAL PROTEIN L13 (BBC1 PROTEIN HOMOLOG)
            >gi|1575059 (U57003) breast basic conserved protein [Schistosoma
            mansoni]
            Length = 184
	    Score = 374 (131.7 bits), Expect = 9.0e-34, P = 9.0e-34
  =>gnl|PID|e1226101 (AJ223198) 60S ribosomal protein L13 [Lumbricus rubellus]
            Length = 188
	    Score = 365 (128.5 bits), Expect = 8.1e-33, P = 8.1e-33
  =>sp|P47963|RL13_MOUSE 60S RIBOSOMAL PROTEIN L13 (A52) >gi|899445 (U28917) 60S
            ribosomal protein [Mus musculus]
            Length = 213
	    Score = 360 (126.7 bits), Expect = 2.7e-32, P = 2.7e-32
  =>gi|2981202 (AF050672) ribosomal protein L13E [Candida albicans]
            Length = 202
	    Score = 337 (118.6 bits), Expect = 7.5e-30, P = 7.5e-30
  =>sp|Q12690|R13D_YEAST PROBABLE 60S RIBOSOMAL PROTEIN L13E B >pir||S67618
            ribosomal protein L13.e.A, cytosolic - yeast (Saccharomyces
            cerevisiae) >gnl|PID|e253216 (Z74130) ORF YDL082w [Saccharomyces
            cerevisiae]
            Length = 199
	    Score = 335 (117.9 bits), Expect = 1.2e-29, P = 1.2e-29
  =>sp|P40212|R13C_YEAST PROBABLE 60S RIBOSOMAL PROTEIN L13E A >pir||S50398
            ribosomal protein L13.e.B, cytosolic - yeast (Saccharomyces
            cerevisiae) >gi|606440 (Z47071) similar to breast basic conserved
            protein 1 [Saccharomyces cerevisiae]
            Length = 199
	    Score = 334 (117.6 bits), Expect = 1.6e-29, P = 1.6e-29
  =>sp|P49627|RL13_TOBAC 60S RIBOSOMAL PROTEIN L13 (CLONE 6.2.1) >pir||S50116
            hypothetical protein - common tobacco >gi|467325 (L31416)
            [Nicotiana tabacum (clone 6.2.1) mRNA, complete cds.], gene product
            [Nicotiana tabacum]
            Length = 202
	    Score = 305 (107.4 bits), Expect = 1.8e-26, P = 1.8e-26
  =>gnl|PID|d1022871 (AB002774) ribosomal protein L13 [Entamoeba histolytica]
            Length = 138
	    Score = 256 (90.1 bits), Expect = 2.9e-21, P = 2.9e-21
  =>gi|1732413 (U47924) RPL13-2 [Homo sapiens]
            Length = 144
	    Score = 210 (73.9 bits), Expect = 2.2e-16, P = 2.2e-16
  =>pir||A37199 sperm mitochondrial capsule selenoprotein - mouse
            Length = 143
	    Score = 116 (40.8 bits), Expect = 7.5e-06, P = 7.5e-06
  =>bbs|118582 (S49657) mitochondrial capsule selenoprotein; MCS [Mus sp.]
            Length = 194
	    Score = 116 (40.8 bits), Expect = 0.00027, P = 0.00027
  =>gi|459886 (M88463) seleno-protein [Mus musculus] >gi|567228 (M29603) capsule
           seleno-protein [Mus musculus]
           Length = 197
	    Score = 116 (40.8 bits), Expect = 0.00029, P = 0.00029
  =>sp|P15265|MCS_MOUSE SPERM MITOCHONDRIAL CAPSULE SELENOPROTEIN (MCS)
            Length = 197
	    Score = 116 (40.8 bits), Expect = 0.00029, P = 0.00029
  =>sp|P26372|KRUC_SHEEP KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN (UHS KERATIN)
            >pir||A36686 ultra-high-sulfur keratin - sheep >gi|1306 (X55294)
            ultra high-sulphur keratin protein [Ovis aries] >prf||1704255B Cys
            rich protein [Ovis aries]
            Length = 182
	    Score = 114 (40.1 bits), Expect = 0.00034, P = 0.00034
  =>pir||SKXLAG dermal gland protein APEG precursor - African clawed frog
            (fragment) >gnl|PID|e71045 (X51394) APEG precursor protein [Xenopus
            laevis]
            Length = 416
	    Score = 118 (41.5 bits), Expect = 0.0012, P = 0.0012
  =>sp|P17437|XP2_XENLA SKIN SECRETORY PROTEIN XP2 PRECURSOR (APEG PROTEIN)
            Length = 439
	    Score = 118 (41.5 bits), Expect = 0.0013, P = 0.0013
  =>pir||S37133 cold-induced protein BnC24B - rape (fragment) >gi|398920 (Z22619)
            cold induced protein (BnC24B) [Brassica napus]
            Length = 90
	    Score = 95 (33.4 bits), Expect = 0.0015, P = 0.0015
  =>gi|2275278 (U97372) unknown [Schizosaccharomyces pombe]
            Length = 70
	    Score = 95 (33.4 bits), Expect = 0.0015, P = 0.0015
  =>sp|P26371|KRUC_HUMAN KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN (UHS KERATIN)
            >pir||B36686 ultra-high-sulfur keratin - human >gi|34079 (X55293)
            ultra high-sulphur keratin protein [Homo sapiens] >gnl|PID|e1299394
            (AJ006693) ultra high sulfer keratin [Homo sapiens] >prf||1704255A
            Cys rich protein [Homo sapiens]
            Length = 169
	    Score = 102 (35.9 bits), Expect = 0.0079, P = 0.0078
  =>pir||S18946 high-sulfur keratin - human >gi|32472 (X63755) high-sulpher
            keratin [Homo sapiens]
            Length = 169
	    Score = 102 (35.9 bits), Expect = 0.0079, P = 0.0078
  =>gi|3044086 (AF055904) unknown [Myxococcus xanthus]
            Length = 542
	    Score = 112 (39.4 bits), Expect = 0.0081, P = 0.0081
  =>gi|3165522 (AF067607) Similar to cuticular collagen; C18H7.3 [Caenorhabditis
            elegans]
            Length = 460
	    Score = 111 (39.1 bits), Expect = 0.0083, P = 0.0082
  =>gi|1326321 (U58742) Similar to cys- and gln-rich protein [Caenorhabditis
            elegans]
            Length = 242
	    Score = 106 (37.3 bits), Expect = 0.0094, P = 0.0093
  =>gnl|PID|e1289135 (AJ005566) SPR2H protein [Mus musculus]
            Length = 108
	    Score = 87 (30.6 bits), Expect = 0.012, P = 0.012
  =>pir||A38346 ultra-high-sulfur keratin 1 - mouse >gi|200962 (M37759) serine 1
            ultra high sulfur protein [Mus musculus]
            Length = 230
	    Score = 104 (36.6 bits), Expect = 0.014, P = 0.014
  =>pir||D61615 sericin MG-1 - greater wax moth (fragment)
            Length = 115
	    Score = 85 (29.9 bits), Expect = 0.019, P = 0.019
  =>gnl|PID|d1019926 (AB000787) metallothionein isoform [Sus scrofa]
            Length = 61
	    Score = 83 (29.2 bits), Expect = 0.032, P = 0.031
  =>gnl|PID|e293766 (X98707) COL1A1 and PDGFB fusion transcript [Homo sapiens]
            Length = 104
	    Score = 83 (29.2 bits), Expect = 0.032, P = 0.032
  =>sp|P16252|CAC2_HAECO CUTICLE COLLAGEN 2C >gi|159167 (J04670) collagen 2c
            [Haemonchus contortus]
            Length = 210
	    Score = 100 (35.2 bits), Expect = 0.033, P = 0.032
  =>pir||B44984 collagen - nematode (Haemonchus contortus) (fragment)
            Length = 210
	    Score = 100 (35.2 bits), Expect = 0.033, P = 0.032
  =>sp|P37360|MT3_HORSE METALLOTHIONEIN-III (MT-III) (GROWTH INHIBITORY FACTOR)
            (GIF) >pir||S44392 growth inhibitory factor - horse >bbs|147639
            e-GIF=neuronal growth inhibitory factor [horses, brain, Peptide, 68
            aa] >prf||2013226B neuronal growth inhibitory factor [Equus
            caballus]
            Length = 68
	    Score = 82 (28.9 bits), Expect = 0.041, P = 0.040
  =>sp|P55944|MT3_PIG METALLOTHIONEIN-III (MT-III) (GROWTH INHIBITORY FACTOR)
            (GIF) >gi|2073002 (U95969) metallothionein-III [Sus scrofa]
            Length = 68
	    Score = 82 (28.9 bits), Expect = 0.041, P = 0.040
  =>gnl|PID|e236502 (Z71177) Similarity with 39.2kd yeast protein (Swiss Prot
            accession number P42836) [Caenorhabditis elegans]
            Length = 600
	    Score = 106 (37.3 bits), Expect = 0.044, P = 0.043
  =>gnl|PID|e236456 (Z71177) unnamed protein product [Caenorhabditis elegans]
            Length = 425
	    Score = 104 (36.6 bits), Expect = 0.045, P = 0.044
  =>gnl|PID|e184453 (X87883) mitochondrial capsule selenoprotein [Rattus
            norvegicus] >gi|1354135 (U48702) mitochondia associated
            cysteine-rich protein SMCP [Rattus norvegicus]
            Length = 145
	    Score = 93 (32.7 bits), Expect = 0.046, P = 0.045
  =>sp|Q93083|MT1R_HUMAN METALLOTHIONEIN-IR (MT-1R) >gnl|PID|e239986 (X97261)
            Metallothionein 1R [Homo sapiens]
            Length = 61
	    Score = 80 (28.2 bits), Expect = 0.068, P = 0.066
  =>sp|P49068|MT1_PIG METALLOTHIONEIN-I (MT-I) >pir||I46602 metallothionein - pig
            >gi|164545 (M29515) metallothionein [Sus scrofa] >gnl|PID|d1019925
            (AB000786) metallothionein isoform [Sus scrofa]
            Length = 61
	    Score = 80 (28.2 bits), Expect = 0.068, P = 0.066
  =>gnl|PID|e1289137 (AJ005567) SPR2I protein [Mus musculus]
            Length = 76
	    Score = 80 (28.2 bits), Expect = 0.068, P = 0.066
  =>gi|3108187 (AC004663) Notch 3 [Homo sapiens]
            Length = 2281
	    Score = 110 (38.7 bits), Expect = 0.073, P = 0.071
  =>gi|2668592 (U97669) Notch3 [Homo sapiens]
            Length = 2321
	    Score = 110 (38.7 bits), Expect = 0.075, P = 0.072
  =>gi|3065951 (AF058900) Notch3 [Homo sapiens]
            Length = 2321
	    Score = 110 (38.7 bits), Expect = 0.075, P = 0.072
  =>pir||I46412 keratin KAP5.4 - sheep >gi|313720 (X73434) KAP5.4 keratin protein
            [Ovis aries]
            Length = 191
	    Score = 95 (33.4 bits), Expect = 0.096, P = 0.091

>CcruzaQ_589 has the following protein neighbors:
Sequence,   
  =>gnl|PID|e1273342 (AL022140) symbiosis-related like protein [Arabidopsis
            thaliana]
            Length = 107
	    Score = 235 (82.7 bits), Expect = 5.2e-30, Sum P(2) = 5.2e-30
  =>gi|3367536 (AC004392) Contains similarity to symbiosis-related like protein
            F1N20.80 gi|2961343 from A. thaliana BAC gb|AL022140.  EST
            gb|T04695 comes from this gene. [Arabidopsis thaliana]
            Length = 149
	    Score = 226 (79.6 bits), Expect = 7.3e-29, Sum P(2) = 7.3e-29
  =>sp|O08765|GEF2_RAT GANGLIOSIDE EXPRESSION FACTOR 2 (GEF-2) >gnl|PID|d1020769
            (AB003515) GEF-2 [Rattus norvegicus]
            Length = 117
	    Score = 201 (70.8 bits), Expect = 2.4e-28, Sum P(2) = 2.4e-28
  =>gi|2583137 (AC002387) similar to symbiosis-related protein, 5' partial
            [Arabidopsis thaliana]
            Length = 92
	    Score = 226 (79.6 bits), Expect = 8.5e-23, Sum P(2) = 8.5e-23
  =>gi|2072023 (U93506) symbiosis-related protein [Laccaria bicolor]
            Length = 195
	    Score = 236 (83.1 bits), Expect = 3.8e-19, P = 3.8e-19
  =>sp|P87068|SYRP_LACBI SYMBIOSIS-RELATED PROTEIN
            Length = 184
	    Score = 236 (83.1 bits), Expect = 3.8e-19, P = 3.8e-19
  =>sp|P38182|YBH8_YEAST HYPOTHETICAL 13.6 KD PROTEIN IN NUP170-ILS1 INTERGENIC
            REGION >pir||S45432 hypothetical protein YBL078c - yeast
            (Saccharomyces cerevisiae) >gi|496705 (X79489) E-117 protein
            [Saccharomyces cerevisiae] >gi|536125 (Z35839) ORF YBL078c
            [Saccharomyces cerevisiae]
            Length = 117
	    Score = 230 (81.0 bits), Expect = 1.6e-18, P = 1.6e-18
  =>sp|Q62625|MPL3_RAT MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3
            (MAP1A/MAP1B LC3) >pir||A53624 microtubule-associated protein 1
            light chain 3 - rat >gi|455109 (U05784) light chain 3 subunit of
            microtubule-associated proteins 1A and 1B [Rattus norvegicus]
            Length = 142
	    Score = 143 (50.3 bits), Expect = 3.7e-18, Sum P(2) = 3.7e-18
  =>sp|Q09490|YQD9_CAEEL HYPOTHETICAL 14.8 KD PROTEIN C32D5.9 IN CHROMOSOME II
            >gi|746472 (U23511) weakly similar to ATP7 region hypothetical
            protein in yeast (SP:YKAD_YEAST) [Caenorhabditis elegans]
            Length = 123
	    Score = 188 (66.2 bits), Expect = 4.6e-14, P = 4.6e-14
  =>gi|2465192 (U80885) polyprotein [pestivirus type 1]
            Length = 932
	    Score = 138 (48.6 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
  =>sp|Q23536|YHM6_CAEEL HYPOTHETICAL 15.1 KD PROTEIN ZK593.6 IN CHROMOSOME IV
            >gnl|PID|e222026 (Z69385) ZK593.6 [Caenorhabditis elegans]
            Length = 130
	    Score = 134 (47.2 bits), Expect = 7.7e-08, P = 7.7e-08
  =>gnl|PID|e327507 (Z97341) hypothetical protein [Arabidopsis thaliana]
            Length = 165
	    Score = 131 (46.1 bits), Expect = 1.7e-07, P = 1.7e-07

>CcruzaQ_829 has the following protein neighbors:
Sequence,   
  =>gi|862343 (L10908) Gcap1 gene product [Mus musculus] >prf||2022314A granule
           cell marker protein [Mus musculus] >prf||2022315A granule cell
           marker protein [Mus musculus]
           Length = 85
	    Score = 60 (21.1 bits), Expect = 0.020, Sum P(2) = 0.020

>CcruzaQ_1734 has the following protein neighbors:
Sequence,   
  =>sp|P15340|HSP_CHICK SPERM HISTONE (PROTAMINE) (GALLINE) >pir||A34326 protamine
            - chicken >gi|609436 (L38713) protamine [Gallus gallus] >gi|609437
            (M28100) protamine [Gallus gallus]
            Length = 62
	    Score = 91 (32.0 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
  =>pir||S56117 spermatid-specific protein T2 precursor - longfin squid
            Length = 118
	    Score = 91 (32.0 bits), Expect = 0.0041, P = 0.0041
  =>bbs|169646 protamine [Monodonta turbinata, gonads, Peptide, 106 aa]
            Length = 106
	    Score = 91 (32.0 bits), Expect = 0.0041, P = 0.0041
  =>bbs|169196 T2=testis-specific pro-protamine [Loligo pealeii=squids, testis
            chromatin, Peptide, 79 aa]
            Length = 79
	    Score = 90 (31.7 bits), Expect = 0.0053, P = 0.0053
  =>sp|Q02326|R16A_YEAST 60S RIBOSOMAL PROTEIN YL16A >pir||S28944 ribosomal
            protein L6.e.A, cytosolic - yeast (Saccharomyces cerevisiae)
            >gnl|PID|d1001546 (D10225) ribosomal protein YL16 [Saccharomyces
            cerevisiae] >gi|914877 (Z46373) YL16a gene, len: 176, CAI: 0.64,
            R16A_YEAST Q02326 60S ribosomal protein YL16A [Saccharomyces
            cerevisiae]
            Length = 176
	    Score = 101 (35.6 bits), Expect = 0.013, P = 0.013
  =>pir||S56116 spermatid-specific protein T1 - longfin squid >bbs|169195
            T1=testis-specific pro-protamine [Loligo pealeii=squids, testis
            chromatin, Peptide, 79 aa]
            Length = 79
	    Score = 85 (29.9 bits), Expect = 0.019, P = 0.018
  =>sp|Q04621|PHI1_MYTED SPERM-SPECIFIC PROTEIN PHI-1 >pir||S34115 sperm-specific
            protein Phi-1 - blue mussel (fragment) >gi|9700 (X69718)
            sperm-specific protien Phi-1 [Mytilus edulis]
            Length = 92
	    Score = 82 (28.9 bits), Expect = 0.040, P = 0.039
  =>gi|2330935 (AF001595) protamine P1 [Planigale sp. 1]
            Length = 62
	    Score = 81 (28.5 bits), Expect = 0.051, P = 0.050
  =>gi|2738408 (AF003534) putative small basic protein [Chilo iridescent virus]
            Length = 57
	    Score = 80 (28.2 bits), Expect = 0.066, P = 0.064
  =>sp|P80001|PRT1_SEPOF SPERMATID-SPECIFIC PROTEIN T1 (CONTAINS: SPERM PROTAMINE
            SP1) >pir||A40973 spermatid-specific protein T1 - common cuttlefish
            >bbs|56648 spermatid-specific protein=variant T1 [cuttlefish,
            Peptide, 78 aa]
            Length = 78
	    Score = 79 (27.8 bits), Expect = 0.084, P = 0.081
  =>pir||S14085 protamine - common cuttlefish
            Length = 57
	    Score = 79 (27.8 bits), Expect = 0.084, P = 0.081
  =>sp|O18747|HSP1_PLAGI SPERM PROTAMINE P1 >gi|2330931 (AF001593) protamine P1
            [Planigale gilesi]
            Length = 62
	    Score = 79 (27.8 bits), Expect = 0.084, P = 0.081
  =>pir||S65494 PL III sperm-specific protein - Mytilus trossulus >bbs|166735
            protamine-like protein PL-III=major nuclear basic protein [Mytilus
            trossulus=mussels, Gould, 1850, sperm, Peptide, 101 aa]
            >prf||2111278A major protamine-like protein [Mytilus trossulus]
            Length = 101
	    Score = 79 (27.8 bits), Expect = 0.084, P = 0.081
  =>bbs|117289 (S47241) putative DNA binding protein=son [human, placenta, Peptide
            Partial, 89 aa, segment 4 of 4] [Homo sapiens]
            Length = 89
	    Score = 78 (27.5 bits), Expect = 0.11, P = 0.10

>CcruzaQ_1068 has the following protein neighbors:
Sequence,   
  =>sp|P40429|R13A_HUMAN 60S RIBOSOMAL PROTEIN L13A (23 KD HIGHLY BASIC PROTEIN)
            >pir||S29539 basic protein, 23K - human >gi|23691 (X56932) 23 kD
            highly basic protein [Homo sapiens]
            Length = 203
	    Score = 443 (155.9 bits), Expect = 4.4e-41, P = 4.4e-41
  =>pir||A44367 tumor-specific transplantation antigen P198 homolog p23 - bovine
            (fragment)
            Length = 202
	    Score = 443 (155.9 bits), Expect = 4.4e-41, P = 4.4e-41
  =>sp|P35427|R13A_RAT 60S RIBOSOMAL PROTEIN L13A >pir||A53204 ribosomal protein
            L13a - rat >gi|460776 (X68282) rat ribosomal protein L13a [Rattus
            norvegicus]
            Length = 203
	    Score = 437 (153.8 bits), Expect = 1.9e-40, P = 1.9e-40
  =>pir||JL0149 transplantation antigen P198 - mouse >gi|55050 (X51528) tum-
            transplantation antigen P198 [Mus musculus]
            Length = 203
	    Score = 436 (153.5 bits), Expect = 2.4e-40, P = 2.4e-40
  =>sp|P19253|R13A_MOUSE 60S RIBOSOMAL PROTEIN L13A (TRANSPLANTATION ANTIGEN P198)
            (TUM-P198 ANTIGEN)
            Length = 203
	    Score = 436 (153.5 bits), Expect = 2.4e-40, P = 2.4e-40
  =>gnl|PID|e1250584 (AL021813) 60s ribosomal protein [Schizosaccharomyces pombe]
            Length = 197
	    Score = 399 (140.5 bits), Expect = 2.0e-36, P = 2.0e-36
  =>gi|604496 (U18488) transplantation antigen [Salmo trutta]
           Length = 189
	    Score = 395 (139.0 bits), Expect = 5.3e-36, P = 5.3e-36
  =>gnl|PID|e1250660 (AL021816) ribosomal protein L13 [Schizosaccharomyces pombe]
            Length = 197
	    Score = 393 (138.3 bits), Expect = 8.7e-36, P = 8.7e-36
  =>gnl|PID|d1032515 (AB016008) ribosomal protein rp22 homolog
            [Schizosaccharomyces pombe]
            Length = 193
	    Score = 393 (138.3 bits), Expect = 8.7e-36, P = 8.7e-36
  =>sp|Q27389|R13A_CAEEL PROBABLE 60S RIBOSOMAL PROTEIN L13A >gi|561923 (Z46381)
            M01F1.2 [Caenorhabditis elegans] >gi|963095 (U31528) 60S ribosomal
            protein L13A [Caenorhabditis elegans]
            Length = 202
	    Score = 385 (135.5 bits), Expect = 6.1e-35, P = 6.1e-35
  =>sp|P26784|R13A_YEAST 60S RIBOSOMAL PROTEIN L13A (RP22) >pir||S48401 ribosomal
            protein L16.e.A, cytosolic - yeast (Saccharomyces cerevisiae)
            >gi|557790 (Z38059) orf, len: 199, CAI: 0.62, predicted to be
            spliced, similar to A44367 A44367 P23=TUMOR-SPECIFIC
            TRANSPLANTATION ANTIGEN and ribosomal proteins [Saccharomyces
            cerevisiae] >gi|763213 (Z47047) unknown [Saccharomyces cerevisiae]
            Length = 199
	    Score = 377 (132.7 bits), Expect = 4.3e-34, P = 4.3e-34
  =>sp|P93099|R13A_CYAPA 60S RIBOSOMAL PROTEIN L13A >gnl|PID|e286213 (Y09971)
            ribosomal protein L13a [Cyanophora paradoxa]
            Length = 200
	    Score = 376 (132.4 bits), Expect = 5.5e-34, P = 5.5e-34
  =>sp|P26785|RP23_YEAST 60S RIBOSOMAL PROTEIN RP23 >pir||S53911 ribosomal protein
            L16.e.B, cytosolic - yeast (Saccharomyces cerevisiae) >gi|791117
            (X86470) unknown [Saccharomyces cerevisiae] >gnl|PID|e239685
            (Z71345) ORF YNL069c [Saccharomyces cerevisiae]
            Length = 198
	    Score = 374 (131.7 bits), Expect = 9.0e-34, P = 9.0e-34
  =>gnl|PID|e1263896 (AL022103) 60s ribosomal protein [Schizosaccharomyces pombe]
            Length = 197
	    Score = 373 (131.3 bits), Expect = 1.1e-33, P = 1.1e-33
  =>gnl|PID|e1237871 (AJ223363) ribosomal protein L13a [Lupinus luteus]
            Length = 205
	    Score = 367 (129.2 bits), Expect = 5.0e-33, P = 5.0e-33
  =>gi|2982259 (AF051212) probable 60s ribosomal protein L13a [Picea mariana]
            Length = 206
	    Score = 366 (128.8 bits), Expect = 6.3e-33, P = 6.3e-33
  =>sp|Q95307|R13A_PIG 60S RIBOSOMAL PROTEIN L13A
            Length = 137
	    Score = 332 (116.9 bits), Expect = 2.5e-29, P = 2.5e-29
  =>gnl|PID|e291981 (Z84103) 60S ribosomal protein L13A [Sus scrofa]
            Length = 102
	    Score = 307 (108.1 bits), Expect = 1.1e-26, P = 1.1e-26
  =>gnl|PID|e276387 (Z81152) basic protein 23K [Sus scrofa]
            Length = 137
	    Score = 304 (107.0 bits), Expect = 2.4e-26, P = 2.4e-26
  =>gi|2995707 (AF052595) 60S ribosomal protein L13a [Ostertagia ostertagi]
            Length = 150
	    Score = 287 (101.0 bits), Expect = 1.5e-24, P = 1.5e-24
  =>gi|403218 (Z26407) Transplantation Antigene [Arabidopsis thaliana]
           Length = 104
	    Score = 263 (92.6 bits), Expect = 5.2e-22, P = 5.2e-22
  =>gi|2621075 (AE000796) ribosomal protein S16 (E.coli S9) [Methanobacterium
            thermoautotrophicum]
            Length = 282
	    Score = 207 (72.9 bits), Expect = 4.5e-16, P = 4.5e-16
  =>gnl|PID|d1028740 (AB009521) 142aa long hypothetical 50S ribosomal protein L13
            [Pyrococcus horikoshii] >gnl|PID|d1031689 (AP000006) 142aa long
            hypothetical 50S ribosomal protein L13 [Pyrococcus horikoshii]
            Length = 142
	    Score = 204 (71.8 bits), Expect = 9.3e-16, P = 9.3e-16
  =>gi|2612931 (AF020446) ribosomal protein L13A [Entamoeba dispar]
            Length = 87
	    Score = 189 (66.5 bits), Expect = 3.6e-14, P = 3.6e-14
  =>pir||C64324 ribosomal protein L13 - Methanococcus jannaschii
            Length = 140
	    Score = 176 (62.0 bits), Expect = 1.2e-12, P = 1.2e-12
  =>sp|P54023|RL13_METJA 50S RIBOSOMAL PROTEIN L13P >gi|2826260 (U67475) LSU
            ribosomal protein L13P (rplM) [Methanococcus jannaschii]
            Length = 137
	    Score = 176 (62.0 bits), Expect = 1.2e-12, P = 1.2e-12
  =>gi|2649459 (AE001026) LSU ribosomal protein L13P (rpl13P) [Archaeoglobus
            fulgidus]
            Length = 156
	    Score = 175 (61.6 bits), Expect = 1.6e-12, P = 1.6e-12
  =>gi|791118 (X86470) unknown [Saccharomyces cerevisiae]
           Length = 113
	    Score = 161 (56.7 bits), Expect = 6.8e-11, P = 6.8e-11
  =>sp|P39473|RL13_SULAC 50S RIBOSOMAL PROTEIN L13 >pir||S47025 ribosomal protein
            L13 - Sulfolobus acidocaldarius >gi|517292 (X80194) ribosomal
            protein L13 [Sulfolobus acidocaldarius]
            Length = 145
	    Score = 157 (55.3 bits), Expect = 2.0e-10, P = 2.0e-10
  =>sp|P95991|RL13_SULSO 50S RIBOSOMAL PROTEIN L13 >gnl|PID|e283854 (Y08257)
            ribosomal protein L13 [Sulfolobus solfataricus]
            Length = 149
	    Score = 157 (55.3 bits), Expect = 2.0e-10, P = 2.0e-10
  =>sp|P29198|RL13_HALMA 50S RIBOSOMAL PROTEIN L13 (HMAL13) >pir||B41715 ribosomal
            protein L13 - Haloarcula marismortui >gi|148777 (M76567) ribosomal
            protein [Haloarcula marismortui]
            Length = 145
	    Score = 153 (53.9 bits), Expect = 5.6e-10, P = 5.6e-10
  =>gi|2444283 (AF019739) 60S ribosomal protein L13A [Entamoeba dispar]
            Length = 54
	    Score = 128 (45.1 bits), Expect = 3.6e-07, P = 3.6e-07
  =>sp|P17143|J1L_HCMVA HYPOTHETICAL PROTEIN J1L >pir||S09749 hypothetical protein
            J1L - human cytomegalovirus (strain AD169)
            Length = 309
