CHIP ELEMENT_ID NAME PID TILE_TYPE EPCR_CLASS CONTROL_TYPE CONTROL_NAME GENOMIC_LOCATION_MM8 TILE_STRAND PRIMARY_REFSEQ PRIMARY_STRAND PRIMARY_DISTANCE_TO_TSS PRIMARY_REFSEQ_TSS GENEID SYMBOL SYNONYMS DESCRIPTION MGI_ID UG CHROMOSOME MAP_LOCATION HUMAN_SYMBOL HUMAN_GENEID SECONDARY_REFSEQ SECONDARY_STRAND SECONDARY_DISTANCE_TO_TSS SECONDARY_REFSEQ_TSS SECONDARY_GENEID SECONDARY_SYMBOL PCR_STATUS FORWARD_PRIMER REVERSE_PRIMER BLOCK COL ROW FEATURE_LOCATION BCBC-5B-0 14130215 P211856 Otx2 PufferfishHuman P211856 PufferfishHuman Unique Tile chr14:47579533-47580479 (-) NM_144841 - 4344 47584823 18424 Otx2 E130306E05Rik orthodenticle homolog 2 (Drosophila) MGI:97451 Mm.134516 14 14 C1|14 19.0 cM OTX2 5015 0 CAACCTGAAATGGACAAACCAAT TCTGCCGTACAATAAACATGGTG 1 1 1 1.1.1.1.1.1 BCBC-5B-0 14130234 P212606 miRNA P212606 miRNA Unique Tile chrX:18303747-18304678 (+) mmu-mir-221 0 TGATCTGAAAACTGTGTGTGCCT GCCTGGGAAAAGATTCAGAAAAG 1 1 2 1.1.1.1.2.1 BCBC-5B-0 14130253 P213728 Cnn1 Enhancer P213728 Enhancer Unique Tile chr9:21850353-21851309 (+) NM_009922 + 671 21849682 12797 Cnn1 CN|CnnI calponin 1 MGI:104979 Mm.4356 9 9 A2-A4 CNN1 1264 NM_170777 - 13262 21864571 66126 Elof1 1 ACACTGAGGCACTTTCTTTCCAG GCACCAATGAATAGACAAGAGGG 1 1 3 1.1.1.1.3.1 BCBC-5B-0 14130272 P214568 Exosc10 Enhancer P214568 Enhancer Unique Tile chr4:147402365-147403361 (+) NM_016699 + 104 147402261 50912 Exosc10 PM-Scl|PM/Scl-100|Pmscl2|RRP6|p2|p3|p4 exosome component 10 MGI:1355322 Mm.266635 4 4 E2 EXOSC10 5394 NM_009272 + 31957 147435318 20810 Srm 0 ACAGCTTCGTAAAGGTGAGTTCG GACCCAAGTGCAAACTGAAAATC 1 1 4 1.1.1.1.4.1 BCBC-5B-0 14130291 P215318 Ube2d3 Enhancer P215318 Enhancer Unique Tile chr3:135376525-135377366 (+) NM_025356 + 361 135376164 66105 Ube2d3 1100001F19Rik|9430029A22Rik|AA414951 ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) MGI:1913355 Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884; Mm.256765; Mm.391601; Mm.398275; Mm.49884 3 3 G3 UBE2D3 7323 NM_025902 - 15705 135360820 67006 1500009M05Rik 1 GGAGAGTACGGTGGTGTCAGG ACCCAAACCATTCAGTTCCCTAT 1 1 5 1.1.1.1.5.1 BCBC-5B-0 14130310 P216440 Pcdh18 Enhancer P216440 Enhancer Unique Tile chr3:49854373-49855304 (-) NM_130448 - 897 49853476 73173 Pcdh18 3110038E07Rik|BB095589|PCDH68L protocadherin 18 MGI:1920423 Mm.87246 3 3 C PCDH18 54510 0 TGGCTCAGATTGTTAGCGACATA GCTTGGGTAAAATTGGTAGCCTT 1 1 6 1.1.1.1.6.1 BCBC-5B-0 14130329 P217190 Pygb Enhancer P217190 Enhancer Unique Tile chr2:150478460-150479439 (+) NM_153781 + 224 150478236 110078 Pygb MGC36329 brain glycogen phosphorylase MGI:97828 Mm.222584 2 2 G3|2 84.0 cM PYGB 5834 NM_172117 + 37869 150440591 12497 Entpd6 1 ACTACTTCTTCGCTCTGGCACAC CAGAGTTAGCAGTCCAGCAGACA 1 1 7 1.1.1.1.7.1 BCBC-5B-0 14130348 P218030 Pax6 ChickenHuman P218030 ChickenHuman Unique Tile chr2:105460777-105461720 (-) NM_013627 + 8029 105469749 18508 Pax6 1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey paired box gene 6 MGI:97490 Mm.3608 2 2 E3|2 58.0 cM PAX6 5080 2 ACTCCAAACTCTGAGACCACCAG CAGAGCCTTGAGGACAAAACAGT 1 1 8 1.1.1.1.8.1 BCBC-5B-0 14130367 P219070 Slc28a1 ProximalPromoter P219070 ProximalPromoter Unique Tile chr7:80967373-80968413 (+) NM_001004184 + 19898 80988311 434203 Slc28a1 MGC74379 solute carrier family 28 (sodium-coupled nucleoside transporter), member 1 MGI:3605073 Mm.389909 7 7 D3 SLC28A1 9154 NM_054085 + 36261 80931112 116904 Alpk3 0 AGGAAGAGGTTCCTCCCTAAGGT ACAGGAGCCCTGTTACAAGACAG 1 1 9 1.1.1.1.9.1 BCBC-5B-0 14130386 P219820 Krt27 Enhancer P219820 Enhancer Unique Tile chr11:99171268-99172168 (-) NM_010666 - 4084 99167184 16675 Krt27 Krt1-c29 keratin 27 MGI:1339999 Mm.268173 11 11 D|11 57.85 cM KRT27 342574 NM_001033397 - 17214 99154054 320864 Krt26 0 ACTCTGCTCAAACCCTCCTCTTT TGGAACATAAAGACCAACAACCA 1 1 10 1.1.1.1.10.1 BCBC-5B-0 14130405 P220942 Tiaf2 ProximalPromoter P220942 ProximalPromoter Unique Tile chr15:27422838-27423740 (+) NM_153061 + 10 27423730 223431 Tiaf2 Tif2 TGF-beta1-induced anti-apoptotic factor 2 MGI:2651383 Mm.265264 15 15 B1 NM_020332 + 11344 27411494 11732 Ank 0 TTCTTTTATAGGGTTGGGGGAGA CCCTACCTAAGACACCAGCCTTT 1 1 11 1.1.1.1.11.1 BCBC-5B-0 14130424 P221782 Olfr466 ProximalPromoter P221782 ProximalPromoter Unique Tile chr13:65166172-65167078 (+) NM_146819 + 62 65167016 258816 Olfr466 MOR209-1 olfactory receptor 466 MGI:3030300 Mm.377705 13 - OR9H1P 81439 NM_133680 - 38437 65127735 66631 Hiatl1 0 CCAGAGACCAGAAAGGTCAGAAA ATACCAGGACCTCCTCTGAATCC 1 1 12 1.1.1.1.12.1 BCBC-5B-0 14130443 P222532 Ush1g ProximalPromoter P222532 ProximalPromoter Unique Tile chr11:115138122-115139072 (-) NM_176847 - 114 115138008 16470 Ush1g Sans|js Usher syndrome 1G homolog (human) MGI:2450757 Mm.390386 11 11 E2|11 77.0 cM USH1G 124590 NM_027132 + 11796 115150868 69602 Otop3 0 AAGAGTTCGGCTCCATAAACCTC CGACTACAGACTACCGGGACATC 1 1 13 1.1.1.1.13.1 BCBC-5B-0 14130462 P223654 Arl13b Enhancer P223654 Enhancer Unique Tile chr16:62791882-62792830 (-) NM_026577 - 2629 62789253 68146 Arl13b A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik ADP-ribosylation factor-like 13B MGI:1915396 Mm.96833 16 16 C1.2 ARL13B 200894 NM_011173 + 3759 62796589 19128 Pros1 2 CAGAGAGGGTATGGAAGGGAACT CAGGAAACAGAAGCAGACTGACA 1 1 14 1.1.1.1.14.1 BCBC-5B-0 14130481 P224404 Six6 Enhancer P224404 Enhancer Unique Tile chr12:73856675-73857658 (+) NM_011384 + 1124 73858782 20476 Six6 Optx2|Six9 sine oculis-related homeobox 6 homolog (Drosophila) MGI:1341840 Mm.57138 12 12 C3 SIX6 4990 NM_029444 - 20072 73836603 75801 Six6os1 0 GAATCTCAGCAGGTTTCCAAGAA GTGCAGTTAAGGTGGCAAGGTAG 1 1 15 1.1.1.1.15.1 BCBC-5B-0 14130500 P225244 9530085L02Rik ProximalPromoter P225244 ProximalPromoter Unique Tile chr9:42364129-42365064 (-) NM_001002783 - 67 42364062 442822 9530085L02Rik - RIKEN cDNA 9530085L02 gene MGI:3045286 Mm.370291 9 9 A5.1 0 ATCCTTTGAAGCTGTCTTTGCTG TCAGTGATTCCAGGGGACTTTTA 1 1 16 1.1.1.1.16.1 BCBC-5B-0 14130519 P226472 Crybb2 Pdx1 P226472 Pdx1 Unique Tile chr5:113294219-113295127 (+) NM_007773 - 13942 113309069 12961 Crybb2 Aey2|Cryb-2|Phil crystallin, beta B2 MGI:88519 Mm.1215 5 5 F|5 60.0 cM CRYBB2 1415 NM_021352 - 25759 113320886 12962 Crybb3 0 CATATTTTAAATGCTTGGGGGCT CCTTCCATTGAGACTCTGGAACA 1 1 17 1.1.1.1.17.1 BCBC-5B-0 14130538 P226262 Pdx1 P226262 Pdx1 Unique Tile chr12:33193173-33194076 (+) 0 GCAGATAAAAGGGAAGGTGGAGT TACCAACCACTACAGCTGCTCAA 1 1 18 1.1.1.1.18.1 BCBC-5B-0 14130557 P002344 Stratagene PCR 1 P002344 Spike Control Negative Stratagene PCR 1 1 1 19 1.1.1.1.19.1 BCBC-5B-0 14130576 P003423 Cy3 Anchor P003423 Anchor Control Positive Cy3 Anchor 1 1 20 1.1.1.1.20.1 BCBC-5B-0 14130216 P211832 Ebf3 PufferfishHuman P211832 PufferfishHuman Unique Tile chr7:137144104-137145084 (-) NM_010096 - 7673 137152757 13593 Ebf3 3110018A08Rik|KIAA4201|O/E-2|mKIAA4201 early B-cell factor 3 MGI:894289 Mm.258708 7 7 F3-F4 EBF3 253738 0 GAAAGAACAAAAACACTGCCACC AGTGTATTGGAGGAAAGTGCTGC 1 2 1 1.1.1.1.1.2 BCBC-5B-0 14130235 P212582 miRNA P212582 miRNA Unique Tile chr11:86400027-86400993 (-) mmu-mir-21 0 GGAAAATCTGGTTGGTGTCTCAC AGGACAACCTTTCCAAAATCCAT 1 2 2 1.1.1.1.2.2 BCBC-5B-0 14130254 P213422 Sema3a Enhancer P213422 Enhancer Unique Tile chr5:13408320-13409297 (+) NM_009152 + 2653 13405667 20346 Sema3a Hsema-I|SEMA1|SemD|Semad|coll-1 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A MGI:107558 Mm.372039 5 5 A1 SEMA3A 10371 0 TTTGTGCCTCTTCACACACACTT TTCAGCAGACACCATCCTACTGA 1 2 3 1.1.1.1.3.2 BCBC-5B-0 14130273 P214544 Fbxo18 Enhancer P214544 Enhancer Unique Tile chr2:11694231-11695246 (-) NM_015792 - 134 11695380 50755 Fbxo18 AU015756|Fbx18 F-box protein 18 MGI:1354699 Mm.24088 2 2 A1 FBXO18 84893 NM_177268 + 1183 11696429 320816 Ankrd16 0 