Blat Alignment ID Query Source Id Number of Spans 5 Prime Gap (size) > 10bp 3 Prime Gap (size) > 10bp
Internal Gap1..N > 5bp
(query gap size)[Genomic Interval](genomic gap size)
*note1: "--" for no 5 or 3 prime query gap, "1" for query gap falling into genomic sequence gap, "0" for query gap not falling into genomic sequence gap
*note2: for 5 or 3 prime query gap, look 10 times gapsize away on genomic sequence for genomic sequence gaps
inconsistent alignments for NM_030265
18646558 NM_030265 8 (60) 0 (4) --  
inconsistent alignments for NM_026667
18646680 NM_026667 13 (30) 0 (0) --  
inconsistent alignments for NM_025759
18646552 NM_025759 10 (1) -- (1) -- (8)[9](0) 0 : (7)[26](0) 0
18646550 NM_025759 8 (1) -- (1) -- (7)[8](0) 0
18646556 NM_025759 2 (332) 0 (593) 1  
18646545 NM_025759 13 (49) 0 (1) -- (303)[3140](0) 0 : (24)[20](0) 0 : (7)[16](0) 0
18646547 NM_025759 4 (600) 0 (309) 1 (20)[739](0) 0 : (24)[20](0) 0
18646546 NM_025759 9 (477) 1 (1) -- (140)[879](0) 0 : (24)[20](0) 0 : (27)[47](0) 0
18646548 NM_025759 2 (477) 1 (522) 0 (17)[14](0) 0
18646543 NM_025759 11 (1) -- (1) -- (30)[774](0) 0 : (26)[37](0) 0 : (7)[26](0) 0
18646554 NM_025759 11 (1) -- (1) -- (6)[25](0) 0 : (26)[37](0) 0 : (30)[774](0) 0 : (15)[1009](0) 0
inconsistent alignments for NM_025725
18646537 NM_025725 2 (2) -- (0) -- (19)[100](100) 1
inconsistent alignments for NM_025618
18646528 NM_025618 10 (1) -- (0) -- (10)[258](255) 1 : (59)[2858](1082) 1
inconsistent alignments for NM_024478
18646439 NM_024478 4 (48) 0 (14) 0  
inconsistent alignments for NM_024434
18646432 NM_024434 14 (0) -- (0) -- (49)[709](100) 1
inconsistent alignments for NM_023429
18646306 NM_023429 11 (11) 0 (15) 0  
inconsistent alignments for NM_021470
18645989 NM_021470 7 (13) 0 (0) --  
inconsistent alignments for NM_021416
18646421 NM_021416 9 (0) -- (924) 1  
inconsistent alignments for NM_020295
18645978 NM_020295 1 (0) -- (33) 0  
inconsistent alignments for NM_019810
18646207 NM_019810 18 (0) -- (15) 0 (6)[5](0) 0
inconsistent alignments for NM_019636
18646209 NM_019636 27 (0) -- (1) -- (159)[12982](100) 1 : (101)[1790](164) 1 : (6)[6](0) 0
inconsistent alignments for NM_019497
18646205 NM_019497 16 (18) 0 (0) --  
inconsistent alignments for NM_018878
18645604 NM_018878 20 (0) -- (0) -- (216)[4339](897) 1
inconsistent alignments for NM_016957
18645384 NM_016957 11 (12) 0 (0) --  
18645382 NM_016957 9 (12) 0 (0) --  
inconsistent alignments for NM_016736
18645407 NM_016736 26 (1) -- (10) -- (120)[6821](0) 0
inconsistent alignments for NM_015823
18645374 NM_015823 21 (696) 1 (865) 0  
inconsistent alignments for NM_013748
18645334 NM_013748 18 (0) -- (0) -- (37)[14837](100) 1
inconsistent alignments for NM_013457
18645272 NM_013457 25 (0) -- (0) -- (7)[3](0) 0
inconsistent alignments for NM_011995
18645937 NM_011995 28 (0) -- (0) -- (29)[104](100) 1 : (6)[5](0) 0
inconsistent alignments for NM_011890