	    Score = 110 (38.7 bits), Expect = 0.0054, P = 0.0054
  =>pir||S09913 hypothetical protein J1 - human cytomegalovirus (strain AD169)
            >gnl|PID|e27353 (X17403) Overlaps J1L, J1S [Human cytomegalovirus]
            Length = 341
	    Score = 110 (38.7 bits), Expect = 0.0065, P = 0.0065
  =>prf||0903209A peptide PD,basic Pro rich [Homo sapiens]
            Length = 70
	    Score = 52 (18.3 bits), Expect = 0.054, Sum P(2) = 0.053
  =>sp|P28968|VGLX_HSVEB GLYCOPROTEIN X PRECURSOR >pir||VGBEX1 glycoprotein X
            precursor - equine herpesvirus 1 (strain Ab4p) >gi|330862 (M86664)
            membrane glycoprotein [Equine herpesvirus 1]
            Length = 797
	    Score = 106 (37.3 bits), Expect = 0.062, P = 0.060
  =>gnl|PID|d1020845 (D88733) membrane glycoprotein [Equine herpesvirus 1]
            Length = 866
	    Score = 106 (37.3 bits), Expect = 0.068, P = 0.066
  =>gnl|PID|d1020846 (D88734) membrane glycoprotein [Equine herpesvirus 1]
            Length = 867
	    Score = 106 (37.3 bits), Expect = 0.068, P = 0.066

>CcruzaQ_783 has the following protein neighbors:
Sequence,   
  =>gi|200770 (M85235) ribosomal protein [Mus musculus]
           Length = 270
	    Score = 526 (185.2 bits), Expect = 3.2e-55, Sum P(2) = 3.2e-55
  =>sp|P14148|RL7_MOUSE 60S RIBOSOMAL PROTEIN L7
            Length = 270
	    Score = 526 (185.2 bits), Expect = 3.2e-55, Sum P(2) = 3.2e-55
  =>pir||JC4230 ribosomal protein L7 - rat
            Length = 260
	    Score = 526 (185.2 bits), Expect = 3.2e-55, Sum P(2) = 3.2e-55
  =>gi|307388 (L16558) ribosomal protein L7 [Homo sapiens]
           Length = 248
	    Score = 527 (185.5 bits), Expect = 4.1e-55, Sum P(2) = 4.1e-55
  =>sp|P18124|RL7_HUMAN 60S RIBOSOMAL PROTEIN L7 >pir||R5HU7 ribosomal protein L7
            - human >gi|36140 (X52967) ribosomal protein L7 [Homo sapiens]
            Length = 248
	    Score = 526 (185.2 bits), Expect = 5.2e-55, Sum P(2) = 5.2e-55
  =>pir||A37055 ribosomal protein L7 - mouse >gi|200785 (M29015) ribosomal protein
            L7 [Mus musculus]
            Length = 270
	    Score = 522 (183.8 bits), Expect = 8.4e-55, Sum P(2) = 8.4e-55
  =>gi|3212879 (AC004005) putative ribosomal protein L7 [Arabidopsis thaliana]
            Length = 247
	    Score = 492 (173.2 bits), Expect = 8.4e-55, Sum P(2) = 8.4e-55
  =>gi|35903 (X57959) ribosomal protein L7 [Homo sapiens]
          Length = 248
	    Score = 519 (182.7 bits), Expect = 2.8e-54, Sum P(2) = 2.8e-54
  =>sp|P11874|RL7_DICDI 60S RIBOSOMAL PROTEIN L7 >pir||R5DO7 ribosomal protein L7
            - slime mold (Dictyostelium discoideum) >gi|7357 (X14909) ribosomal
            protein L7 (AA 1 - 246) [Dictyostelium discoideum]
            Length = 246
	    Score = 506 (178.1 bits), Expect = 2.8e-54, Sum P(2) = 2.8e-54
  =>pir||S30212 ribosomal protein L7 - human >gnl|PID|e31319 (X57958) ribosomal
            protein L7 [Homo sapiens]
            Length = 253
	    Score = 518 (182.3 bits), Expect = 3.6e-54, Sum P(2) = 3.6e-54
  =>prf||1909359B ribosomal protein L7 [Solanum tuberosum]
            Length = 242
	    Score = 480 (169.0 bits), Expect = 2.5e-53, Sum P(2) = 2.5e-53
  =>sp|P05426|RL7_RAT 60S RIBOSOMAL PROTEIN L7 >pir||R5RTL7 ribosomal protein L7 -
            rat
            Length = 258
	    Score = 506 (178.1 bits), Expect = 4.1e-53, Sum P(2) = 4.1e-53
  =>sp|P32100|RL7_DROME 60S RIBOSOMAL PROTEIN L7 >pir||S21500 ribosomal protein
            L7.e - fruit fly (Drosophila melanogaster) >gi|8484 (X15109)
            ribosomal protein [Drosophila melanogaster]
            Length = 239
	    Score = 484 (170.4 bits), Expect = 4.1e-53, Sum P(2) = 4.1e-53
  =>gi|206736 (M17422) ribosomal protein L7 [Rattus norvegicus]
           Length = 252
	    Score = 504 (177.4 bits), Expect = 6.6e-53, Sum P(2) = 6.6e-53
  =>gi|2088722 (AF003139) strong similarity to the L30P family of ribosomal
            proteins [Caenorhabditis elegans]
            Length = 244
	    Score = 484 (170.4 bits), Expect = 2.2e-52, Sum P(2) = 2.2e-52
  =>sp|P25457|RL72_SCHPO 60S RIBOSOMAL PROTEIN L7B >pir||S25067 ribosomal protein
            L7.e.b - fission yeast (Schizosaccharomyces pombe) >gi|5070
            (X54983) ribosomal protein L7 [Schizosaccharomyces pombe]
            >gnl|PID|e349691 (Z99296) 60s ribosomal protein L7 subunit
            [Schizosaccharomyces pombe]
            Length = 250
	    Score = 459 (161.6 bits), Expect = 3.2e-51, Sum P(2) = 3.2e-51
  =>sp|P05737|RL71_YEAST 60S RIBOSOMAL PROTEIN YL8 (L6) (RP11) >pir||R5BYL7
            ribosomal protein L7.e.A, cytosolic - yeast (Saccharomyces
            cerevisiae) >gi|4822 (X62627) ribosomal protein YL8 [Saccharomyces
            cerevisiae] >gnl|PID|e243293 (Z72598) ORF YGL076c [Saccharomyces
            cerevisiae]
            Length = 244
	    Score = 443 (155.9 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
  =>gnl|PID|e1285382 (AL022304) 60s ribosomal protein [Schizosaccharomyces pombe]
            Length = 251
	    Score = 449 (158.1 bits), Expect = 2.5e-49, Sum P(2) = 2.5e-49
  =>pir||S55910 ribosomal protein L7.e.B, cytosolic - yeast (Saccharomyces
            cerevisiae) >gnl|PID|e246921 (Z73554) ORF YPL198w [Saccharomyces
            cerevisiae] >gnl|PID|d1005495 (D25232) ribosomal protein YL8
            [Saccharomyces cerevisiae]
            Length = 244
	    Score = 443 (155.9 bits), Expect = 5.1e-49, Sum P(2) = 5.1e-49
  =>gi|554269 (M29016) ribosomal protein L7 [Mus musculus]
           Length = 244
	    Score = 443 (155.9 bits), Expect = 1.7e-46, Sum P(2) = 1.7e-46
  =>gi|53912 (X57960) ribosomal protein L7 [Mus musculus] >gi|55489 (X57961)
          ribosomal protein L7 [Mus musculus]
          Length = 154
	    Score = 476 (167.6 bits), Expect = 1.4e-44, P = 1.4e-44
  =>sp|P17937|RL71_SCHPO 60S RIBOSOMAL PROTEIN L7A >pir||R5BY7 ribosomal protein
            L7 - fission yeast (Schizosaccharomyces pombe) >gi|295935 (X53575)
            ribosomal protein L7 [Schizosaccharomyces pombe]
            Length = 249
	    Score = 384 (135.2 bits), Expect = 7.9e-35, P = 7.9e-35
  =>sp|P32101|RL7_PICJA 60S RIBOSOMAL PROTEIN L7
            Length = 212
	    Score = 221 (77.8 bits), Expect = 1.5e-17, P = 1.5e-17
  =>sp|P40693|RL72_YEAST 60S RIBOSOMAL PROTEIN L7 >pir||S38194 ribosomal protein
            L7.e homolog YNL002c - yeast (Saccharomyces cerevisiae) >gi|450647
            (L19167) ribosomal protein L7 [Saccharomyces cerevisiae] >gi|496712
            (X77114) ORF N2014 [Saccharomyces cerevisiae] >gnl|PID|e239657
            (Z71278) ORF YNL002c [Saccharomyces cerevisiae]
            Length = 322
	    Score = 215 (75.7 bits), Expect = 6.4e-17, P = 6.4e-17
  =>sp|P32102|RL7_KLULA 60S RIBOSOMAL PROTEIN L7 >pir||S25368 ribosomal protein L7
            - yeast (Kluyveromyces marxianus var. lactis) (fragment) >gi|312819
            (X65545) Rat ribosomal protein L7 homologue [Kluyveromyces lactis]
            Length = 183
	    Score = 214 (75.3 bits), Expect = 8.1e-17, P = 8.1e-17
  =>gnl|PID|d1028880 (AB009525) 155aa long hypothetical 50S ribosomal protein L30
            [Pyrococcus horikoshii] >gnl|PID|d1031813 (AP000007) 155aa long
            hypothetical 50S ribosomal protein L30 [Pyrococcus horikoshii]
            Length = 155
	    Score = 179 (63.0 bits), Expect = 4.9e-13, P = 4.9e-13
  =>sp|O26132|RL30_METTH 50S RIBOSOMAL PROTEIN L30P >gi|2621061 (AE000796)
            ribosomal protein L7 (E.coli L30) [Methanobacterium
            thermoautotrophicum]
            Length = 152
	    Score = 158 (55.6 bits), Expect = 1.4e-10, P = 1.4e-10
  =>gnl|PID|e274826 (Y07778) ribosomal protein L30 [Sulfolobus acidocaldarius]
            Length = 156
	    Score = 155 (54.6 bits), Expect = 3.1e-10, P = 3.1e-10
  =>gi|2648635 (AE000971) LSU ribosomal protein L30P (rpl30P) [Archaeoglobus
            fulgidus]
            Length = 152
	    Score = 150 (52.8 bits), Expect = 1.2e-09, P = 1.2e-09
  =>gi|438279 (Z29141) Ribosomal protein L7 [Arabidopsis thaliana]
           Length = 110
	    Score = 89 (31.3 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
  =>sp|P54046|RL30_METJA 50S RIBOSOMAL PROTEIN L30P >pir||D64359 ribosomal protein
            L7 - Methanococcus jannaschii >gi|1591178 (U67497) LSU ribosomal
            protein L30P (rpmD) [Methanococcus jannaschii]
            Length = 154
	    Score = 131 (46.1 bits), Expect = 1.6e-07, P = 1.6e-07
  =>gi|2275264 (U97365) 60S ribosomal protein L7B [Schizosaccharomyces pombe]
            Length = 99
	    Score = 81 (28.5 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
  =>sp|P14035|RL30_METVA 50S RIBOSOMAL PROTEIN L30 >pir||R5MX30 ribosomal protein
            L30 - Methanococcus vannielii >gi|44769 (X16720) rpL30 (AA 1-154)
            [Methanococcus vannielii]
            Length = 154
	    Score = 109 (38.4 bits), Expect = 0.00026, P = 0.00026
  =>sp|P29258|STP2_PIG NUCLEAR TRANSITION PROTEIN 2 (TP-2) >pir||BGPG2 spermatid
            transition protein 2 - pig
            Length = 137
	    Score = 96 (33.8 bits), Expect = 0.0071, P = 0.0071
  =>pir||S18946 high-sulfur keratin - human >gi|32472 (X63755) high-sulpher
            keratin [Homo sapiens]
            Length = 169
	    Score = 97 (34.1 bits), Expect = 0.034, P = 0.034

>CcruzaQ_594 has the following protein neighbors:
Sequence,   
  =>sp|P27795|H2B_TRYCR HISTONE H2B >pir||S15721 histone H2B - Trypanosoma cruzi
            >pir||S54703 histone H2b - Trypanosoma cruzi >gi|10613 (X60982)
            histone H2b [Trypanosoma cruzi]
            Length = 112
	    Score = 544 (191.5 bits), Expect = 8.6e-52, P = 8.6e-52
  =>sp|P27893|H2B_LEIEN HISTONE H2B >pir||A39671 histone H2B - Leishmania
            enriettii >gi|159344 (M38215) histone H2B [Leishmania enriettii]
            >gi|159345 (M38215) histone H2B [Leishmania enriettii] >gi|159346
            (M38215) histone H2B [Leishmania enriettii]
            Length = 111
	    Score = 399 (140.5 bits), Expect = 2.0e-36, P = 2.0e-36
  =>gnl|PID|e319093 (Y13396) histone H2B [Leishmania infantum]
            Length = 111
	    Score = 388 (136.6 bits), Expect = 2.9e-35, P = 2.9e-35
  =>gnl|PID|e242590 (Z73102) B0035.8 [Caenorhabditis elegans] >gi|1326371 (U58750)
            Similar to Histone. [Caenorhabditis elegans] >gnl|PID|e330418
            (Z82271) F54E12.4 [Caenorhabditis elegans] >gnl|PID|e1247010
            (Z92789) H02I12.6 [Caenorhabditis elegans]
            Length = 123
	    Score = 294 (103.5 bits), Expect = 2.7e-25, P = 2.7e-25
  =>sp|P02287|H2B1_PSAMI HISTONE H2B.1, EMBRYONIC >gi|161400 (J01184) histone H2B
            [Psammechinus miliaris]
            Length = 123
	    Score = 288 (101.4 bits), Expect = 1.2e-24, P = 1.2e-24
  =>pir||HSUR2M histone H2B.1, embryonic - sea urchin (Psammechinus miliaris)
            Length = 122
	    Score = 288 (101.4 bits), Expect = 1.2e-24, P = 1.2e-24
  =>gnl|PID|e348135 (Z70750) C50F4.5 [Caenorhabditis elegans]
            Length = 123
	    Score = 288 (101.4 bits), Expect = 1.2e-24, P = 1.2e-24
  =>gi|2149886 (U93852) histone H2B [Euplotes crassus] >gi|2149888 (U93853)
            histone H2B [Euplotes crassus]
            Length = 113
	    Score = 288 (101.4 bits), Expect = 1.2e-24, P = 1.2e-24
  =>prf||0912260A histone H2B [Strongylocentrotus purpuratus]
            Length = 123
	    Score = 284 (100.0 bits), Expect = 3.1e-24, P = 3.1e-24
  =>sp|P02288|H2B2_PSAMI HISTONE H2B.2, EMBRYONIC >gi|10033 (X01344) histone H2B
            (aa 1-123) [Psammechinus miliaris] >gi|161386 (M10645) histone H2B
            [Psammechinus miliaris]
            Length = 123
	    Score = 283 (99.6 bits), Expect = 3.9e-24, P = 3.9e-24
  =>gi|10020 (V01143) reading frame for H2B [Psammechinus miliaris]
          Length = 123
	    Score = 283 (99.6 bits), Expect = 3.9e-24, P = 3.9e-24
  =>pir||I48375 histone 2b protein - mouse >gi|515835 (X80328) histone 2b protein
            [Mus musculus]
            Length = 126
	    Score = 283 (99.6 bits), Expect = 3.9e-24, P = 3.9e-24
  =>pir||HSUR6M histone H2B.2, embryonic - sea urchin (Psammechinus miliaris)
            Length = 122
	    Score = 283 (99.6 bits), Expect = 3.9e-24, P = 3.9e-24
  =>pir||HSKW22 histone H2B - Caenorhabditis elegans >gi|6755 (X15633) histone
            protein [Caenorhabditis elegans] >gnl|PID|e1180967 (Z83245) ZK131.9
            [Caenorhabditis elegans] >gnl|PID|e1180969 (Z83245) ZK131.5
            [Caenorhabditis elegans] >gi|2935374 (AF047656) C. elegans histone
            2B (SP:P04255) [Caenorhabditis elegans]
            Length = 122
	    Score = 281 (98.9 bits), Expect = 6.4e-24, P = 6.4e-24
  =>gi|1458295 (U64843) Similar to histone H2B. [Caenorhabditis elegans]
            >gi|1458296 (U64843) Similar to histone H2B. [Caenorhabditis
            elegans] >gi|1458310 (U64845) Similar to histone H2B
            [Caenorhabditis elegans]
            Length = 123
	    Score = 281 (98.9 bits), Expect = 6.4e-24, P = 6.4e-24
  =>gnl|PID|e1188313 (Z93388) T10C6.11 [Caenorhabditis elegans]
            Length = 141
	    Score = 281 (98.9 bits), Expect = 6.4e-24, P = 6.4e-24
  =>sp|P30756|H2B2_MAIZE HISTONE H2B.2 >pir||S28049 histone H2B - maize >gi|22325
            (X57313) H2B histone [Zea mays]
            Length = 150
	    Score = 280 (98.6 bits), Expect = 8.2e-24, P = 8.2e-24
  =>sp|P04255|H2B_CAEEL HISTONE H2B.1 AND H2B.2
            Length = 123
	    Score = 280 (98.6 bits), Expect = 8.2e-24, P = 8.2e-24
  =>sp|P35069|H2B3_TIGCA HISTONE H2B.3 >pir||D56612 histone H2B-3 - Tigriopus
            californicus >gi|161902 (M84799) histone H2B-3 [Tigriopus
            californicus]
            Length = 123
	    Score = 278 (97.9 bits), Expect = 1.3e-23, P = 1.3e-23
  =>sp|P54348|H2B5_MAIZE HISTONE H2B >gi|473605 (U08226) histone H2B [Zea mays]
            Length = 154
	    Score = 278 (97.9 bits), Expect = 1.3e-23, P = 1.3e-23
  =>sp|P30755|H2B1_MAIZE HISTONE H2B.1 >pir||S28048 histone H2B - maize >gi|22323
            (X57312) H2B histone [Zea mays]
            Length = 151
	    Score = 278 (97.9 bits), Expect = 1.3e-23, P = 1.3e-23
  =>sp|P35068|H2B1_TIGCA HISTONE H2B.1/H2B.2 >pir||B56612 histone H2B-1 -
            Tigriopus californicus >gi|161897 (M84797) histone H2B-1 [Tigriopus
            californicus] >gi|161900 (M84798) histone H2B-2 [Tigriopus
            californicus] >bbs|118862 (S49144) histone H2B-1 [Tigriopus
            californicus, Peptide, 123 aa]
            Length = 123
	    Score = 277 (97.5 bits), Expect = 1.7e-23, P = 1.7e-23
  =>gi|161370 (M11088) histone H2B-1 [Psammechinus miliaris]
           Length = 123
	    Score = 277 (97.5 bits), Expect = 1.7e-23, P = 1.7e-23
  =>sp|P16888|H2BL_STRPU LATE HISTONE H2B.L1 >gi|10239 (X06640) histone L1 H2b
            [Strongylocentrotus purpuratus]
            Length = 123
	    Score = 277 (97.5 bits), Expect = 1.7e-23, P = 1.7e-23
  =>sp|P10854|H2B2_MOUSE HISTONE H2B 291B >pir||F40335 histone H2B.1 (b) - human
            >gi|51306 (X05863) histone H2B-291B (AA 1 - 126) [Mus musculus]
            >gi|184080 (M60751) histone H2B.1 [Homo sapiens] >gnl|PID|e1301465
            (AJ223353) Histone H2B [Homo sapiens]
            Length = 126
	    Score = 277 (97.5 bits), Expect = 1.7e-23, P = 1.7e-23
  =>pir||S56687 histone H2B153 - wheat >gnl|PID|d1007736 (D37945) protein H2B153
            [Triticum aestivum]
            Length = 135
	    Score = 277 (97.5 bits), Expect = 1.7e-23, P = 1.7e-23
  =>sp|P10853|H2B1_MOUSE HISTONE H2B 291A >gi|51303 (X05862) histone H2B-291A (AA
            1 - 126) [Mus musculus] >gi|1458130 (U62669) histone H2b-F [Mus
            musculus]
            Length = 126
	    Score = 277 (97.5 bits), Expect = 1.7e-23, P = 1.7e-23
  =>gnl|PID|e286632 (Z83740) histone H2B [Homo sapiens] >gnl|PID|e1299207
            (AL009179) dJ97D16.4 (Histone H2B) [Homo sapiens]
            Length = 126
	    Score = 277 (97.5 bits), Expect = 1.7e-23, P = 1.7e-23
  =>pir||A37363 histone H2B, testis - mouse (fragment) >gi|556310 (M25487)
            spermatid-specific [Mus musculus]
            Length = 134
	    Score = 276 (97.2 bits), Expect = 2.2e-23, P = 2.2e-23
  =>pir||S56685 histone H2B-8 - wheat >gnl|PID|d1007734 (D37943) protein H2B-8
            [Triticum aestivum]
            Length = 138
	    Score = 276 (97.2 bits), Expect = 2.2e-23, P = 2.2e-23
  =>gnl|PID|e289124 (Z83336) histone H2B [Homo sapiens] >gnl|PID|e1287735 (Z98744)
            histone H2B [Homo sapiens]
            Length = 126
	    Score = 276 (97.2 bits), Expect = 2.2e-23, P = 2.2e-23
  =>sp|P33778|H2B0_HUMAN HISTONE H2B.1 >pir||I37445 histone H2B.1 - human
            >gi|31977 (X57127) histone H2B [Homo sapiens]
            Length = 126
	    Score = 275 (96.8 bits), Expect = 2.8e-23, P = 2.8e-23
  =>pir||B26399 histone H2B.2 - chicken >gi|63462 (X05099) histone H2B (AA 1 -
            126) [Gallus gallus] >gi|1493810 (U37575) histone H2B [Gallus
            gallus]
            Length = 126
	    Score = 275 (96.8 bits), Expect = 2.8e-23, P = 2.8e-23
  =>gnl|PID|e268235 (Z80783) histone H2B [Homo sapiens]
            Length = 126
	    Score = 275 (96.8 bits), Expect = 2.8e-23, P = 2.8e-23
  =>gi|2564106 (AF007904) histone H2B [Chaetopterus variopedatus]
            Length = 123
	    Score = 275 (96.8 bits), Expect = 2.8e-23, P = 2.8e-23
  =>gnl|PID|e1285647 (AJ224932) histone H2B-3 [Lycopersicon esculentum]
            Length = 137
	    Score = 275 (96.8 bits), Expect = 2.8e-23, P = 2.8e-23
  =>gnl|PID|e1285651 (AJ224934) histone H2B [Lycopersicon esculentum]
            Length = 142
	    Score = 275 (96.8 bits), Expect = 2.8e-23, P = 2.8e-23
  =>pir||A30221 histone H2B.8 - chicken
            Length = 126
	    Score = 274 (96.5 bits), Expect = 3.5e-23, P = 3.5e-23
  =>sp|P49120|H2B4_MAIZE HISTONE H2B.4 >gi|577819 (X69961) H2B histone [Zea mays]
            Length = 137
	    Score = 274 (96.5 bits), Expect = 3.5e-23, P = 3.5e-23
  =>sp|P27807|H2B1_WHEAT HISTONE H2B >pir||S22323 histone H2B - wheat >gi|21801
            (X59873) histone H2B [Triticum aestivum]
            Length = 152
	    Score = 274 (96.5 bits), Expect = 3.5e-23, P = 3.5e-23
  =>sp|P02289|H2BE_STRPU HISTONE H2B, EMBRYONIC
            Length = 124
	    Score = 274 (96.5 bits), Expect = 3.5e-23, P = 3.5e-23
  =>sp|P16889|H2BN_STRPU LATE HISTONE H2B.L3
            Length = 123
	    Score = 274 (96.5 bits), Expect = 3.5e-23, P = 3.5e-23
  =>prf||701196A histone H2B [Bos taurus]
            Length = 125
	    Score = 274 (96.5 bits), Expect = 3.5e-23, P = 3.5e-23
  =>pir||HSUR2S histone H2B, embryonic - sea urchin (Strongylocentrotus
            purpuratus)
            Length = 123
	    Score = 274 (96.5 bits), Expect = 3.5e-23, P = 3.5e-23
  =>sp|P54345|H2B2_CHLRE HISTONE H2B-II >pir||S59583 histone H2B (clone CH-II) -
            Chlamydomonas reinhardtii >gi|571472 (U16724) histone H2B
            [Chlamydomonas reinhardtii]
            Length = 156
	    Score = 273 (96.1 bits), Expect = 4.5e-23, P = 4.5e-23
  =>sp|P02278|H2B_HUMAN HISTONE H2B (H2B.1 A) >pir||E40335 histone H2B.1 (a) -
            human >gi|184078 (M60750) histone H2B.1 [Homo sapiens]
            >gnl|PID|e268231 (Z80779) histone H2B [Homo sapiens]
            >gnl|PID|e268234 (Z80782) histone H2B [Homo sapiens]
            Length = 126
	    Score = 273 (96.1 bits), Expect = 4.5e-23, P = 4.5e-23
  =>pir||I48401 histone H2b - mouse >gi|51315 (X02621) histone H2b (aa 1-136) [Mus
            musculus]
            Length = 126
	    Score = 273 (96.1 bits), Expect = 4.5e-23, P = 4.5e-23
  =>pir||HSHUB2 histone H2B.2 - human >pir||HSBO22 histone H2B - bovine
            >prf||1109175B homeostatic thymus hormone beta [Bos taurus]
            >prf||0503212A histone H2B [Homo sapiens]
            Length = 125
	    Score = 273 (96.1 bits), Expect = 4.5e-23, P = 4.5e-23
  =>gnl|PID|e268233 (Z80781) histone H2B [Homo sapiens]
            Length = 126
	    Score = 273 (96.1 bits), Expect = 4.5e-23, P = 4.5e-23
  =>gnl|PID|e1285913 (AL021807) dJ86C11.2 [Homo sapiens] >gnl|PID|e1301463
            (AJ223352) Histone H2B [Homo sapiens]
            Length = 126
	    Score = 273 (96.1 bits), Expect = 4.5e-23, P = 4.5e-23
  =>sp|P02293|H2B1_YEAST HISTONE H2B.1 >pir||HSBY22 histone H2B.1 - yeast
            (Saccharomyces cerevisiae) >gi|3775 (V01307) histone H2B1
            [Saccharomyces cerevisiae] >gi|171633 (J01327) histone
            [Saccharomyces cerevisiae] >gi|728680 (Z48612) H2b1p [Saccharomyces
            cerevisiae]
            Length = 131
	    Score = 272 (95.7 bits), Expect = 5.8e-23, P = 5.8e-23
  =>sp|P54347|H2B4_CHLRE HISTONE H2B-IV >pir||S59591 histone H2B (clone CH-IV) -
            Chlamydomonas reinhardtii >gi|571482 (U16726) histone H2B
            [Chlamydomonas reinhardtii]
            Length = 153
	    Score = 272 (95.7 bits), Expect = 5.8e-23, P = 5.8e-23
  =>sp|P23754|H2B_EMENI HISTONE H2B >pir||S11937 histone H2B - Emericella nidulans
            >gi|296335 (X55547) H2B [Emericella nidulans] >prf||1707275A
            histone H2B [Emericella nidulans]
            Length = 140
	    Score = 272 (95.7 bits), Expect = 5.8e-23, P = 5.8e-23
  =>pir||I37467 histone H2B - human >gi|510991 (X57985) histone H2B [Homo sapiens]
            Length = 126
	    Score = 272 (95.7 bits), Expect = 5.8e-23, P = 5.8e-23
  =>pir||JH0362 histone H2B.V - chicken >gi|211847 (M57901) histone H2B [Gallus
            gallus]
            Length = 126
	    Score = 272 (95.7 bits), Expect = 5.8e-23, P = 5.8e-23
  =>prf||0506206A histone H2B [Rattus norvegicus]
            Length = 125
	    Score = 272 (95.7 bits), Expect = 5.8e-23, P = 5.8e-23
  =>sp|P50565|H2B1_CHLRE HISTONE H2B-I >pir||S59125 histone H2B - Chlamydomonas
            reinhardtii >gi|790702 (L41841) histone H2B [Chlamydomonas
            reinhardtii]
            Length = 153
	    Score = 272 (95.7 bits), Expect = 5.8e-23, P = 5.8e-23
  =>gnl|PID|e286630 (Z83738) histone H2B [Homo sapiens]
            Length = 126
	    Score = 272 (95.7 bits), Expect = 5.8e-23, P = 5.8e-23
  =>gnl|PID|e1285645 (AJ224931) histone H2B-2 [Lycopersicon esculentum]
            Length = 139
	    Score = 272 (95.7 bits), Expect = 5.8e-23, P = 5.8e-23
  =>gnl|PID|e1285917 (AL021807) dJ86C11.6 [Homo sapiens]
            Length = 125
	    Score = 272 (95.7 bits), Expect = 5.8e-23, P = 5.8e-23
  =>gnl|PID|e1287743 (Z98744) histone H2B [Homo sapiens]
            Length = 125
	    Score = 272 (95.7 bits), Expect = 5.8e-23, P = 5.8e-23
  =>sp|P02279|H2B_CHICK HISTONE H2B >pir||S14510 histone H2B - chicken >gi|63434
            (X07766) histone H2B [Gallus gallus] >gi|63452 (X05095) histone H2B
            (AA 1 - 126) [Gallus gallus] >gi|63456 (X05097) histone H2B (AA 1 -