GGAAAACTTCCTATTGTGGGGTC AAAGCATAAATACCCACCGCTCT 1 2 4 1.1.1.1.4.2 BCBC-5B-0 14130292 P215294 Pcbd1 Enhancer P215294 Enhancer Unique Tile chr10:60487267-60488221 (+) NM_025273 + 2513 60484754 13180 Pcbd1 Dcoh|Pcbd pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 MGI:94873 Mm.39473 10 10 B4|10 36.0 cM PCBD1 5092 0 CAGGGCTCTTCTCTGGAAACATA CTCCAGTGAGACTGGCTGTTTTT 1 2 5 1.1.1.1.5.2 BCBC-5B-0 14130311 P216416 Kcnn3 Enhancer P216416 Enhancer Unique Tile chr3:89607661-89608567 (+) NM_080466 + 1313 89606348 140493 Kcnn3 MGC123421|MGC123422|SK3|SKCA3 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 MGI:2153183 Mm.120250 3 3 F2 KCNN3 3782 1 GTGTTTGCCAGTTCCTGCTACTT ATTTGAAACCTCCAACAGCTGAG 1 2 6 1.1.1.1.6.2 BCBC-5B-0 14130330 P217256 Thoc5 Enhancer P217256 Enhancer Unique Tile chr11:4795540-4796508 (+) NM_172438 + 185 4795355 107829 Thoc5 1700060C24Rik|Fmip|MGC49541|PK1.3|Sgk2 THO complex 5 MGI:1351333 Mm.28969 11 11 A1 THOC5 8563 NM_008698 + 21533 4774007 18082 Nipsnap1 0 CATCCTCTGTCCCCATTGTAGTC GGAAGCCATTTCCTATTTATGGC 1 2 7 1.1.1.1.7.2 BCBC-5B-0 14130349 P218006 ChickenHuman P218006 ChickenHuman Unique Tile chr1:99807215-99808199 (-) 1 TGTTCTCATATTTTCTGCCCGAT CAACGTCCTTCCTCCAGTCTAAA 1 2 8 1.1.1.1.8.2 BCBC-5B-0 14130368 P219046 Synpo2l ProximalPromoter P219046 ProximalPromoter Unique Tile chr14:19456948-19457948 (-) NM_175132 - 90 19456858 68760 Synpo2l 1110054M18Rik synaptopodin 2-like MGI:1916010 Mm.35789 14 14 A3 SYNPO2L 79933 NM_172596 + 4946 19462894 218811 Sec24c 0 TGTCCAATGAGTGACATCTTGCT CTTGCTCAAAATAGTTGCTGGCT 1 2 9 1.1.1.1.9.2 BCBC-5B-0 14130387 P219796 Olfr362 ProximalPromoter P219796 ProximalPromoter Unique Tile chr2:36927609-36928600 (-) NM_147051 - 48 36927657 259053 Olfr362 MGC123777|MGC123778|MGC123851|MOR158-1 olfactory receptor 362 MGI:3030196 Mm.377810 2 - OR1B1 347169 NM_146368 - 19854 36907755 258365 Olfr361 0 GCTCCTGTCTATTTCATCATGGG CAAGGAGCAAGAAGATTGGAGAA 1 2 10 1.1.1.1.10.2 BCBC-5B-0 14130406 P220636 2610528E23Rik Enhancer P220636 Enhancer Unique Tile chr16:57526704-57527620 (-) NM_025599 - 280 57527900 66497 2610528E23Rik 1110001A06Rik|4930572F24Rik|AV099812|AV122629 RIKEN cDNA 2610528E23 gene MGI:1913747 Mm.425976 16 16 C1.1 C3orf26 84319 0 CAGTCTGAGAGGGCTACTTCCTG GTTCCCCTTAAATCACAAAACCC 1 2 11 1.1.1.1.11.2 BCBC-5B-0 14130425 P221758 Krt6b ProximalPromoter P221758 ProximalPromoter Unique Tile chr15:101522273-101523185 (-) NM_010669 - 9 101522282 16688 Krt6b BB144589|Krt2-6b|mK6[b] keratin 6B MGI:1333768 Mm.302399 15 15 F2|15 58.76 cM KRT6B 3854 NM_008476 - 66 101522339 16687 Krt6a 0 AACATCTTAACGCACCAGAGGAG TGGTAGACATGGTTCCTGGAGAT 1 2 12 1.1.1.1.12.2 BCBC-5B-0 14130444 P222508 Gpr33 ProximalPromoter P222508 ProximalPromoter Unique Tile chr12:52949720-52950747 (-) NM_008159 - 37 52949683 14762 Gpr33 - G protein-coupled receptor 33 MGI:1277106 Mm.12890 12 12 C1 GPR33 2856 NM_029545 - 21599 52928121 328092 6530401N04Rik 0 TCAAGGGTCTCAACTCCTTCATC CTTTCAACTCCTCCGGTTTCTTT 1 2 13 1.1.1.1.13.2 BCBC-5B-0 14130463 P223630 Olfr1101 ProximalPromoter P223630 ProximalPromoter Unique Tile chr2:86790047-86791047 (-) NM_146591 - 34 86790013 258584 Olfr1101 MOR179-3 olfactory receptor 1101 MGI:3030935 Mm.377579 2 - NM_146594 - 10414 86779633 258587 Olfr1100 0 AGATGACACCAATAGCTTGAGGC CAGAGTACCTTCCCCCTTTCAGT 1 2 14 1.1.1.1.14.2 BCBC-5B-0 14130482 P224470 5930416I19Rik ProximalPromoter P224470 ProximalPromoter Unique Tile chr6:128328579-128329496 (-) NM_197981 - 138 128328441 72440 5930416I19Rik 2510047L19Rik RIKEN cDNA 5930416I19 gene MGI:1915315 Mm.143908 6 6 F3 C12orf32 83695 NM_008021 + 15 128328594 14235 Foxm1 1 CTGAGCCTCTGGCCTCTAATTTT AATTTCAAACAGCGGAACAACTG 1 2 15 1.1.1.1.15.2 BCBC-5B-0 14130501 P225220 Ankrd6 ProximalPromoter P225220 ProximalPromoter Unique Tile chr4:33252024-33253123 (-) NM_001012451;NM_080471;NM_001012450; - 44 33252068 140577 Ankrd6 - ankyrin repeat domain 6 MGI:2154278 Mm.214766 4 4 A5 ANKRD6 22881 1 TATAGCTCTGGCTGTCCTGGAAC CTCAGACCACAATGGATTCACAA 1 2 16 1.1.1.1.16.2 BCBC-5B-0 14130520 P226448 Pabpnl1 Pdx1 P226448 Pdx1 Unique Tile chr8:125542859-125543766 (+) NM_001007462 - 34034 125508825 382035 Pabpnl1 Gm1108|ePABP2 poly(A)binding protein nuclear-like 1 MGI:2685954 Mm.25449 8 8 E1 LOC390748 390748 NM_009824 - 41301 125585067 12398 Cbfa2t3h 2 TCTACACCCATTTCCACACACAC TGCAGCTCTCTAGTGTCCTCCTT 1 2 17 1.1.1.1.17.2 BCBC-5B-0 14130539 P226238 Apba2 Pdx1 P226238 Pdx1 Unique Tile chr7:64544191-64545093 (+) NM_007461 + 28889 64573982 11784 Apba2 X11-like|X11L|XllL|mXllL amyloid beta (A4) precursor protein-binding, family A, member 2 MGI:1261791 Mm.4657 7 7 C|7 25.5 cM APBA2 321 0 CGAAGCTTGGAGGTTGTAATGTT CCTACGATCTGAGTCCACCATTC 1 2 18 1.1.1.1.18.2 BCBC-5B-0 14130558 P226214 Pdx1 P226214 Pdx1 Unique Tile chr17:64713761-64714663 (+) 2 CAGGTATGCATGTGTGTGTGTGT GGGAAGTATCAGATGGTGAAACA 1 2 19 1.1.1.1.19.2 BCBC-5B-0 14130577 P003375 Cy3 Anchor P003375 Anchor Control Positive Cy3 Anchor 1 2 20 1.1.1.1.20.2 BCBC-5B-0 14130217 P211808 PufferfishHuman P211808 PufferfishHuman Unique Tile chr7:36094388-36095349 (-) 0 ATCTCTGAGAGTGTCTGTTGGGG AACAGGGGATAACCCTTTTGTGT 1 3 1 1.1.1.1.1.3 BCBC-5B-0 14130236 P212648 miRNA P212648 miRNA No Hits Tile 1 ttcaggtgttccagttgagttga agggtttttctgtatagcccagg 1 3 2 1.1.1.1.2.3 BCBC-5B-0 14130255 P213398 Rps6ka1 Enhancer P213398 Enhancer Unique Tile chr4:133157694-133158701 (-) NM_009097 - 1125 133159826 20111 Rps6ka1 Rsk1|p90rsk|rsk ribosomal protein S6 kinase polypeptide 1 MGI:104558 Mm.301827 4 - RPS6KA1 6195 0 TAGATGCTTTTTCTCCTGGCTTG GCAGGCTAGGCACTGTATCACTT 1 3 3 1.1.1.1.3.3 BCBC-5B-0 14130274 P214520 Hnf4g Enhancer P214520 Enhancer Unique Tile chr3:3488738-3489672 (+) NM_013920 + 4080 3493752 30942 Hnf4g NR2A2 hepatocyte nuclear factor 4, gamma MGI:1353604 Mm.330897; Mm.393931; Mm.330897; Mm.393931; Mm.330897; Mm.393931; Mm.330897; Mm.393931 3 3 A HNF4G 3174 1 GGAAAACCGAGAAACCATAATCC CTGTTCATAAAAATGCAAAGCCC 1 3 4 1.1.1.1.4.3 BCBC-5B-0 14130293 P215270 Ky Enhancer P215270 Enhancer Unique Tile chr9:102362644-102363640 (+) NM_024291 + 244 102362400 16716 Ky CD1|D9Mgc44e|ky kyphoscoliosis peptidase MGI:96709 Mm.101692 9 9 F1|9 56.0 cM KY 339855 0 AACGAGGCTAATCCGAACCTCT TCCTCACACTCCGTCCTAAACTC 1 3 5 1.1.1.1.5.3 BCBC-5B-0 14130312 P216110 Enhancer P216110 Enhancer Unique Tile chr7:29064994-29065968 (-) 1 TGTGTGTGTGTGTGTGTGTGTGT CATATGGCATCTCTTATCCTGGC 1 3 6 1.1.1.1.6.3 BCBC-5B-0 14130331 P217232 Plcg2 Enhancer P217232 Enhancer Unique Tile chr8:120384405-120385309 (+) NM_172285 + 138 120384267 234779 Plcg2 MGC38590|Plcg-2 phospholipase C, gamma 2 MGI:97616 Mm.192699 8 8 E1 PLCG2 5336 1 AGGTGAGTAGCCAGGATGGATG ACCCCAACATCCTGTAAGTGTCC 1 3 7 1.1.1.1.7.3 BCBC-5B-0 14130350 P217982 Cflar Enhancer P217982 Enhancer Unique Tile chr1:58655725-58656664 (+) NM_009805;NM_207653; + 1175 58657839 12633 Cflar CLARP|Cash|Casper|FLAME|Flip|I-FLICE|MGC103395|MRIT|c-Flip CASP8 and FADD-like apoptosis regulator MGI:1336166 Mm.11778; Mm.28347; Mm.336848; Mm.11778; Mm.28347; Mm.336848; Mm.11778; Mm.28347; Mm.336848; Mm.11778; Mm.28347; Mm.336848; Mm.11778; Mm.28347; Mm.336848; Mm.11778; Mm.28347; Mm.336848; Mm.11778; Mm.28347; Mm.336848; Mm.11778; Mm.28347; Mm.336848; Mm.11778; Mm.28347; Mm.336848; Mm.11778; Mm.28347; Mm.336848; Mm.11778; Mm.28347; Mm.336848; Mm.11778; Mm.28347; Mm.336848; Mm.11778; Mm.28347; Mm.336848; Mm.11778; Mm.28347; Mm.336848; Mm.11778; Mm.28347; Mm.336848; Mm.11778; Mm.28347; Mm.336848; Mm.11778; Mm.28347; Mm.336848; Mm.11778; Mm.28347; Mm.336848; Mm.11778; Mm.28347; Mm.336848; Mm.11778; Mm.28347; Mm.336848; Mm.11778; Mm.28347; Mm.336848; Mm.11778; Mm.28347; Mm.336848 1 1 C1.3|1 30.1 cM CFLAR 8837 NM_175370 - 15224 58640501 