18645107 NM_011890 8 (1) -- (0) -- (6)[3167](100) 1
inconsistent alignments for NM_011806
18645099 NM_011806 22 (7) -- (0) -- (123)[9627](168) 1
inconsistent alignments for NM_011716
18646100 NM_011716 13 (0) -- (0) -- (8)[0](0) 0 : (34)[0](0) 0
inconsistent alignments for NM_011524
18645053 NM_011524 17 (15) 0 (39) 0  
inconsistent alignments for NM_011348
18645033 NM_011348 35 (13) 0 (0) --  
inconsistent alignments for NM_011261
18645011 NM_011261 65 (0) -- (1) -- (176)[5653](1385) 1 : (176)[6453](1735) 1
inconsistent alignments for NM_011099
18644986 NM_011099 8 (0) -- (1) -- (7)[14](0) 0 : (9)[5](0) 0
inconsistent alignments for NM_011074
18644981 NM_011074 22 (13) 1 (0) --  
inconsistent alignments for NM_011058
18644979 NM_011058 34 (63) 0 (14) 0 (15)[0](0) 0 : (19)[100](100) 1
inconsistent alignments for NM_010835
18644960 NM_010835 12 (0) -- (1) -- (12)[3](0) 0 : (6)[5](0) 0
inconsistent alignments for NM_010727
18644943 NM_010727 10 (8) -- (0) -- (37)[9305](124) 1
inconsistent alignments for NM_010698
18646807 NM_010698 21 (15) 0 (99) 0 (9)[9](0) 0 : (47)[100](100) 1
inconsistent alignments for NM_010612
18644936 NM_010612 44 (0) -- (0) -- (182)[526](524) 1 : (120)[604](100) 1
inconsistent alignments for NM_010445
18644927 NM_010445 4 (0) -- (0) -- (88)[100](100) 1
inconsistent alignments for NM_010134
18644887 NM_010134 16 (25) 1 (0) -- (31)[100](100) 1
inconsistent alignments for NM_009784
18644826 NM_009784 43 (8) -- (7) -- (116)[146995](6784) 1 : (19)[1037](100) 1
inconsistent alignments for NM_009583
18644792 NM_009583 21 (0) -- (10) -- (11)[13](0) 0
inconsistent alignments for NM_009535
18644768 NM_009535 26 (0) -- (23) 0 (6)[5](0) 0
inconsistent alignments for NM_009466
18644733 NM_009466 13 (0) -- (1) -- (6)[0](0) 0
inconsistent alignments for NM_009152
18644474 NM_009152 18 (0) -- (0) -- (9)[12372](0) 0
inconsistent alignments for NM_008935
18644413 NM_008935 26 (32) 0 (0) -- (10)[2003](100) 1
inconsistent alignments for NM_008904
18644399 NM_008904 13 (12) 0 (17) 0  
18644402 NM_008904 2 (12) 0 (2710) 1  
inconsistent alignments for NM_008889
18644395 NM_008889 3 (257) 1 (0) --  
inconsistent alignments for NM_008453
18644295 NM_008453 5 (5) -- (103) 0  
inconsistent alignments for NM_008069
18644179 NM_008069 8 (0) -- (0) -- (150)[12507](5111) 1
inconsistent alignments for NM_008066
18644177 NM_008066 11 (24) 0 (0) --  
inconsistent alignments for NM_008013
18644163 NM_008013 2 (108) 0 (0) --  
inconsistent alignments for NM_008010
18644161 NM_008010 23 (0) -- (4) -- (32)[102](100) 1
inconsistent alignments for NM_007937
18644145 NM_007937 27 (3) -- (18) 0 (13)[17](0) 0 : (184)[19769](100) 1
inconsistent alignments for NM_007839
18644134 NM_007839 20 (0) -- (2) -- (8)[7](0) 0 : (6)[7](0) 0
inconsistent alignments for NM_007765
18644096 NM_007765 16 (0) -- (0) -- (61)[19623](160) 1
inconsistent alignments for NM_007646
18644076 NM_007646 10 (3) -- (4) -- (22)[0](0) 0