            126) [Gallus gallus] >gi|63458 (X57263) histone H2B [Gallus gallus]
            >gi|63460 (X05098) histone H2B (AA 1 - 126) [Gallus gallus]
            >gi|63468 (V00415) histone H2b [Gallus gallus] >gi|211845 (J00871)
            histone H2B [Gallus gallus]
            Length = 126
	    Score = 271 (95.4 bits), Expect = 7.3e-23, P = 7.3e-23
  =>gi|577825 (X69960) H2B histone [Zea mays]
           Length = 153
	    Score = 271 (95.4 bits), Expect = 7.3e-23, P = 7.3e-23
  =>sp|P02284|H2B_PATGR HISTONE H2B, GONADAL >pir||HSKP22 histone H2B, gonadal -
            sandpaper limpet
            Length = 121
	    Score = 271 (95.4 bits), Expect = 7.3e-23, P = 7.3e-23
  =>sp|P30757|H2B_SIPNU HISTONE H2B
            Length = 122
	    Score = 271 (95.4 bits), Expect = 7.3e-23, P = 7.3e-23
  =>pir||S16084 histone H2B - sipunculid (Sipunculus nudus)
            Length = 123
	    Score = 271 (95.4 bits), Expect = 7.3e-23, P = 7.3e-23
  =>gnl|PID|d1024891 (D70896) histone H2B [Gallus gallus]
            Length = 126
	    Score = 271 (95.4 bits), Expect = 7.3e-23, P = 7.3e-23
  =>pir||S21939 histone H2B - fruit fly (Drosophila hydei) >gi|7436 (X52576)
            histone H2b [Drosophila hydei]
            Length = 123
	    Score = 270 (95.0 bits), Expect = 9.4e-23, P = 9.4e-23
  =>pir||S33220 histone H2B.A - African clawed frog >gi|296216 (X71389) histone
            H2B [Xenopus laevis]
            Length = 126
	    Score = 270 (95.0 bits), Expect = 9.4e-23, P = 9.4e-23
  =>sp|P16867|H2B3_VOLCA HISTONE H2B-III >pir||JQ0795 histone H2B.III - Volvox
            carteri >gi|170656 (M31921) histone H2B-III [Volvox carteri]
            Length = 157
	    Score = 270 (95.0 bits), Expect = 9.4e-23, P = 9.4e-23
  =>sp|P23527|H2B2_HUMAN HISTONE H2B.2 >pir||A56624 histone H2B.2 - human
            >gi|31979 (X57138) histone H2A.2 [Homo sapiens]
            Length = 126
	    Score = 270 (95.0 bits), Expect = 9.4e-23, P = 9.4e-23
  =>sp|P02281|H2B1_XENLA HISTONE H2B.1 >gi|64776 (X03018) histone H2B (aa 1-126)
            [Xenopus laevis] >gi|214283 (M21287) histone H2B [Xenopus laevis]
            Length = 126
	    Score = 270 (95.0 bits), Expect = 9.4e-23, P = 9.4e-23
  =>gi|63454 (X05096) histone H2B (AA 1 - 126) [Gallus gallus]
          Length = 126
	    Score = 270 (95.0 bits), Expect = 9.4e-23, P = 9.4e-23
  =>pir||HSXLB1 histone H2B.1 - African clawed frog
            Length = 125
	    Score = 270 (95.0 bits), Expect = 9.4e-23, P = 9.4e-23
  =>gi|1458141 (U62673) histone H2b-613 [Mus musculus]
            Length = 126
	    Score = 270 (95.0 bits), Expect = 9.4e-23, P = 9.4e-23
  =>gi|1458147 (U62675) histone H2b-616 [Mus musculus]
            Length = 126
	    Score = 270 (95.0 bits), Expect = 9.4e-23, P = 9.4e-23
  =>gi|1870698 (U84115) cleavage stage histone H2B [Psammechinus miliaris]
            Length = 127
	    Score = 270 (95.0 bits), Expect = 9.4e-23, P = 9.4e-23
  =>pir||B30221 histone H2B.8 - chicken (fragment)
            Length = 111
	    Score = 269 (94.7 bits), Expect = 1.2e-22, P = 1.2e-22
  =>gi|63440 (X07763) histone H2B [Gallus gallus]
          Length = 120
	    Score = 269 (94.7 bits), Expect = 1.2e-22, P = 1.2e-22
  =>sp|P02294|H2B2_YEAST HISTONE H2B.2 >pir||HSBYB2 histone H2B - yeast
            (Saccharomyces cerevisiae) >gi|3777 (V01308) histone h2b-2
            [Saccharomyces cerevisiae] >gi|171635 (J01328) histone H2B-2
            [Saccharomyces cerevisiae] >gi|403314 (Z26494) histone H2B
            [Saccharomyces cerevisiae] >gi|535976 (Z35763) ORF YBL002w
            [Saccharomyces cerevisiae] >prf||2118405C histone H2B
            [Saccharomyces cerevisiae]
            Length = 131
	    Score = 269 (94.7 bits), Expect = 1.2e-22, P = 1.2e-22
  =>sp|P54346|H2B3_CHLRE HISTONE H2B-III >pir||S59587 histone H2B (clone CH-III) -
            Chlamydomonas reinhardtii >gi|571477 (U16725) histone H2B
            [Chlamydomonas reinhardtii]
            Length = 153
	    Score = 269 (94.7 bits), Expect = 1.2e-22, P = 1.2e-22
  =>sp|P16890|H2BO_STRPU LATE HISTONE H2B.L4 >gi|829222 (X06643) histone L4 H2b
            (107 AA) [Strongylocentrotus purpuratus]
            Length = 107
	    Score = 269 (94.7 bits), Expect = 1.2e-22, P = 1.2e-22
  =>sp|P02286|H2B_ASTRU HISTONE H2B, GONADAL >pir||HSSF22 histone H2B, gonadal -
            starfish (Asterias rubens)
            Length = 121
	    Score = 269 (94.7 bits), Expect = 1.2e-22, P = 1.2e-22
  =>sp|P02282|H2B_SALTR HISTONE H2B
            Length = 124
	    Score = 269 (94.7 bits), Expect = 1.2e-22, P = 1.2e-22
  =>gi|63450 (X05094) Histone H2B (AA 1 - 126) [Gallus gallus]
          Length = 126
	    Score = 269 (94.7 bits), Expect = 1.2e-22, P = 1.2e-22
  =>pir||HSSB22 histone H2B, gonadal - brown trout
            Length = 123
	    Score = 269 (94.7 bits), Expect = 1.2e-22, P = 1.2e-22
  =>gnl|PID|e332397 (Y12576) histone H2B [Arabidopsis thaliana]
            Length = 150
	    Score = 269 (94.7 bits), Expect = 1.2e-22, P = 1.2e-22
  =>sp|P17271|H2B_DROHY HISTONE H2B >pir||S09658 histone H2B - fruit fly
            (Drosophila hydei) >gi|7442 (X17072) histone H2B [Drosophila hydei]
            Length = 123
	    Score = 268 (94.3 bits), Expect = 1.5e-22, P = 1.5e-22
  =>sp|P05621|H2B2_WHEAT HISTONE H2B.2 >pir||HSWT2B histone H2B.2 - wheat
            Length = 149
	    Score = 268 (94.3 bits), Expect = 1.5e-22, P = 1.5e-22
  =>sp|P04913|H2B1_SCHPO HISTONE H2B-ALPHA (H2B.1) >gi|173405 (M11494) histone
            H2B-alpha [Schizosaccharomyces pombe]
            Length = 126
	    Score = 267 (94.0 bits), Expect = 1.9e-22, P = 1.9e-22
  =>pir||HSZPB2 histone H2B.1 - fission yeast (Schizosaccharomyces pombe) >gi|4958
            (X05220) H2b.1 histone (AA 1 - 126) [Schizosaccharomyces pombe]
            >prf||1202262C histone H2B.1 [Schizosaccharomyces pombe]
            Length = 126
	    Score = 267 (94.0 bits), Expect = 1.9e-22, P = 1.9e-22
  =>gi|64322 (X02916) histone H2B (aa 1-124) [Oncorhynchus mykiss]
          Length = 124
	    Score = 267 (94.0 bits), Expect = 1.9e-22, P = 1.9e-22
  =>pir||HSTR2B histone H2B - rainbow trout
            Length = 123
	    Score = 267 (94.0 bits), Expect = 1.9e-22, P = 1.9e-22
  =>gnl|PID|e268232 (Z80780) histone H2B [Homo sapiens]
            Length = 126
	    Score = 267 (94.0 bits), Expect = 1.9e-22, P = 1.9e-22
  =>sp|P21897|H2B_CHITH HISTONE H2B >pir||S18005 histone H2B - midge (Chironomus
            thummi thummi) >pir||D56580 histone H2B - midge (Chironomus thummi
            thummi) >gi|7086 (X56335) histone H2B gene product [Chironomus
            thummi]
            Length = 125
	    Score = 266 (93.6 bits), Expect = 2.5e-22, P = 2.5e-22
  =>sp|P02283|H2B_DROME HISTONE H2B >pir||S10095 histone H2B - fruit fly
            (Drosophila melanogaster) >gnl|PID|e1173148 (X14215) H2B histone
            [Drosophila melanogaster]
            Length = 123
	    Score = 266 (93.6 bits), Expect = 2.5e-22, P = 2.5e-22
  =>pir||HSFF22 histone H2B - fruit fly (Drosophila melanogaster)
            Length = 122
	    Score = 266 (93.6 bits), Expect = 2.5e-22, P = 2.5e-22
  =>gi|10236 (X06642) histone L3 H2b [Strongylocentrotus purpuratus]
          Length = 123
	    Score = 265 (93.3 bits), Expect = 3.2e-22, P = 3.2e-22
  =>pir||S56684 histone H2B-6 - wheat >gnl|PID|d1007733 (D37942) protein H2B-6
            [Triticum aestivum]
            Length = 136
	    Score = 265 (93.3 bits), Expect = 3.2e-22, P = 3.2e-22
  =>sp|P06899|H2B1_HUMAN HISTONE H2B.1 >pir||HSHUB1 histone H2B.1 - human
            >gi|32113 (X00088) histone H2b [Homo sapiens]
            Length = 125
	    Score = 265 (93.3 bits), Expect = 3.2e-22, P = 3.2e-22
  =>sp|P14001|H2B_CAIMO HISTONE H2B >pir||I50458 histone H2B - muscovy duck
            >gi|62731 (X14731) histone H2B (AA 1-126) [Cairina moschata]
            Length = 126
	    Score = 265 (93.3 bits), Expect = 3.2e-22, P = 3.2e-22
  =>sp|P02285|H2B_MARGL HISTONE H2B, SPERM >pir||HSSF2M histone H2B, sperm -
            starfish (Marthasterias glacialis)
            Length = 120
	    Score = 265 (93.3 bits), Expect = 3.2e-22, P = 3.2e-22
  =>sp|P78567|H2B_AGABI HISTONE H2B >gnl|PID|e218396 (X94188) histone H2B
            [Agaricus bisporus]
            Length = 143
	    Score = 265 (93.3 bits), Expect = 3.2e-22, P = 3.2e-22
  =>sp|P06900|H2B2_XENLA HISTONE H2B.2 >pir||I51446 histone H2B - African clawed
            frog >gi|64770 (X03017) H2B (aa 1-126) [Xenopus laevis] >gi|214277
            (M21286) histone H2B [Xenopus laevis]
            Length = 126
	    Score = 264 (92.9 bits), Expect = 4.1e-22, P = 4.1e-22
  =>pir||HSXLB2 histone H2B.2 - African clawed frog
            Length = 125
	    Score = 264 (92.9 bits), Expect = 4.1e-22, P = 4.1e-22
  =>gnl|PID|e273945 (Y07745) histone H2B like protein [Arabidopsis thaliana]
            Length = 145
	    Score = 264 (92.9 bits), Expect = 4.1e-22, P = 4.1e-22
  =>gi|2558962 (AF025667) histone H2B1 [Gossypium hirsutum]
            Length = 147
	    Score = 264 (92.9 bits), Expect = 4.1e-22, P = 4.1e-22
  =>sp|P19374|H2B_PLADU HISTONE H2B >pir||S11313 histone H2B - polychaete
            (Platynereis dumerilii) >gi|9819 (X53330) H2B protein (AA 1 - 123)
            [Platynereis dumerilii]
            Length = 123
	    Score = 263 (92.6 bits), Expect = 5.2e-22, P = 5.2e-22
  =>gnl|PID|e195617 (X90778) testis-specific histone H2B [Mus musculus]
            Length = 127
	    Score = 263 (92.6 bits), Expect = 5.2e-22, P = 5.2e-22
  =>sp|P07795|H2B4_PSAMI LATE HISTONE H2B.2.2 >gi|161352 (M14141) histone H2B-2.2
            [Psammechinus miliaris]
            Length = 124
	    Score = 261 (91.9 bits), Expect = 8.4e-22, P = 8.4e-22
  =>sp|P07794|H2B3_PSAMI LATE HISTONE H2B.2.1 >pir||B25077 histone H2B.2 - sea
            urchin (Psammechinus miliaris) >gi|161357 (M14140) histone H2B-2.1
            [Psammechinus miliaris]
            Length = 124
	    Score = 261 (91.9 bits), Expect = 8.4e-22, P = 8.4e-22
  =>sp|P06145|H2B1_STRPU HISTONE H2B.1, SPERM >pir||HSURBS histone H2B.1, sperm -
            sea urchin (Strongylocentrotus purpuratus) >gi|10233 (X04681) H2B-1
            protein (AA 1-140) [Strongylocentrotus purpuratus] >gi|10234
            (X04681) H2B-1 protein (AA 1-140) [Strongylocentrotus purpuratus]
            Length = 140
	    Score = 261 (91.9 bits), Expect = 8.4e-22, P = 8.4e-22
  =>pir||S56686 histone H2B123 - wheat >gnl|PID|d1007735 (D37944) protein H2B123
            [Triticum aestivum]
            Length = 121
	    Score = 261 (91.9 bits), Expect = 8.4e-22, P = 8.4e-22
  =>sp|P02292|H2B3_PARAN HISTONE H2B.3, SPERM >pir||HSUR8P histone H2B.3, sperm -
            sea urchin (Parechinus angulosus)
            Length = 148
	    Score = 261 (91.9 bits), Expect = 8.4e-22, P = 8.4e-22
  =>gi|2746719 (AF038386) histone H2B [Capsicum annuum]
            Length = 145
	    Score = 260 (91.5 bits), Expect = 1.1e-21, P = 1.1e-21
  =>sp|Q00729|H2BT_RAT HISTONE H2B, TESTIS >pir||S26187 histone H2B, testis - rat
            >gi|57353 (X59962) TH2B histone [Rattus norvegicus]
            Length = 127
	    Score = 259 (91.2 bits), Expect = 1.4e-21, P = 1.4e-21
  =>sp|P48557|H2B_HOLTU HISTONE H2B >pir||S49484 histone H2B - sea cucumber
            (Holothuria tubulosa) >gi|559457 (Z46225) histone H2B [Holothuria
            tubulosa] >prf||2209257A histone H2B [Holothuria tubulosa]
            Length = 123
	    Score = 258 (90.8 bits), Expect = 1.8e-21, P = 1.8e-21
  =>pir||S33221 histone H2B.B - African clawed frog >gi|296405 (X71390) histone
            H2B [Xenopus laevis]
            Length = 126
	    Score = 258 (90.8 bits), Expect = 1.8e-21, P = 1.8e-21
  =>sp|P16868|H2B4_VOLCA HISTONE H2B-IV >pir||JQ0797 histone H2B.IV - Volvox
            carteri >gi|170659 (M31922) histone H2B-IV [Volvox carteri]
            Length = 155
	    Score = 258 (90.8 bits), Expect = 1.8e-21, P = 1.8e-21
  =>sp|Q00715|H2B_RAT HISTONE H2B >pir||S26185 histone H2B - rat >gi|56346
            (X59961) H2B histone [Rattus norvegicus]
            Length = 125
	    Score = 258 (90.8 bits), Expect = 1.8e-21, P = 1.8e-21
  =>pir||B45945 histone H2B - rat
            Length = 124
	    Score = 258 (90.8 bits), Expect = 1.8e-21, P = 1.8e-21
  =>gi|10252 (V01356) reading frame of H2B [Strongylocentrotus purpuratus]
          >gi|161508 (J01174) histone H2b [Strongylocentrotus purpuratus]
          Length = 124
	    Score = 257 (90.5 bits), Expect = 2.2e-21, P = 2.2e-21
  =>sp|P02291|H2B2_PARAN HISTONE H2B.2, SPERM >pir||HSUR6P histone H2B.2, sperm -
            sea urchin (Parechinus angulosus)
            Length = 143
	    Score = 257 (90.5 bits), Expect = 2.2e-21, P = 2.2e-21
  =>pir||A61301 histone H2B - Tetrahymena pyriformis (SGC5)
            Length = 120
	    Score = 257 (90.5 bits), Expect = 2.2e-21, P = 2.2e-21
  =>prf||0803211A histone H2B [Tetrahymena pyriformis]
            Length = 119
	    Score = 257 (90.5 bits), Expect = 2.2e-21, P = 2.2e-21
  =>sp|P16887|H2B2_STRPU HISTONE H2B.2, SPERM >pir||HSURB1 histone H2B.2, sperm -
            sea urchin (Strongylocentrotus purpuratus) >gi|161515 (M13634)
            histone H2b-2 [Strongylocentrotus purpuratus]
            Length = 144
	    Score = 256 (90.1 bits), Expect = 2.9e-21, P = 2.9e-21
  =>sp|P08993|H2B1_TETTH HISTONE H2B.1 (H2B-1) >pir||A27097 histone H2B.1 -
            Tetrahymena thermophila (SGC5) >gi|161784 (M31332) histone H2B-1
            [Tetrahymena thermophila] >gi|578563 (X05543) Histone H2B-1
            [Tetrahymena thermophila]
            Length = 122
	    Score = 256 (90.1 bits), Expect = 2.9e-21, P = 2.9e-21
  =>sp|P08994|H2B2_TETTH HISTONE H2B.2 (H2B-2) >pir||B27097 histone H2B.2 -
            Tetrahymena thermophila (SGC5) >gi|161786 (M31333) histone H2B-2
            [Tetrahymena thermophila] >gi|578564 (X05544) Histone H2B-2
            [Tetrahymena thermophila]
            Length = 122
	    Score = 256 (90.1 bits), Expect = 2.9e-21, P = 2.9e-21
  =>prf||0702236A histone H2B [Tetrahymena sp.]
            Length = 119
	    Score = 256 (90.1 bits), Expect = 2.9e-21, P = 2.9e-21
  =>sp|P06146|H2B2_LYTPI HISTONE H2B.2, SPERM >pir||HSURB2 histone H2B.2, sperm -
            sea urchin (Lytechinus pictus) >gi|9619 (X04384) H2B-2 (aa 1-143)
            [Lytechinus pictus]
            Length = 143
	    Score = 255 (89.8 bits), Expect = 3.6e-21, P = 3.6e-21
  =>pir||A39178 histone H2B (variant HHC289) - human (fragment) >gi|184086
            (M60756) histone H2B.1 [Homo sapiens]
            Length = 101
	    Score = 255 (89.8 bits), Expect = 3.6e-21, P = 3.6e-21
  =>pir||A45945 histone H2B, testis-specific - rat >gi|204603 (M18045) histone H2B
            [Rattus norvegicus] >gi|204605 (M18046) histone H2B [Rattus
            norvegicus]
            Length = 127
	    Score = 255 (89.8 bits), Expect = 3.6e-21, P = 3.6e-21
  =>pir||S48838 histone H2B - garden asparagus >gi|563329 (X82362) histone 2B
            [Asparagus officinalis]
            Length = 152
	    Score = 255 (89.8 bits), Expect = 3.6e-21, P = 3.6e-21
  =>sp|P27326|H2B_URECA HISTONE H2B >pir||S21850 histone H2B - spoonworm (Urechis
            caupo) >pir||C56618 histone H2B - spoonworm (Urechis caupo)
            >gi|10865 (X58895) H2B histone [Urechis caupo]
            Length = 123
	    Score = 254 (89.4 bits), Expect = 4.7e-21, P = 4.7e-21
  =>gnl|PID|e303321 (Y11208) histone H2B1 [Nicotiana tabacum]
            Length = 146
	    Score = 254 (89.4 bits), Expect = 4.7e-21, P = 4.7e-21
  =>gi|161366 (M11086) histone H2B-1 [Psammechinus miliaris]
           Length = 137
	    Score = 253 (89.1 bits), Expect = 5.9e-21, P = 5.9e-21
  =>sp|P02290|H2B1_PARAN HISTONE H2B.1, SPERM >pir||HSUR2P histone H2B.1, sperm -
            sea urchin (Parechinus angulosus)
            Length = 144
	    Score = 250 (88.0 bits), Expect = 1.2e-20, P = 1.2e-20
  =>sp|P37210|H2B_NEUCR HISTONE H2B >pir||PN0142 histone H2B - Neurospora crassa
            (fragment) >prf||1304181A histone H2b [Neurospora crassa]
            Length = 94
	    Score = 247 (86.9 bits), Expect = 2.6e-20, P = 2.6e-20
  =>sp|P40283|H2B_ARATH HISTONE H2B
            Length = 122
	    Score = 246 (86.6 bits), Expect = 3.3e-20, P = 3.3e-20
  =>sp|P35067|H2B_ACRFO HISTONE H2B >gi|166309 (L11067) histone H2B [Acropora
            formosa] >bbs|140811 (S67324) histone H2B, H2B [Acropora
            formosa=coral, sperms, Peptide, 125 aa] [Acropora formosa]
            >prf||1920342B histone H2B [Acropora formosa]
            Length = 125
	    Score = 245 (86.2 bits), Expect = 4.2e-20, P = 4.2e-20
  =>sp|Q27442|H2B_ANOGA HISTONE H2B >gnl|PID|e246061 (X98185) histone H2B
            [Anopheles gambiae]
            Length = 123
	    Score = 245 (86.2 bits), Expect = 4.2e-20, P = 4.2e-20
  =>gi|461149 (M11087) histone H2B-2 [Psammechinus miliaris]
           Length = 103
	    Score = 243 (85.5 bits), Expect = 6.8e-20, P = 6.8e-20
  =>gi|2935450 (AF048824) histone H2B [Malus domestica]
            Length = 93
	    Score = 242 (85.2 bits), Expect = 8.7e-20, P = 8.7e-20
  =>sp|P48989|H2B1_CANAL HISTONE H2B.1
            Length = 91
	    Score = 240 (84.5 bits), Expect = 1.4e-19, P = 1.4e-19
  =>gi|529959 (U12632) histone H2B [Emericella nidulans]
           Length = 136
	    Score = 238 (83.8 bits), Expect = 2.3e-19, P = 2.3e-19
  =>gi|1458314 (U64845) Similar to histone H4 [Caenorhabditis elegans]
            Length = 112
	    Score = 237 (83.4 bits), Expect = 2.9e-19, P = 2.9e-19
  =>gi|161316 (M13635) histone H2b [Lytechinus pictus]
           Length = 85
	    Score = 234 (82.4 bits), Expect = 6.1e-19, P = 6.1e-19
  =>pir||C26399 probable histone H2B - chicken (fragment) >gi|833612 (X05100)
            histone H2B (AA 35 - 126) [Gallus gallus]
            Length = 90
	    Score = 234 (82.4 bits), Expect = 6.1e-19, P = 6.1e-19
  =>gi|1199965 (X95690) Histone H2b homologue [Allium cepa]
            Length = 113
	    Score = 234 (82.4 bits), Expect = 6.1e-19, P = 6.1e-19
  =>bbs|90476 histone H2B [Chlamydomonas reinhardtii, CW-15, Peptide Partial, 92
           aa]
           Length = 92
	    Score = 228 (80.3 bits), Expect = 2.6e-18, P = 2.6e-18
  =>gi|556610 (U14734) histone H2B [Plasmodium falciparum]
           Length = 117
	    Score = 227 (79.9 bits), Expect = 3.4e-18, P = 3.4e-18
  =>pir||S36938 histone H2B - Chlamydomonas sp. (fragments)
            Length = 88
	    Score = 215 (75.7 bits), Expect = 6.3e-17, P = 6.3e-17
  =>gi|17410 (Z18202) HISTONE H2B(2) [Arabidopsis thaliana]
          Length = 123
	    Score = 211 (74.3 bits), Expect = 1.7e-16, P = 1.7e-16
  =>gi|1850595 (U88330) histone H2B [Drosophila virilis] >gi|1850598 (U88331)
            histone H2B [Drosophila virilis]
            Length = 69
	    Score = 210 (73.9 bits), Expect = 2.1e-16, P = 2.1e-16
  =>gi|971775 (F14537) histone H2B [Sus scrofa]
           Length = 69
	    Score = 198 (69.7 bits), Expect = 4.0e-15, P = 4.0e-15
  =>gnl|PID|d1022836 (AB002724) histone H2B [Entamoeba histolytica]
            Length = 130
	    Score = 198 (69.7 bits), Expect = 4.0e-15, P = 4.0e-15
  =>sp|P40284|H2B_ENTIV HISTONE H2B >gi|459760 (L29388) histone H2B [Entamoeba
            invadens]
            Length = 134
	    Score = 197 (69.3 bits), Expect = 5.1e-15, P = 5.1e-15
  =>gnl|PID|d1024859 (AB002280) Histone H2b [Bombyx mori]
            Length = 63
	    Score = 182 (64.1 bits), Expect = 2.0e-13, P = 2.0e-13
  =>gi|1332525 (Z73497) Histone H2B [Homo sapiens]
            Length = 90
	    Score = 134 (47.2 bits), Expect = 6.8e-08, P = 6.8e-08
  =>gi|1881592 (U82927) histone H2b [Drosophila virilis]
            Length = 49
	    Score = 134 (47.2 bits), Expect = 6.8e-08, P = 6.8e-08
  =>gi|161372 (M11089) late histone H2B-2 [Psammechinus miliaris]
           Length = 82
	    Score = 130 (45.8 bits), Expect = 1.9e-07, P = 1.9e-07
  =>pir||S19237 histone H2B (clone pCH22.0B) - chicken (fragment) >gi|404857
            (X07762) histone H2B [Gallus gallus]
            Length = 72
	    Score = 119 (41.9 bits), Expect = 3.2e-06, P = 3.2e-06
  =>sp|P02280|H2B_CRONI HISTONE H2B
            Length = 92
	    Score = 95 (33.4 bits), Expect = 0.0014, P = 0.0014
  =>pir||HSAK22 histone H2B - Nile crocodile (fragments)
            Length = 60
	    Score = 93 (32.7 bits), Expect = 0.0024, P = 0.0024
  =>pir||HSCH22 histone H2B - chicken (fragments)
            Length = 57
	    Score = 89 (31.3 bits), Expect = 0.0066, P = 0.0065
  =>gi|10229 (X00146) pseudohistone H2B part1 [Strongylocentrotus purpuratus]
          Length = 58
	    Score = 81 (28.5 bits), Expect = 0.050, P = 0.048

>CcruzaQ_108 has the following protein neighbors:
Sequence,   
  =>gnl|PID|e1173591 (X96539) malate dehydrogenase [Mesembryanthemum crystallinum]
            Length = 332
	    Score = 465 (163.7 bits), Expect = 2.1e-43, P = 2.1e-43
  =>gi|2286153 (AF007581) cytoplasmic malate dehydrogenase [Zea mays]
            Length = 332
	    Score = 464 (163.3 bits), Expect = 2.6e-43, P = 2.6e-43
  =>gi|2827082 (AF020272) malate dehydrogenase [Medicago sativa]
            Length = 332
	    Score = 450 (158.4 bits), Expect = 8.0e-42, P = 8.0e-42
  =>gi|2341034 (AC000104) F19P19.13 [Arabidopsis thaliana]
            Length = 332
	    Score = 437 (153.8 bits), Expect = 1.9e-40, P = 1.9e-40
  =>sp|P40925|MDHC_HUMAN MALATE DEHYDROGENASE, CYTOPLASMIC >gnl|PID|d1010156
            (D55654) cytosolic malate dehydrogenase [Homo sapiens] >gi|3133269
            (U20352) malate dehydrogenase [Homo sapiens]
            Length = 334
	    Score = 368 (129.5 bits), Expect = 3.9e-33, P = 3.9e-33
  =>pdb|4MDH|A Sus scrofa >pdb|4MDH|B Sus scrofa
            Length = 334
	    Score = 364 (128.1 bits), Expect = 1.0e-32, P = 1.0e-32
  =>pir||A32472 malate dehydrogenase (EC 1.1.1.37), cytosolic - pig
            Length = 333
	    Score = 364 (128.1 bits), Expect = 1.0e-32, P = 1.0e-32
  =>pir||JC4876 malate dehydrogenase (EC 1.1.1.37) - pig >gi|1469402 (U44846)
            cytosolic malate dehydrogenase [Sus scrofa]
            Length = 334
	    Score = 364 (128.1 bits), Expect = 1.0e-32, P = 1.0e-32
  =>sp|P14152|MDHC_MOUSE MALATE DEHYDROGENASE, CYTOPLASMIC >pir||DEMSMC malate
            dehydrogenase (EC 1.1.1.37), cytosolic - mouse >gi|387129 (M36084)
            cytosolic malate dehydrogenase [Mus musculus] >gi|387423 (M29462)
            malate dehydrogenase [Mus musculus]
            Length = 334
	    Score = 361 (127.1 bits), Expect = 2.2e-32, P = 2.2e-32
  =>gi|164543 (M29463) malate dehydrogenase (EC 1.1.1.37) [Sus scrofa]
           Length = 289
	    Score = 360 (126.7 bits), Expect = 2.7e-32, P = 2.7e-32
  =>sp|P11708|MDHC_PIG MALATE DEHYDROGENASE, CYTOPLASMIC