108812 Als2cr12 1 GGCCTCCAAGAGAGTAACACAGA AACCAACTTTTCGAAAGGAAAGC 1 3 8 1.1.1.1.8.3 BCBC-5B-0 14130369 P219022 Prap1 Enhancer P219022 Enhancer Unique Tile chr7:139940622-139941663 (+) NM_009475 + 3059 139944722 22264 Prap1 Upa proline-rich acidic protein 1 MGI:893573 Mm.141646 7 7 F5 PRAP1 118471 NM_026769 - 6754 139933868 68566 Drd1ip 0 CTCCAGCTTTGAACTGCCTTTTA TCAGAGTCCCTAGCAAAAACACC 1 3 9 1.1.1.1.9.3 BCBC-5B-0 14130388 P219862 V1rf3 ProximalPromoter P219862 ProximalPromoter Unique Tile chr17:21017773-21018688 (+) NM_134200 + 25 21018713 171234 V1rf3 Vfrf3 vomeronasal 1 receptor, F3 MGI:2159637 Mm.430767 17 17 A3.2 NM_134201 + 26455 20991318 171235 V1rf4 0 CTTAAATACCGGCCCATCTCTCT GTTCTGACATGGGAAGGTGAAAC 1 3 10 1.1.1.1.10.3 BCBC-5B-0 14130407 P220612 Rab6ip1 ProximalPromoter P220612 ProximalPromoter Unique Tile chr7:109751296-109752277 (-) NM_021494 - 303 109751599 19347 Rab6ip1 1500012B19Rik|AJ245569|AW496491|ORF37|mKIAA1091 Rab6 interacting protein 1 MGI:1201681 Mm.21904 7 7 E3 RAB6IP1 23258 NM_153525 - 25127 109777404 233724 Tmem41b 1 AATGAATGAATGAAGGGTGATGG AGATGACAAAATAGTCGGCGAAG 1 3 11 1.1.1.1.11.3 BCBC-5B-0 14130426 P221734 Nnmt Enhancer P221734 Enhancer Unique Tile chr9:48352473-48353406 (-) NM_010924 - 3554 48356960 18113 Nnmt - nicotinamide N-methyltransferase MGI:1099443 Mm.8362 9 9 A5.3|9 29.0 cM NNMT 4837 0 ATTCCCCAGGACAGAATTGGTAT TGTGTGTGTGTGTCTGTGGGTAG 1 3 12 1.1.1.1.12.3 BCBC-5B-0 14130445 P222484 Piwil2 Enhancer P222484 Enhancer Unique Tile chr14:69163101-69164033 (-) NM_021308 - 141 69164174 57746 Piwil2 Piwil1l|mili piwi-like homolog 2 (Drosophila) MGI:1930036 Mm.85253 14 14 D2 PIWIL2 55124 NM_025945 - 14494 69178527 67065 Polr3d 0 GTGGTGGAAAGGTACTTTGCTGT TCCAGGGTTCAAAGTTGTTGATT 1 3 13 1.1.1.1.13.3 BCBC-5B-0 14130464 P223324 Cdh24 ProximalPromoter P223324 ProximalPromoter Unique Tile chr14:53595749-53596566 (-) NM_199470 - 226 53595523 239096 Cdh24 1700040A22Rik|MGC67331 cadherin-like 24 MGI:1928330 Mm.386871 14 14 C2 CDH24 64403 NM_023190;NM_019567; - 11255 53607821 56215 Acin1 0 ACTGGGTCACCTATGAGCTGAAT GGGTAGCACGGCTAGGCTATTAT 1 3 14 1.1.1.1.14.3 BCBC-5B-0 14130483 P224446 Krt84 ProximalPromoter P224446 ProximalPromoter Unique Tile chr15:101360794-101361863 (-) NM_008474 - 7 101360801 16680 Krt84 AV235125|HRb-1|Krt2-16|Krt2-3|MGC140837 keratin 84 MGI:96700 Mm.25292 15 15 F2|15 58.74 cM KRT84 3890 NM_053249 - 16830 101378693 114566 Krt82 0 TATCGGTGTCCGGCTATAAGAAA GCTTTGTAGACGGTAGCTGAGGA 1 3 15 1.1.1.1.15.3 BCBC-5B-0 14130502 P225196 Usp13 ProximalPromoter P225196 ProximalPromoter Unique Tile chr3:33008166-33009121 (+) NM_001013024 + 53 33009174 72607 Usp13 2700071E21Rik|AI848077|ISOT3|IsoT-3|MGC107670 ubiquitin specific peptidase 13 (isopeptidase T-3) MGI:1919857 Mm.316153; Mm.393535; Mm.316153; Mm.393535; Mm.316153; Mm.393535; Mm.316153; Mm.393535 3 3 A3 USP13 8975 1 TCTTTGCTCTGAAGCAATGTGAG CTGCTATTTTTAATCCAATGGCG 1 3 16 1.1.1.1.16.3 BCBC-5B-0 14130521 P226424 Pick1 Pdx1 P226424 Pdx1 Unique Tile chr15:79057488-79058395 (+) NM_008837 + 421 79057067 18693 Pick1 Prkcabp protein interacting with C kinase 1 MGI:894645 Mm.259464 15 15 E2 PICK1 9463 NM_020516 - 23608 79082003 57274 Slc16a8 0 TTTTAATCAGATGTGAGCAGCCA CAGACATCAAACACACATACGCA 1 3 17 1.1.1.1.17.3 BCBC-5B-0 14130540 P226304 Pdx1 P226304 Pdx1 Unique Tile chrX:111142872-111143775 (+) 0 CAAGAATAACAGGCACCCAATGT ACTATCTGAGACCATGCACAGGC 1 3 18 1.1.1.1.18.3 BCBC-5B-0 14130559 P226190 Abcc8 Pdx1 P226190 Pdx1 Unique Tile chr7:46033176-46034077 (+) NM_011510 - 13998 46048075 20927 Abcc8 D930031B21Rik|SUR1|Sur ATP-binding cassette, sub-family C (CFTR/MRP), member 8 MGI:1352629 Mm.259076 7 7 B3|7 41.0 cM ABCC8 6833 0 TTCTCATATTCATCCCTTTGTCC CTGGTCCTCAGCAGCACATTC 1 3 19 1.1.1.1.19.3 BCBC-5B-0 14130578 P003231 Blank P003231 Buffer Control Negative Blank 1 3 20 1.1.1.1.20.3 BCBC-5B-0 14130218 P211502 PufferfishHuman P211502 PufferfishHuman Unique Tile chr18:84548778-84549760 (-) 1 CAGATCGGGCTTTTTCTTTTTCT AACGACAAGCAAACCAATTCTGT 1 4 1 1.1.1.1.1.4 BCBC-5B-0 14130237 P212624 miRNA P212624 miRNA Unique Tile chr8:87095636-87096704 (+) mmu-mir-23a 1 GTGCTGGATATTGAACCTGGAAC GGTGGCTCAAAACCATCTGTAAC 1 4 2 1.1.1.1.2.4 BCBC-5B-0 14130256 P213374 Rdh16 Enhancer P213374 Enhancer Unique Tile chr10:127207346-127208312 (+) NM_009040 + 3214 127204132 19683 Rdh16 CRAD|CRAD1|MGC107668|Rdh6 retinol dehydrogenase 16 MGI:1201375 Mm.100276 10 10 D3 RDH16 8608 NM_199313 + 18920 127227232 380674 AY053573 0 AGCAGGTAAACCAAACAGCAGAC TTAGGAAACTGCTCCATAGCCAG 1 4 3 1.1.1.1.3.4 BCBC-5B-0 14130275 P214496 Ror2 Enhancer P214496 Enhancer Unique Tile chr13:53292231-53293131 (-) NM_013846 - 512 53293643 26564 Ror2 Ntrkr2|mRor2 receptor tyrosine kinase-like orphan receptor 2 MGI:1347521 Mm.342774 13 13 34.2 cM ROR2 4920 0 GACCACTAAGTGTTTCCAGAGGC AACGGTAAATACCATCAGCATCG 1 4 4 1.1.1.1.4.4 BCBC-5B-0 14130294 P215336 Prr13 Enhancer P215336 Enhancer Unique Tile chr15:102289171-102290075 (+) NM_025385 + 1906 102287265 66151 Prr13 1110020C13Rik|2010324E22Rik proline rich 13 MGI:1913401 Mm.29865 15 15 F3 PRR13 54458 NM_011042 + 8742 102298817 18521 Pcbp2 0 TGAGTGGTCATATGGCCCTTAGT ACCAACAAAATCAAGGGTTTCCT 1 4 5 1.1.1.1.5.4 BCBC-5B-0 14130313 P216086 Tjap1 Enhancer P216086 Enhancer Unique Tile chr17:45747658-45748643 (-) NM_028751 - 1064 45746594 74094 Tjap1 0610041D19Rik|AI415281|AW121008|Pilt|Tjp4 tight junction associated protein 1 MGI:1921344 Mm.284594 17 17 B3 TJAP1 93643 NM_207666 + 12148 45760791 106565 Egfl9 0 TAGTAGAAACCAGCTCACCCAGG GCCCTAACGTCTCTTCAAGTCAA 1 4 6 1.1.1.1.6.4 BCBC-5B-0 14130332 P217208 Psenen Enhancer P217208 Enhancer Unique Tile chr7:30270051-30271112 (+) NM_025498 - 832 30271944 66340 Psenen 1700023M09Rik|MGC102026 presenilin enhancer 2 homolog (C. elegans) MGI:1913590 Mm.86557 7 7 B1 PSENEN 55851 NM_170760 + 987 30272099 233073 U2af1l4 0 CTCCTGGATAAGACACCTCCCTT CTACACAGAGCAGAGCCAAATCA 1 4 7 1.1.1.1.7.4 BCBC-5B-0 14130351 P217958 Flrt2 Enhancer P217958 Enhancer Unique Tile chr12:96090926-96091911 (+) NM_201518 + 2838 96088088 399558 Flrt2 KIAA0405 fibronectin leucine rich transmembrane protein 2 MGI:3603594 Mm.341948 12 12 E FLRT2 23768 1 TCCCAAGCATTCTTTAAACCAGA GAACTTGGCCTCGGTCTTACTTT 1 4 8 1.1.1.1.8.4 BCBC-5B-0 14130370 P218716 Aebp2 ProximalPromoter P218716 ProximalPromoter Unique Tile chr6:140584344-140585352 (+) NM_009637;NM_001005605;NM_178803; + 284 140585068 11569 Aebp2 B230313N05Rik AE binding protein 2 MGI:1338038 Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453 6 6 G1 AEBP2 121536 0 TAGAGTTTGAGGTTAACGCCTGC GACACTTGTAGGCAGGCTGAGTT 1 4 9 1.1.1.1.9.4 BCBC-5B-0 14130389 P219838 3110056O03Rik ProximalPromoter P219838 ProximalPromoter Unique Tile chr10:80257378-80258303 (+) NM_175195 + 90 80258393 73218 3110056O03Rik AW550292 RIKEN cDNA 3110056O03 gene MGI:1920468 Mm.3285 10 10 C1 NM_025349 - 18 80258321 66094 Lsm7 0 CATGGTTGATTCTTGGAGACAGA ATGTCTAGATCGTGGAAAGCAGG 1 4 10 1.1.1.1.10.4 BCBC-5B-0 14130408 P220588 Pla2g5 Enhancer P220588 Enhancer Unique Tile chr4:138086253-138087230 (-) NM_011110 - 4056 138091286 18784 Pla2g5 PLA2 phospholipase A2, group V MGI:101899 Mm.23347 4 4 D3|4 68.0 cM PLA2G5 5322 NM_011109 + 38432 138047821 18782 Pla2g2d 0 AAAGAGGAAGTAGGGTGTGTCCC CACTTCTTCAACACCTTCTGGCT 1 4 11 1.1.1.1.11.4 BCBC-5B-0 14130427 P221710 Gabrq Enhancer P221710 Enhancer Unique Tile chrX:69079301-69080249 (+) NM_020488 + 1146 69078155 57249 Gabrq - gamma-aminobutyric acid (GABA-A) receptor, subunit theta MGI:1888498 Mm.117125 X X A6 GABRQ 55879 NM_181855 + 41837 69122086 195772 Magea9 0 GGAGACACCCAGAGAAACAGAAA GTATATACTGGTTGACTCGCGGC 1 4 12 1.1.1.1.12.4 BCBC-5B-0 14130446 P222550 Kcnk3 ProximalPromoter