Blat Alignment ID Query Source Id Number of Spans 5 Prime Gap (size) > 10bp 3 Prime Gap (size) > 10bp
Internal Gap1..N > 5bp
(query gap size)[Genomic Interval](genomic gap size)
*note1: "--" for no 5 or 3 prime query gap, "1" for query gap falling into genomic sequence gap, "0" for query gap not falling into genomic sequence gap
*note2: for 5 or 3 prime query gap, look 10 times gapsize away on genomic sequence for genomic sequence gaps
inconsistent alignments for NM_024313-containing DoTS assembly
19466527 NM_024313 8 (21) 0 (19) 0  
inconsistent alignments for NM_024053-containing DoTS assembly
19415371 NM_024053 6 (17) 0 (7) --  
inconsistent alignments for NM_022775-containing DoTS assembly
19415497 NM_022775 15 (127) 0 (23) 0  
inconsistent alignments for NM_022141-containing DoTS assembly
19468635 NM_022141 17 (209) 0 (0) --  
inconsistent alignments for NM_022044-containing DoTS assembly
19525950 NM_022044 3 (0) -- (24) 0  
inconsistent alignments for NM_021126-containing DoTS assembly
19416551 NM_021126 3 (6) -- (20) 0  
inconsistent alignments for NM_019601-containing DoTS assembly
19458373 NM_019601 19 (1) -- (29) 0  
inconsistent alignments for NM_019106-containing DoTS assembly
19525362 NM_019106 23 (0) -- (3) -- (15)[16](0) 0 : (8)[10](0) 0 : (10)[12](0) 0
inconsistent alignments for NM_018957-containing DoTS assembly
19524712 NM_018957 27 (2) -- (0) -- (26)[29](0) 0 : (10)[13](0) 0 : (41)[1529](0) 0
inconsistent alignments for NM_017903-containing DoTS assembly
19416496 NM_017903 13 (1) -- (112) 0 (54)[65](0) 0 : (14)[0](0) 0
inconsistent alignments for NM_017701-containing DoTS assembly
19528776 NM_017701 13 (0) -- (168) 0  
inconsistent alignments for NM_017436-containing DoTS assembly
19525504 NM_017436 2 (78) 0 (22) 0  
inconsistent alignments for NM_016498-containing DoTS assembly
19416537 NM_016498 4 (0) -- (46) 0  
inconsistent alignments for NM_016431-containing DoTS assembly
19537458 NM_016431 18 (0) -- (0) -- (15)[20](0) 0
inconsistent alignments for NM_016426-containing DoTS assembly
19534392 NM_016426 14 (26) 0 (1) --  
inconsistent alignments for NM_016418-containing DoTS assembly
19456884 NM_016418 1 (456) 0 (59) 0  
inconsistent alignments for NM_016272-containing DoTS assembly
19415385 NM_016272 1 (0) -- (32) 0  
inconsistent alignments for NM_016091-containing DoTS assembly
19416501 NM_016091 13 (476) 1 (35) 0  
inconsistent alignments for NM_015889-containing DoTS assembly
19526968 NM_015889 18 (10) -- (33) 0  
inconsistent alignments for NM_015705-containing DoTS assembly
19526655 NM_015705 21 (0) -- (40) 0  
inconsistent alignments for NM_015703-containing DoTS assembly
19527505 NM_015703 16 (186) 0 (0) -- (112)[3882](0) 0
inconsistent alignments for NM_015367-containing DoTS assembly
19526287 NM_015367 7 (0) -- (47) 0  
inconsistent alignments for NM_014876-containing DoTS assembly
19531540 NM_014876 4 (36) 0 (15) 0  
inconsistent alignments for NM_014634-containing DoTS assembly
19407875 NM_014634 8 (1) -- (35) 0  
inconsistent alignments for NM_014549-containing DoTS assembly