            Length = 333
	    Score = 360 (126.7 bits), Expect = 2.7e-32, P = 2.7e-32
  =>gnl|PID|e1216605 (AL021006) mdh [Mycobacterium tuberculosis] >gi|2708703
            (AF038422) NADH-dependent malate dehydrogenase [Mycobacterium
            bovis]
            Length = 329
	    Score = 350 (123.2 bits), Expect = 3.2e-31, P = 3.2e-31
  =>sp|P50917|MDH_MYCLE MALATE DEHYDROGENASE >gi|699146 (U15180) malate
            dehydrogenase [Mycobacterium leprae]
            Length = 329
	    Score = 334 (117.6 bits), Expect = 1.6e-29, P = 1.6e-29
  =>sp|P10584|MDH_THEFL MALATE DEHYDROGENASE >pir||DETWMA malate dehydrogenase (EC
            1.1.1.37) - Thermus aquaticus >gi|48179 (X54073) malate
            dehydrogenase [Thermus aquaticus flavus] >gi|295401 (J02598) malate
            dehydrogenase (gtg start codon) [Thermus flavus] >gi|581795
            (X56033) malate dehydrogenase [Thermus aquaticus] >prf||1708208B
            succinyl CoA synthetase [Thermus aquaticus] >prf||1712304E malate
            dehydrogenase [Thermus aquaticus flavus]
            Length = 327
	    Score = 320 (112.6 bits), Expect = 4.8e-28, P = 4.8e-28
  =>pdb|1BMD|A Thermus aquaticus flavus >pdb|1BMD|B Thermus aquaticus flavus
            Length = 327
	    Score = 320 (112.6 bits), Expect = 4.8e-28, P = 4.8e-28
  =>pdb|1BDM|A Thermus aquaticus flavus >pdb|1BDM|B Thermus aquaticus flavus
            Length = 327
	    Score = 314 (110.5 bits), Expect = 2.1e-27, P = 2.1e-27
  =>gi|1054961 (U38692) cytosolic malate dehydrogenase [Trichomonas vaginalis]
            >prf||2208292A malate dehydrogenase [Trichomonas vaginalis]
            Length = 332
	    Score = 292 (102.8 bits), Expect = 4.4e-25, P = 4.4e-25
  =>gi|726334 (U22533) NADP-malate dehydrogenase [Flaveria trinervia]
           Length = 416
	    Score = 281 (98.9 bits), Expect = 6.8e-24, P = 6.8e-24
  =>pir||S38347 malate dehydrogenase (NADP+) (EC 1.1.1.82) - garden pea
            Length = 388
	    Score = 279 (98.2 bits), Expect = 1.1e-23, P = 1.1e-23
  =>sp|P46489|MDHC_FLABI MALATE DEHYDROGENASE (NADP), CHLOROPLAST PRECURSOR
            (NADP-MDH) >gi|725262 (L40958) NADP-malate dehydrogenase [Flaveria
            bidentis]
            Length = 453
	    Score = 281 (98.9 bits), Expect = 1.4e-23, P = 1.4e-23
  =>gi|2827076 (AF020269) malate dehydrogenase precursor [Medicago sativa]
            Length = 437
	    Score = 280 (98.6 bits), Expect = 1.4e-23, P = 1.4e-23
  =>sp|P21528|MDHC_PEA MALATE DEHYDROGENASE (NADP), CHLOROPLAST PRECURSOR
            (NADP-MDH) >pir||S38346 malate dehydrogenase (NADP+) (EC 1.1.1.82)
            - garden pea >gi|397475 (X74507) malate dehydrogenase (NADP+)
            [Pisum sativum]
            Length = 441
	    Score = 279 (98.2 bits), Expect = 2.0e-23, P = 2.0e-23
  =>sp|Q04820|MDHC_ECHGR MALATE DEHYDROGENASE, CYTOPLASMIC
            Length = 332
	    Score = 272 (95.7 bits), Expect = 5.8e-23, P = 5.8e-23
  =>gi|3386331 (L08894) malate dehydrogenase [Echinococcus granulosus]
            Length = 332
	    Score = 269 (94.7 bits), Expect = 1.2e-22, P = 1.2e-22
  =>sp|Q05145|MDHC_MESCR MALATE DEHYDROGENASE (NADP), CHLOROPLAST PRECURSOR
            (NADP-MDH) >pir||S33066 malate dehydrogenase (NADP+) (EC 1.1.1.82)
            - common ice plant >gi|19530 (X63727) malate dehydrogenase (NADP+)
            [Mesembryanthemum crystallinum]
            Length = 441
	    Score = 270 (95.0 bits), Expect = 2.1e-22, P = 2.1e-22
  =>sp|P15719|MDHC_MAIZE MALATE DEHYDROGENASE (NADP), CHLOROPLAST PRECURSOR
            (NADP-MDH) >pir||DEMZMC malate dehydrogenase (NADP+) (EC 1.1.1.82)
            precursor, chloroplast - maize >gi|22368 (X16084) precursor protein
            (AA -57 to 375) [Zea mays] >prf||1604473A NADP malate dehydrogenase
            [Zea mays]
            Length = 432
	    Score = 267 (94.0 bits), Expect = 4.1e-22, P = 4.1e-22
  =>sp|P52426|MDHC_SPIOL MALATE DEHYDROGENASE (NADP), CHLOROPLAST PRECURSOR
            (NADP-MDH) >pir||S52268 malate dehydrogenase (NADP+) (EC 1.1.1.82)
            - spinach >gi|642352 (X84020) malate dehydrogenase (NADP+)
            [Spinacia oleracea]
            Length = 435
	    Score = 263 (92.6 bits), Expect = 1.2e-21, P = 1.2e-21
  =>sp|P17606|MDHC_SORVU MALATE DEHYDROGENASE (NADP), CHLOROPLAST 1 PRECURSOR
            (NADP-MDH-1) >pir||JH0151 malate dehydrogenase (NADP+) (EC
            1.1.1.82) precursor, chloroplast - sorghum >gi|170158 (M31965)
            NADP-malate dehydrogenase [Sorghum vulgare]
            Length = 429
	    Score = 262 (92.2 bits), Expect = 1.5e-21, P = 1.5e-21
  =>sp|P19796|MDHC_SORBI MALATE DEHYDROGENASE (NADP), CHLOROPLAST PRECURSOR
            (NADP-MDH) >pir||S13588 malate dehydrogenase (NADP+) (EC 1.1.1.82)
            precursor, chloroplast - sorghum >gi|755781 (X53453) malate
            dehydrogenase (NADP(+)) [Sorghum bicolor]
            Length = 429
	    Score = 262 (92.2 bits), Expect = 1.5e-21, P = 1.5e-21
  =>sp|P37229|MDHD_SORVU MALATE DEHYDROGENASE (NADP), CHLOROPLAST 2 PRECURSOR
            (NADP-MDH-2) >pir||S20743 malate dehydrogenase (NADP+) (EC
            1.1.1.82) - sorghum >gi|14249 (X54404) malate dehydrogenase (NADP+)
            [Sorghum bicolor]
            Length = 432
	    Score = 260 (91.5 bits), Expect = 2.6e-21, P = 2.6e-21
  =>pir||S13587 malate dehydrogenase (NADP+) (EC 1.1.1.82), chloroplast - sorghum
            (fragment) >gi|21182 (X53452) malate dehydrogenase (NADP(+))
            [Sorghum bicolor]
            Length = 272
	    Score = 255 (89.8 bits), Expect = 3.7e-21, P = 3.7e-21
  =>pir||S17781 malate dehydrogenase (NADP+) (EC 1.1.1.82) II - sorghum
            Length = 430
	    Score = 256 (90.1 bits), Expect = 7.1e-21, P = 7.1e-21
  =>bbs|55886 (S55884) NADP-malate dehydrogenase [Sorghum vulgare, Peptide, 435
           aa] [Sorghum bicolor]
           Length = 435
	    Score = 256 (90.1 bits), Expect = 7.5e-21, P = 7.5e-21
  =>gi|3328801 (AE001311) Malate Dehyrogenase [Chlamydia trachomatis]
            Length = 326
	    Score = 218 (76.7 bits), Expect = 3.1e-17, P = 3.1e-17
  =>pir||S13472 malate dehydrogenase (NADP+) (EC 1.1.1.82), chloroplast - garden
            pea
            Length = 377
	    Score = 187 (65.8 bits), Expect = 6.3e-12, P = 6.3e-12
  =>gnl|PID|e249037 (X98357) NADP-malate dehydrogenase [Chlamydomonas reinhardtii]
            Length = 173
	    Score = 117 (41.2 bits), Expect = 8.1e-05, P = 8.1e-05
  =>gi|3328203 (AF075574) cytoplasmic malate dehydrogenase [Rattus norvegicus]
            Length = 34
	    Score = 93 (32.7 bits), Expect = 0.0025, P = 0.0025
  =>bbs|165384 aromatic L-alpha-hydroxyacid dehydrogenase, AHADH [Trypanosoma
            cruzi, Tul O, epimastigotes, Peptide Partial, 17 aa, segment 2 of
            2]
            Length = 17
	    Score = 89 (31.3 bits), Expect = 0.0070, P = 0.0069

>CcruzaQ_93 has the following protein neighbors:
Sequence,   
  =>pir||S61295 heat shock protein 60 - Trypanosoma cruzi >gi|295363 (L08791) heat
            shock protein 60 [Trypanosoma cruzi]
            Length = 562
	    Score = 700 (246.4 bits), Expect = 1.8e-98, Sum P(3) = 1.8e-98
  =>sp|Q95046|CH60_TRYCR MITOCHONDRIAL CHAPERONIN HSP60 PRECURSOR (PROTEIN CPN60)
            (GROEL PROTEIN) (HEAT SHOCK PROTEIN 60) >gnl|PID|e258925 (X67473)
            heat shock protein 60 kDa [Trypanosoma cruzi]
            Length = 562
	    Score = 707 (248.9 bits), Expect = 1.4e-93, Sum P(2) = 1.4e-93
  =>gi|903884 (L43797) heat shock protein 60 [Trypanosoma brucei] >prf||2208423A
           heat shock protein 60kD [Trypanosoma brucei]
           Length = 562
	    Score = 614 (216.1 bits), Expect = 3.1e-87, Sum P(3) = 3.1e-87
  =>sp|Q37683|CH60_TRYBB MITOCHONDRIAL CHAPERONIN HSP60 PRECURSOR (PROTEIN CPN60)
            (GROEL PROTEIN) (HEAT SHOCK PROTEIN 60)
            Length = 563
	    Score = 614 (216.1 bits), Expect = 3.1e-87, Sum P(3) = 3.1e-87
  =>gi|1217626 (X95992) heat shock protein 60 [Euglena gracilis]
            Length = 570
	    Score = 434 (152.8 bits), Expect = 2.2e-62, Sum P(3) = 2.2e-62
  =>sp|Q39727|CH60_EUGGR MITOCHONDRIAL CHAPERONIN HSP60 PRECURSOR (HSP 60)
            >gi|1407631 (U49053) hsp60 [Euglena gracilis]
            Length = 569
	    Score = 434 (152.8 bits), Expect = 2.2e-62, Sum P(3) = 2.2e-62
  =>gi|2924773 (AC002334) putative mitochondrial chaperonin HSP60 precursor
            [Arabidopsis thaliana]
            Length = 524
	    Score = 437 (153.8 bits), Expect = 3.1e-59, Sum P(3) = 3.1e-59
  =>sp|P35480|CH60_BRANA MITOCHONDRIAL CHAPERONIN CPN60 PRECURSOR >pir||S38634
            chaperonin, mitochondrial - rape >gi|415733 (Z27165) mitochondrial
            chaperonin [Brassica napus]
            Length = 587
	    Score = 427 (150.3 bits), Expect = 1.5e-57, Sum P(3) = 1.5e-57
  =>pir||S26583 chaperonin hsp60 - maize >gi|22250 (Z12115) mitochondrial
            chaperonin-60 [Zea mays]
            Length = 576
	    Score = 441 (155.2 bits), Expect = 1.7e-56, Sum P(2) = 1.7e-56
  =>sp|Q43298|CH62_MAIZE MITOCHONDRIAL CHAPERONIN HSP60-2 PRECURSOR >gi|309559
            (L21008) chaperonin 60 [Zea mays] >gi|309561 (L21006) mitochondrial
            chaperonin 60 [Zea mays]
            Length = 576
	    Score = 441 (155.2 bits), Expect = 1.7e-56, Sum P(2) = 1.7e-56
  =>pir||S20875 chaperonin hsp60 precursor - maize >gi|22242 (Z11546) chaperonin
            hsp60 [Zea mays]
            Length = 577
	    Score = 447 (157.4 bits), Expect = 5.9e-56, Sum P(2) = 5.9e-56
  =>pir||S26582 chaperonin hsp60 - maize >gi|22248 (Z12114) mitochondrial
            chaperonin-60 [Zea mays]
            Length = 577
	    Score = 445 (156.6 bits), Expect = 9.5e-56, Sum P(2) = 9.5e-56
  =>sp|P29185|CH61_MAIZE MITOCHONDRIAL CHAPERONIN HSP60-1 PRECURSOR
            Length = 577
	    Score = 445 (156.6 bits), Expect = 9.5e-56, Sum P(2) = 9.5e-56
  =>sp|Q05046|CH62_CUCMA MITOCHONDRIAL CHAPERONIN HSP60-2 PRECURSOR >pir||S29316
            chaperonin 60 - cucurbit >gnl|PID|e1188586 (X70868) chaperonin 60
            [Cucurbita sp.]
            Length = 575
	    Score = 443 (155.9 bits), Expect = 1.5e-55, Sum P(2) = 1.5e-55
  =>gi|309557 (L21007) chaperonin 60 [Zea mays]
           Length = 577
	    Score = 440 (154.9 bits), Expect = 3.2e-55, Sum P(2) = 3.2e-55
  =>sp|Q05045|CH61_CUCMA MITOCHONDRIAL CHAPERONIN HSP60-1 PRECURSOR >pir||S29315
            chaperonin 60 - cucurbit >gnl|PID|e1188585 (X70867) chaperonin 60
            [Cucurbita sp.]
            Length = 575
	    Score = 441 (155.2 bits), Expect = 6.6e-55, Sum P(2) = 6.6e-55
  =>sp|P48220|CH60_ZYMMO 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >gi|496313 (L11654) groEL [Zymomonas mobilis]
            Length = 548
	    Score = 413 (145.4 bits), Expect = 7.7e-55, Sum P(3) = 7.7e-55
  =>pir||JC2564 heat shock protein groEL - Zymomonas mobilis
            Length = 549
	    Score = 413 (145.4 bits), Expect = 7.7e-55, Sum P(3) = 7.7e-55
  =>sp|P50140|CH60_CAEEL CHAPERONIN HOMOLOG HSP60 PRECURSOR (HEAT SHOCK PROTEIN
            60) (HSP-60) >gi|533167 (L36035) homologous to chaperonin protein
            [Caenorhabditis elegans]
            Length = 568
	    Score = 386 (135.9 bits), Expect = 3.6e-54, Sum P(3) = 3.6e-54
  =>gi|3025866 (AF056082) chaperonin 60; cpn60 [Leishmania braziliensis]
            Length = 501
	    Score = 458 (161.2 bits), Expect = 4.6e-54, Sum P(2) = 4.6e-54
  =>gi|2738077 (U87959) heat shock protein 60 [Culicoides variipennis]
            Length = 581
	    Score = 387 (136.2 bits), Expect = 7.3e-54, Sum P(3) = 7.3e-54
  =>sp|P29197|CH60_ARATH MITOCHONDRIAL CHAPERONIN HSP60 PRECURSOR >pir||S20876
            chaperonin hsp60 precursor - Arabidopsis thaliana >gi|16221
            (Z11547) chaperonin hsp60 [Arabidopsis thaliana]
            Length = 577
	    Score = 417 (146.8 bits), Expect = 6.6e-53, Sum P(2) = 6.6e-53
  =>gi|51452 (X53584) HSP60 protein (555 AA) [Mus musculus]
          Length = 555
	    Score = 386 (135.9 bits), Expect = 1.2e-52, Sum P(3) = 1.2e-52
  =>pir||HHRT60 heat shock protein 60 - rat >gnl|PID|e25757 (X53585) HSP60 protein
            (AA 1-547) [Rattus norvegicus]
            Length = 547
	    Score = 386 (135.9 bits), Expect = 1.2e-52, Sum P(3) = 1.2e-52
  =>sp|P35861|CH62_BRAJA 60 KD CHAPERONIN 2 (PROTEIN CPN60 2) (GROEL PROTEIN 2)
            >pir||S35309 heat shock protein groEL2 - Bradyrhizobium japonicum
            >gi|312979 (Z22604) GroEL2 [Bradyrhizobium japonicum]
            Length = 550
	    Score = 397 (139.8 bits), Expect = 2.5e-52, Sum P(3) = 2.5e-52
  =>sp|P35469|CH61_RHIME 60 KD CHAPERONIN A (PROTEIN CPN60 A) (GROEL PROTEIN A)
            >pir||JN0509 heat shock protein groEL (clone Rhz A) - Rhizobium
            meliloti >gi|152235 (M94192) groEL [Rhizobium meliloti]
            Length = 545
	    Score = 387 (136.2 bits), Expect = 3.1e-52, Sum P(3) = 3.1e-52
  =>gi|643068 (U19726) GroEL [Rhizobium meliloti]
           Length = 545
	    Score = 387 (136.2 bits), Expect = 3.1e-52, Sum P(3) = 3.1e-52
  =>pir||A41931 chaperonin hsp60 - mouse >bbs|87915 heat shock protein hsp60,
            hsp60=chaperonin [mice, Peptide, 573 aa]
            Length = 573
	    Score = 386 (135.9 bits), Expect = 3.7e-52, Sum P(3) = 3.7e-52
  =>sp|P18687|P60_CRIGR MITOCHONDRIAL MATRIX PROTEIN P1 PRECURSOR (P60 LYMPHOCYTE
            PROTEIN) (60 KD CHAPERONIN) (HEAT SHOCK PROTEIN 60) (HSP-60)
            (PROTEIN CPN60) (GROEL PROTEIN) >pir||A34173 mitochondrial protein
            P1 precursor - Chinese hamster >gi|304524 (M22383) P1 protein
            precursor [Cricetulus griseus]
            Length = 573
	    Score = 386 (135.9 bits), Expect = 3.7e-52, Sum P(3) = 3.7e-52
  =>gi|1778213 (U68562) chaperonin 60 [Rattus norvegicus]
            Length = 573
	    Score = 386 (135.9 bits), Expect = 3.7e-52, Sum P(3) = 3.7e-52
  =>sp|P19227|P60_RAT MITOCHONDRIAL MATRIX PROTEIN P1 PRECURSOR (P60 LYMPHOCYTE
            PROTEIN) (60 KD CHAPERONIN) (HEAT SHOCK PROTEIN 60) (HSP-60)
            (PROTEIN CPN60) (GROEL PROTEIN) >sp|P19226|P60_MOUSE MITOCHONDRIAL
            MATRIX PROTEIN P1 PRECURSOR (P60 LYMPHOCYTE PROTEIN) (60 KD
            CHAPERONIN) (HEAT SHOCK PROTEIN 60) (HSP-60) (PROTEIN CPN60) (GROEL
            PROTEIN) (HSP-65)
            Length = 573
	    Score = 386 (135.9 bits), Expect = 3.7e-52, Sum P(3) = 3.7e-52
  =>pir||HHMS60 heat shock protein 60 precursor - mouse >gi|51455 (X55023) heat
            shock protein 65 [Mus musculus]
            Length = 573
	    Score = 386 (135.9 bits), Expect = 4.8e-52, Sum P(3) = 4.8e-52
  =>sp|P26878|CH60_LEGPN 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN) (58 KD
            COMMON ANTIGEN) (HEAT SHOCK PROTEIN B) >pir||A41472 heat shock 60K
            protein - Legionella pneumophila >gi|149690 (M91673) 58-kDa common
            antigen [Legionella pneumophila]
            Length = 547
	    Score = 379 (133.4 bits), Expect = 5.1e-52, Sum P(3) = 5.1e-52
  =>gi|149692 (M31918) htpB [Legionella pneumophila]
           Length = 548
	    Score = 379 (133.4 bits), Expect = 5.4e-52, Sum P(3) = 5.4e-52
  =>pir||A41468 60K heat shock protein htpB - Legionella pneumophila
            Length = 550
	    Score = 379 (133.4 bits), Expect = 6.4e-52, Sum P(3) = 6.4e-52
  =>gnl|PID|e276886 (Y09066) 60kDa heat shock protein [Drosophila melanogaster]
            Length = 256
	    Score = 365 (128.5 bits), Expect = 6.5e-52, Sum P(3) = 6.5e-52
  =>pir||S13089 heat shock protein 60 precursor - rat >gi|56383 (X54793) heat
            shock protein (hsp60) precursor [Rattus norvegicus]
            Length = 573
	    Score = 386 (135.9 bits), Expect = 1.2e-51, Sum P(3) = 1.2e-51
  =>pir||I53042 chaperonin (HSP60) - human >gi|306890 (M34664) chaperonin (HSP60)
            [Homo sapiens]
            Length = 573
	    Score = 384 (135.2 bits), Expect = 1.9e-51, Sum P(3) = 1.9e-51
  =>sp|P10809|P60_HUMAN MITOCHONDRIAL MATRIX PROTEIN P1 PRECURSOR (P60 LYMPHOCYTE
            PROTEIN) (60 KD CHAPERONIN) (HEAT SHOCK PROTEIN 60) (HSP-60)
            (PROTEIN CPN60) (GROEL PROTEIN) (HUCHA60) >pir||A32800 heat shock
            protein 60 precursor - human >gi|190127 (M22382) mitochondrial
            matrix protein [Homo sapiens]
            Length = 573
	    Score = 384 (135.2 bits), Expect = 1.9e-51, Sum P(3) = 1.9e-51
  =>gi|2358234 (U78514) heat shock protein HSP60 [Bartonella henselae]
            Length = 547
	    Score = 388 (136.6 bits), Expect = 2.4e-50, Sum P(3) = 2.4e-50
  =>gi|2358236 (U78515) heat shock protein HSP60 [Bartonella quintana]
            Length = 547
	    Score = 385 (135.5 bits), Expect = 3.9e-50, Sum P(3) = 3.9e-50
  =>pir||B43827 heat shock protein groEL - Brucella abortus (strain S19)
            >gi|144108 (M83930) heat shock protein [Brucella abortus]
            Length = 544
	    Score = 380 (133.8 bits), Expect = 3.9e-50, Sum P(3) = 3.9e-50
  =>sp|P25967|CH60_BRUAB 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||S22347 groEL - Brucella abortus >gi|144111 (M82975) putative
            [Brucella abortus]
            Length = 546
	    Score = 380 (133.8 bits), Expect = 3.9e-50, Sum P(3) = 3.9e-50
  =>pir||I40342 heat shock protein - Brucella abortus >gi|144113 (L09273) heat
            shock protein [Brucella abortus]
            Length = 546
	    Score = 380 (133.8 bits), Expect = 3.9e-50, Sum P(3) = 3.9e-50
  =>gi|3088571 (AF059523) heat shock protein 60 [Paracoccidioides brasiliensis]
            Length = 592
	    Score = 375 (132.0 bits), Expect = 4.1e-50, Sum P(3) = 4.1e-50
  =>sp|O02649|CH61_DROME MITOCHONDRIAL MATRIX PROTEIN P1 PRECURSOR (60 KD
            CHAPERONIN) (HEAT SHOCK PROTEIN 60) (HSP-60) (PROTEIN CPN60) (GROEL
            PROTEIN) >gnl|PID|e254159 (X99341) heat shock protein 60
            [Drosophila melanogaster]
            Length = 576
	    Score = 355 (125.0 bits), Expect = 5.9e-50, Sum P(3) = 5.9e-50
  =>sp|P48210|CH60_BORPE 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||I40331 Cpn60 protein (GroEL) - Bordetella pertussis
            >gi|968920 (U12277) Cpn60 (GroEL) [Bordetella pertussis]
            Length = 547
	    Score = 378 (133.1 bits), Expect = 8.4e-50, Sum P(3) = 8.4e-50
  =>sp|P77829|CH61_BRAJA 60 KD CHAPERONIN 1 (PROTEIN CPN60 1) (GROEL PROTEIN 1)
            >gi|1613782 (U55047) heat shock protein GroEL [Bradyrhizobium
            japonicum]
            Length = 540
	    Score = 402 (141.5 bits), Expect = 9.5e-50, Sum P(2) = 9.5e-50
  =>sp|P35862|CH63_BRAJA 60 KD CHAPERONIN 3 (PROTEIN CPN60 3) (GROEL PROTEIN 3)
            >pir||S35311 heat shock cognate protein groEL3 - Bradyrhizobium
            japonicum >gi|312976 (Z22603) GroEL3 [Bradyrhizobium japonicum]
            Length = 546
	    Score = 405 (142.6 bits), Expect = 8.4e-49, Sum P(2) = 8.4e-49
  =>sp|Q94596|CH60_LEIMA MITOCHONDRIAL CHAPERONIN HSP60 PRECURSOR (PROTEIN CPN60)
            (GROEL PROTEIN) (HEAT SHOCK PROTEIN 60) >gi|1655822 (U59320) heat
            shock protein 60 [Leishmania major]
            Length = 589
	    Score = 402 (141.5 bits), Expect = 1.5e-48, Sum P(2) = 1.5e-48
  =>gi|2281438 (U88092) GroEL [Ehrlichia sennetsu]
            Length = 548
	    Score = 355 (125.0 bits), Expect = 1.6e-48, Sum P(3) = 1.6e-48
  =>gi|2984379 (AE000777) GroEL [Aquifex aeolicus]
            Length = 545
	    Score = 376 (132.4 bits), Expect = 2.4e-48, Sum P(2) = 2.4e-48
  =>sp|P34939|CH60_RHILV 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||S65596 heat shock protein 60 - Rhizobium leguminosarum
            >gi|387874 (L20775) chaperonin 60 [Rhizobium leguminosarum]
            Length = 546
	    Score = 361 (127.1 bits), Expect = 3.2e-48, Sum P(3) = 3.2e-48
  =>gi|1297293 (U38963) 60 kDa heat-shock protein PfHsp60 [Plasmodium falciparum]
            >gi|2340158 (U94594) hsp60 [Plasmodium falciparum]
            Length = 577
	    Score = 392 (138.0 bits), Expect = 8.3e-48, Sum P(2) = 8.3e-48
  =>sp|P48214|CH60_EHRRI 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN) (55 KD
            MAJOR ANTIGEN) >gi|790344 (U24396) heat-shock protein [Ehrlichia
            risticii]
            Length = 510
	    Score = 342 (120.4 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
  =>sp|P20110|CH61_RHOSH 60 KD CHAPERONIN 1 (PROTEIN CPN60 1) (GROEL PROTEIN 1)
            >gi|1208543 (U37369) chaperonin 60 [Rhodobacter sphaeroides]
            Length = 547
	    Score = 373 (131.3 bits), Expect = 2.9e-47, Sum P(2) = 2.9e-47
  =>pir||S36237 heat shock protein 60 - Helicobacter pylori >gi|397869 (X73840)
            heat shock protein 60 [Helicobacter pylori]
            Length = 546
	    Score = 338 (119.0 bits), Expect = 6.3e-47, Sum P(3) = 6.3e-47
  =>gi|1621639 (U72247) chaperonin 60 [Dictyostelium discoideum]
            Length = 556
	    Score = 377 (132.7 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
  =>gi|143846 (M98257) immunoreactive protein [Bartonella bacilliformis]
           Length = 544
	    Score = 398 (140.1 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
  =>gi|1755053 (U57000) chaperonin 60 [Trichomonas vaginalis]
            Length = 544
	    Score = 385 (135.5 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
  =>sp|P19882|HS60_YEAST HEAT SHOCK PROTEIN 60 PRECURSOR (STIMULATOR FACTOR I 66
            KD COMPONENT) (P66) (CPN60) >pir||JQ0157 heat shock protein HSP60
            precursor, mitochondrial - yeast (Saccharomyces cerevisiae)
            >gi|171720 (M33301) heat shock protein 60 (HSP60) [Saccharomyces
            cerevisiae] >gi|577181 (U17244) Hsp60p: Heat shock protein 60
            [Saccharomyces cerevisiae] >prf||1504305A mitochondrial assembly
            factor [Saccharomyces cerevisiae]
            Length = 572
	    Score = 389 (136.9 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
  =>gi|1732039 (U55016) heat-shock 60 protein GroEL [Actinobacillus
            pleuropneumoniae]
            Length = 547
	    Score = 351 (123.6 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
  =>pir||S70667 heat shock protein groEL - Caulobacter crescentus
            Length = 544
	    Score = 385 (135.5 bits), Expect = 2.2e-46, Sum P(2) = 2.2e-46
  =>sp|P48211|CH60_CAUCR 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >gi|1663718 (L41394) heat shock protein [Caulobacter crescentus]
            Length = 545
	    Score = 385 (135.5 bits), Expect = 2.2e-46, Sum P(2) = 2.2e-46
  =>sp|P48213|CH60_COWRU 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >gi|608028 (U13638) HSP-60 [Cowdria ruminantium]
            Length = 551
	    Score = 353 (124.3 bits), Expect = 2.5e-46, Sum P(3) = 2.5e-46
  =>gnl|PID|d1020311 (AB002286) similar to GroEL protein [Wolbachia sp.]