P222550 ProximalPromoter Unique Tile chr5:30863605-30864519 (+) NM_010608 + 231 30864750 16527 Kcnk3 TASK|cTBAK-1 potassium channel, subfamily K, member 3 MGI:1100509 Mm.332293 5 5 B|5 18.0 cM KCNK3 3777 1 AACCCCAGTTTTAGCTGTATCCC GAGAGAGCGAGAGAGAGGGAGAG 1 4 13 1.1.1.1.13.4 BCBC-5B-0 14130465 P223300 Svs5 Enhancer P223300 Enhancer Unique Tile chr2:164020948-164022008 (+) NM_009301 + 2197 164024205 20944 Svs5 BB115186|MGC130266|Svp5 seminal vesicle secretion 5 MGI:98453 Mm.140154 2 2 H3|2 94.0 cM NM_013679 + 12761 164008187 20945 Svs6 0 AAAGGCCACAGTCAACGATACAT TCACCATCCTGGGTAAGACTGTT 1 4 14 1.1.1.1.14.4 BCBC-5B-0 14130484 P224422 Pex11a Enhancer P224422 Enhancer Unique Tile chr7:79615515-79616431 (-) NM_011068 - 80 79616511 18631 Pex11a PEX11alpha peroxisomal biogenesis factor 11a MGI:1338788 Mm.20615 7 7 D2 PEX11A 8800 NM_001037927 + 244 79616675 626359 LOC626359 0 ACTTTTCAGGTGAGTCAGGTGCT AGTTAAACAGAAAGGCAGCATGG 1 4 15 1.1.1.1.15.4 BCBC-5B-0 14130503 P225172 Dync1li2 ProximalPromoter P225172 ProximalPromoter Unique Tile chr8:107332219-107333148 (-) NM_001013380 - 85 107332134 234663 Dync1li2 AA409702|C920003I06|Dncli2|Dnclic2|LIC2 dynein, cytoplasmic 1 light intermediate chain 2 MGI:107738 Mm.289583; Mm.393136; Mm.289583; Mm.393136; Mm.289583; Mm.393136; Mm.289583; Mm.393136; Mm.289583; Mm.393136; Mm.289583; Mm.393136; Mm.289583; Mm.393136; Mm.289583; Mm.393136; Mm.289583; Mm.393136; Mm.289583; Mm.393136; Mm.289583; Mm.393136; Mm.289583; Mm.393136 8 8 D3|8 50.0 cM DYNC1LI2 1783 NM_153582 - 47394 107284825 97487 Cmtm4 0 CCAGTTACAAGGGGTTCAGACAC CAAGTCCAAGCTTTGGAATGAAC 1 4 16 1.1.1.1.16.4 BCBC-5B-0 14130522 P227654 Pdx1 P227654 Pdx1 Unique Tile chr15:59627954-59628918 (+) 0 TCCAAAGTCACATGGCTAGAACA GGAAGTCTGGATTCAAGTTCCCT 1 4 17 1.1.1.1.17.4 BCBC-5B-0 14130541 P226280 Gldc Pdx1 P226280 Pdx1 Unique Tile chr19:30192020-30192923 (+) NM_138595 - 48492 30241415 104174 Gldc D030049L12Rik|D19Wsu57e glycine decarboxylase MGI:1341155 Mm.274852 19 19 C|19 25.0 cM GLDC 2731 0 TTGTTTTCACTAAGTAGGCCCCA CCTAGCTGCTTGGGAGATAGTCA 1 4 18 1.1.1.1.18.4 BCBC-5B-0 14130560 P226166 1110012J17Rik Pdx1 P226166 Pdx1 Unique Tile chr17:66279568-66280469 (+) NM_172963 - 10386 66290855 68617 1110012J17Rik D130071O13|MGC77963|mKIAA0802|t8219b25 RIKEN cDNA 1110012J17 gene MGI:1915867 Mm.33421 17 17 E1.1 KIAA0802 23255 0 ACAGCTACTCGGACCATGACTTC TGAGGCACCTTTGTTAGTTTTGG 1 4 19 1.1.1.1.19.4 BCBC-5B-0 14130579 P003231 Blank P003231 Buffer Control Negative Blank 1 4 20 1.1.1.1.20.4 BCBC-5B-0 14130219 P211478 PufferfishHuman P211478 PufferfishHuman Unique Tile chr12:87469451-87470518 (+) 1 CTTGTCAGCTGTCTGAGTCGTGT GGTGCTTTTTGACTTCAAGCTGT 1 5 1 1.1.1.1.1.5 BCBC-5B-0 14130238 P212600 miRNA P212600 miRNA unhandled condition Tile chrX:18297545-18298451 (+) mmu-mir-221 1 TCTCAATTAGTGATCAAGGGGGA ATTCCCCTATACTGGGGCATAGA 1 5 2 1.1.1.1.2.5 BCBC-5B-0 14130257 P213350 Punc Enhancer P213350 Enhancer Unique Tile chr9:64934710-64935780 (+) NM_008988 + 3414 64939194 19289 Punc 2810401C09Rik|AI851425|WI-14920 putative neuronal cell adhesion molecule MGI:1202390 Mm.392333; Mm.41529; Mm.392333; Mm.41529; Mm.392333; Mm.41529; Mm.392333; Mm.41529; Mm.392333; Mm.41529; Mm.392333; Mm.41529; Mm.392333; Mm.41529; Mm.392333; Mm.41529; Mm.392333; Mm.41529 9 9 D-E1|9 40.0 cM PUNC 9543 NM_020043 + 35170 64899540 56741 Nope 0 GAACCTGGCTTCAGAGTAGCAAA GCATACACTTGTCATGCTTCGAG 1 5 3 1.1.1.1.3.5 BCBC-5B-0 14130276 P214190 Sdc4 Enhancer P214190 Enhancer Unique Tile chr2:164131834-164132736 (-) NM_011521 - 1642 164134378 20971 Sdc4 AA959608|AW108331|Synd4|ryudocan|syndecan-4 syndecan 4 MGI:1349164 Mm.130721; Mm.3815; Mm.130721; Mm.3815; Mm.130721; Mm.3815; Mm.130721; Mm.3815; Mm.130721; Mm.3815; Mm.130721; Mm.3815; Mm.130721; Mm.3815; Mm.130721; Mm.3815; Mm.130721; Mm.3815; Mm.130721; Mm.3815 2 2 H3|2 94.0 cM SDC4 6385 NM_025575 + 19464 164152200 66460 2610042O14Rik 0 TTCTGAAGTCGAGTCCTTCCTTG GCTGGACAGGAAGAACAGGTTTA 1 5 4 1.1.1.1.4.5 BCBC-5B-0 14130295 P215312 Gng11 Enhancer P215312 Enhancer Unique Tile chr6:3957958-3958908 (+) NM_025331 + 3650 3954308 66066 Gng11 0610037B21Rik guanine nucleotide binding protein (G protein), gamma 11 MGI:1913316 Mm.25547 6 6 A1 GNG11 2791 NM_010314 + 13947 3944011 14699 Gngt1 0 CCTTACAAAAACCAGTGGCAAAG CCAGACCTGAAGAGAACAAGGAA 1 5 5 1.1.1.1.5.5 BCBC-5B-0 14130314 P216062 Dcbld2 Enhancer P216062 Enhancer Unique Tile chr16:58346941-58347879 (+) NM_028523 + 3198 58351077 73379 Dcbld2 1700055P21Rik|AW146002|CLCP1|Esdn discoidin, CUB and LCCL domain containing 2 MGI:1920629 Mm.373589 16 16 C1.2 DCBLD2 131566 0 ATGAACACCCTTCCCTTGAATTT GATGGACTTGAGGAAAACACCAC 1 5 6 1.1.1.1.6.5 BCBC-5B-0 14130333 P217184 Eif2b4 Enhancer P217184 Enhancer End Repeat Tile chr5:31467402-31468449 (+) NM_010122 - 1158 31469607 13667 Eif2b4 Eif2b eukaryotic translation initiation factor 2B, subunit 4 delta MGI:95300 Mm.29394 5 5 B1 NM_153680 + 1429 31469878 266781 Snx17 0 ATAGAACTGGACGTACCTGCTGC CTCTGATGAATTCCAGCCTCAGT 1 5 7 1.1.1.1.7.5 BCBC-5B-0 14130352 P218024 Pax6 ChickenHuman P218024 ChickenHuman Unique Tile chr2:105470771-105471805 (-) NM_013627 + 1022 105469749 18508 Pax6 1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey paired box gene 6 MGI:97490 Mm.3608 2 2 E3|2 58.0 cM PAX6 5080 0 GATTAAGCCCTGGTTGTTTCCTC TTGGAAAATCTCTCACTCAAGCC 1 5 8 1.1.1.1.8.5 BCBC-5B-0 14130371 P218692 Ccr8 ProximalPromoter P218692 ProximalPromoter Unique Tile chr9:119941522-119942477 (+) NM_007720 + 27 119942504 12776 Ccr8 Cmkbr8|MGC123958|MGC123959|mCCR8 chemokine (C-C motif) receptor 8 MGI:1201402 Mm.139129 9 9 F4 CCR8 1237 NM_144793 + 16619 119959096 208638 BC010801 0 TTTGAACTGAGGTCTCCATGGTT TGAGGGCTGTATTCACAGATTGA 1 5 9 1.1.1.1.9.5 BCBC-5B-0 14130390 P219814 Dio1 Enhancer P219814 Enhancer Unique Tile chr4:106803246-106804189 (-) NM_007860 - 886 106805075 13370 Dio1 5DI|D1|ITDI1|MGC107659|TXDI1 deiodinase, iodothyronine, type I MGI:94896 Mm.148342 4 4 C7|4 48.7 cM DIO1 1733 NM_145550 + 8173 106812362 230584 Yipf1 0 ATAGTGGTCTGTTGGGTTCTGGA CTGATCCTGAGTCTGACCTGACA 1 5 10 1.1.1.1.10.5 BCBC-5B-0 14130409 P220564 Iltifb ProximalPromoter P220564 ProximalPromoter Unique Tile chr10:117697935-117698940 (-) NM_054079 - 74 117698009 116849 Iltifb IL-TIFb|MGC129416|MGC129417 interleukin 10-related T cell-derived inducible factor beta MGI:2151139 Mm.213193; Mm.429775; Mm.213193; Mm.429775; Mm.213193; Mm.429775; Mm.213193; Mm.429775 10 10 D2 0 TGTAAGTCTGTGCACCAAGTGCT CAAAGTCCCCATAAGGGAAAAAC 1 5 11 1.1.1.1.11.5 BCBC-5B-0 14130428 P221404 Sema6b Enhancer P221404 Enhancer Duplication Tile chr17:55729158-55730112 (-) NM_013662 - 3000 55726158 20359 Sema6b MGC143995|MGC143996|Sema|Seman|VIb|semaZ sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B MGI:1202889 Mm.8029 17 17 D SEMA6B 10501 NM_029796 - 13919 55715239 76905 Lrg1 0 GGACCTATTTCCTGCCTTTGTCT GCTGACTGTAATCCTCTGCTTCC 1 5 12 1.1.1.1.12.5 BCBC-5B-0 14130447 P222526 D17H6S53E ProximalPromoter P222526 ProximalPromoter Unique Tile chr17:34734107-34735034 (+) NM_033477 + 136 34735170 114585 D17H6S53E G4|NG34 DNA segment, Chr 17, human D6S53E MGI:90673 Mm.378648 17 17 B1|17 19.02 cM C6orf47 57827 NM_032460 + 3100 34731007 81845 Bat4 0 GATCTCTTTTGAGTTCAAGGCCA ATTCAGAAAGGACTCACACAGCC 1 5 13 1.1.1.1.13.5 BCBC-5B-0 14130466 P223276 Lsr ProximalPromoter P223276 ProximalPromoter Unique Tile chr7:30682372-30683275 (-) NM_017405 - 408 30681964 54135 Lsr Lisch7 lipolysis stimulated lipoprotein receptor MGI:1927471 Mm.4067; Mm.421412; Mm.4067; Mm.421412; Mm.4067; Mm.421412; Mm.4067; Mm.421412; Mm.4067; Mm.421412; Mm.4067; Mm.421412; Mm.4067; Mm.421412 7 7 B1 LSR 51599 NM_175240 + 2527 30685802 76415 Tmem162 0 