19416127 NM_014549 20 (1) -- (8) -- (22)[21](0) 0 : (8)[10](0) 0 : (9)[0](0) 0
19416128 NM_014549 13 (7) -- (601) 0 (22)[21](0) 0 : (8)[10](0) 0 : (2469)[75647](189) 1 : (11)[10](0) 0 : (10)[9](0) 0
19416133 NM_014549 17 (1) -- (8) -- (8)[10](0) 0 : (22)[21](0) 0
19416126 NM_014549 19 (1) -- (8) -- (8)[9](0) 0 : (22)[21](0) 0 : (8)[10](0) 0
19416135 NM_014549 13 (52) 0 (1006) 0 (15)[0](0) 0 : (8)[6](0) 0 : (8)[10](0) 0 : (27)[26](0) 0
19416125 NM_014549 13 (1) -- (8) -- (9)[8](0) 0 : (8)[10](0) 0
19416134 NM_014549 12 (1) -- (1006) 1 (8)[10](0) 0 : (9)[8](0) 0
inconsistent alignments for NM_014509-containing DoTS assembly
19527505 NM_014509 16 (186) 0 (0) -- (112)[3882](0) 0
inconsistent alignments for NM_014351-containing DoTS assembly
19463572 NM_014351 9 (8) -- (17) 0 (6)[0](0) 0
inconsistent alignments for NM_014348-containing DoTS assembly
19416127 NM_014348 20 (1) -- (8) -- (22)[21](0) 0 : (8)[10](0) 0 : (9)[0](0) 0
19416128 NM_014348 13 (7) -- (601) 0 (22)[21](0) 0 : (8)[10](0) 0 : (2469)[75647](189) 1 : (11)[10](0) 0 : (10)[9](0) 0
19416133 NM_014348 17 (1) -- (8) -- (8)[10](0) 0 : (22)[21](0) 0
19416126 NM_014348 19 (1) -- (8) -- (8)[9](0) 0 : (22)[21](0) 0 : (8)[10](0) 0
19416135 NM_014348 13 (52) 0 (1006) 0 (15)[0](0) 0 : (8)[6](0) 0 : (8)[10](0) 0 : (27)[26](0) 0
19416125 NM_014348 13 (1) -- (8) -- (9)[8](0) 0 : (8)[10](0) 0
19416134 NM_014348 12 (1) -- (1006) 1 (8)[10](0) 0 : (9)[8](0) 0
inconsistent alignments for NM_014310-containing DoTS assembly
19524756 NM_014310 4 (11) 0 (25) 0  
inconsistent alignments for NM_014309-containing DoTS assembly
19466996 NM_014309 14 (61) 0 (92) 0  
inconsistent alignments for NM_014306-containing DoTS assembly
19416550 NM_014306 12 (42) 0 (25) 0  
inconsistent alignments for NM_014303-containing DoTS assembly
19527153 NM_014303 15 (12) 0 (22) 0  
inconsistent alignments for NM_014291-containing DoTS assembly
19525298 NM_014291 9 (1) -- (46) 0  
inconsistent alignments for NM_014248-containing DoTS assembly
19468599 NM_014248 5 (1) -- (82) 0  
inconsistent alignments for NM_013412-containing DoTS assembly
19529896 NM_013412 11 (4) -- (0) -- (14)[16](0) 0
inconsistent alignments for NM_013387-containing DoTS assembly
19416429 NM_013387 2 (5) -- (218) 0  
inconsistent alignments for NM_013385-containing DoTS assembly
19460092 NM_013385 13 (0) -- (36) 0  
inconsistent alignments for NM_013365-containing DoTS assembly
19468015 NM_013365 17 (11) 0 (25) 0  
inconsistent alignments for NM_013341-containing DoTS assembly
19537206 NM_013341 5 (38) 0 (1715) 0  
inconsistent alignments for NM_013327-containing DoTS assembly
19524569 NM_013327 14 (0) -- (24) 0  
inconsistent alignments for NM_013310-containing DoTS assembly
19524773 NM_013310 14 (44) 1 (17) 0  
inconsistent alignments for NM_012429-containing DoTS assembly
19526845 NM_012429 13 (0) -- (23) 0  
inconsistent alignments for NM_012399-containing DoTS assembly
19529888 NM_012399 13 (0) -- (47) 0 (6)[5](0) 0
inconsistent alignments for NM_012237-containing DoTS assembly