            Length = 552
	    Score = 356 (125.3 bits), Expect = 2.8e-46, Sum P(3) = 2.8e-46
  =>pir||S61397 heat shock protein hspB - Helicobacter pylori >gi|712831 (L23798)
            heat shock protein [Helicobacter pylori]
            Length = 545
	    Score = 337 (118.6 bits), Expect = 4.5e-46, Sum P(3) = 4.5e-46
  =>pir||S37039 groEL protein - Bartonella bacilliformis >gi|397596 (Z15160) GroEL
            [Bartonella bacilliformis]
            Length = 544
	    Score = 393 (138.3 bits), Expect = 4.5e-46, Sum P(2) = 4.5e-46
  =>sp|P35635|CH60_BARBA 60 KD CHAPERONIN (PROTEIN CPN60) (IMMUNOREACTIVE PROTEIN
            BB65) (IMMUNOREACTIVE PROTEIN BB63) (HEAT SHOCK PROTEIN 60) (HSP
            60)
            Length = 543
	    Score = 393 (138.3 bits), Expect = 4.5e-46, Sum P(2) = 4.5e-46
  =>pir||S47530 groEL protein - Porphyromonas gingivalis >gnl|PID|d1004680
            (D17342) GroEL [Porphyromonas gingivalis] >prf||2019245B groEL-like
            protein [Porphyromonas gingivalis]
            Length = 545
	    Score = 383 (134.8 bits), Expect = 4.5e-46, Sum P(2) = 4.5e-46
  =>sp|P42383|CH60_HELPY 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN) (HEAT
            SHOCK PROTEIN 60) >gi|2313084 (AE000523) chaperone and heat shock
            protein (groEL) [Helicobacter pylori]
            Length = 546
	    Score = 337 (118.6 bits), Expect = 4.6e-46, Sum P(3) = 4.6e-46
  =>gi|3002494 (U81143) heat shock protein [Klebsiella pneumoniae]
            Length = 547
	    Score = 336 (118.3 bits), Expect = 6.3e-46, Sum P(3) = 6.3e-46
  =>sp|P35471|CH63_RHIME 60 KD CHAPERONIN C (PROTEIN CPN60 C) (GROEL PROTEIN C)
            >pir||JN0512 heat shock protein groEL (clone Rhz C) - Rhizobium
            meliloti >gi|152238 (M94191) groEL [Rhizobium meliloti]
            Length = 541
	    Score = 384 (135.2 bits), Expect = 7.3e-46, Sum P(2) = 7.3e-46
  =>sp|P29842|CH60_NEIGO 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN) (63 KD
            STRESS PROTEIN) (GSP63) >pir||S61300 heat shock protein 63a -
            Neisseria gonorrhoeae (fragment) >gi|438185 (Z23008) heat-shock
            protein [Neisseria gonorrhoeae]
            Length = 544
	    Score = 364 (128.1 bits), Expect = 1.2e-45, Sum P(3) = 1.2e-45
  =>gnl|PID|d1014748 (D89970) GroEL [Holospora obtusa]
            Length = 554
	    Score = 380 (133.8 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
  =>sp|P48217|CH60_SALTI 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >gi|499206 (U01039) GroEL [Salmonella typhi]
            Length = 548
	    Score = 332 (116.9 bits), Expect = 1.6e-45, Sum P(3) = 1.6e-45
  =>sp|P31293|CH60_CHRVI 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||B47073 chaperonin GroEL - Chromatium vinosum >gi|145009
            (M99443) groEL [Chromatium vinosum]
            Length = 546
	    Score = 346 (121.8 bits), Expect = 1.6e-45, Sum P(3) = 1.6e-45
  =>sp|P43733|CH60_HAEIN 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||C64076 heat shock protein (groEL) (mopA) homolog -
            Haemophilus influenzae (strain Rd KW20) >gi|1573528 (U32736) heat
            shock protein (groEL) [Haemophilus influenzae Rd]
            Length = 548
	    Score = 345 (121.4 bits), Expect = 1.8e-45, Sum P(3) = 1.8e-45
  =>sp|P95647|CH62_RHOSH 60 KD CHAPERONIN 2 (PROTEIN CPN60 2) (GROEL PROTEIN 2)
            >gi|1805257 (U66831) chaperonin 60 [Rhodobacter sphaeroides]
            Length = 541
	    Score = 386 (135.9 bits), Expect = 3.1e-45, Sum P(2) = 3.1e-45
  =>gi|576779 (U17072) GroEL [Pseudomonas aeruginosa]
           Length = 547
	    Score = 354 (124.6 bits), Expect = 4.5e-45, Sum P(3) = 4.5e-45
  =>pdb|1OEL|A Escherichia coli >pdb|1OEL|B Escherichia coli >pdb|1OEL|C
            Escherichia coli >pdb|1OEL|D Escherichia coli >pdb|1OEL|E
            Escherichia coli >pdb|1OEL|F Escherichia coli >pdb|1OEL|G
            Escherichia coli
            Length = 547
	    Score = 334 (117.6 bits), Expect = 6.0e-45, Sum P(3) = 6.0e-45
  =>pdb|1DER|A Escherichia coli >pdb|1DER|B Escherichia coli >pdb|1DER|C
            Escherichia coli >pdb|1DER|D Escherichia coli >pdb|1DER|E
            Escherichia coli >pdb|1DER|F Escherichia coli >pdb|1DER|G
            Escherichia coli >pdb|1DER|H Escherichia coli >pdb|1DER|I
            Escherichia coli >pdb|1DER|J Escherichia coli >pdb|1DER|K
            Escherichia coli >pdb|1DER|L Escherichia coli >pdb|1DER|M
            Escherichia coli >pdb|1DER|N Escherichia coli
            Length = 547
	    Score = 334 (117.6 bits), Expect = 6.0e-45, Sum P(3) = 6.0e-45
  =>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
            GroelGROES(ADP)7 Complex (GroelGROES), CHAPERONIN ASSISTED PROTEIN
            FOLDING Mol_id: 1; Molecule: Groel; Chain: A, B, C, D, E, F, G, H,
            I, J, K, L, M, N; Synonym: 60 Kd... >pdb|1AON|B Chain B, Crystal
            Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7
            Complex (GroelGROES), CHAPERONIN ASSISTED PROTEIN FOLDING Mol_id:
            1; Molecule: Groel; Chain: A, B, C, D, E, F, G, H, I, J, K, L, M,
            N; Synonym: 60 Kd... >pdb|1AON|C Chain C, Crystal Structure Of The
            Asymmetric Chaperonin Complex GroelGROES(ADP)7 Complex
            (GroelGROES), CHAPERONIN ASSISTED PROTEIN FOLDING Mol_id: 1;
            Molecule: Groel; Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N;
            Synonym: 60 Kd... >pdb|1AON|D Chain D, Crystal Structure Of The
            Asymmetric Chaperonin Complex GroelGROES(ADP)7 Complex
            (GroelGROES), CHAPERONIN ASSISTED PROTEIN FOLDING Mol_id: 1;
            Molecule: Groel; Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N;
            Synonym: 60 Kd... >pdb|1AON|E Chain E, Crystal Structure Of The
            Asymmetric Chaperonin Complex GroelGROES(ADP)7 Complex
            (GroelGROES), CHAPERONIN ASSISTED PROTEIN FOLDING Mol_id: 1;
            Molecule: Groel; Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N;
            Synonym: 60 Kd... >pdb|1AON|F Chain F, Crystal Structure Of The
            Asymmetric Chaperonin Complex GroelGROES(ADP)7 Complex
            (GroelGROES), CHAPERONIN ASSISTED PROTEIN FOLDING Mol_id: 1;
            Molecule: Groel; Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N;
            Synonym: 60 Kd... >pdb|1AON|G Chain G, Crystal Structure Of The
            Asymmetric Chaperonin Complex GroelGROES(ADP)7 Complex
            (GroelGROES), CHAPERONIN ASSISTED PROTEIN FOLDING Mol_id: 1;
            Molecule: Groel; Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N;
            Synonym: 60 Kd... >pdb|1AON|H Chain H, Crystal Structure Of The
            Asymmetric Chaperonin Complex GroelGROES(ADP)7 Complex
            (GroelGROES), CHAPERONIN ASSISTED PROTEIN FOLDING Mol_id: 1;
            Molecule: Groel; Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N;
            Synonym: 60 Kd... >pdb|1AON|I Chain I, Crystal Structure Of The
            Asymmetric Chaperonin Complex GroelGROES(ADP)7 Complex
            (GroelGROES), CHAPERONIN ASSISTED PROTEIN FOLDING Mol_id: 1;
            Molecule: Groel; Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N;
            Synonym: 60 Kd... >pdb|1AON|J Chain J, Crystal Structure Of The
            Asymmetric Chaperonin Complex GroelGROES(ADP)7 Complex
            (GroelGROES), CHAPERONIN ASSISTED PROTEIN FOLDING Mol_id: 1;
            Molecule: Groel; Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N;
            Synonym: 60 Kd... >pdb|1AON|K Chain K, Crystal Structure Of The
            Asymmetric Chaperonin Complex GroelGROES(ADP)7 Complex
            (GroelGROES), CHAPERONIN ASSISTED PROTEIN FOLDING Mol_id: 1;
            Molecule: Groel; Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N;
            Synonym: 60 Kd... >pdb|1AON|L Chain L, Crystal Structure Of The
            Asymmetric Chaperonin Complex GroelGROES(ADP)7 Complex
            (GroelGROES), CHAPERONIN ASSISTED PROTEIN FOLDING Mol_id: 1;
            Molecule: Groel; Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N;
            Synonym: 60 Kd... >pdb|1AON|M Chain M, Crystal Structure Of The
            Asymmetric Chaperonin Complex GroelGROES(ADP)7 Complex
            (GroelGROES), CHAPERONIN ASSISTED PROTEIN FOLDING Mol_id: 1;
            Molecule: Groel; Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N;
            Synonym: 60 Kd... >pdb|1AON|N Chain N, Crystal Structure Of The
            Asymmetric Chaperonin Complex GroelGROES(ADP)7 Complex
            (GroelGROES), CHAPERONIN ASSISTED PROTEIN FOLDING Mol_id: 1;
            Molecule: Groel; Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N;
            Synonym: 60 Kd...
            Length = 547
	    Score = 334 (117.6 bits), Expect = 6.0e-45, Sum P(3) = 6.0e-45
  =>pir||S56371 GroEL protein - Escherichia coli >gi|536987 (U14003) GroEL protein
            [Escherichia coli] >gi|1790586 (AE000487) GroEL protein
            [Escherichia coli]
            Length = 548
	    Score = 334 (117.6 bits), Expect = 6.2e-45, Sum P(3) = 6.2e-45
  =>sp|P06139|CH60_ECOLI 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN) (AMS)
            >pir||BVECGL heat shock protein groEL - Escherichia coli >gi|41617
            (X07850) groEL protein (AA 1-548) [Escherichia coli] >prf||1407243B
            groEL gene [Escherichia coli]
            Length = 548
	    Score = 334 (117.6 bits), Expect = 6.2e-45, Sum P(3) = 6.2e-45
  =>pdb|1GRL|  Mol_id: 1; Molecule: Groel (Hsp60 Class); Chain: Null; Engineered:
            Yes; Mutation: R13g, A126v
            Length = 548
	    Score = 334 (117.6 bits), Expect = 6.2e-45, Sum P(3) = 6.2e-45
  =>pir||B43606 heat shock protein groEL - Pseudomonas aeruginosa >gi|151243
            (M63957) heat shock protein [Pseudomonas aeruginosa]
            Length = 547
	    Score = 352 (123.9 bits), Expect = 8.0e-45, Sum P(3) = 8.0e-45
  =>sp|P30718|CH60_PSEAE 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >bbs|165283 (S77424) GroEL, Hsp60-65=57 kda heat shock protein
            [Pseudomonas aeruginosa, P1118, O:3, Peptide, 547 aa] [Pseudomonas
            aeruginosa]
            Length = 547
	    Score = 352 (123.9 bits), Expect = 8.0e-45, Sum P(3) = 8.0e-45
  =>gnl|PID|e300609 (Y09416) heat shock protein 60 [Onchocerca volvulus]
            Length = 550
	    Score = 363 (127.8 bits), Expect = 9.1e-45, Sum P(2) = 9.1e-45
  =>sp|P25420|CH63_HELVI 63 KD CHAPERONIN PRECURSOR (P63) >pir||S11035 chaperonin
            hsp60, testis - tobacco budworm >gi|296832 (X56034) chaperonin
            isoform [Heliothis virescens]
            Length = 569
	    Score = 351 (123.6 bits), Expect = 9.1e-45, Sum P(2) = 9.1e-45
  =>sp|P26004|CH60_AMOPS 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||JC2562 chaperonin groELx protein - Amoeba proteus >gi|155402
            (M86549) groEL [Amoeba proteus symbiotic bacterium]
            Length = 551
	    Score = 367 (129.2 bits), Expect = 1.0e-44, Sum P(2) = 1.0e-44
  =>sp|P35470|CH62_RHIME 60 KD CHAPERONIN B (PROTEIN CPN60 B) (GROEL PROTEIN B)
            >pir||JN0511 heat shock protein groEL (clone Rhz B) - Rhizobium
            meliloti >gi|152232 (M94190) groEL [Rhizobium meliloti]
            Length = 541
	    Score = 373 (131.3 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
  =>sp|Q59687|CH60_PASMU 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||JC4519 heat-shock protein GroEL - Pasteurella multocida
            >gi|1144302 (U30165) GroEL [Pasteurella multocida]
            Length = 547
	    Score = 335 (117.9 bits), Expect = 1.5e-44, Sum P(3) = 1.5e-44
  =>sp|P42382|CH60_EHRCH 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||S61297 GroEL heat-shock protein homolog - Ehrlichia
            chaffeensis >gi|148289 (L10917) heat-shock protein [Ehrlichia
            chaffeensis]
            Length = 550
	    Score = 336 (118.3 bits), Expect = 2.0e-44, Sum P(3) = 2.0e-44
  =>gnl|PID|e1287421 (Y13334) heat shock protein [Campylobacter jejuni]
            Length = 545
	    Score = 318 (111.9 bits), Expect = 2.7e-44, Sum P(3) = 2.7e-44
  =>sp|Q60024|CH60_THEBR 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||S72614 chaperonin 60 - Thermoanaerobacter brockii >gi|1326191
            (U56021) chaperonin 60 [Thermoanaerobacter brockii]
            Length = 541
	    Score = 354 (124.6 bits), Expect = 9.2e-44, Sum P(2) = 9.2e-44
  =>gi|3252985 (AF071193) 60 kDa heat shock protein [Bartonella sp. NVH1]
            Length = 450
	    Score = 389 (136.9 bits), Expect = 9.3e-44, Sum P(2) = 9.3e-44
  =>sp|P30779|CH60_AGRTU 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||S23918 groEL protein - Agrobacterium tumefaciens >gi|39095
            (X68263) pid:g39095 [Agrobacterium tumefaciens]
            Length = 544
	    Score = 368 (129.5 bits), Expect = 1.3e-43, Sum P(2) = 1.3e-43
  =>sp|P31294|CH60_HAEDU 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||B49203 heat shock protein GroEL - Haemophilus ducreyi
            >gi|148892 (M91030) heat shock protein [Haemophilus ducreyi]
            Length = 547
	    Score = 331 (116.5 bits), Expect = 2.0e-43, Sum P(3) = 2.0e-43
  =>gi|3252987 (AF071194) 60 kDa heat shock protein [Bartonella sp. FC7049UT]
            Length = 436
	    Score = 393 (138.3 bits), Expect = 4.0e-43, Sum P(2) = 4.0e-43
  =>sp|P95678|CH60_RHOCA 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >bbs|178737 (S82593) Cpn60=57.7 kda GroEL subunit [Rhodobacter
            capsulatus, B10, ATCC 33303, Peptide, 545 aa] [Rhodobacter
            capsulatus]
            Length = 545
	    Score = 365 (128.5 bits), Expect = 4.3e-43, Sum P(2) = 4.3e-43
  =>gnl|PID|d1026139 (AB008139) similar to GroEL protein [Enterobacter gergoviae]
            Length = 540
	    Score = 331 (116.5 bits), Expect = 5.2e-43, Sum P(3) = 5.2e-43
  =>sp|P42375|CH60_PORGI 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >gnl|PID|d1004741 (D17398) heat shock protein 60 (GroEL) like
            protein [Porphyromonas gingivalis] >prf||2014258B heat shock
            protein 60 [Porphyromonas gingivalis]
            Length = 545
	    Score = 359 (126.4 bits), Expect = 5.8e-43, Sum P(2) = 5.8e-43
  =>sp|Q09864|HS60_SCHPO HEAT SHOCK PROTEIN 60 PRECURSOR (HSP60) >pir||S62535
            hypothetical protein SPAC12G12.04 - fission yeast
            (Schizosaccharomyces pombe) >gi|1052522 (Z66568) unknown
            [Schizosaccharomyces pombe]
            Length = 582
	    Score = 346 (121.8 bits), Expect = 6.3e-43, Sum P(2) = 6.3e-43
  =>pir||B39025 chaperonin 60 - Synechocystis sp. (PCC 6803) >gi|154465 (M57517)
            chaperonin 60 [Synechocystis sp.]
            Length = 551
	    Score = 324 (114.1 bits), Expect = 7.4e-43, Sum P(3) = 7.4e-43
  =>sp|P22034|CH62_SYNY3 60 KD CHAPERONIN 2 (PROTEIN CPN60 2) (GROEL HOMOLOG 2)
            >gnl|PID|d1010891 (D64001) 60kD chaperonin 2 [Synechocystis sp.]