AACAGGAAGGGAATTCTGGTAGC AGCCACCTGTTGCTCTAGTCAAA 1 5 14 1.1.1.1.14.5 BCBC-5B-0 14130485 P224398 Cx3cl1 Enhancer P224398 Enhancer Unique Tile chr8:97662113-97663191 (+) NM_009142 + 759 97661354 20312 Cx3cl1 AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1 chemokine (C-X3-C motif) ligand 1 MGI:1097153 Mm.103711 8 8 D1|8 46.0 cM CX3CL1 6376 NM_009137 + 27288 97634825 20299 Ccl22 0 TTTTGACCATTCCACCTCCTTTA AAACCTCGACCAACAGAGAAGTG 1 5 15 1.1.1.1.15.5 BCBC-5B-0 14130504 P225238 Olfr708 ProximalPromoter P225238 ProximalPromoter Unique Tile chr7:106706846-106707895 (+) NM_001011542 + 47 106707848 258173 Olfr708 MOR260-6P olfactory receptor 708 MGI:3030542 Mm.389968 7 7 E3 NM_001005570 - 21090 106685756 194433 Olfr707 0 GCTAGGCACCATGCAAATTTAAG CCCAGGAAGATGAATTCTGTCAC 1 5 16 1.1.1.1.16.5 BCBC-5B-0 14130523 P227630 Pdx1 P227630 Pdx1 Unique Tile chr7:137079299-137080260 (+) 0 AGGTCAGGAACTGATGACACTGG TCTGGTGTTAAGGCAATTTGTCA 1 5 17 1.1.1.1.17.5 BCBC-5B-0 14130542 P226256 Srp68 Pdx1 P226256 Pdx1 Unique Tile chr11:116071821-116072724 (+) NM_146032 - 6621 116079345 217337 Srp68 2610024I03Rik|MGC38208 signal recognition particle 68 MGI:1917447 Mm.29655 11 11 E2 SRP68 6730 NM_025276 - 17734 116054087 14027 Evpl 0 GCCTTTCTGTCTCTACTACCCCC AACAACCAAACCCCCTTTCTTTA 1 5 18 1.1.1.1.18.5 BCBC-5B-0 14130561 P226142 Cryba2 Pdx1 P226142 Pdx1 Unique Tile chr1:74835096-74835997 (+) NM_021541 - 8754 74826342 12958 Cryba2 E130107M19Rik crystallin, beta A2 MGI:104336 Mm.86656 1 1 C3|1 40.8 cM CRYBA2 1412 NM_153111 - 16470 74818626 260298 Fev 1 CCACTGGCCAAACTAAGAACAAC CTTGACCCCACATAGCTTCTTGT 1 5 19 1.1.1.1.19.5 BCBC-5B-0 14130580 P003135 Blank P003135 Buffer Control Negative Blank 1 5 20 1.1.1.1.20.5 BCBC-5B-0 14130220 P211454 PufferfishHuman P211454 PufferfishHuman Unique Tile chr13:72771006-72771989 (+) 0 ACTAACCCCAGATCCAACCATTT GGTGAGAGCATATGGGATGAAAG 1 6 1 1.1.1.1.1.6 BCBC-5B-0 14130239 P212576 miRNA P212576 miRNA Unique Tile chr14:53900094-53901005 (+) mmu-mir-208 1 GTTGTAGGAGATTGTGAGCCACC AGCTAAGAGGGCTGAGACTGGTT 1 6 2 1.1.1.1.2.6 BCBC-5B-0 14130258 P213416 Cxcl2 Enhancer P213416 Enhancer Unique Tile chr5:91976674-91977765 (+) NM_009140 + 1333 91979098 20310 Cxcl2 CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2 chemokine (C-X-C motif) ligand 2 MGI:1340094 Mm.4979 5 5 E2|5 51.0 cM CXCL2 2920 NM_008176 + 10165 91966509 14825 Cxcl1 0 TGCTGTAGGAACCCGGTACTTTA ATAGACACCCACCTGTGACCAAT 1 6 3 1.1.1.1.3.6 BCBC-5B-0 14130277 P214166 Sod1 Enhancer P214166 Enhancer Unique Tile chr16:90109767-90110711 (+) NM_011434 + 109 90109658 20655 Sod1 B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|MGC107553|SODC|Sod-1 superoxide dismutase 1, soluble MGI:98351 Mm.276325; Mm.423484; Mm.276325; Mm.423484; Mm.276325; Mm.423484; Mm.276325; Mm.423484; Mm.276325; Mm.423484; Mm.276325; Mm.423484; Mm.276325; Mm.423484; Mm.276325; Mm.423484; Mm.276325; Mm.423484; Mm.276325; Mm.423484; Mm.276325; Mm.423484; Mm.276325; Mm.423484; Mm.276325; Mm.423484; Mm.276325; Mm.423484 16 16 B5-C3|16 61.0 cM SOD1 6647 1 AACCATCCACTTCGAGCAGAA CCGAACTTCGTCTTTCTCACAGT 1 6 4 1.1.1.1.4.6 BCBC-5B-0 14130296 P215288 Abhd12 Enhancer P215288 Enhancer Unique Tile chr2:150537744-150538662 (-) NM_024465 - 3733 150534011 76192 Abhd12 6330583M11Rik|AI431047|AW547313 abhydrolase domain containing 12 MGI:1923442 Mm.112632 2 2 G3 ABHD12 26090 0 TCATGTCTTCAAATTTTCCCACC CTCATACCACATCTGGTCCTTCC 1 6 5 1.1.1.1.5.6 BCBC-5B-0 14130315 P216038 Hspa12b Enhancer P216038 Enhancer Unique Tile chr2:130815596-130816510 (+) NM_028306 + 2342 130818852 72630 Hspa12b 2700081N06Rik heat shock protein 12B MGI:1919880 Mm.277465 2 2 F3 HSPA12B 116835 NM_026091 - 28621 130845131 67326 1700037H04Rik 0 GATAGGACAGACAGGCTGCAAGT GCTCTCTAAGCCCATTGATGCTA 1 6 6 1.1.1.1.6.6 BCBC-5B-0 14130334 P216878 Tm6sf1 Enhancer P216878 Enhancer Unique Tile chr7:81733015-81734039 (+) NM_145375 + 372 81732643 107769 Tm6sf1 AI428514|BC023123|C630016D09Rik|MGC25583 transmembrane 6 superfamily member 1 MGI:1933209 Mm.221412; Mm.392934; Mm.221412; Mm.392934; Mm.221412; Mm.392934; Mm.221412; Mm.392934; Mm.221412; Mm.392934; Mm.221412; Mm.392934; Mm.221412; Mm.392934; Mm.221412; Mm.392934; Mm.221412; Mm.392934; Mm.221412; Mm.392934; Mm.221412; Mm.392934; Mm.221412; Mm.392934 7 7 D1 TM6SF1 53346 NM_146193 - 30038 81702977 83962 Btbd1 0 GGTCACCTACATCTTCAACCACC TGACAGGCACAAAACATCTGACT 1 6 7 1.1.1.1.7.6 BCBC-5B-0 14130353 P218000 Cnot6 Enhancer P218000 Enhancer Unique Tile chr11:49554714-49555664 (-) NM_212484 - 469 49556133 104625 Cnot6 A230103N10Rik|AA407540|AW456442|CCR4|MGC98472 CCR4-NOT transcription complex, subunit 6 MGI:2144529 Mm.247113 11 11 B1.2 CNOT6 57472 NM_170727;NM_054037; + 47678 49507036 68662 Scgb3a1 0 ACTTAGGAGTTCTCGGAGTGACG TCAAAAGACTGGCAGCAATTACA 1 6 8 1.1.1.1.8.6 BCBC-5B-0 14130372 P218668 Zfp37 ProximalPromoter P218668 ProximalPromoter Unique Tile chr4:61694789-61695793 (-) NM_009554 - 1 61694788 22696 Zfp37 AV042165|Tzn|Zfp-37 zinc finger protein 37 MGI:99181 Mm.5011 4 4 B3|4 30.6 cM ZFP37 7539 0 GTTCTGTTCTTTCTCCCGCTGTA GATGGAGTCAGAGGCCGATATG 1 6 9 1.1.1.1.9.6 BCBC-5B-0 14130391 P219790 Olfr73 ProximalPromoter P219790 ProximalPromoter Unique Tile chr2:87835914-87836919 (-) NM_054090 - 62 87835976 117004 Olfr73 MOR174-9|fascin-1|mOR-EG olfactory receptor 73 MGI:2151908 Mm.196680 2 2 D NM_146848 + 10352 87825562 258845 Olfr1161 0 TGCCTATAATCTTGGGTGCTTGT ATAATCTGAGAAGCCCAAGAGGG 1 6 10 1.1.1.1.10.6 BCBC-5B-0 14130410 P220630 Ptger2 ProximalPromoter P220630 ProximalPromoter Unique Tile chr14:43909434-43910356 (+) NM_008964 + 111 43910467 19217 Ptger2 EP2|Ptgerep2 prostaglandin E receptor 2 (subtype EP2) MGI:97794 Mm.4630 14 14 C1|14 16.4 cM PTGER2 5732 0 ATCCATGCCCTACAAACTTAGCA GAAGCCTTTAGCCCTAGCAGAAG 1 6 11 1.1.1.1.11.6 BCBC-5B-0 14130429 P221380 Zfp105 Enhancer P221380 Enhancer Unique Tile chr9:122768977-122769920 (+) NM_009544 + 1855 122771775 22646 Zfp105 AW557864 zinc finger protein 105 MGI:1277119 Mm.290595 9 9 F4|9 72.0 cM ZNF35 7584 NM_025419 - 29736 122799656 66202 1110059G10Rik 0 ATGCAGAGCAGAGAGAAGCCTTA CCCCACACACTCATGGTAATTTT 1 6 12 1.1.1.1.12.6 BCBC-5B-0 14130448 P222502 2310010M24Rik Enhancer P222502 Enhancer Unique Tile chr2:49610101-49610932 (+) NM_027990 + 405 49609696 71897 2310010M24Rik AW049525 RIKEN cDNA 2310010M24 gene MGI:1919147 Mm.41381 2 2 C1.1 LOC130576 130576 0 TCCTGGCTTTTGACTTTGTTGTT AGGAGAGAACTTGTCCTGAGAGC 1 6 13 1.1.1.1.13.6 BCBC-5B-0 14130467 P223252 Trp53bp1 ProximalPromoter P223252 ProximalPromoter Unique Tile chr2:120962903-120963848 (-) NM_013735 - 121 120962782 27223 Trp53bp1 53BP1|MGC100303|m53BP1 transformation related protein 53 binding protein 1 MGI:1351320 Mm.215389 2 2 E5 TP53BP1 7158 1 TTTCAAGTGCTAAACTGGGCATT CTATGGATGATAGGTGGCTGAGG 1 6 14 1.1.1.1.14.6 BCBC-5B-0 14130486 P224092 Ankrd34 Enhancer P224092 Enhancer Unique Tile chr3:96683032-96684103 (-) NM_001024851 + 971 96682061 545554 Ankrd34 - ankyrin repeat domain 34 MGI:3617846 Mm.267664 3 3 F2.1 ANKRD34 284615 NM_027241 - 3484 96679548 69870 Polr3gl 0 CTTCTCTCTAGCAGCCCTGGAC GTTACGACGACCCTCAGAACAAG 1 6 15 1.1.1.1.15.6 BCBC-5B-0 14130505 P225214 P2ry14 ProximalPromoter P225214 ProximalPromoter Unique Tile chr3:59218648-59219559 (-) NM_133200;NM_001008497; - 95 59218553 140795 P2ry14 A330108O13Rik|Gpr105|P2Y14 purinergic receptor P2Y, G-protein coupled, 14 MGI:2155705 Mm.240059 3 3 D|3 29.5 cM P2RY14 9934 NM_177165 - 21866 59241425 320463 F630111L10Rik 0 TTGAACCACTCTCTGCTCATCTG ACTCCTTTTAACCCCATCTCTGC 1 6 16 1.1.1.1.16.6 BCBC-5B-0 14130524 P227606 Sgk2 Pdx1 P227606 Pdx1 Unique Tile chr2:162659372-162660330 (+) NM_013731 + 18656 162678986 27219 Sgk2 AI098171|AW146006|Sgkl