19416426 NM_012237 4 (1967) 1 (1) --  
inconsistent alignments for NM_012179-containing DoTS assembly
19528892 NM_012179 9 (26) 0 (17) 0  
inconsistent alignments for NM_012143-containing DoTS assembly
19469000 NM_012143 17 (0) -- (0) --  
inconsistent alignments for NM_007311-containing DoTS assembly
19416426 NM_007311 4 (1967) 1 (1) --  
inconsistent alignments for NM_007310-containing DoTS assembly
19417673 NM_007310 8 (0) -- (43) 0  
inconsistent alignments for NM_007172-containing DoTS assembly
19415502 NM_007172 11 (14) 0 (2) --  
inconsistent alignments for NM_007098-containing DoTS assembly
19407981 NM_007098 33 (53) 0 (4) --  
inconsistent alignments for NM_007081-containing DoTS assembly
19529896 NM_007081 11 (4) -- (0) -- (14)[16](0) 0
inconsistent alignments for NM_006953-containing DoTS assembly
19524844 NM_006953 6 (5) -- (33) 0  
inconsistent alignments for NM_006860-containing DoTS assembly
19524960 NM_006860 7 (0) -- (50) 0  
inconsistent alignments for NM_006386-containing DoTS assembly
19469335 NM_006386 30 (0) -- (4) --  
inconsistent alignments for NM_006358-containing DoTS assembly
19415220 NM_006358 9 (3) -- (51) 0  
inconsistent alignments for NM_006116-containing DoTS assembly
19415704 NM_006116 11 (5) -- (55) 0  
inconsistent alignments for NM_006115-containing DoTS assembly
19415496 NM_006115 6 (7) -- (32) 0  
inconsistent alignments for NM_006078-containing DoTS assembly
19524776 NM_006078 8 (0) -- (1) -- (16)[15](0) 0
inconsistent alignments for NM_005940-containing DoTS assembly
19470477 NM_005940 9 (1) -- (18) 0  
inconsistent alignments for NM_005877-containing DoTS assembly
19527857 NM_005877 18 (8) -- (10) -- (7)[9](0) 0
inconsistent alignments for NM_005446-containing DoTS assembly
19407868 NM_005446 17 (34) 0 (0) --  
inconsistent alignments for NM_005207-containing DoTS assembly
19459255 NM_005207 8 (4) -- (227) 0  
inconsistent alignments for NM_005162-containing DoTS assembly
19416465 NM_005162 3 (0) -- (36) 0  
inconsistent alignments for NM_005138-containing DoTS assembly
19502635 NM_005138 2 (0) -- (31) 0  
inconsistent alignments for NM_005008-containing DoTS assembly
19527945 NM_005008 4 (26) 0 (22) 0  
inconsistent alignments for NM_004900-containing DoTS assembly
19460717 NM_004900 10 (1) -- (22) 0 (10)[1574](0) 0
inconsistent alignments for NM_004861-containing DoTS assembly
19415209 NM_004861 5 (0) -- (16) 0  
inconsistent alignments for NM_004599-containing DoTS assembly
19408017 NM_004599 26 (5) -- (0) -- (6)[6](0) 0
inconsistent alignments for NM_004286-containing DoTS assembly
19468397 NM_004286 14 (23) 0 (0) --  
inconsistent alignments for NM_004173-containing DoTS assembly
19407868 NM_004173 17 (34) 0 (0) --  
inconsistent alignments for NM_003776-containing DoTS assembly
19525678 NM_003776 4 (5) -- (18) 0  
inconsistent alignments for NM_003678-containing DoTS assembly
19535219 NM_003678 20 (0) -- (206) 0  
inconsistent alignments for NM_003595-containing DoTS assembly
19416557 NM_003595 7 (5) -- (62) 0  