            Length = 552
	    Score = 323 (113.7 bits), Expect = 8.0e-43, Sum P(3) = 8.0e-43
  =>pir||S26423 heat shock protein 60 - Yersinia enterocolitica >gi|48572 (X68526)
            heat shock protein 60 [Yersinia enterocolitica]
            Length = 550
	    Score = 331 (116.5 bits), Expect = 9.0e-43, Sum P(3) = 9.0e-43
  =>sp|P48219|CH60_YEREN 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN) (HEAT
            SHOCK PROTEIN 60) (CROSS-REACTING PROTEIN ANTIGEN)
            Length = 550
	    Score = 331 (116.5 bits), Expect = 9.0e-43, Sum P(3) = 9.0e-43
  =>pir||JC6063 molecular chaperone 60 GroEL - Bacillus sp
            Length = 544
	    Score = 320 (112.6 bits), Expect = 1.9e-42, Sum P(3) = 1.9e-42
  =>sp|P28598|CH60_BACSU 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||B41884 58K heat shock protein GroEL - Bacillus subtilis
            >gi|143027 (M81132) heat shock protein [Bacillus subtilis]
            >gi|143063 (M84965) heat shock protein [Bacillus subtilis]
            >dbj||AB007637_2 (AB007637) chaperonin [Bacillus subtilis]
            >gnl|PID|e1182582 (Z99107) class I heat-shock protein (molecular
            chaperonin) [Bacillus subtilis]
            Length = 544
	    Score = 316 (111.2 bits), Expect = 2.7e-42, Sum P(3) = 2.7e-42
  =>sp|P46398|CH60_ACTAC 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >gnl|PID|d1006528 (D28817) 64-kDa heat shock protein
            [Actinobacillus actinomycetemcomitans]
            Length = 547
	    Score = 327 (115.1 bits), Expect = 3.2e-42, Sum P(3) = 3.2e-42
  =>pir||B36917 heat shock protein GroEL - Agrobacterium tumefaciens
            Length = 544
	    Score = 357 (125.7 bits), Expect = 3.3e-42, Sum P(2) = 3.3e-42
  =>gnl|PID|d1026165 (AB008152) similar to GroEL protein [Erwinia carotovora]
            Length = 540
	    Score = 325 (114.4 bits), Expect = 4.6e-42, Sum P(3) = 4.6e-42
  =>gi|1277173 (U52049) GroEL [Chlamydia trachomatis]
            Length = 544
	    Score = 334 (117.6 bits), Expect = 6.0e-42, Sum P(2) = 6.0e-42
  =>sp|P48212|CH60_CLOTM 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN) (HSP-60)
            >pir||S68249 chaperone GroEL homolog Cpn60 - Clostridium
            thermocellum >gnl|PID|e212242 (Z68137) groEL [Clostridium
            thermocellum]
            Length = 541
	    Score = 330 (116.2 bits), Expect = 6.3e-42, Sum P(2) = 6.3e-42
  =>pir||S61301 heat shock protein 63b - Neisseria gonorrhoeae (fragment)
            >gi|438187 (Z23009) heat-shock protein [Neisseria gonorrhoeae]
            Length = 541
	    Score = 367 (129.2 bits), Expect = 9.4e-42, Sum P(2) = 9.4e-42
  =>sp|P35468|CH60_LEPIN 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN) (HEAT
            SHOCK 58 KD PROTEIN) >pir||S34938 heat shock protein 58 -
            Leptospira interrogans >gi|293071 (L14682) heat shock protein
            [Leptospira interrogans]
            Length = 546
	    Score = 322 (113.3 bits), Expect = 9.8e-42, Sum P(3) = 9.8e-42
  =>gi|2642332 (AF032910) heat shock protein 58 [Leptospira interrogans]
            Length = 546
	    Score = 322 (113.3 bits), Expect = 9.8e-42, Sum P(3) = 9.8e-42
  =>prf||1906220B groEL gene [Bacillus subtilis]
            Length = 544
	    Score = 311 (109.5 bits), Expect = 1.1e-41, Sum P(3) = 1.1e-41
  =>sp|P15599|CH60_CHLPS 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN) (57 KD
            CHLAMYDIAL HYPERSENSITIVITY ANTIGEN) >pir||JL0117 hypB protein -
            Chlamydia psittaci >gi|40579 (X51404) hypB 58.1 kD protein (AA
            1-544) [Chlamydia psittaci]
            Length = 544
	    Score = 331 (116.5 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
  =>bbs|109223 (S40172) HypB=chaperonin homolog [Chlamydia psittaci, pigeon strain
            P-1041, Peptide Partial, 417 aa] [Chlamydia psittaci]
            Length = 417
	    Score = 325 (114.4 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
  =>gnl|PID|d1013769 (D86384) chaperonin like protein [Synechococcus vulcanus]
            Length = 543
	    Score = 318 (111.9 bits), Expect = 2.1e-41, Sum P(3) = 2.1e-41
  =>gnl|PID|e1154261 (Y13828) Hsp60 protein [Pseudomonas stutzeri]
            Length = 552
	    Score = 354 (124.6 bits), Expect = 2.6e-41, Sum P(2) = 2.6e-41
  =>sp|P16625|CH60_RICTS 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN) (MAJOR
            ANTIGEN 58) (58 KD ANTIGEN) >pir||B41492 58K antigen - Rickettsia
            tsutsugamushi >gi|152503 (M31887) major antigen 58 [Rickettsia
            tsutsugamushi]
            Length = 555
	    Score = 355 (125.0 bits), Expect = 2.7e-41, Sum P(2) = 2.7e-41
  =>pir||S52901 heat shock protein 60K - Yersinia enterocolitica >gi|695776
            (X82212) 60 kDa Heat Shock Protein [Yersinia enterocolitica]
            Length = 550
	    Score = 327 (115.1 bits), Expect = 3.0e-41, Sum P(3) = 3.0e-41
  =>sp|P17203|CH60_CHLTR 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN) (57 KD
            CHLAMYDIAL HYPERSENSITIVITY ANTIGEN) (HSP60) >pir||B41479 stress
            response protein HypB - Chlamydia trachomatis >gi|144522 (M31739)
            hypB protein [Chlamydia trachomatis]
            Length = 544
	    Score = 328 (115.5 bits), Expect = 3.0e-41, Sum P(2) = 3.0e-41
  =>pir||I40731 heat shock protein - Chlamydia trachomatis >gi|402333 (L12004)
            heat shock protein [Chlamydia trachomatis]
            Length = 544
	    Score = 328 (115.5 bits), Expect = 3.0e-41, Sum P(2) = 3.0e-41
  =>pir||A60273 60K heat shock protein groEL - Chlamydia trachomatis >gi|144505
            (M58027) groE [Chlamydia trachomatis]
            Length = 544
	    Score = 328 (115.5 bits), Expect = 3.0e-41, Sum P(2) = 3.0e-41
  =>gi|3328508 (AE001285) HSP-60 [Chlamydia trachomatis]
            Length = 544
	    Score = 328 (115.5 bits), Expect = 3.0e-41, Sum P(2) = 3.0e-41
  =>gnl|PID|d1003671 (D14078) Yersinia enterocolitica hsp60, cross-reacting
            protein antigen [Yersinia enterocolitica]
            Length = 549
	    Score = 318 (111.9 bits), Expect = 3.1e-41, Sum P(3) = 3.1e-41
  =>gnl|PID|d1009809 (D50609) heat-shock protein (HSP60) [Schizosaccharomyces
            pombe]
            Length = 582
	    Score = 331 (116.5 bits), Expect = 3.4e-41, Sum P(2) = 3.4e-41
  =>gnl|PID|d1026161 (AB008150) similar to GroEL protein [Erwinia herbicola]
            Length = 541
	    Score = 322 (113.3 bits), Expect = 3.6e-41, Sum P(3) = 3.6e-41
  =>sp|P48215|CH60_NEIFL 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN) (63 KD
            STRESS PROTEIN) (GSP63) >pir||S61302 heat shock protein 63 -
            Neisseria flavescens (fragment) >gi|438183 (Z22955) heat-shock
            protein [Neisseria flavescens]
            Length = 544
	    Score = 357 (125.7 bits), Expect = 3.8e-41, Sum P(2) = 3.8e-41
  =>sp|P25750|CH60_ACYPS 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            (SYMBIONIN) >pir||B42281 symbionin - pea aphid >pir||S70753
            symbionin symL - pea aphid >gi|5660 (X61150) symbionin
            [Acyrthosiphon pisum]
            Length = 548
	    Score = 313 (110.2 bits), Expect = 4.6e-41, Sum P(3) = 4.6e-41
  =>gi|2754808 (AF003957) SymL [Myzus persicae primary endosymbiont]
            Length = 548
	    Score = 313 (110.2 bits), Expect = 4.6e-41, Sum P(3) = 4.6e-41
  =>gnl|PID|d1026157 (AB008148) similar to GroEL protein [Klebsiella planticola]
            Length = 540
	    Score = 335 (117.9 bits), Expect = 5.9e-41, Sum P(2) = 5.9e-41
  =>gi|3093750 (AF031929) chaperonin GroEL [Lactobacillus helveticus]
            Length = 540
	    Score = 331 (116.5 bits), Expect = 8.6e-41, Sum P(2) = 8.6e-41
  =>gi|1813561 (U72628) heat shock protein 60 [Ehrlichia sp. 'HGE agent']
            >gi|2290600 (U96727) GroEL [Ehrlichia equi]
            Length = 541
	    Score = 342 (120.4 bits), Expect = 1.0e-40, Sum P(2) = 1.0e-40
  =>sp|P19421|CH60_COXBU 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN) (HEAT
            SHOCK PROTEIN B) >pir||S39765 chaperonin 60 - Coxiella burnetii
            >gi|144998 (M20482) heat shock protein B (htpB) [Coxiella burnetii]
            Length = 552
	    Score = 384 (135.2 bits), Expect = 1.0e-40, Sum P(2) = 1.0e-40
  =>sp|P45746|CH60_THETH 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >gnl|PID|d1008894 (D45880) chaperonin-60 [Thermus thermophilus]
            >prf||2117332B chaperonin 60 [Thermus aquaticus thermophilus]
            Length = 543
	    Score = 333 (117.2 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
  =>gnl|PID|d1026153 (AB008146) similar to GroEL protein [Klebsiella pneumoniae]
            Length = 540
	    Score = 333 (117.2 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
  =>sp|Q59177|CH60_BUCAP 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >gnl|PID|d1013531 (D85628) 60 kd chaperonin [Buchnera aphidicola]
            >gi|2827007 (AF008210) chaperone Hsp60 [Buchnera aphidicola]
            Length = 551
	    Score = 312 (109.8 bits), Expect = 1.4e-40, Sum P(3) = 1.4e-40
  =>gnl|PID|d1026137 (AB008138) similar to GroEL protein [Enterobacter
            intermedius]
            Length = 539
	    Score = 335 (117.9 bits), Expect = 2.5e-40, Sum P(2) = 2.5e-40
  =>gi|3322286 (AE001188) heat shock protein (groEL) [Treponema pallidum]
            Length = 544
	    Score = 347 (122.2 bits), Expect = 3.0e-40, Sum P(2) = 3.0e-40
  =>gnl|PID|d1026151 (AB008145) similar to GroEL protein [Serratia marcescens]
            Length = 540
	    Score = 336 (118.3 bits), Expect = 5.1e-40, Sum P(2) = 5.1e-40
  =>gnl|PID|d1026143 (AB008141) similar to GroEL protein [Enterobacter aerogenes]
            Length = 540
	    Score = 328 (115.5 bits), Expect = 5.1e-40, Sum P(2) = 5.1e-40
  =>gnl|PID|d1024722 (D78139) GroEL1 [Synechococcus vulcanus]
            Length = 545
	    Score = 309 (108.8 bits), Expect = 5.5e-40, Sum P(2) = 5.5e-40
  =>sp|P95800|CH60_XANMA 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >gi|1814240 (U68778) GroEL [Stenotrophomonas maltophilia]
            Length = 548
	    Score = 334 (117.6 bits), Expect = 6.2e-40, Sum P(3) = 6.2e-40
  =>sp|P31681|CH60_CHLPN 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||S19023 groEL protein homolog - Chlamydia pneumoniae >gi|48933
            (X60068) GroEL homolog; 58,284 Da [Chlamydia pneumoniae] >gi|144502
            (M69217) putative [Chlamydia pneumoniae]
            Length = 544
	    Score = 323 (113.7 bits), Expect = 8.0e-40, Sum P(2) = 8.0e-40
  =>sp|P30717|CH60_CLOAB 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||B41872 heat shock protein groEL - Clostridium acetobutylicum
            >gi|144827 (M74572) groEL [Clostridium acetobutylicum]
            Length = 543
	    Score = 331 (116.5 bits), Expect = 8.1e-40, Sum P(2) = 8.1e-40
  =>sp|P42385|CH60_NEIME 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN) (63 KD
            STRESS PROTEIN) (GSP63) >pir||S61303 heat shock protein 63 -
            Neisseria meningitidis (fragment) >gi|438206 (Z22956) heat-shock
            protein [Neisseria meningitidis]
            Length = 544
	    Score = 346 (121.8 bits), Expect = 8.1e-40, Sum P(2) = 8.1e-40
  =>gi|1841532 (U77379) GroEL-related molecular chaperonin SymL [Sitobion avenae
            endosymbiont]
            Length = 548
	    Score = 301 (106.0 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
  =>gnl|PID|d1026147 (AB008143) similar to GroEL protein [Serratia rubidaea]
            Length = 539
	    Score = 336 (118.3 bits), Expect = 1.3e-39, Sum P(2) = 1.3e-39
  =>gnl|PID|d1026141 (AB008140) similar to GroEL protein [Enterobacter amnigenus]
            Length = 539
	    Score = 333 (117.2 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
  =>sp|Q00768|CH62_STRAL 60 KD CHAPERONIN 2 (PROTEIN CPN60 2) (GROEL PROTEIN 2)
            (HSP56) >pir||C41325 heat shock protein 56 - Streptomyces albus
            >gi|153294 (M76658) open reading frame; GROEL1 encodes two gene
            products, related to a second GROEL-like gene (GROEL2) in S.albus
            [Streptomyces albus]
            Length = 540
	    Score = 328 (115.5 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
  =>pir||A49209 heat shock protein HSP60 - Lyme disease spirochete >gi|39374
            (X65139) 60 kDa heat shock protein [Borrelia burgdorferi]
            >gi|2688576 (AE001166) heat shock protein (groEL) [Borrelia
            burgdorferi]
            Length = 545
	    Score = 322 (113.3 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
  =>gi|39365 (X54059) common antigen [Borrelia burgdorferi]
          Length = 545
	    Score = 322 (113.3 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
  =>pir||S16428 heat shock protein 60 - Lyme disease spirochete
            Length = 545
	    Score = 322 (113.3 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
  =>sp|P27575|CH60_BORBU 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            Length = 545
	    Score = 322 (113.3 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
  =>gi|1841530 (U77380) GroEL-related molecular chaperonin SymL [Rhopalosiphum
            padi endosymbiont]
            Length = 548
	    Score = 312 (109.8 bits), Expect = 1.8e-39, Sum P(3) = 1.8e-39
  =>sp|P23033|CH60_TREPA 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN) (TPN60)
            (TP4 ANTIGEN) >pir||S33213 Tp4 antigen - Treponema pallidum
            >gnl|PID|e1234855 (X54111) heat shock protein [Treponema pallidum]
            Length = 544
	    Score = 347 (122.2 bits), Expect = 2.7e-39, Sum P(2) = 2.7e-39
  =>gnl|PID|d1026155 (AB008147) similar to GroEL protein [Klebsiella oxytoca]
            Length = 540
	    Score = 320 (112.6 bits), Expect = 2.7e-39, Sum P(2) = 2.7e-39
  =>gnl|PID|d1026163 (AB008151) similar to GroEL protein [Pantoea ananas]
            Length = 541
	    Score = 324 (114.1 bits), Expect = 3.1e-39, Sum P(2) = 3.1e-39
  =>sp|P26821|CH60_CLOPE 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||S22342 chaperonin HSP60 - Clostridium perfringens >gi|40572
            (X62914) HSP60 chaperonin [Clostridium perfringens]
            Length = 539
	    Score = 319 (112.3 bits), Expect = 3.4e-39, Sum P(2) = 3.4e-39
  =>gi|1122942 (U29483) GroEL-like chaperonin [Thermus aquaticus]
            Length = 543
	    Score = 320 (112.6 bits), Expect = 3.6e-39, Sum P(2) = 3.6e-39
  =>gnl|PID|d1026149 (AB008144) similar to GroEL protein [Serratia ficaria]
            Length = 540
	    Score = 334 (117.6 bits), Expect = 4.8e-39, Sum P(2) = 4.8e-39
  =>sp|P26194|CH60_LEGMI 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN) (58 KD
            COMMON ANTIGEN) >pir||B54539 heat shock protein groEL - Legionella
            micdadei >prf||1708212B heat shock protein [Legionella micdadei]
            Length = 546
	    Score = 311 (109.5 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
  =>pir||JC5130 heat shock protein GroEL - Bacillus sp >gnl|PID|d1010136 (D55630)
            GroEL [Bacillus sp.]
            Length = 544
	    Score = 300 (105.6 bits), Expect = 1.6e-38, Sum P(3) = 1.6e-38
  =>gnl|PID|d1026135 (AB008137) similar to GroEL protein; stress protein
            [Enterobacter asburiae]
            Length = 539
	    Score = 319 (112.3 bits), Expect = 2.4e-38, Sum P(2) = 2.4e-38
  =>gnl|PID|d1026159 (AB008149) similar to GroEL protein [Klebsiella
            ornithinolytica]
            Length = 540
	    Score = 319 (112.3 bits), Expect = 2.4e-38, Sum P(2) = 2.4e-38
  =>gnl|PID|d1026167 (AB008153) similar to GroEL protein [Erwinia aphidicola]
            Length = 540
	    Score = 320 (112.6 bits), Expect = 3.0e-38, Sum P(2) = 3.0e-38
  =>sp|P37282|CH60_LACLA 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||S32106 groEL protein - Lactococcus lactis >pir||JN0661 heat
            shock protein groEL - Lactococcus lactis subsp. lactis >gi|287871
            (X71132) groEL gene product [Lactococcus lactis]
            Length = 542
	    Score = 317 (111.6 bits), Expect = 3.4e-38, Sum P(2) = 3.4e-38
  =>gnl|PID|d1026145 (AB008142) similar to GroEL protein [Enterobacter
            agglomerans]
            Length = 539
	    Score = 319 (112.3 bits), Expect = 3.8e-38, Sum P(2) = 3.8e-38
  =>sp|Q00767|CH61_STRAL 60 KD CHAPERONIN 1 (PROTEIN CPN60 1) (GROEL PROTEIN 1)
            (HSP58) >pir||B41325 heat shock protein 58 - Streptomyces albus
            >gi|153292 (M76657) GROEL1 protein [Streptomyces albus]
            Length = 540
	    Score = 312 (109.8 bits), Expect = 6.0e-38, Sum P(2) = 6.0e-38
  =>sp|Q42695|RUBC_CHLRE RUBISCO SUBUNIT BINDING-PROTEIN BETA-2 SUBUNIT (60 KD
            CHAPERONIN BETA-2 SUBUNIT) (CPN-60 BETA-2) >pir||S56646 chaperonin
            60 beta-2 chain - Chlamydomonas reinhardtii (fragment) >gi|1293535
            (L27473) chaperonin beta-like subunit [Chlamydomonas reinhardtii]
            Length = 259
	    Score = 305 (107.4 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
  =>sp|P40171|CH61_STRCO 60 KD CHAPERONIN 1 (PROTEIN CPN60 1) (GROEL PROTEIN 1)
            (HSP58) >pir||S37566 groEL1 protein - Streptomyces coelicolor
            >gi|406598 (X75206) GroEL1 [Streptomyces coelicolor]
            Length = 540
	    Score = 309 (108.8 bits), Expect = 1.7e-37, Sum P(2) = 1.7e-37
  =>gi|2286188 (AF010281) GroEL [Lactobacillus zeae]
            Length = 544
	    Score = 318 (111.9 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
  =>sp|P51349|CH60_PORPU 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||S73270 chaperonin, 60K - Porphyra purpurea chloroplast
            >gi|1276815 (U38804) 60 kd chaperonin [Porphyra purpurea]
            Length = 528
	    Score = 314 (110.5 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
  =>gnl|PID|e187584 (X89236) heat shock protein [Streptococcus pyogenes]
            Length = 481
	    Score = 305 (107.4 bits), Expect = 1.5e-36, Sum P(2) = 1.5e-36
  =>gnl|PID|e226025 (X95970) GroEL1 protein [Streptomyces lividans]
            Length = 541
	    Score = 305 (107.4 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
  =>sp|P22879|CH60_SYNP7 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||BVYCGL groEL protein - Synechococcus sp. (PCC 7942)
            >gi|154521 (M58751) chaperonin [Synechococcus sp.]
            Length = 544
	    Score = 293 (103.1 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
  =>sp|Q07201|CH60_BACST 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >gi|289300 (L10132) groESL operon [Bacillus stearothermophilus]
            Length = 539
	    Score = 307 (108.1 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
  =>pir||B44425 chaperonin groEL - Synechocystis sp. (PCC 6803) >gnl|PID|d1002670
            (D12677) GroEL [Synechocystis sp.]
            Length = 541
	    Score = 297 (104.5 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
  =>sp|Q05972|CH61_SYNY3 60 KD CHAPERONIN 1 (PROTEIN CPN60 1) (GROEL HOMOLOG 1)
            >gnl|PID|d1018144 (D90905) 60kD chaperonin 1 [Synechocystis sp.]
            Length = 541
	    Score = 297 (104.5 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
  =>sp|P21238|RUBA_ARATH RUBISCO SUBUNIT BINDING-PROTEIN ALPHA SUBUNIT PRECURSOR
            (60 KD CHAPERONIN ALPHA SUBUNIT) (CPN-60 ALPHA) >pir||S71235
            chaperonin-60 alpha chain - Arabidopsis thaliana >gi|1223910
            (U49357) chaperonin-60 alpha subunit [Arabidopsis thaliana]
            Length = 586
	    Score = 276 (97.2 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
  =>sp|P48216|CH60_PSEPU 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||S51563 heat shock protein groEL - Pseudomonas putida
            >gi|468560 (X78435) GroEL [Pseudomonas putida]
            Length = 545
	    Score = 357 (125.7 bits), Expect = 4.2e-36, Sum P(2) = 4.2e-36
  =>sp|P26209|CH60_BACP3 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN) (HEAT
            SHOCK 61 KD PROTEIN) >pir||JQ1195 heat shock protein TGroEL -
            thermophilic bacterium PS-3
            Length = 538
	    Score = 303 (106.7 bits), Expect = 4.3e-36, Sum P(2) = 4.3e-36
  =>sp|Q08854|CH60_STAAU 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN) (HEAT
            SHOCK PROTEIN 60) >pir||JN0601 heat shock protein 60 -
            Staphylococcus aureus >gnl|PID|d1004044 (D14711) HSP60
            [Staphylococcus aureus]
            Length = 539
	    Score = 314 (110.5 bits), Expect = 4.3e-36, Sum P(2) = 4.3e-36
  =>gi|2564749 (AF029366) chaperonin 60 [Entamoeba histolytica]
            Length = 536
	    Score = 314 (110.5 bits), Expect = 5.2e-36, Sum P(2) = 5.2e-36
  =>sp|Q42693|RUBB_CHLRE RUBISCO SUBUNIT BINDING-PROTEIN BETA-1 SUBUNIT (60 KD
            CHAPERONIN BETA-1 SUBUNIT) (CPN-60 BETA-1) >gi|603911 (L27471)
            chaperonin beta-like subunit [Chlamydomonas reinhardtii]
            Length = 435
	    Score = 302 (106.3 bits), Expect = 7.0e-36, Sum P(2) = 7.0e-36
  =>pir||S56644 chaperonin 60 beta-1 chain - Chlamydomonas reinhardtii (fragment)
            Length = 435
	    Score = 302 (106.3 bits), Expect = 7.0e-36, Sum P(2) = 7.0e-36
  =>pir||B49855 heat shock protein GroEL - Bacillus stearothermophilus
            Length = 539
	    Score = 302 (106.3 bits), Expect = 7.1e-36, Sum P(2) = 7.1e-36
  =>sp|Q43831|RUBB_SECCE RUBISCO SUBUNIT BINDING-PROTEIN BETA SUBUNIT (60 KD
            CHAPERONIN BETA SUBUNIT) (CPN-60 BETA) >gnl|PID|e219955 (Z68903)
            chaperonin [Secale cereale]
            Length = 499
	    Score = 319 (112.3 bits), Expect = 8.1e-36, Sum P(2) = 8.1e-36
  =>sp|P28256|CH60_CYACA 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||S26877 groEL protein - red alga (Cyanidium caldarium)
            chloroplast >gi|11284 (X62578) similar to bacterial Rubisco subunit
            binding proteins [Cyanidium caldarium]
            Length = 534
	    Score = 303 (106.7 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
  =>gnl|PID|e259423 (X98853) groEL [Francisella tularensis]
            Length = 544
	    Score = 364 (128.1 bits), Expect = 3.2e-35, Sum P(2) = 3.2e-35
  =>sp|P21240|RUBB_ARATH RUBISCO SUBUNIT BINDING-PROTEIN BETA SUBUNIT PRECURSOR
            (60 KD CHAPERONIN BETA SUBUNIT) (CPN-60 BETA)
            Length = 600
	    Score = 321 (113.0 bits), Expect = 7.9e-35, Sum P(2) = 7.9e-35
  =>pir||JT0901 chaperonin 60 beta - Arabidopsis thaliana
            Length = 600
	    Score = 321 (113.0 bits), Expect = 7.9e-35, Sum P(2) = 7.9e-35
  =>gi|1762130 (U46136) chaperonin-60 beta subunit [Solanum tuberosum]
            Length = 599
	    Score = 316 (111.2 bits), Expect = 8.5e-35, Sum P(2) = 8.5e-35
  =>sp|P21239|RUB1_BRANA RUBISCO SUBUNIT BINDING-PROTEIN ALPHA SUBUNIT PRECURSOR
            (60 KD CHAPERONIN ALPHA SUBUNIT) (CPN-60 ALPHA) >gi|289365 (M35599)
            60-kDa chaperonin-60 alpha-polypeptide precursor [Brassica napus]
            Length = 546
	    Score = 273 (96.1 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
  =>sp|P08926|RUBA_PEA RUBISCO SUBUNIT BINDING-PROTEIN ALPHA SUBUNIT PRECURSOR (60
            KD CHAPERONIN ALPHA SUBUNIT) (CPN-60 ALPHA) >gi|1185390 (U21105)
            alphacpn60 [Pisum sativum]
            Length = 587
	    Score = 285 (100.3 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
  =>sp|P21241|RUBB_BRANA RUBISCO SUBUNIT BINDING-PROTEIN BETA SUBUNIT PRECURSOR
            (60 KD CHAPERONIN BETA SUBUNIT) (CPN-60 BETA) >pir||PW0007
            chaperonin 62.5K beta chain - rape plastid >gi|167117 (M35600)
            60-kDa beta-polypeptide of plastid chaperonin-60 precursor
            [Brassica napus]
            Length = 588
	    Score = 317 (111.6 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
  =>sp|Q37757|CH60_CYAPA 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >gi|1016085 (U30821) GroEL [Cyanophora paradoxa] >gi|1016207
            (U30821) chaperonin-60; GroEL subunit of molecular chaperone
            [Cyanophora paradoxa]
            Length = 541
	    Score = 286 (100.7 bits), Expect = 3.7e-34, Sum P(2) = 3.7e-34
  =>gi|3004893 (AF030975) chaperonin GroEL [Aeromonas salmonicida]
            Length = 544
	    Score = 348 (122.5 bits), Expect = 7.4e-34, Sum P(2) = 7.4e-34
  =>gi|607158 (Z37730) putative chaperonine [Prochlorococcus marinus]
           Length = 444
	    Score = 280 (98.6 bits), Expect = 7.5e-34, Sum P(2) = 7.5e-34
  =>sp|P48218|CH60_STAEP 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN) (HEAT
            SHOCK PROTEIN 60) >gi|535342 (U13618) heat shock protein 60
            [Staphylococcus epidermidis]
            Length = 539
	    Score = 286 (100.7 bits), Expect = 9.6e-34, Sum P(2) = 9.6e-34
  =>sp|P08927|RUBB_PEA RUBISCO SUBUNIT BINDING-PROTEIN BETA SUBUNIT PRECURSOR (60
            KD CHAPERONIN BETA SUBUNIT) (CPN-60 BETA) >gi|806808 (U21139)
            chaperonin precursor [Pisum sativum]
            Length = 595
	    Score = 303 (106.7 bits), Expect = 6.0e-33, Sum P(2) = 6.0e-33
  =>sp|P34794|RUB2_BRANA RUBISCO SUBUNIT BINDING-PROTEIN ALPHA SUBUNIT PRECURSOR
            (60 KD CHAPERONIN ALPHA SUBUNIT) (CPN-60 ALPHA) >pir||S38642
            chaperonin-60 alpha chain - rape >gi|415925 (Z27222) chaperonin-60
            alpha subunit [Brassica napus]
            Length = 583
	    Score = 250 (88.0 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
  =>sp|P08823|RUBA_WHEAT RUBISCO SUBUNIT BINDING-PROTEIN ALPHA SUBUNIT PRECURSOR
            (60 KD CHAPERONIN ALPHA SUBUNIT) (CPN-60 ALPHA) >pir||HHWTBA
            ribulose-bisphosphate carboxylase subunit-binding protein alpha
            chain - wheat (fragment) >gnl|PID|e11919 (X07851) rubisco subunit
            binding-protein alpha subunit ( 543 AA ) [Triticum aestivum]
            Length = 543
	    Score = 270 (95.0 bits), Expect = 1.5e-32, Sum P(2) = 1.5e-32
  =>sp|P49464|CH60_ODOSI 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >gnl|PID|e211837 (Z67753) chaperonin, 60 kDa [Odontella sinensis]
            Length = 528
	    Score = 281 (98.9 bits), Expect = 2.7e-32, Sum P(2) = 2.7e-32
  =>pir||B47292 heat shock protein groEL - Mycobacterium tuberculosis >gi|44601
            (X60350) KCS [Mycobacterium tuberculosis]
            Length = 539
	    Score = 297 (104.5 bits), Expect = 2.9e-32, Sum P(2) = 2.9e-32
  =>sp|P46224|CH60_PYRSA 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||S49253 rubisco binding protein small chain CPN60 -
            Pyrenomonas salina >gi|550143 (X81356) CPN60, RUBISCO small subunit
            binding protein [Pyrenomonas salina]
            Length = 585
	    Score = 276 (97.2 bits), Expect = 3.3e-32, Sum P(2) = 3.3e-32
  =>sp|Q59573|CH61_MYCTU 60 KD CHAPERONIN 1 (PROTEIN CPN60 1) (GROEL PROTEIN 1)
            >gnl|PID|e255081 (Z77165) groEL1 [Mycobacterium tuberculosis]
            Length = 539
	    Score = 296 (104.2 bits), Expect = 3.8e-32, Sum P(2) = 3.8e-32
  =>sp|P37578|CH61_MYCLE 60 KD CHAPERONIN 1 (PROTEIN CPN60 1) (GROEL PROTEIN 1)
            >pir||S25181 heat shock protein groEL - Mycobacterium leprae
            >pir||S72819 heat shock protein GroEl - Mycobacterium leprae
            >gi|466940 (U00015) groEl; B1620_C3_228 [Mycobacterium leprae]
            >gi|467130 (U00020) groE1; GroE1 protein ; B229_C3_248
            [Mycobacterium leprae]
            Length = 537
	    Score = 283 (99.6 bits), Expect = 9.6e-32, Sum P(2) = 9.6e-32
  =>gi|1899190 (U90204) heat shock protein 60 [Tsukamurella tyrosinosolvens]
            Length = 539
	    Score = 279 (98.2 bits), Expect = 2.2e-31, Sum P(2) = 2.2e-31
  =>pir||PW0005 chaperonine 60K alpha chain - rape plastid (fragment)
            Length = 545
	    Score = 243 (85.5 bits), Expect = 3.1e-31, Sum P(2) = 3.1e-31
  =>sp|Q42694|RUBA_CHLRE RUBISCO SUBUNIT BINDING-PROTEIN ALPHA SUBUNIT PRECURSOR
            (60 KD CHAPERONIN ALPHA SUBUNIT) (CPN-60 ALPHA) >pir||S71760
            chaperonin 60 alpha chain - Chlamydomonas reinhardtii >gi|603913
            (L27472) chaperonin alpha-like subunit [Chlamydomonas reinhardtii]
            Length = 580
	    Score = 273 (96.1 bits), Expect = 6.0e-31, Sum P(2) = 6.0e-31
  =>pir||S56645 chaperonin 60 alpha chain precursor - Chlamydomonas reinhardtii
            Length = 580
	    Score = 273 (96.1 bits), Expect = 6.0e-31, Sum P(2) = 6.0e-31
  =>pir||PS0374 chaperonin 60 beta (clone bX) - Arabidopsis thaliana (fragment)
            Length = 177
	    Score = 258 (90.8 bits), Expect = 9.6e-31, Sum P(2) = 9.6e-31
  =>sp|P08824|RUBA_RICCO RUBISCO SUBUNIT BINDING-PROTEIN ALPHA SUBUNIT (60 KD
            CHAPERONIN ALPHA SUBUNIT) (CPN-60 ALPHA) >pir||HHCSBA
            ribulose-bisphosphate carboxylase subunit-binding protein alpha
            chain - castor bean (fragment)
            Length = 495