serum/glucocorticoid regulated kinase 2 MGI:1351318 Mm.26462 2 2 H3 SGK2 10110 NM_026499 + 36387 162622985 67996 Sfrs6 0 TGAAAGCATGCCTAGAACCTACC TTCTGAGCCCTCTCTTCTCCTTT 1 6 17 1.1.1.1.17.6 BCBC-5B-0 14130543 P226232 Rarres2 Pdx1 P226232 Pdx1 Unique Tile chr6:48493823-48494725 (+) NM_027852 - 7531 48502256 71660 Rarres2 0610007L05Rik|AI303516 retinoic acid receptor responder (tazarotene induced) 2 MGI:1918910 Mm.28231 6 6 B2.3 RARRES2 5919 NM_177736 + 9286 48484537 243371 Lrrc61 0 TGACAAATGGTGCATCCATACAG ACTTGTCCTGTCTCCACATCCTC 1 6 18 1.1.1.1.18.6 BCBC-5B-0 14130562 P226208 Pdx1 P226208 Pdx1 Unique Tile chr14:28281131-28282033 (+) 0 AACCCATGGCAAATGTCATCTTA TACTGCTTTAGTTTTGCTCCCCA 1 6 19 1.1.1.1.19.6 BCBC-5B-0 14130581 P003135 Blank P003135 Buffer Control Negative Blank 1 6 20 1.1.1.1.20.6 BCBC-5B-0 14130221 P211430 PufferfishHuman P211430 PufferfishHuman Unique Tile chr18:81024408-81025361 (-) 2 TGATAACATTCTTGGCCACCTCT CAACCTGCAACAGCTCACATATC 1 7 1 1.1.1.1.1.7 BCBC-5B-0 14130240 P212270 miRNA P212270 miRNA Unique Tile chr18:10777166-10778089 (+) mmu-mir-133a-1 1 TTTAGCACCCACACAACAAACTG CACATCAACAGGACGACTTTCAC 1 7 2 1.1.1.1.2.7 BCBC-5B-0 14130259 P213392 Rpl30 Enhancer P213392 Enhancer Unique Tile chr15:34386589-34387513 (-) NM_009083 - 154 34387667 19946 Rpl30 MGC106425|MGC107559 ribosomal protein L30 MGI:98037 Mm.247113; Mm.358632; Mm.247113; Mm.358632; Mm.247113; Mm.358632; Mm.247113; Mm.358632; Mm.247113; Mm.358632; Mm.247113; Mm.358632; Mm.247113; Mm.358632; Mm.247113; Mm.358632; Mm.247113; Mm.358632; Mm.247113; Mm.358632; Mm.247113; Mm.358632; Mm.247113; Mm.358632; Mm.247113; Mm.358632 15 15 B3.1|15 14.7 cM RPL30 6156 NM_173421 + 10390 34397903 239368 BC030476 0 ACGTTTCAGGGTCTCAAAGTGAA CACATACCAACAGTGCTCCAAAG 1 7 3 1.1.1.1.3.7 BCBC-5B-0 14130278 P214142 Sel1h Enhancer P214142 Enhancer Unique Tile chr12:92253444-92254357 (-) NM_001039089;NM_011344; - 329 92254686 20338 Sel1h AW493766|KIAA4137|mKIAA4137 Sel1 (suppressor of lin-12) 1 homolog (C. elegans) MGI:1329016 Mm.250605 12 12 E SEL1L 6400 0 GAAACTGGACATAAGGAAGGGCT ACATTTGAAAGGGTGTCTCCAAA 1 7 4 1.1.1.1.4.7 BCBC-5B-0 14130297 P215264 1200011M11Rik Enhancer P215264 Enhancer Unique Tile chr11:86905201-86906141 (-) NM_024262 - 2229 86902972 74133 1200011M11Rik - RIKEN cDNA 1200011M11 gene MGI:1921383 Mm.23257 11 11 C C17orf71 55181 NM_025638 - 14958 86890243 66569 Gdpd1 1 TGTTGGAAAGTCATCAGACTGGA AGATGTGTTGTGATGGTACACGG 1 7 5 1.1.1.1.5.7 BCBC-5B-0 14130316 P216104 Gbe1 Enhancer P216104 Enhancer Unique Tile chr16:70197121-70198063 (+) NM_028803 + 346 70196775 74185 Gbe1 2310045H19Rik|2810426P10Rik|D16Ertd536e glucan (1,4-alpha-), branching enzyme 1 MGI:1921435 Mm.29201 16 16 C2|16 41.9 cM GBE1 2632 0 GAGTTCCTGAACTTTTCTGCTGC TGTAAACTCTGGAATGAGCAGTT 1 7 6 1.1.1.1.6.7 BCBC-5B-0 14130335 P216854 Gyltl1b Enhancer P216854 Enhancer Unique Tile chr2:92171594-92172494 (+) NM_172670 - 134 92171728 228366 Gyltl1b 5730485C17Rik|AI891893|KIAA4105|Largel|mKIAA4105 glycosyltransferase-like 1B MGI:2443769 Mm.31158 2 2 E1 GYLTL1B 120071 NM_145122 + 3842 92176336 18633 Pex16 0 GAACAGGAAGAAGCCAACCACTA GTGGAGAGAAAAGGGAGGAAGAA 1 7 7 1.1.1.1.7.7 BCBC-5B-0 14130354 P217976 D330050I23Rik Enhancer P217976 Enhancer Unique Tile chr15:60653186-60654093 (-) NM_207269 - 1070 60652116 399603 D330050I23Rik BF642811 RIKEN cDNA D330050I23 gene MGI:3026924 Mm.230853; Mm.383298; Mm.230853; Mm.383298; Mm.230853; Mm.383298; Mm.230853; Mm.383298; Mm.230853; Mm.383298; Mm.230853; Mm.383298 15 15 D1 NM_177166 + 4660 60658753 320469 9930014A18Rik 0 CCAAGGTAGCCTAGCAGGTTCTT GGTATTGAGCCTGCGATACAAAC 1 7 8 1.1.1.1.8.7 BCBC-5B-0 14130373 P218644 Igf2bp2 ProximalPromoter P218644 ProximalPromoter Unique Tile chr16:22078188-22079221 (-) NM_183029 - 87 22078275 319765 Igf2bp2 C330012H03Rik|IMP-2|Imp2|Neilsen insulin-like growth factor 2 mRNA binding protein 2 MGI:1890358 Mm.294740 16 16 B1 IGF2BP2 10644 1 CGTTCTTTTCTGGAGCCCTTTAT CTCAGGTTCCCAATGTACAGCTT 1 7 9 1.1.1.1.9.7 BCBC-5B-0 14130392 P219484 ProximalPromoter P219484 ProximalPromoter Unique Tile chr11:30737677-30738627 (+) 0 TCAGGTCATTTCTACCAAGAGGC TCAGTTCAGGAAGTTTGGTGACA 1 7 10 1.1.1.1.10.7 BCBC-5B-0 14130411 P220606 Osr1 ProximalPromoter P220606 ProximalPromoter Unique Tile chr12:9599566-9600483 (+) NM_011859 + 21 9600504 23967 Osr1 Odd1|Osr odd-skipped related 1 (Drosophila) MGI:1344424 Mm.45055 12 12 A1.1|12 1.0 cM OSR1 130497 1 GCTGTGTAAGAAGCAGACAGCAA ACGTCTCACTCATCCCTTAGCAC 1 7 11 1.1.1.1.11.7 BCBC-5B-0 14130430 P221356 Sash1 ProximalPromoter P221356 ProximalPromoter Unique Tile chr10:8576582-8577306 (-) NM_175155 - 507 8576075 70097 Sash1 1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790 SAM and SH3 domain containing 1 MGI:1917347 Mm.338275 10 10 A1 SASH1 23328 0 CCTCTCCACTCCACCTCCTTAAT GCTTTGCATGGAAATGAGCCT 1 7 12 1.1.1.1.12.7 BCBC-5B-0 14130449 P222478 Ppnr ProximalPromoter P222478 ProximalPromoter Unique Tile chr19:55898734-55899811 (+) NM_012022 + 670 55899141 26930 Ppnr mp41 per-pentamer repeat gene MGI:1349458 Mm.139815 19 19 D2 0 GCATTGAAAGAGGTTGGATTTTG CCATGAGTTAAAACATGATGCCA 1 7 13 1.1.1.1.13.7 BCBC-5B-0 14130468 P223318 Olfr433 ProximalPromoter P223318 ProximalPromoter Unique Tile chr1:175877584-175878621 (+) NM_146717 + 5 175878626 258712 Olfr433 MOR123-1 olfactory receptor 433 MGI:3030267 Mm.223146 1 - NM_146716 + 8428 175887049 258711 Olfr432 0 CCAACTGCCAAATCTTGTTCTTC CAAGGAGGAGGTGGAGTTAAGGT 1 7 14 1.1.1.1.14.7 BCBC-5B-0 14130487 P224068 Parp2 Enhancer P224068 Enhancer Unique Tile chr14:49732151-49733107 (+) NM_009632 + 2255 49729896 11546 Parp2 Adprt2|Adprtl2|Aspartl2|C78626|PARP-2 poly (ADP-ribose) polymerase family, member 2 MGI:1341112 Mm.281482 14 14 C1|14 19.5 cM PARP2 10038 NM_177625 - 24705 49707446 219022 Ttc5 0 CAAAAGACAATCGAGGTAATGGG AGGAGTCACACAGAGAAACCCTG 1 7 15 1.1.1.1.15.7 BCBC-5B-0 14130506 P225190 9130008F23Rik ProximalPromoter P225190 ProximalPromoter Unique Tile chr17:40344006-40345046 (-) NM_027834 - 30 40344036 71583 9130008F23Rik - RIKEN cDNA 9130008F23 gene MGI:1918833 Mm.158733 17 17 C C6orf141 135398 0 CGTAAACTCTGAAGCGCCTTTTA GGGTAGATAGTTCATGCGTCCAC 1 7 16 1.1.1.1.16.7 BCBC-5B-0 14130525 P227582 9630033F20Rik Pdx1 P227582 Pdx1 Unique Tile chr6:127056453-127057409 (+) NM_177003 - 17746 127075155 319801 9630033F20Rik AA793651|AI595337|C79710|C85509 RIKEN cDNA 9630033F20 gene MGI:2442752 Mm.101836 6 6 F3 C12orf5 57103 NM_022657 + 17933 127038520 64654 Fgf23 2 AGAAACCCTGTCTCGAAAAACCT TGTGAACACAGTCCCAGCTCTTA 1 7 17 1.1.1.1.17.7 BCBC-5B-0 14130544 P227078 Pdx1 P227078 Pdx1 Unique Tile chr9:79003782-79004709 (+) 0 TCAACCTGACATAAAACAAGCCA ATAGGGTTGCAGATCCCTTTAGC 1 7 18 1.1.1.1.18.7 BCBC-5B-0 14130563 P226184 A930013K19Rik Pdx1 P226184 Pdx1 Unique Tile chr5:35390362-35391263 (+) NM_172708 + 16418 35373944 231134 A930013K19Rik Dok-7|MGC107606 RIKEN cDNA A930013K19 gene MGI:3584043 Mm.205483 5 5 B2 NM_013587 - 31295 35422558 16976 Lrpap1 0 GGTGGTAGATGGAGGACAGGAG GCAGAAGGAAAGAATGGCATGTA 1 7 19 1.1.1.1.19.7 BCBC-5B-0 14130582 P003327 Blank P003327 Buffer Control Negative Blank 1 7 20 1.1.1.1.20.7 BCBC-5B-0 14130222 P211496 Mab21l1 PufferfishHuman P211496 PufferfishHuman Unique Tile chr3:55828962-55829910 (+) NM_010750 + 40543 55870453 17116 Mab21l1 AW047968 mab-21-like 1 (C. elegans) MGI:1333773 Mm.384353 3 3 E3-F1 MAB21L1 4081 1 CCCCTTCACCAGGTAAGAAAAAG GGCACTTTCTAGTCTTGTCAGCC 1 8 1 1.1.1.1.1.8 BCBC-5B-0 14130241 P212246 miRNA P212246 miRNA Unique Tile chr2:26415089-26415995 (-) mmu-mir-126 0 AATAGAGGATGATTAGGGGTCGC CCAGGCACTTCTGAGAGTTCATT 1 8 2 1.1.1.1.2.8 BCBC-5B-0 14130260 P213368 Rbbp7 Enhancer P213368 Enhancer Unique Tile chrX:158104739-158105764 (+) NM_009031 + 176 158104563 245688 Rbbp7 AA409861|AI173248|AU019541|BB114024|mRbAp46 retinoblastoma binding protein 7 MGI:1194910 Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732; Mm.249161; Mm.270186; Mm.371732 X X F4 RBBP7 5931 1 TTGACTAGCGAGAGAGAAGTCCG ACCAGGTCATACAGAAACGGTGT 1 8 3 1.1.1.1.3.8 BCBC-5B-0 14130279 P214118 Rnf2 Enhancer P214118 Enhancer Unique Tile chr1:153261744-153262835 (-) NM_011277 - 179 153263014 19821 Rnf2 AI326319|AI450156|AU019207|Ring1B|dinG ring finger protein 2 MGI:1101759 Mm.31512 1 1 G2 RNF2 6045 1 GTGTGTGTGTGTGTGTGTGTCC TCAAAATACTGAATGGGTCGCTT 1 8 4 1.1.1.1.4.8 BCBC-5B-0 14130298 P214958 Sec61a2 Enhancer P214958 Enhancer Unique Tile chr2:5811537-5812469 (-) NM_021305 - 99 5812568 57743 Sec61a2 - Sec61, alpha subunit 2 (S. cerevisiae) MGI:1931071 Mm.21435 2 2 A1 SEC61A2 55176 NM_016918 + 48973 5762564 53893 Nudt5 0 AGTGGAGTCGCTTACTCCTTGG AACTGTCTAGAATCGCCTCCCTT 1 8 5 1.1.1.1.5.8 BCBC-5B-0 14130317 P216080 Rap2b Enhancer P216080 Enhancer Unique Tile chr3:61450365-61451391 (+) NM_028712 + 1110 61452501 74012 Rap2b 4021402C18Rik|AA408554 RAP2B, member of RAS oncogene family MGI:1921262 Mm.273288; Mm.422674; Mm.273288; Mm.422674; Mm.273288; Mm.422674; Mm.273288; Mm.422674; Mm.273288; Mm.422674; Mm.273288; Mm.422674; Mm.273288; Mm.422674; Mm.273288; Mm.422674; Mm.273288; Mm.422674; Mm.273288; Mm.422674; Mm.273288; Mm.422674; Mm.273288; Mm.422674; Mm.273288; Mm.422674; Mm.273288; Mm.422674; Mm.273288; Mm.422674; Mm.273288; Mm.422674; Mm.273288; Mm.422674; Mm.273288; Mm.422674; Mm.273288; Mm.422674 3 3 E1 RAP2B 5912 0 GCCATAATGTAGATGAGGAAGCG TGATCTTAGCAGGAAGAAGGCTG 1 8 6 1.1.1.1.6.8 BCBC-5B-0 14130336 P216830 BC019731 Enhancer P216830 Enhancer Unique Tile chr5:140064172-140065142 (-) NM_144914 - 1574 140066716 231832 BC019731 MGC30809|MGC37596 cDNA sequence BC019731 MGI:2385897 Mm.46582 5 5 G2 MGC9712 202915 NM_025604 - 14159 140079301 66506 1810042K04Rik 1 GGTCAGAGCTTAATCCCAGTTCA TGGATCAGCCTACGCTTCTAGTC 1 8 7 1.1.1.1.7.8 BCBC-5B-0 14130355 P217952 Plec1 Enhancer P217952 Enhancer Unique Tile chr15:76031924-76032824 (-) NM_201392;NM_201385;NM_011117;NM_201394;NM_201388;NM_201393;NM_201389;NM_201390;NM_201387;NM_201391;NM_201386; - 752 76033576 18810 Plec1 AA591047|AU042537|EBS1|PCN|PLTN plectin 1 MGI:1277961 Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750; Mm.234912; Mm.373750 15 15 D3|15 44.0 cM PLEC1 5339 NM_144848 - 27028 76004896 223650 Eppk1 0 AGGGATGGGAAGTGACTGTAGGT AAGTCCCTCCCACATACTAAGGC 1 8 8 1.1.1.1.8.8 BCBC-5B-0 14130374 P218710 Olfr421 ProximalPromoter P218710 ProximalPromoter Unique Tile chr1:175987210-175988192 (+) NM_146720 + 0 175988192 258715 Olfr421 MOR105-3 olfactory receptor 421 MGI:3030255 Mm.377650 1 - NM_146305 + 7257 175995449 258302 Olfr420 0 GTGGAAAACACAGGAATGATGGT ATCACCATCTGAGTGACCTGTGA 1 8 9 1.1.1.1.9.8 BCBC-5B-0 14130393 P219460 B3galt5 ProximalPromoter P219460 ProximalPromoter Unique Tile chr16:96377564-96378529 (+) NM_033149 + 7412 96385941 93961 B3galt5 1190002B21Rik|AU045265|b3Galt-V UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5 MGI:2136878 Mm.154783 16 16 C4 B3GALT5 10317 0 CTACAGGCCAATGCTTATCTGCT ATCTGCATCAGAGGACTTTCCAC 1 8 10 1.1.1.1.10.8 BCBC-5B-0 14130412 P220582 Slc24a5 ProximalPromoter P220582 ProximalPromoter Unique Tile chr2:124758658-124759584 (+) NM_175034 + 17 124759567 317750 Slc24a5 F630045L20Rik|JSX|NCX5 solute carrier family 24, member 5 MGI:2677271 Mm.330538 2 2 F1 SLC24A5 283652 NM_010852 - 48730 124808314 17876 Myef2 1 CGGAAGAGACTGTCCTACAAAGG GAGCAAGGGAGACTTATGCTGAA 1 8 11 1.1.1.1.11.8 BCBC-5B-0 14130431 P221332 Capn1 Enhancer P221332 Enhancer Unique Tile chr19:6012978-6014070 (-) NM_007600 - 1081 6015151 12333 Capn1 Capa-1|Capa1|mu-calpin calpain 1 MGI:88263 Mm.6221 19 19 A|19 3.0 cM CAPN1 823 NM_198650 - 26835 5986143 381203 Slc22a20 0 TGTAGGAACTGATGTCAAACCCC TGGGGCACTCAGCATAGAATAAT 1 8 12 1.1.1.1.12.8 BCBC-5B-0 14130450 P222172 Pp11r Enhancer P222172 Enhancer Unique Tile chr15:97547750-97548649 (-) NM_008902 - 535 97549184 19011 Pp11r Tcl-30 placental protein 11 related MGI:97746 Mm.1001 15 15 F1|15 56.8 cM P11 8909 NM_028003 - 13891 97533859 71919 D15Ertd682e 0 CCAGAAGAATCAATCTGGACCTG TAGAGAGAGGCAGAGCACCAACT 1 8 13 1.1.1.1.13.8 BCBC-5B-0 14130469 P223294 D630042P16Rik ProximalPromoter P223294 ProximalPromoter Unique Tile chr6:112353882-112354845 (-) NM_175525 - 82 112353800 243612 D630042P16Rik Fls485 RIKEN cDNA D630042P16 gene MGI:2443733 Mm.122653 6 6 E3 C3orf32 51066 1 AGGACAGCCAGGACTACACAGAG ATAACAGAGGCAAAGCCACCATA 1 8 14 1.1.1.1.14.8 BCBC-5B-0 14130488 P224044 Slc22a12 Enhancer P224044 Enhancer Unique Tile chr19:6546184-6547158 (-) NM_009203 - 3178 6543006 20521 Slc22a12 AI987855|OAT4L|Rst|Slc22al2|URAT1 solute carrier family 22 (organic anion/cation transporter), member 12 MGI:1195269 Mm.391146 19 19 A SLC22A12 116085 0 GGAGGAGGAGAGAATGAGAGACC TCCCTAATATCCTGTGGTGATGG 1 8 15 1.1.1.1.15.8 BCBC-5B-0 14130507 P225166 2310009E04Rik ProximalPromoter P225166 ProximalPromoter Unique Tile chr4:95070506-95071419 (+) NM_029347 + 101 95071520 75578 2310009E04Rik - RIKEN cDNA 2310009E04 gene MGI:1922828 Mm.276098 4 4 C5 0 CTTTCCCCCTATCCTCCCTTTAT GCCTCATGCAATTTAGTTTTTGG 1 8 16 1.1.1.1.16.8 BCBC-5B-0 14130526 P227648 Pdx1 P227648 Pdx1 Unique Tile chr4:125464891-125465854 (+) 0 ACTCAGAACAGGAGGTTCATTGG CTCACACTGTCCCCTTTCTTTTG 1 8 17 1.1.1.1.17.8 BCBC-5B-0 14130545 P227054 Pdx1 P227054 Pdx1 Unique Tile chr14:39474016-39474943 (+) 0 GGCATCAGGAGCTCTGAGTTTTA CAAACCTGTGAAGACAGATGCAC 1 8 18 1.1.1.1.18.8 BCBC-5B-0 14130564 P226160 Pdx1 P226160 Pdx1 Unique Tile chr14:74929202-74930103 (+) 0 GCTTAGACATGCAGGTACGGACT CTTTGAACAAAGTCATGTGGCAG 1 8 19 1.1.1.1.19.8 BCBC-5B-0 14130583 P003327 Blank P003327 Buffer Control Negative Blank 1 8 20 1.1.1.1.20.8 BCBC-5B-0 14130223 P211472 PufferfishHuman P211472 PufferfishHuman Unique Tile chr13:72494918-72495841 (+) 0 TTTTGCAGTCAAGCTGGTAATGA ACATGCATAGTCTGTGAAAGCGA 1 9 1 1.1.1.1.1.9 BCBC-5B-0 14130242 P212222 miRNA P212222 miRNA Unique Tile chr18:65376018-65377116 (-) mmu-mir-122a 0 AGGGTGCTCTCTAGCAAGGAACT GCTGTGATAAACACCATCACCAA 1 9 2 1.1.1.1.2.9 BCBC-5B-0 14130261 P213344 Ptk9 Enhancer P213344 Enhancer Unique Tile chr15:94416851-94417774 (-) NM_008971 - 230 94418004 19230 Ptk9 A6|twf1|twinfilin protein tyrosine kinase 9 MGI:1100520 Mm.309867 15 15 F1 PTK9 5756 NM_178789 + 39590 94457364 320709 Tmem117 2 AGAACCGAGGATGTGAGGATGT TCTGTCCATCAAGAACAACAGGA 1 9 3 1.1.1.1.3.9 BCBC-5B-0 14130280 P214184 Stau1 Enhancer P214184 Enhancer Unique Tile chr2:166686103-166686920 (-) NM_011490 - 537 166687457 20853 Stau1 5830401L18Rik|AW549911|C85792|Stau staufen (RNA binding protein) homolog 1 (Drosophila) MGI:1338864 Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276; Mm.412812; Mm.73276 2 2 H3 STAU1 6780 0 CCCTTCGTCAGTCACTTCGTATT CAAGCAAGCAAGCAAACAGAAT 1 9 4 1.1.1.1.4.9 BCBC-5B-0 14130299 P214934 Isg20 Enhancer P214934 Enhancer Unique Tile chr7:78783666-78784628 (+) NM_020583 + 2702 78787330 57444 Isg20 1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45 interferon-stimulated protein MGI:1928895 Mm.322843 7 7 D2 ISG20 3669 NM_026531 + 14096 78769570 68048 Isg20l1 0 TGCGGTTAATTGTTTAAGGCTGT TTCATCTAGTGTGGATGGTGGTG 1 9 5 1.1.1.1.5.9 BCBC-5B-0 14130318 P216056 Glrx5 Enhancer P216056 Enhancer Unique Tile chr12:105428698-105429749 (+) NM_028419 + 3969 105433718 73046 Glrx5 2310004O13Rik|2900070E19Rik|AU020725 glutaredoxin 5 homolog (S. cerevisiae) MGI:1920296 Mm.29128 12 12 E GLRX5 51218 NM_172500 - 17839 105410859 212073 4831426I19Rik 0 TACATGTTTGGCATGGATAGCAC CTTGCTTTGTCTGATCCAGGAGT 1 9 6 1.1.1.1.6.9 BCBC-5B-0 14130337 P216806 Rom1 Enhancer P216806 