inconsistent alignments for NM_003504-containing DoTS assembly
19525802 NM_003504 19 (15) 0 (37) 0  
inconsistent alignments for NM_003405-containing DoTS assembly
19416432 NM_003405 2 (0) -- (46) 0  
inconsistent alignments for NM_003347-containing DoTS assembly
19416467 NM_003347 4 (93) 0 (19) 0  
inconsistent alignments for NM_003312-containing DoTS assembly
19416551 NM_003312 3 (6) -- (20) 0  
inconsistent alignments for NM_002948-containing DoTS assembly
19529146 NM_002948 3 (41) 0 (261) 1  
inconsistent alignments for NM_002854-containing DoTS assembly
19525564 NM_002854 5 (0) -- (128) 0  
inconsistent alignments for NM_002430-containing DoTS assembly
19407882 NM_002430 15 (0) -- (34) 0  
inconsistent alignments for NM_002415-containing DoTS assembly
19416494 NM_002415 3 (0) -- (68) 0  
inconsistent alignments for NM_002405-containing DoTS assembly
19525735 NM_002405 8 (20) 0 (16) 0  
inconsistent alignments for NM_002309-containing DoTS assembly
19415372 NM_002309 6 (0) -- (16) 0  
inconsistent alignments for NM_002305-containing DoTS assembly
19416545 NM_002305 4 (0) -- (62) 0  
inconsistent alignments for NM_002133-containing DoTS assembly
19469060 NM_002133 5 (11) 0 (77) 1  
inconsistent alignments for NM_001835-containing DoTS assembly
19452995 NM_001835 33 (0) -- (20) 0  
inconsistent alignments for NM_001696-containing DoTS assembly
19527803 NM_001696 9 (46) 0 (27) 0  
inconsistent alignments for NM_001675-containing DoTS assembly
19530059 NM_001675 3 (2) -- (24) 0  
inconsistent alignments for NM_001670-containing DoTS assembly
19513230 NM_001670 20 (1) -- (54) 0  
inconsistent alignments for NM_001444-containing DoTS assembly
19526829 NM_001444 5 (43) 0 (121) 0  
inconsistent alignments for NM_001355-containing DoTS assembly
19530910 NM_001355 8 (0) -- (23) 0  
inconsistent alignments for NM_001196-containing DoTS assembly
19531445 NM_001196 5 (97) 0 (0) --  
inconsistent alignments for NM_001021-containing DoTS assembly
19528920 NM_001021 1 (46) 0 (42) 0  
inconsistent alignments for NM_000967-containing DoTS assembly
19471556 NM_000967 10 (9) -- (72) 0 (30)[827](0) 0
inconsistent alignments for NM_000854-containing DoTS assembly
19525021 NM_000854 5 (25) 0 (17) 0  
19525020 NM_000854 5 (25) 0 (17) 0  
inconsistent alignments for NM_000853-containing DoTS assembly
19469124 NM_000853 5 (3) -- (43) 0  
inconsistent alignments for NM_000754-containing DoTS assembly
19417673 NM_000754 8 (0) -- (43) 0  
inconsistent alignments for NM_000675-containing DoTS assembly
19415498 NM_000675 2 (207) 0 (17) 0  
inconsistent alignments for NM_000487-containing DoTS assembly
19525238 NM_000487 8 (0) -- (230) 1  
inconsistent alignments for NM_000395-containing DoTS assembly
19416544 NM_000395 13 (41) 0 (25) 1  
inconsistent alignments for NM_000343-containing DoTS assembly
19468909 NM_000343 17 (43) 0 (79) 0  
inconsistent alignments for NM_000268-containing DoTS assembly
19525750 NM_000268 17 (0) -- (15) 0  
inconsistent alignments for NM_000185-containing DoTS assembly
19525497 NM_000185 5 (35) 0 (17) 0