	    Score = 286 (100.7 bits), Expect = 9.6e-30, Sum P(2) = 9.6e-30
  =>gi|2246629 (AF005236) GroEL [Sitophilus oryzae principal endosymbiont]
            Length = 538
	    Score = 338 (119.0 bits), Expect = 1.4e-29, P = 1.4e-29
  =>gi|560550 (U15989) PTB65K [Mycobacterium avium paratuberculosis]
           Length = 582
	    Score = 318 (111.9 bits), Expect = 2.4e-29, Sum P(2) = 2.4e-29
  =>sp|P42384|CH60_MYCPA 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN) (65 KD
            ANTIGEN) (HEAT SHOCK PROTEIN 65) >pir||S40245 heat shock protein 65
            - Mycobacterium paratuberculosis >gi|438181 (X74518) heat shock
            protein 65 [Mycobacterium paratuberculosis]
            Length = 541
	    Score = 308 (108.4 bits), Expect = 1.8e-28, Sum P(2) = 1.8e-28
  =>sp|P09239|CH62_MYCLE 60 KD CHAPERONIN 2 (PROTEIN CPN60 2) (GROEL PROTEIN 2)
            (65 KD ANTIGEN)
            Length = 541
	    Score = 319 (112.3 bits), Expect = 2.0e-27, P = 2.0e-27
  =>gi|149924 (M14341) 65 kd antigen [Mycobacterium leprae]
           Length = 588
	    Score = 319 (112.3 bits), Expect = 2.8e-27, P = 2.8e-27
  =>pir||A25902 65K antigen - Mycobacterium leprae
            Length = 588
	    Score = 319 (112.3 bits), Expect = 2.8e-27, P = 2.8e-27
  =>sp|P78012|CH60_MYCPN 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||S73595 heat shock protein GroEL - Mycoplasma pneumoniae
            (SGC3) (ATCC 29342) >gi|1673939 (AE000026) Mycoplasma pneumoniae,
            heat shock protein GroEL; similar to Swiss-Prot Accession Number
            Q07201, from B. subtilis [Mycoplasma pneumoniae]
            Length = 543
	    Score = 244 (85.9 bits), Expect = 2.0e-26, Sum P(2) = 2.0e-26
  =>gi|2772932 (AF029695) chaperonin 60; cpn60 [Giardia intestinalis]
            Length = 547
	    Score = 246 (86.6 bits), Expect = 3.2e-26, Sum P(2) = 3.2e-26
  =>sp|P47632|CH60_MYCGE 60 KD CHAPERONIN (PROTEIN CPN60) (GROEL PROTEIN)
            >pir||D64243 heat shock protein groEL - Mycoplasma genitalium
            (SGC3) >gi|1046104 (U39724) heat shock protein [Mycoplasma
            genitalium]
            Length = 543
	    Score = 246 (86.6 bits), Expect = 3.9e-26, Sum P(2) = 3.9e-26
  =>sp|P06806|CH62_MYCTU 60 KD CHAPERONIN 2 (PROTEIN CPN60 2) (GROEL PROTEIN 2)
            (65 KD ANTIGEN) (HEAT SHOCK PROTEIN 65) (CELL WALL PROTEIN A)
            (ANTIGEN A) >pir||A26950 65K antigen - Mycobacterium tuberculosis
            >pir||A43509 65K antigen mbaA - Mycobacterium bovis >gi|149934
            (M17705) antigen A [Mycobacterium bovis] >gi|150000 (M15467) cell
            wall protein A [Mycobacterium tuberculosis] >gnl|PID|e1252509
            (AL021932) groEL2 [Mycobacterium tuberculosis]
            Length = 540
	    Score = 303 (106.7 bits), Expect = 1.2e-25, P = 1.2e-25
  =>pir||JT0902 chaperonin 60 beta - wheat (fragment)
            Length = 156
	    Score = 201 (70.8 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
  =>sp|Q95058|CH60_TRIVA HYDROGENOSOMAL CHAPERONIN HSP60 (PROTEIN CPN60) (GROEL
            PROTEIN) (HEAT SHOCK PROTEIN 60) >gi|1621533 (U26966) TVAGHSP60
            protein [Trichomonas vaginalis]
            Length = 470
	    Score = 278 (97.9 bits), Expect = 3.8e-23, P = 3.8e-23
  =>gnl|PID|e226026 (X95971) GroEL2 protein [Streptomyces lividans]
            Length = 477
	    Score = 274 (96.5 bits), Expect = 1.1e-22, P = 1.1e-22
  =>gi|146269 (M11294) a.k.a. mopA [Escherichia coli]
           Length = 149
	    Score = 256 (90.1 bits), Expect = 2.9e-21, P = 2.9e-21
  =>sp|P50142|HS60_AJECA HEAT SHOCK PROTEIN 60 PRECURSOR (ANTIGEN HIS-62)
            >gi|951193 (L11390) heat shock protein 60 [Ajellomyces capsulatus]
            Length = 528
	    Score = 220 (77.4 bits), Expect = 1.3e-16, P = 1.3e-16
  =>gi|1511639 (U52924) cpn-60 [Naegleria fowleri]
            Length = 361
	    Score = 215 (75.7 bits), Expect = 1.3e-16, P = 1.3e-16
  =>sp|P34940|CH60_PLAFG MITOCHONDRIAL CHAPERONIN CPN60 PRECURSOR >pir||S38426
            chaperonin 60 precursor - Plasmodium falciparum >gi|407859 (X75420)
            P.falciparum (FCR3) cpn60 gene. [Plasmodium falciparum]
            Length = 700
	    Score = 179 (63.0 bits), Expect = 4.8e-16, Sum P(2) = 4.8e-16
  =>gi|2290615 (U96732) GroEL [Ehrlichia risticii]
            Length = 409
	    Score = 212 (74.6 bits), Expect = 4.8e-16, P = 4.8e-16
  =>gi|2290621 (U96734) GroEL [Bartonella henselae]
            Length = 408
	    Score = 211 (74.3 bits), Expect = 6.1e-16, P = 6.1e-16
  =>gi|2290612 (U96731) GroEL [Ehrlichia canis]
            Length = 410
	    Score = 211 (74.3 bits), Expect = 6.2e-16, P = 6.2e-16
  =>gi|675514 (L39934) cpn60 gene product [Entamoeba histolytica]
           Length = 366
	    Score = 209 (73.6 bits), Expect = 6.8e-16, P = 6.8e-16
  =>gi|2290618 (U96733) GroEL [Rickettsia rickettsii]
            Length = 408
	    Score = 208 (73.2 bits), Expect = 1.3e-15, P = 1.3e-15
  =>gi|1196511 (M15467) unknown protein [Mycobacterium tuberculosis]
            Length = 158
	    Score = 202 (71.1 bits), Expect = 1.5e-15, P = 1.5e-15
  =>gi|2290603 (U96728) GroEL [Ehrlichia sp. 'HGE agent'] >gi|2290606 (U96729)
            GroEL [Ehrlichia phagocytophila] >gi|2290609 (U96730) GroEL
            [Ehrlichia phagocytophila] >gi|2290624 (U96735) GroEL [Ehrlichia
            phagocytophila]
            Length = 409
	    Score = 205 (72.2 bits), Expect = 1.4e-14, P = 1.4e-14
  =>gi|1511641 (U52923) cpn-60 [Trichomonas vaginalis]
            Length = 360
	    Score = 202 (71.1 bits), Expect = 3.5e-14, P = 3.5e-14
  =>gi|3319328 (AF075440) GroEL [Rickettsia typhi]
            Length = 426
	    Score = 191 (67.2 bits), Expect = 2.7e-12, P = 2.7e-12
  =>gi|3169881 (AF033101) heat shock protein [Ehrlichia sp. 'HGE agent']
            Length = 402
	    Score = 183 (64.4 bits), Expect = 2.4e-11, P = 2.4e-11
  =>gi|3044086 (AF055904) unknown [Myxococcus xanthus]
            Length = 542
	    Score = 150 (52.8 bits), Expect = 3.9e-07, P = 3.9e-07
  =>gi|3153821 (AF062655) plenty-of-prolines-101; POP101; SH3-philo-protein [Mus
            musculus]
            Length = 897
	    Score = 119 (41.9 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
  =>gi|17504 (Z18404) Chaperonin 62.5K beta chain [Arabidopsis thaliana]
          Length = 79
	    Score = 119 (41.9 bits), Expect = 3.4e-06, P = 3.4e-06
  =>gi|3005587 (AF048977) Ser/Arg-related nuclear matrix protein [Homo sapiens]
            Length = 820
	    Score = 130 (45.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05

>CcruzaQ_790 has the following protein neighbors:
Sequence,   
  =>sp|P80296|MT1K_HUMAN METALLOTHIONEIN-IK (MT-1K)
            Length = 62
	    Score = 79 (27.8 bits), Expect = 0.084, P = 0.081

>CcruzaQ_242 has the following protein neighbors:
Sequence,   
  =>gi|567890 (L37352) beta-galactosidase-complementation protein [Cloning vector]
           Length = 157
	    Score = 198 (69.7 bits), Expect = 3.8e-26, Sum P(2) = 3.8e-26
  =>gi|567893 (L37382) beta-galactosidase-complementation protein [Cloning vector]
           Length = 158
	    Score = 198 (69.7 bits), Expect = 3.8e-26, Sum P(2) = 3.8e-26
  =>gnl|PID|e350493 (Y14836) beta-galactosidase [Phagemid cloning vector pTZ19U]
            Length = 158
	    Score = 198 (69.7 bits), Expect = 3.8e-26, Sum P(2) = 3.8e-26
  =>gi|529324 (U12540) beta-galactosidase alpha peptide [Cloning vector pBin19]
           Length = 107
	    Score = 119 (41.9 bits), Expect = 4.4e-22, Sum P(3) = 4.4e-22
  =>gi|595775 (U13869) lacZ alpha peptide [Cloning vector]
           Length = 179
	    Score = 211 (74.3 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
  =>gi|595780 (U13871) lacZ alpha peptide [Cloning vector]
           Length = 187
	    Score = 211 (74.3 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
  =>gi|1236970 (U50331) beta galactosidase alpha complement [Cloning vector
            pBRkanf1]
            Length = 74
	    Score = 122 (42.9 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
  =>gi|1673616 (U76715) LacZ [Cloning vector pBRkanf4]
            Length = 94
	    Score = 122 (42.9 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
  =>gi|499099 (U09942) beta-galactosidase alpha-peptide [Cloning vector pDB31]
           Length = 106
	    Score = 119 (41.9 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
  =>gi|603177 (U17500) lac alpha peptide [Cloning vector pEX100T]
           Length = 94
	    Score = 119 (41.9 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
  =>gi|2218144 (AF004910) lac alpha peptide [Cloning vector pEX18T] >gi|2961142
            (AF047518) lac alpha peptide [Cloning vector pEX18Gm] >gi|2961146
            (AF047519) lac alpha peptide [Cloning vector pEX18Tc]
            Length = 94
	    Score = 119 (41.9 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
  =>gi|994736 (M18327) LacOPZ-alpha peptide from pUC9; putative [cloning vectors]
           >gi|994738 (M18328) LacOPZ-alpha peptide from pUC9; putative
           [cloning vectors] >gi|994740 (M18329) LacOPZ-alpha peptide from
           pUC9; putative [cloning vectors]
           Length = 93
	    Score = 116 (40.8 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
  =>gi|2501755 (U66885) lacZ-alpha [bacteriophage lambda] >gi|2501802 (U87107)
            beta-galactosidase [Cloning vector pAL-F]
            Length = 154
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|455369 (M19265) lacZ' [Cloning vector]
           Length = 99
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|434648 (U03991) beta-galactosidase alpha peptide [Cloning vector pUC1918]
           Length = 125
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|208131 (M77169) beta-galactosidase alpha-peptide [Cloning vector]
           >gi|3132861 (U90554) beta-galactosidase alpha peptide [Shuttle
           vector pJIR1456] >gi|3132864 (U90555) beta-galactosidase alpha
           peptide [Shuttle vector pJIR1457]
           Length = 107
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|603174 (U17499) lac alpha peptide [Cloning vector pUCSce]
           Length = 107
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|1016680 (U30830) beta-galactosidase [Cloning vector pFD288]
            Length = 95
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|2353792 (AF016541) beta-galactosidase alpha peptide [Cloning vector pUC-JK]
            Length = 108
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gnl|PID|e350489 (Y14837) beta-galactosidase [Cloning vector pUC57]
            Length = 115
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|2981187 (AF049063) lacZ alpha peptide [Expression vector pYZ1N] >gi|3136318
            (AF064066) lacZ alpha peptide [Expression vector pYZ41N]
            >gi|3136322 (AF064067) lacZ alpha peptide [Expression vector
            pYZ81N]
            Length = 79
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|348687 (L02937) beta-galactosidase alpha-peptide [Clostridium perfringens]
           >gi|348688 (L02938) beta-galactosidase alpha-peptide [Clostridium
           perfringens]
           Length = 53
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|392881 (U00800) lacZ alpha peptide [Escherichia coli]
           Length = 94
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|41904 (X16313) lacZ 5'-region [Escherichia coli]
          Length = 147
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|312368 (X70493) lacZ [Bacteriophage M13mp18]
           Length = 102
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|403937 (U01668) beta-galactosidase fragment [Phagemid cloning vector pKSS]
           Length = 53
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|208243 (M34519) b-galactosidase [Cloning vector]
           Length = 60
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|209095 (M21875) beta-galactosidase alpha-chain [Cloning vector]
           Length = 87
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|773414 (U23751) beta galactosidase [Cloning vector pBBR1MCS-2] >gi|833819
           (U25059) LacZ alpha peptide [Cloning vector pBBR1MCS-3] >gi|833823
           (U25060) LacZ alpha peptide [Cloning vector pBBR1MCS-4] >gi|833827
           (U25061) LacZ alpha peptide [Cloning vector pBBR1MCS-5]
           Length = 121
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|847865 (U26464) beta-galactosidase alpha [Cloning vector pZC320]
           Length = 100
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|993048 (U33186) beta-galactosidase alpha peptide [Cloning vector pSUM36]
           Length = 56
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|995518 (X91197) pid:e198830 [Escherichia coli]
           Length = 81
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|1132426 (U39779) beta-galactosidase alpha polypeptide [Cloning vector
            pTriplEx]
            Length = 139
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|2071947 (U84006) beta-galactosidase [Expression vector pBSII-LUCINT]
            Length = 69
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|2343029 (U75322) beta-galactosidase [Cloning vector pJB3Cm6] >gi|2343034
            (U75323) beta-galactosidase [Cloning vector pJB3Km1] >gi|2343040
            (U75324) beta-galactosidase [Cloning vector pJB3Tc20] >gi|2343045
            (U75325) beta-galactosidase [Cloning vector pJB321]
            Length = 79
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gnl|PID|e350491 (Y14835) beta-galactosidase [Phagemid cloning vector pTZ19R]
            Length = 88
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|2981192 (AF049064) lacZ alpha peptide [Expression vector pYZ3X-GFP]
            Length = 80
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gnl|PID|e1314506 (AJ007829) lacZ' [Cloning vector pGreen]
            Length = 120
	    Score = 119 (41.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
  =>gi|209078 (M37847) alpha-peptide [Cloning vector]
           Length = 65
	    Score = 176 (62.0 bits), Expect = 8.6e-13, P = 8.6e-13
  =>gnl|PID|d1010545 (D63840) modified alpha peptide of E. coli beta-galactosidase
            [Cloning vector pKF296] >gnl|PID|d1010553 (D63844) modified alpha
            peptide of E. coli beta-galactosidase [Cloning vector pKF16k]
            Length = 106
	    Score = 119 (41.9 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
  =>gnl|PID|d1010547 (D63841) modified alpha peptide of E. coli beta-galactosidase
            [Cloning vector pKF297] >gnl|PID|d1010555 (D63845) modified alpha
            peptide of E. coli beta-galactosidase [Cloning vector pKF17k]
            Length = 106
	    Score = 119 (41.9 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
  =>gnl|PID|d1010549 (D63842) modified alpha peptide of E. coli beta-galactosidase
            [Cloning vector pKF298] >gnl|PID|d1010557 (D63846) modified alpha
            peptide of E. coli beta-galactosidase [Cloning vector pKF18k]
            Length = 102
	    Score = 119 (41.9 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
  =>gnl|PID|d1010551 (D63843) modified alpha peptide of E. coli beta-galactosidase
            [Cloning vector pKF299] >gnl|PID|d1010559 (D63847) modified alpha
            peptide of E. coli beta-galactosidase [Cloning vector pKF19k]
            Length = 102
	    Score = 119 (41.9 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
  =>gi|531829 (U12390) beta-galactosidase alpha peptide [cloning vector pSport1]
           Length = 114
	    Score = 119 (41.9 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
  =>gi|825756 (U12391) beta-galactosidase alpha peptide [Cloning vector pSport2]
           Length = 114
	    Score = 119 (41.9 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
  =>pir||I60307 beta-galactosidase, alpha peptide - Escherichia coli
            >gnl|PID|d1006768 (D29828) beta-galactosidase alpha-peptide
            [Cloning vector pKF16c] >gnl|PID|d1006760 (D29824)
            beta-galactosidase alpha-peptide [Cloning vector pKF396]
            Length = 80
	    Score = 119 (41.9 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
  =>gnl|PID|d1006770 (D29829) beta-galactosidase alpha-peptide [Cloning vector
            pKF17c] >gnl|PID|d1006762 (D29825) beta-galactosidase alpha-peptide
            [Cloning vector pKF397]
            Length = 80
	    Score = 119 (41.9 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
  =>gnl|PID|d1006772 (D29830) beta-galactosidase alpha-peptide [Cloning vector
            pKF18c] >gnl|PID|d1006764 (D29826) beta-galactosidase alpha-peptide
            [Cloning vector pKF398]
            Length = 76
	    Score = 119 (41.9 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
  =>gnl|PID|d1006774 (D29831) beta-galactosidase alpha-peptide [Cloning vector
            pKF19c] >gnl|PID|d1006766 (D29827) beta-galactosidase alpha-peptide
            [Cloning vector pKF399]
            Length = 76
	    Score = 119 (41.9 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
  =>gi|208984 (M88655) Modified lacZ' [Cloning vector]
           Length = 166
	    Score = 119 (41.9 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
  =>gi|975873 (U32311) beta-galactosidase alpha complemention peptide [Cloning
           vector pOTSf1Blu]
           Length = 67
	    Score = 119 (41.9 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
  =>gi|1658409 (U73899) beta-galactosidase [Cloning vector pJB3]
            Length = 76
	    Score = 119 (41.9 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
  =>gi|460935 (U07164) LacZ alpha peptide [Cloning vector pUCP18] >gi|460939
           (U07165) LacZ alpha peptide [Cloning vector pUCP20] >gi|460943
           (U07166) LacZ alpha peptide [Cloning vector pUCP22] >gi|460948
           (U07167) LacZ alpha peptide [Cloning vector pUCP24] >gi|460952
           (U07168) LacZ alpha peptide [Cloning vector pUCP26] >gi|1144476
           (U33750) beta galactosidase alpha peptide [Cloning vector pUCP20T]
           >gi|1144481 (U33751) beta galactosidase alpha peptide [Cloning
           vector pUCP28T] >gi|1144485 (U33752) beta galactosidase alpha
           peptide [Cloning vector pUCP30T]
           Length = 84
	    Score = 119 (41.9 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
  =>gi|146581 (M74750) LacZ-alpha peptide [Escherichia coli] >gi|450838 (U04894)
           beta-galactosidase alpha peptide [Cloning vector pKSM711] >gi|450841
           (U04895) beta-galactosidase alpha peptide [Cloning vector pKSM713]
           >gi|450845 (U04896) beta-galactosidase alpha peptide [Cloning vector
           pKSM715]
           Length = 90
	    Score = 119 (41.9 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
  =>gi|208991 (M74186) protein A signal fusion protein [Cloning vector]
           Length = 241
	    Score = 119 (41.9 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
  =>gi|209004 (M36415) pfxblue fusion protein [Artificial gene]
           Length = 206
	    Score = 119 (41.9 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
  =>gi|987050 (X65335) lacZ gene product [unidentified cloning vector]
           Length = 209
	    Score = 119 (41.9 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
  =>gi|1332396 (M74187) ZZ:beta-Gal' IgG-binding fusion protein [unidentified
            cloning vector]
            Length = 215
	    Score = 119 (41.9 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
  =>gi|2623823 (AF031088) maltose binding protein-lacZ alpha peptide fusion
            protein precursor [Shuttle vector pMAL-pIII]
            Length = 482
	    Score = 119 (41.9 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
  =>gi|2654021 (AF031813) maltose binding protein-lacZ-alpha fusion protein
            [Expression vector pMal-X]
            Length = 496
	    Score = 119 (41.9 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
  =>gi|1546041 (U64693) beta-galactosidase [Cloning vector pRSQ2-LEU2] >gi|1546046
            (U64694) beta-galactosidase [Cloning vector pRSQ2-URA3]
            Length = 204
	    Score = 115 (40.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
  =>gi|208408 (M35437) beta-galactosidase [Cloning vector]
           Length = 51
	    Score = 119 (41.9 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
  =>gi|455368 (M13163) lacZ' [Cloning vector]
           Length = 92
	    Score = 119 (41.9 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
  =>gnl|PID|e267089 (X98500) fused; toxic gene [unidentified]
            Length = 194
	    Score = 119 (41.9 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
  =>gnl|PID|e1228697 (AJ001494) beta-galactosidase [synthetic construct]
            Length = 1022
	    Score = 119 (41.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
  =>pir||GBEC beta-galactosidase (EC 3.2.1.23) lacZ - Escherichia coli >pdb|1BGM|I
           Escherichia coli >pdb|1BGM|J Escherichia coli >pdb|1BGM|K
           Escherichia coli >pdb|1BGM|L Escherichia coli >pdb|1BGM|M
           Escherichia coli >pdb|1BGM|N Escherichia coli >pdb|1BGM|O
           Escherichia coli >pdb|1BGM|P Escherichia coli >pdb|1BGL|A
           Escherichia coli >pdb|1BGL|B Escherichia coli >pdb|1BGL|C
           Escherichia coli >pdb|1BGL|D Escherichia coli >pdb|1BGL|E
           Escherichia coli >pdb|1BGL|F Escherichia coli >pdb|1BGL|G
           Escherichia coli >pdb|1BGL|H Escherichia coli >gi|1197203 (V00296)
           galactosidase [Escherichia coli]
           Length = 1023
	    Score = 119 (41.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
  =>sp|P00722|BGAL_ECOLI BETA-GALACTOSIDASE (LACTASE) >gi|58035 (X67019) lacZ gene
            from E.coli) gene product [unidentified] >gi|146577 (J01636)
            beta-d-galactosidase [Escherichia coli] >gi|209191 (M29896)
            beta-d-galactosidase [Cloning vector] >gi|434653 (U03993)
            beta-galactosidase [Cloning vector pZ1918] >gi|1051183 (U37692)
            beta-galactosidase [Cloning vector lambda TXF97] >gi|1657540
            (U73857) beta-galactosidase [Escherichia coli] >gi|1786539
            (AE000141) beta-galactosidase [Escherichia coli] >gi|2055398
            (U90436) beta-d-galactosidase [synthetic construct]
            Length = 1024
	    Score = 119 (41.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
  =>gnl|PID|e263423 (Y07631) beta-D-galactosidase [unidentified] >gnl|PID|e263426
            (Y07573) beta-D-galactosidase [unidentified]
            Length = 1024
	    Score = 119 (41.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
  =>gnl|PID|e293774 (Y10545) fused-ccdB [Escherichia coli]
            Length = 217
	    Score = 119 (41.9 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
  =>gnl|PID|e267090 (X98501) fused; toxic gene [unidentified]
            Length = 223
	    Score = 119 (41.9 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
  =>gi|1066306 (U39284) beta-galactosidase [Cloning vector TLF97-1] >gi|1066310
            (U39285) beta-galactosidase [Cloning vector TLF97-2] >gi|1066314
            (U39286) beta-galactosidase [Cloning vector TLF97-3]
            Length = 1015
	    Score = 115 (40.5 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
  =>gi|1000353 (U35112) beta-galactosidase [synthetic construct] >gi|1335927
            (U54828) beta-galactosidase [synthetic construct] >gi|1335933
            (U54829) beta-galactosidase [synthetic construct]
            Length = 1017
	    Score = 115 (40.5 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
  =>gi|557206 (L36850) beta-galactosidase [Cloning vector] >gi|1628643 (U73849)
           beta-galactosidase [synthetic construct]
           Length = 1018
	    Score = 115 (40.5 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
  =>gnl|PID|e1173632 (AJ002684) Beta-galactosidase [Escherichia coli]
            Length = 1020
	    Score = 115 (40.5 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
  =>gi|3142437 (AF062996) beta-galactosidase [Retrotransposon vector pVLBAG]
            >gi|3142440 (AF062997) beta-galactosidase [Retrotransposon vector
            pVLIBAG] >gi|3142443 (AF062998) beta-galactosidase [Retrotransposon
            vector pVLSAIBAG]
            Length = 1020
	    Score = 115 (40.5 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
  =>gi|644832 (U19930) beta-galactosidase [Cloning vector pGlac] >gi|644835
           (U19931) b-galactosidase [Cloning vector pGlacRSV]
           Length = 1021
	    Score = 115 (40.5 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
  =>gi|2190712 (U89933) beta-galactosidase [Cloning vector pBI-G]
            Length = 1030
	    Score = 115 (40.5 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
  =>gi|1245107 (U46489) alpha-galactosidase [Cloning vector placZ]
            Length = 1054
	    Score = 115 (40.5 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
  =>gi|1245111 (U46491) alpha-galactosidase [Cloning vector pFRT2lacZ] >gi|1245113
            (U46492) alpha-galactosidase [Cloning vector pFRT2neo.lacZ]
            Length = 1060
	    Score = 115 (40.5 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
  =>gi|1245109 (U46490) alpha-galactosidase [Cloning vector pFRTlacZ]
            Length = 1072
	    Score = 115 (40.5 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
  =>gi|595694 (U13845) beta-galactosidase [Cloning vector]
           Length = 1085
	    Score = 115 (40.5 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
  =>gi|209122 (M81126) synthetic fusion protein [Artificial gene]
           Length = 1144
	    Score = 115 (40.5 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
  =>gi|208016 (M81125) synthetic fusion protein [Artificial gene]
           Length = 1149
	    Score = 115 (40.5 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
  =>gi|1935050 (U93512) beta-geo [Cloning vector CA1]
            Length = 1293
	    Score = 115 (40.5 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
  =>gi|453624 (X76682) lacZ neomycin phosphotransferase fusion protein
           [unidentified]
           Length = 1311
	    Score = 115 (40.5 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
  =>gi|551430 (X81643) pid:e [Escherichia coli]
           Length = 1046
	    Score = 111 (39.1 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
  =>gi|595768 (U13866) non-functional lacZ alpha peptide [Cloning vector]
           Length = 159
	    Score = 120 (42.2 bits), Expect = 2.3e-06, P = 2.3e-06
  =>gnl|PID|d1014256 (D88215) alpha-peptide of beta-galactosidase [Cloning vector
            pHSG576]
            Length = 71
	    Score = 119 (41.9 bits), Expect = 3.0e-06, P = 3.0e-06
  =>gi|215212 (J02462) beta-galactosidase Z-alpha [Bacteriophage M13]
           Length = 48
	    Score = 119 (41.9 bits), Expect = 3.0e-06, P = 3.0e-06
  =>pir||S05070 hypothetical protein 2 - fission yeast (Schizosaccharomyces pombe)
            (fragment)
            Length = 35
	    Score = 118 (41.5 bits), Expect = 3.9e-06, P = 3.9e-06
  =>gi|3320599 (AF072806) beta-D-galactosidase [Integrational vector pMUTIN2]
            Length = 1019
	    Score = 99 (34.8 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
  =>gi|1185560 (U46196) beta-galactosidase [Cloning vector pDG1661] >gi|1185573
            (U46198) beta-galactosidase [Cloning vector pDG1728] >gi|1185587
            (U46200) beta-galactosidase [Cloning vector pDG1663] >gi|1185604
            (U46202) beta-galactosidase [Cloning vector pDG1729]
            Length = 1019
	    Score = 85 (29.9 bits), Expect = 0.0010, Sum P(2) = 0.0010
  =>gi|2190718 (U89935) beta-galactosidase [Cloning vector pBI-GL]
            Length = 1035
	    Score = 84 (29.6 bits), Expect = 0.0055, Sum P(2) = 0.0055
  =>gi|398099 (L20562) Exp8 [Streptococcus pneumoniae]
           Length = 96
	    Score = 83 (29.2 bits), Expect = 0.029, P = 0.028
  =>pir||I55615 nitric-oxide synthase (EC 1.14.13.39) - rat >gi|854727 (U16359)
            nitric oxide synthase [Rattus norvegicus]
            Length = 50
	    Score = 81 (28.5 bits), Expect = 0.048, P = 0.047
  =>bbs|140380 (S67119) BST/beta-Gal fusion protein(somatotropin, BST,
            beta-galactosidase, beta-Gal) [Escherichia coli, LBB84, plasmid
            pXT107, IS10L/R-1, Peptide PlasmidTransposonInsertionMutant, 87 aa]
            [Escherichia coli]
            Length = 87
	    Score = 81 (28.5 bits), Expect = 0.048, P = 0.047

>CcruzaQ_836 has the following protein neighbors:
Sequence,   
  =>gi|595775 (U13869) lacZ alpha peptide [Cloning vector]
           Length = 179
	    Score = 118 (41.5 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
  =>gi|595780 (U13871) lacZ alpha peptide [Cloning vector]
           Length = 187
	    Score = 118 (41.5 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
  =>gi|499099 (U09942) beta-galactosidase alpha-peptide [Cloning vector pDB31]
           Length = 106
	    Score = 110 (38.7 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
  =>gi|529324 (U12540) beta-galactosidase alpha peptide [Cloning vector pBin19]
           Length = 107
	    Score = 110 (38.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
  =>gi|455369 (M19265) lacZ' [Cloning vector]
           Length = 99
	    Score = 110 (38.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
  =>gnl|PID|d1010551 (D63843) modified alpha peptide of E. coli beta-galactosidase
            [Cloning vector pKF299] >gnl|PID|d1010559 (D63847) modified alpha
            peptide of E. coli beta-galactosidase [Cloning vector pKF19k]
            Length = 102
	    Score = 110 (38.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
  =>gnl|PID|d1006774 (D29831) beta-galactosidase alpha-peptide [Cloning vector
            pKF19c] >gnl|PID|d1006766 (D29827) beta-galactosidase alpha-peptide
            [Cloning vector pKF399]
            Length = 76
	    Score = 110 (38.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
  =>gi|1016680 (U30830) beta-galactosidase [Cloning vector pFD288]
            Length = 95
	    Score = 110 (38.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
  =>gi|1658409 (U73899) beta-galactosidase [Cloning vector pJB3]
            Length = 76
	    Score = 110 (38.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
  =>gi|2343029 (U75322) beta-galactosidase [Cloning vector pJB3Cm6] >gi|2343034
            (U75323) beta-galactosidase [Cloning vector pJB3Km1] >gi|2343040
            (U75324) beta-galactosidase [Cloning vector pJB3Tc20] >gi|2343045
            (U75325) beta-galactosidase [Cloning vector pJB321]
            Length = 79
	    Score = 110 (38.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
  =>gi|2981187 (AF049063) lacZ alpha peptide [Expression vector pYZ1N] >gi|3136318
            (AF064066) lacZ alpha peptide [Expression vector pYZ41N]
            >gi|3136322 (AF064067) lacZ alpha peptide [Expression vector
            pYZ81N]
            Length = 79
	    Score = 110 (38.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
  =>gi|2981192 (AF049064) lacZ alpha peptide [Expression vector pYZ3X-GFP]
            Length = 80
	    Score = 110 (38.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
  =>gi|392881 (U00800) lacZ alpha peptide [Escherichia coli]
           Length = 94
	    Score = 110 (38.7 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
  =>gi|312368 (X70493) lacZ [Bacteriophage M13mp18]
           Length = 102
	    Score = 110 (38.7 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
  =>gi|434648 (U03991) beta-galactosidase alpha peptide [Cloning vector pUC1918]
           Length = 125
	    Score = 110 (38.7 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
  =>gi|460935 (U07164) LacZ alpha peptide [Cloning vector pUCP18] >gi|460939
           (U07165) LacZ alpha peptide [Cloning vector pUCP20] >gi|460943
           (U07166) LacZ alpha peptide [Cloning vector pUCP22] >gi|460948
           (U07167) LacZ alpha peptide [Cloning vector pUCP24] >gi|460952
           (U07168) LacZ alpha peptide [Cloning vector pUCP26] >gi|1144476
           (U33750) beta galactosidase alpha peptide [Cloning vector pUCP20T]
           >gi|1144481 (U33751) beta galactosidase alpha peptide [Cloning
           vector pUCP28T] >gi|1144485 (U33752) beta galactosidase alpha
           peptide [Cloning vector pUCP30T]
           Length = 84
	    Score = 110 (38.7 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
  =>gi|208131 (M77169) beta-galactosidase alpha-peptide [Cloning vector]
           >gi|3132861 (U90554) beta-galactosidase alpha peptide [Shuttle
           vector pJIR1456] >gi|3132864 (U90555) beta-galactosidase alpha
           peptide [Shuttle vector pJIR1457]
           Length = 107
	    Score = 110 (38.7 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
  =>gi|209095 (M21875) beta-galactosidase alpha-chain [Cloning vector]
           Length = 87
	    Score = 110 (38.7 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
  =>gi|603174 (U17499) lac alpha peptide [Cloning vector pUCSce]
           Length = 107
	    Score = 110 (38.7 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
  =>gi|603177 (U17500) lac alpha peptide [Cloning vector pEX100T]
           Length = 94
	    Score = 110 (38.7 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
  =>gi|975873 (U32311) beta-galactosidase alpha complemention peptide [Cloning
           vector pOTSf1Blu]
           Length = 67
	    Score = 110 (38.7 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
  =>gi|993048 (U33186) beta-galactosidase alpha peptide [Cloning vector pSUM36]
           Length = 56
	    Score = 110 (38.7 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
  =>gi|2218144 (AF004910) lac alpha peptide [Cloning vector pEX18T] >gi|2961142
            (AF047518) lac alpha peptide [Cloning vector pEX18Gm] >gi|2961146
            (AF047519) lac alpha peptide [Cloning vector pEX18Tc]
            Length = 94
	    Score = 110 (38.7 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
  =>gnl|PID|d1010547 (D63841) modified alpha peptide of E. coli beta-galactosidase
            [Cloning vector pKF297] >gnl|PID|d1010555 (D63845) modified alpha
            peptide of E. coli beta-galactosidase [Cloning vector pKF17k]
            Length = 106
	    Score = 110 (38.7 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
  =>gnl|PID|d1006770 (D29829) beta-galactosidase alpha-peptide [Cloning vector
            pKF17c] >gnl|PID|d1006762 (D29825) beta-galactosidase alpha-peptide
            [Cloning vector pKF397]
            Length = 80
	    Score = 110 (38.7 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
  =>gnl|PID|d1010545 (D63840) modified alpha peptide of E. coli beta-galactosidase
            [Cloning vector pKF296] >gnl|PID|d1010553 (D63844) modified alpha
            peptide of E. coli beta-galactosidase [Cloning vector pKF16k]
            Length = 106
	    Score = 110 (38.7 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
  =>pir||I60307 beta-galactosidase, alpha peptide - Escherichia coli
            >gnl|PID|d1006768 (D29828) beta-galactosidase alpha-peptide
            [Cloning vector pKF16c] >gnl|PID|d1006760 (D29824)
            beta-galactosidase alpha-peptide [Cloning vector pKF396]
            Length = 80
	    Score = 110 (38.7 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
  =>gi|1673616 (U76715) LacZ [Cloning vector pBRkanf4]
            Length = 94
	    Score = 110 (38.7 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
  =>gnl|PID|e350491 (Y14835) beta-galactosidase [Phagemid cloning vector pTZ19R]
            Length = 88
	    Score = 110 (38.7 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
  =>gi|1236970 (U50331) beta galactosidase alpha complement [Cloning vector
            pBRkanf1]
            Length = 74
	    Score = 110 (38.7 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
  =>gi|531829 (U12390) beta-galactosidase alpha peptide [cloning vector pSport1]
           Length = 114
	    Score = 110 (38.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
  =>gi|825756 (U12391) beta-galactosidase alpha peptide [Cloning vector pSport2]
           Length = 114
	    Score = 110 (38.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
  =>gi|773414 (U23751) beta galactosidase [Cloning vector pBBR1MCS-2] >gi|833819
           (U25059) LacZ alpha peptide [Cloning vector pBBR1MCS-3] >gi|833823
           (U25060) LacZ alpha peptide [Cloning vector pBBR1MCS-4] >gi|833827
           (U25061) LacZ alpha peptide [Cloning vector pBBR1MCS-5]
           Length = 121
	    Score = 110 (38.7 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
  =>gnl|PID|e350489 (Y14837) beta-galactosidase [Cloning vector pUC57]
            Length = 115
	    Score = 110 (38.7 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
  =>gi|146581 (M74750) LacZ-alpha peptide [Escherichia coli] >gi|450838 (U04894)
           beta-galactosidase alpha peptide [Cloning vector pKSM711] >gi|450841
           (U04895) beta-galactosidase alpha peptide [Cloning vector pKSM713]
           >gi|450845 (U04896) beta-galactosidase alpha peptide [Cloning vector
           pKSM715]
           Length = 90
	    Score = 110 (38.7 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
  =>gi|41904 (X16313) lacZ 5'-region [Escherichia coli]
          Length = 147
	    Score = 110 (38.7 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
  =>gi|403937 (U01668) beta-galactosidase fragment [Phagemid cloning vector pKSS]
           Length = 53
	    Score = 110 (38.7 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
  =>gi|208408 (M35437) beta-galactosidase [Cloning vector]
           Length = 51
	    Score = 110 (38.7 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
  =>gi|455368 (M13163) lacZ' [Cloning vector]
           Length = 92
	    Score = 110 (38.7 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
  =>gi|847865 (U26464) beta-galactosidase alpha [Cloning vector pZC320]
           Length = 100
	    Score = 110 (38.7 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
  =>gi|995518 (X91197) pid:e198830 [Escherichia coli]
           Length = 81
	    Score = 110 (38.7 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
  =>gnl|PID|d1014256 (D88215) alpha-peptide of beta-galactosidase [Cloning vector
            pHSG576]
            Length = 71
	    Score = 110 (38.7 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
  =>gi|1132426 (U39779) beta-galactosidase alpha polypeptide [Cloning vector
            pTriplEx]
            Length = 139
	    Score = 110 (38.7 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
  =>gi|2353792 (AF016541) beta-galactosidase alpha peptide [Cloning vector pUC-JK]
            Length = 108
	    Score = 110 (38.7 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
  =>gnl|PID|e1314506 (AJ007829) lacZ' [Cloning vector pGreen]
            Length = 120
	    Score = 110 (38.7 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
  =>gi|2501755 (U66885) lacZ-alpha [bacteriophage lambda] >gi|2501802 (U87107)
            beta-galactosidase [Cloning vector pAL-F]
            Length = 154
	    Score = 110 (38.7 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
  =>gi|348687 (L02937) beta-galactosidase alpha-peptide [Clostridium perfringens]
           >gi|348688 (L02938) beta-galactosidase alpha-peptide [Clostridium
           perfringens]
           Length = 53
	    Score = 110 (38.7 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
  =>gi|208243 (M34519) b-galactosidase [Cloning vector]
           Length = 60
	    Score = 110 (38.7 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
  =>gnl|PID|d1010549 (D63842) modified alpha peptide of E. coli beta-galactosidase
            [Cloning vector pKF298] >gnl|PID|d1010557 (D63846) modified alpha
            peptide of E. coli beta-galactosidase [Cloning vector pKF18k]
            Length = 102
	    Score = 110 (38.7 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
  =>gnl|PID|d1006772 (D29830) beta-galactosidase alpha-peptide [Cloning vector
            pKF18c] >gnl|PID|d1006764 (D29826) beta-galactosidase alpha-peptide
            [Cloning vector pKF398]
            Length = 76
	    Score = 110 (38.7 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
  =>gi|215212 (J02462) beta-galactosidase Z-alpha [Bacteriophage M13]
           Length = 48
	    Score = 108 (38.0 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
  =>gi|2071947 (U84006) beta-galactosidase [Expression vector pBSII-LUCINT]
            Length = 69
	    Score = 110 (38.7 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
  =>gi|994736 (M18327) LacOPZ-alpha peptide from pUC9; putative [cloning vectors]
           >gi|994738 (M18328) LacOPZ-alpha peptide from pUC9; putative
           [cloning vectors] >gi|994740 (M18329) LacOPZ-alpha peptide from
           pUC9; putative [cloning vectors]
           Length = 93
	    Score = 104 (36.6 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
  =>gi|567890 (L37352) beta-galactosidase-complementation protein [Cloning vector]
           Length = 157
	    Score = 110 (38.7 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
  =>gi|2190718 (U89935) beta-galactosidase [Cloning vector pBI-GL]
            Length = 1035
	    Score = 172 (60.5 bits), Expect = 2.3e-09, P = 2.3e-09
  =>gi|567893 (L37382) beta-galactosidase-complementation protein [Cloning vector]
           Length = 158
	    Score = 110 (38.7 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
  =>gnl|PID|e350493 (Y14836) beta-galactosidase [Phagemid cloning vector pTZ19U]
            Length = 158
	    Score = 110 (38.7 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
  =>gi|208984 (M88655) Modified lacZ' [Cloning vector]
           Length = 166
	    Score = 110 (38.7 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
  =>gi|209004 (M36415) pfxblue fusion protein [Artificial gene]
           Length = 206
	    Score = 110 (38.7 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
  =>gi|208991 (M74186) protein A signal fusion protein [Cloning vector]
           Length = 241
	    Score = 110 (38.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
  =>gi|987050 (X65335) lacZ gene product [unidentified cloning vector]
           Length = 209
	    Score = 110 (38.7 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
  =>gnl|PID|e293774 (Y10545) fused-ccdB [Escherichia coli]
            Length = 217
	    Score = 110 (38.7 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
  =>gnl|PID|e267089 (X98500) fused; toxic gene [unidentified]
            Length = 194
	    Score = 110 (38.7 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
  =>gnl|PID|e267090 (X98501) fused; toxic gene [unidentified]
            Length = 223
	    Score = 110 (38.7 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
  =>gi|1332396 (M74187) ZZ:beta-Gal' IgG-binding fusion protein [unidentified
            cloning vector]
            Length = 215
	    Score = 110 (38.7 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
  =>gi|2623823 (AF031088) maltose binding protein-lacZ alpha peptide fusion
            protein precursor [Shuttle vector pMAL-pIII]
            Length = 482
	    Score = 110 (38.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
  =>gi|2654021 (AF031813) maltose binding protein-lacZ-alpha fusion protein
            [Expression vector pMal-X]
            Length = 496
	    Score = 110 (38.7 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
  =>gi|1546041 (U64693) beta-galactosidase [Cloning vector pRSQ2-LEU2] >gi|1546046
            (U64694) beta-galactosidase [Cloning vector pRSQ2-URA3]
            Length = 204
	    Score = 110 (38.7 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
  =>gnl|PID|e263423 (Y07631) beta-D-galactosidase [unidentified] >gnl|PID|e263426
            (Y07573) beta-D-galactosidase [unidentified]
            Length = 1024
	    Score = 110 (38.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
  =>gi|209078 (M37847) alpha-peptide [Cloning vector]
           Length = 65
	    Score = 113 (39.8 bits), Expect = 1.5e-05, P = 1.5e-05
  =>gi|595768 (U13866) non-functional lacZ alpha peptide [Cloning vector]
           Length = 159
	    Score = 115 (40.5 bits), Expect = 2.7e-05, P = 2.7e-05
  =>gnl|PID|e1228697 (AJ001494) beta-galactosidase [synthetic construct]
            Length = 1022
	    Score = 110 (38.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
  =>pir||GBEC beta-galactosidase (EC 3.2.1.23) lacZ - Escherichia coli >pdb|1BGM|I
           Escherichia coli >pdb|1BGM|J Escherichia coli >pdb|1BGM|K
           Escherichia coli >pdb|1BGM|L Escherichia coli >pdb|1BGM|M
           Escherichia coli >pdb|1BGM|N Escherichia coli >pdb|1BGM|O
           Escherichia coli >pdb|1BGM|P Escherichia coli >pdb|1BGL|A
           Escherichia coli >pdb|1BGL|B Escherichia coli >pdb|1BGL|C
           Escherichia coli >pdb|1BGL|D Escherichia coli >pdb|1BGL|E
           Escherichia coli >pdb|1BGL|F Escherichia coli >pdb|1BGL|G
           Escherichia coli >pdb|1BGL|H Escherichia coli >gi|1197203 (V00296)
           galactosidase [Escherichia coli]
           Length = 1023
	    Score = 110 (38.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
  =>sp|P00722|BGAL_ECOLI BETA-GALACTOSIDASE (LACTASE) >gi|58035 (X67019) lacZ gene
            from E.coli) gene product [unidentified] >gi|146577 (J01636)
            beta-d-galactosidase [Escherichia coli] >gi|209191 (M29896)
            beta-d-galactosidase [Cloning vector] >gi|434653 (U03993)
            beta-galactosidase [Cloning vector pZ1918] >gi|1051183 (U37692)
            beta-galactosidase [Cloning vector lambda TXF97] >gi|1657540
            (U73857) beta-galactosidase [Escherichia coli] >gi|1786539
            (AE000141) beta-galactosidase [Escherichia coli] >gi|2055398
            (U90436) beta-d-galactosidase [synthetic construct]
            Length = 1024
	    Score = 110 (38.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
  =>pir||S05070 hypothetical protein 2 - fission yeast (Schizosaccharomyces pombe)
            (fragment)
            Length = 35
	    Score = 97 (34.1 bits), Expect = 0.00087, P = 0.00087
  =>gi|2190712 (U89933) beta-galactosidase [Cloning vector pBI-G]
            Length = 1030
	    Score = 110 (38.7 bits), Expect = 0.0011, Sum P(2) = 0.0011
  =>gi|1066306 (U39284) beta-galactosidase [Cloning vector TLF97-1] >gi|1066310
            (U39285) beta-galactosidase [Cloning vector TLF97-2] >gi|1066314
            (U39286) beta-galactosidase [Cloning vector TLF97-3]
            Length = 1015
	    Score = 110 (38.7 bits), Expect = 0.0013, Sum P(2) = 0.0013
  =>gi|1000353 (U35112) beta-galactosidase [synthetic construct] >gi|1335927
            (U54828) beta-galactosidase [synthetic construct] >gi|1335933
            (U54829) beta-galactosidase [synthetic construct]
            Length = 1017
	    Score = 110 (38.7 bits), Expect = 0.0013, Sum P(2) = 0.0013
  =>gi|557206 (L36850) beta-galactosidase [Cloning vector] >gi|1628643 (U73849)
           beta-galactosidase [synthetic construct]
           Length = 1018
	    Score = 110 (38.7 bits), Expect = 0.0013, Sum P(2) = 0.0013
  =>gnl|PID|e1173632 (AJ002684) Beta-galactosidase [Escherichia coli]
            Length = 1020
	    Score = 110 (38.7 bits), Expect = 0.0013, Sum P(2) = 0.0013
  =>gi|3142437 (AF062996) beta-galactosidase [Retrotransposon vector pVLBAG]
            >gi|3142440 (AF062997) beta-galactosidase [Retrotransposon vector
            pVLIBAG] >gi|3142443 (AF062998) beta-galactosidase [Retrotransposon
            vector pVLSAIBAG]
            Length = 1020
	    Score = 110 (38.7 bits), Expect = 0.0013, Sum P(2) = 0.0013
  =>gi|644832 (U19930) beta-galactosidase [Cloning vector pGlac] >gi|644835
           (U19931) b-galactosidase [Cloning vector pGlacRSV]
           Length = 1021
	    Score = 110 (38.7 bits), Expect = 0.0013, Sum P(2) = 0.0013
  =>gi|1245107 (U46489) alpha-galactosidase [Cloning vector placZ]
            Length = 1054
	    Score = 110 (38.7 bits), Expect = 0.0014, Sum P(2) = 0.0014
  =>gi|1245111 (U46491) alpha-galactosidase [Cloning vector pFRT2lacZ] >gi|1245113
            (U46492) alpha-galactosidase [Cloning vector pFRT2neo.lacZ]
            Length = 1060
	    Score = 110 (38.7 bits), Expect = 0.0014, Sum P(2) = 0.0014
  =>gi|1245109 (U46490) alpha-galactosidase [Cloning vector pFRTlacZ]
            Length = 1072
	    Score = 110 (38.7 bits), Expect = 0.0015, Sum P(2) = 0.0015
  =>gi|595694 (U13845) beta-galactosidase [Cloning vector]
           Length = 1085
	    Score = 110 (38.7 bits), Expect = 0.0015, Sum P(2) = 0.0015
  =>gi|209122 (M81126) synthetic fusion protein [Artificial gene]
           Length = 1144
	    Score = 110 (38.7 bits), Expect = 0.0017, Sum P(2) = 0.0017
  =>gi|208016 (M81125) synthetic fusion protein [Artificial gene]
           Length = 1149
	    Score = 110 (38.7 bits), Expect = 0.0017, Sum P(2) = 0.0017
  =>gi|1935050 (U93512) beta-geo [Cloning vector CA1]
            Length = 1293
	    Score = 110 (38.7 bits), Expect = 0.0022, Sum P(2) = 0.0022
  =>gi|453624 (X76682) lacZ neomycin phosphotransferase fusion protein
           [unidentified]
           Length = 1311
	    Score = 110 (38.7 bits), Expect = 0.0023, Sum P(2) = 0.0023
  =>gi|398099 (L20562) Exp8 [Streptococcus pneumoniae]
           Length = 96
	    Score = 68 (23.9 bits), Expect = 0.0024, Sum P(2) = 0.0024
  =>gi|551430 (X81643) pid:e [Escherichia coli]
           Length = 1046
	    Score = 110 (38.7 bits), Expect = 0.0036, Sum P(2) = 0.0036
  =>gi|1185560 (U46196) beta-galactosidase [Cloning vector pDG1661] >gi|1185573
            (U46198) beta-galactosidase [Cloning vector pDG1728] >gi|1185587
            (U46200) beta-galactosidase [Cloning vector pDG1663] >gi|1185604
            (U46202) beta-galactosidase [Cloning vector pDG1729]
            Length = 1019
	    Score = 111 (39.1 bits), Expect = 0.022, P = 0.021
  =>gi|3320599 (AF072806) beta-D-galactosidase [Integrational vector pMUTIN2]
            Length = 1019
	    Score = 111 (39.1 bits), Expect = 0.022, P = 0.021

>CcruzaQ_2819 has the following protein neighbors:
Sequence,   
  =>gi|2623597 (AF027872) mucin-like protein [Trypanosoma cruzi]
            Length = 122
	    Score = 220 (77.4 bits), Expect = 1.9e-17, P = 1.9e-17
  =>gi|3064150 (AF036410) mucin-like protein [Trypanosoma cruzi]
            Length = 133
	    Score = 209 (73.6 bits), Expect = 2.8e-16, P = 2.8e-16
  =>gi|3064178 (AF036425) mucin-like protein [Trypanosoma cruzi]
            Length = 127
	    Score = 208 (73.2 bits), Expect = 3.5e-16, P = 3.5e-16
  =>gi|3064214 (AF036450) mucin-like protein [Trypanosoma cruzi]
            Length = 115
	    Score = 206 (72.5 bits), Expect = 5.7e-16, P = 5.7e-16
  =>gi|3064156 (AF036413) mucin-like protein [Trypanosoma cruzi]
            Length = 125
	    Score = 204 (71.8 bits), Expect = 9.3e-16, P = 9.3e-16
  =>gi|3064148 (AF036409) mucin-like protein [Trypanosoma cruzi]
            Length = 126
	    Score = 202 (71.1 bits), Expect = 1.5e-15, P = 1.5e-15
  =>gi|1732051 (U59482) mucin-like apoprotein [Trypanosoma cruzi]
            Length = 139
	    Score = 200 (70.4 bits), Expect = 2.5e-15, P = 2.5e-15
  =>gi|3064160 (AF036415) mucin-like protein [Trypanosoma cruzi]
            Length = 123
	    Score = 199 (70.1 bits), Expect = 3.2e-15, P = 3.2e-15
  =>gi|3064235 (AF036462) mucin-like protein [Trypanosoma cruzi]
            Length = 209
	    Score = 159 (56.0 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
  =>gi|3068547 (AF036427) mucin-like protein [Trypanosoma cruzi]
            Length = 139
	    Score = 197 (69.3 bits), Expect = 5.2e-15, P = 5.2e-15
  =>gi|1732053 (U61532) MUC.TM-1 [Trypanosoma cruzi]
            Length = 123
	    Score = 197 (69.3 bits), Expect = 5.2e-15, P = 5.2e-15
  =>gi|2623601 (AF027874) mucin-like protein [Trypanosoma cruzi]
            Length = 143
	    Score = 196 (69.0 bits), Expect = 6.6e-15, P = 6.6e-15
  =>gi|2623595 (AF027871) mucin-like protein [Trypanosoma cruzi]
            Length = 123
	    Score = 196 (69.0 bits), Expect = 6.6e-15, P = 6.6e-15
  =>gi|1732057 (U62530) MUC.CL-1 [Trypanosoma cruzi]
            Length = 128
	    Score = 195 (68.6 bits), Expect = 8.4e-15, P = 8.4e-15
  =>gi|3064231 (AF036460) mucin-like protein [Trypanosoma cruzi]
            Length = 119
	    Score = 195 (68.6 bits), Expect = 8.4e-15, P = 8.4e-15
  =>gi|3064226 (AF036456) mucin-like protein [Trypanosoma cruzi]
            Length = 113
	    Score = 194 (68.3 bits), Expect = 1.1e-14, P = 1.1e-14
  =>gi|3064167 (AF036419) mucin-like protein [Trypanosoma cruzi]
            Length = 94
	    Score = 193 (67.9 bits), Expect = 1.4e-14, P = 1.4e-14
  =>gi|3064202 (AF036441) mucin-like protein [Trypanosoma cruzi]
            Length = 147
	    Score = 191 (67.2 bits), Expect = 2.2e-14, P = 2.2e-14
  =>gi|3064176 (AF036424) mucin-like protein [Trypanosoma cruzi]
            Length = 119
	    Score = 191 (67.2 bits), Expect = 2.2e-14, P = 2.2e-14
  =>gi|3064173 (AF036422) mucin-like protein [Trypanosoma cruzi]
            Length = 102
	    Score = 189 (66.5 bits), Expect = 3.6e-14, P = 3.6e-14
  =>gi|3064144 (AF036407) mucin-like protein [Trypanosoma cruzi]
            Length = 148
	    Score = 188 (66.2 bits), Expect = 4.6e-14, P = 4.6e-14
  =>gi|2623599 (AF027873) mucin-like protein [Trypanosoma cruzi]
            Length = 136
	    Score = 184 (64.8 bits), Expect = 1.2e-13, P = 1.2e-13
  =>gi|914966 (L20809) mucin-like protein [Trypanosoma cruzi] >gi|1732055 (U61533)
           MUC.T0-1 [Trypanosoma cruzi] >prf||2124391E mucin-like protein
           [Trypanosoma cruzi]
           Length = 142
	    Score = 179 (63.0 bits), Expect = 4.2e-13, P = 4.2e-13
  =>gi|3064241 (AF036465) mucin-like protein [Trypanosoma cruzi]
            Length = 98
	    Score = 176 (62.0 bits), Expect = 9.1e-13, P = 9.1e-13
  =>gi|1019435 (U32447) mucin-like protein [Trypanosoma cruzi]
            Length = 197
	    Score = 174 (61.3 bits), Expect = 1.6e-12, P = 1.6e-12
  =>gi|1019433 (U32346) mucin-like protein; Method: conceptual translation
            supplied by author. [Trypanosoma cruzi] >prf||2124391B mucin-like
            protein [Trypanosoma cruzi]
            Length = 165
	    Score = 174 (61.3 bits), Expect = 1.6e-12, P = 1.6e-12
  =>gi|3064237 (AF036463) mucin-like protein [Trypanosoma cruzi]
            Length = 114
	    Score = 171 (60.2 bits), Expect = 3.7e-12, P = 3.7e-12
  =>gi|3064163 (AF036417) mucin-like protein [Trypanosoma cruzi]
            Length = 84
	    Score = 170 (59.8 bits), Expect = 4.8e-12, P = 4.8e-12
  =>gi|3064222 (AF036454) mucin-like protein [Trypanosoma cruzi]
            Length = 107
	    Score = 170 (59.8 bits), Expect = 4.8e-12, P = 4.8e-12
  =>gi|2623608 (AF027878) mucin-like protein [Trypanosoma cruzi] >gi|2623610
            (AF027879) mucin-like protein [Trypanosoma cruzi]
            Length = 163
	    Score = 168 (59.1 bits), Expect = 8.4e-12, P = 8.4e-12
  =>gi|3064194 (AF036436) mucin-like protein [Trypanosoma cruzi]
            Length = 86
	    Score = 166 (58.4 bits), Expect = 1.4e-11, P = 1.4e-11
  =>gi|3064146 (AF036408) mucin-like protein [Trypanosoma cruzi]
            Length = 175
	    Score = 165 (58.1 bits), Expect = 1.9e-11, P = 1.9e-11
  =>gi|3064152 (AF036411) mucin-like protein [Trypanosoma cruzi]
            Length = 74
	    Score = 149 (52.5 bits), Expect = 1.4e-09, P = 1.4e-09
  =>gi|3064158 (AF036414) mucin-like protein [Trypanosoma cruzi]
            Length = 95
	    Score = 146 (51.4 bits), Expect = 3.0e-09, P = 3.0e-09
  =>gi|3064239 (AF036464) mucin-like protein [Trypanosoma cruzi]
            Length = 186
	    Score = 146 (51.4 bits), Expect = 3.0e-09, P = 3.0e-09
  =>gi|1019443 (U32572) mucin [Trypanosoma cruzi] >prf||2124391A mucin-like
            protein [Trypanosoma cruzi]
            Length = 78
	    Score = 145 (51.0 bits), Expect = 3.9e-09, P = 3.9e-09
  =>gi|3064154 (AF036412) mucin-like protein [Trypanosoma cruzi]
            Length = 189
	    Score = 139 (48.9 bits), Expect = 1.8e-08, P = 1.8e-08
  =>gi|1236661 (U50160) mucin-like glycoprotein [Trypanosoma cruzi]
            Length = 199
	    Score = 143 (50.3 bits), Expect = 3.3e-08, P = 3.3e-08
  =>gi|3064182 (AF036428) mucin-like protein [Trypanosoma cruzi]
            Length = 92
	    Score = 136 (47.9 bits), Expect = 4.0e-08, P = 4.0e-08
  =>gi|1019437 (U32448) mucin-like protein [Trypanosoma cruzi] >prf||2124391C
            mucin-like protein [Trypanosoma cruzi]
            Length = 207
	    Score = 140 (49.3 bits), Expect = 2.4e-07, P = 2.4e-07
  =>gi|3064199 (AF036439) mucin-like protein [Trypanosoma cruzi]
            Length = 64
	    Score = 129 (45.4 bits), Expect = 2.5e-07, P = 2.5e-07
  =>gi|2623606 (AF027877) mucin-like protein [Trypanosoma cruzi]
            Length = 215
	    Score = 141 (49.6 bits), Expect = 2.5e-07, P = 2.5e-07
  =>pir||A25494 hydroxyproline-rich glycoprotein - tomato (fragment) >gi|170454
            (M11759) cell wall hydroxyproline-rich glycoprotein [Lycopersicon
            esculentum] >prf||1111324A glycoprotein,Hyp rich [Lycopersicon
            esculentum]
            Length = 93
	    Score = 103 (36.3 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
  =>gi|2196910 (U83169) polythreonine protein