Enhancer Unique Tile chr19:8992491-8993521 (+) NM_009073 - 2702 8996223 19881 Rom1 Rom-1|Tspan23 rod outer segment membrane protein 1 MGI:97998 Mm.426094 19 19 A|19 8.0 cM ROM1 6094 NM_144872 + 3198 8996719 225898 Eml3 0 AGATGCTAACAGTGACCAGGAGC AGTGAAAGCAAAGTTGGTCAAGC 1 9 7 1.1.1.1.7.9 BCBC-5B-0 14130356 P217646 Pigk Enhancer P217646 Enhancer Unique Tile chr3:152646700-152647627 (+) NM_025662;NM_178016; + 3858 152651485 329777 Pigk 3000001O05Rik phosphatidylinositol glycan anchor biosynthesis, class K MGI:1913863 Mm.331447 3 3 H4 PIGK 10026 0 AACATGTTCTCGGGTTTACAGGA AATGCCTTTCTTCCATCTGTTCA 1 9 8 1.1.1.1.8.9 BCBC-5B-0 14130375 P218686 Ostb ProximalPromoter P218686 ProximalPromoter Unique Tile chr9:65220979-65221925 (-) NM_178933 - 200 65220779 330962 Ostb - organic solute transporter beta MGI:3582052 Mm.335247 9 9 C OSTbeta 123264 NM_027134 + 11862 65233787 69606 Mtfmt 1 GTGTGTGTGTGTGTGTGTGTGTG ACCTCCAGTGACAAACTGACTCC 1 9 9 1.1.1.1.9.9 BCBC-5B-0 14130394 P219436 Actr6 Enhancer P219436 Enhancer Unique Tile chr10:89164353-89165261 (-) NM_025914 - 2259 89162094 67019 Actr6 2010200J04Rik|AU044443|Arp6|ArpX|CDA12 ARP6 actin-related protein 6 homolog (yeast) MGI:1914269 Mm.335292 10 10 C2 ACTR6 64431 NM_029166 + 9563 89174824 75089 E030041M21Rik 0 TATTTGGCTCACAGTTGGAAGGT CAACTTGGGAGACATATCAAGGC 1 9 10 1.1.1.1.10.9 BCBC-5B-0 14130413 P220558 Smcr7 Enhancer P220558 Enhancer Unique Tile chr11:60547147-60548134 (-) NM_001009927 + 2444 60544703 237781 Smcr7 AI482195|Gm11|MGC113770 Smith-Magenis syndrome chromosome region, candidate 7 homolog (human) MGI:2144199 Mm.339760; Mm.395702; Mm.339760; Mm.395702; Mm.339760; Mm.395702; Mm.339760; Mm.395702; Mm.339760; Mm.395702; Mm.339760; Mm.395702 11 11 B2 NM_022009 - 3731 60543416 14248 Fliih 0 CTGTACAGCACGTAGCCAATGTC AGTTCAGCACTATAGCACCCCTG 1 9 11 1.1.1.1.11.9 BCBC-5B-0 14130432 P221398 Gc ProximalPromoter P221398 ProximalPromoter Unique Tile chr5:90532896-90533842 (-) NM_008096 - 64 90532960 14473 Gc DBP group specific component MGI:95669 Mm.196595 5 5 E1|5 44.0 cM GC 2638 NM_009225 + 19270 90513626 20638 Snrpb 0 AGGTACAGGATTCACATGAGGGA GGAGAACCAGAACCCTCTTCATT 1 9 12 1.1.1.1.12.9 BCBC-5B-0 14130451 P222148 Nodal Enhancer P222148 Enhancer End Repeat Tile chr10:60814441-60815340 (+) NM_013611 + 785 60813656 18119 Nodal Tg.413d nodal MGI:97359 Mm.57195 10 10 B4|10 31.5 cM NODAL 4838 NM_010124 - 32686 60848026 13688 Eif4ebp2 0 GTGTGTGTGTGTGTGTGTGTGTG CCCATATTGCCAGAGCTTTACAC 1 9 13 1.1.1.1.13.9 BCBC-5B-0 14130470 P223270 Ddx19a Enhancer P223270 Enhancer Unique Tile chr8:113881528-113882522 (-) NM_007916 - 1948 113884470 13680 Ddx19a DBP5|Ddx19|Eif4a-rs1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a MGI:99526 Mm.287901 8 8 D3 DDX19A 55308 NM_172284 - 31872 113914394 234733 Ddx19b 0 CTAGCCTGAATAAGGTCCTGGGT TAAAAGAGTTTAGGAGGGGCTGG 1 9 14 1.1.1.1.14.9 BCBC-5B-0 14130489 P224020 Ppm1m ProximalPromoter P224020 ProximalPromoter Unique Tile chr9:106057824-106058871 (-) NM_198931;NM_026447; - 448 106057376 67905 Ppm1m 2810423O19Rik|AW610647|C77250|PP2Ceta protein phosphatase 1M MGI:1915155 Mm.23018 9 9 F1 PPM1M 132160 NM_011876 + 2337 106061208 23999 Ptk9l 1 GGCATTTCCCCAAAAAGTTTAAG TACAGTTAAGATGGCTTCTCGCC 1 9 15 1.1.1.1.15.9 BCBC-5B-0 14130508 P224860 Raver1 ProximalPromoter P224860 ProximalPromoter Unique Tile chr9:20840320-20841414 (-) NM_027911 - 2069 20842389 71766 Raver1 1300006N24Rik|KIAA1978|MGC118403|mKIAA1978 ribonucleoprotein, PTB-binding 1 MGI:1919016 Mm.196137 9 9 A3 RAVER1 125950 NM_001039824 - 16404 20823916 68165 B230118G17Rik 2 GCTAAATTGTCTGCTCACTGGCT GCTGCCTATGCTAACACACACAC 1 9 16 1.1.1.1.16.9 BCBC-5B-0 14130527 P227624 5830482F20Rik Pdx1 P227624 Pdx1 Unique Tile chr7:28503973-28505037 (+) NM_177158 + 6237 28497736 320435 5830482F20Rik MGC51433 RIKEN cDNA 5830482F20 gene MGI:2444024 Mm.74632 7 7 B1 FLJ45909 126432 NM_177301 + 14617 28519654 15388 Hnrpl 2 CAGAGGCAGGTGGATTTCTGT CCAGGTAATTCTGGAGGTCAGTG 1 9 17 1.1.1.1.17.9 BCBC-5B-0 14130546 P227030 D930010J01Rik Pdx1 P227030 Pdx1 Unique Tile chr19:7136053-7136979 (+) NM_134147 + 11967 7124086 107227 D930010J01Rik AI604841|AW743046 RIKEN cDNA D930010J01 gene MGI:2147583 Mm.135815 19 19 A LRP16 28992 NM_001033154 + 16101 7153080 70494 5730409K12Rik 0 TAATGGCATGTGTGATGTGACTG GCTCTGACTTCCCCAGGACTAAT 1 9 18 1.1.1.1.18.9 BCBC-5B-0 14130565 P226136 B130050I23Rik Pdx1 P226136 Pdx1 Unique Tile chr8:4165588-4166488 (+) NM_001039578 + 78 4166566 213027 B130050I23Rik 1700084G18Rik|2310039H16Rik|3110007G05Rik|EVI5L|MGC29047 RIKEN cDNA B130050I23 gene MGI:2442167 Mm.193272; Mm.210436; Mm.193272; Mm.210436; Mm.193272; Mm.210436; Mm.193272; Mm.210436; Mm.193272; Mm.210436; Mm.193272; Mm.210436; Mm.193272; Mm.210436; Mm.193272; Mm.210436; Mm.193272; Mm.210436; Mm.193272; Mm.210436; Mm.193272; Mm.210436; Mm.193272; Mm.210436; Mm.193272; Mm.210436 8 8 A1.1 0 AAACAAAGTGGAAGGAGAAAGGG TGACATAAGACCTGACCAATCCA 1 9 19 1.1.1.1.19.9 BCBC-5B-0 14130584 P003279 Blank P003279 Buffer Control Negative Blank 1 9 20 1.1.1.1.20.9 BCBC-5B-0 14130224 P211448 PufferfishHuman P211448 PufferfishHuman Unique Tile chr15:40363390-40364431 (-) 0 TAACCTTGACGTCCATCAGCATA TCCAAGGATTTCTCCAGAGTCAG 1 10 1 1.1.1.1.1.10 BCBC-5B-0 14130243 P212198 miRNA P212198 miRNA Unique Tile chr2:74528662-74529725 (-) mmu-mir-10b 1 TTCAATCCACCAGCAGAGATTTT GCCGCAATTACTCTCTCCATAAA 1 10 2 1.1.1.1.2.10 BCBC-5B-0 14130262 P213038 Fosl2 Enhancer P213038 Enhancer Unique Tile chr5:32411079-32412054 (+) NM_008037 + 1060 32413114 14284 Fosl2 Fra-2 fos-like antigen 2 MGI:102858 Mm.24684 5 5 B1|5 18.1 cM FOSL2 2355 0 CTGAGACTCTAGACTCGCCCAAG GATGGTCATTTGCGTTAGAGGAC 1 10 3 1.1.1.1.3.10 BCBC-5B-0 14130281 P214160 Slc2a1 Enhancer P214160 Enhancer Unique Tile chr4:118606891-118607826 (+) NM_011400 + 184 118606707 20525 Slc2a1 Glut-1|Glut1 solute carrier family 2 (facilitated glucose transporter), member 1 MGI:95755 Mm.21002 4 4 D2.1|4 52.0 cM SLC2A1 6513 1 ATCCCAGCAGCAAGGTGAGTAAC TCTGAGAGAAAAGTTTTACGCGG 1 10 4 1.1.1.1.4.10 BCBC-5B-0 14130300 P214910 Gmeb1 Enhancer P214910 Enhancer Unique Tile chr4:131525429-131526361 (-) NM_020273 - 1501 131523928 56809 Gmeb1 1110050A04Rik|AI256615|AI481278 glucocorticoid modulatory element binding protein 1 MGI:2135604 Mm.103489; Mm.393722; Mm.103489; Mm.393722; Mm.103489; Mm.393722; Mm.103489; Mm.393722; Mm.103489; Mm.393722; Mm.103489; Mm.393722; Mm.103489; Mm.393722; Mm.103489; Mm.393722; Mm.103489; Mm.393722; Mm.103489; Mm.393722 4 4 D3 GMEB1 10691 NM_025579 + 20127 131546488 66464 Taf12 0 GTTCTGAAAAGAAAGTGCAGGGA CAGTTGCTCAGAGTGAATGGAGA 1 10 5 1.1.1.1.5.10 BCBC-5B-0 14130319 P216032 Aldh1b1 Enhancer P216032 Enhancer Unique Tile chr4:45816258-45817315 (+) NM_028270 + 2833 45820148 72535 Aldh1b1 2700007F14Rik|MGC101971 aldehyde dehydrogenase 1 family, member B1 MGI:1919785 Mm.331583 4 4 B2 ALDH1B1 219 NM_018741 - 30582 45847897 75426 Igfbpl1 1 TACGGTCTGGTTTCTTGGAACAT GCTGTGAAAAGAGCCAGATTTGT 1 10 6 1.1.1.1.6.10 BCBC-5B-0 14130338 P216872 Srd5a1 Enhancer P216872 Enhancer Unique Tile chr13:70077715-70078623 (+) NM_175283 - 67 70078690 78925 Srd5a1 0610031P22Rik|4930435F02Rik|Srd5a-1 steroid 5 alpha-reductase 1 MGI:98400 Mm.260009; Mm.422833; Mm.260009; Mm.422833; Mm.260009; Mm.422833; Mm.260009; Mm.422833; Mm.260009; Mm.422833; Mm.260009; Mm.422833; Mm.260009; Mm.422833 13 13 C1|13 39.0 cM SRD5A1 6715 NM_145354 + 992 70079615 28114 Nsun2 0 TAAGAGACTTTCCCATGTCCCAA AGCTATGGAGTTGGATGAGTTGC 1 10 7 1.1.1.1.7.10 BCBC-5B-0 14130357 P217622 Ctso Enhancer P217622 Enhancer Unique Tile chr3:82014648-82015693 (+) NM_177662 + 2849 82018542 229445 Ctso A330105D01Rik|A430056C07|AI118514 cathepsin O MGI:2139628 Mm.254642; Mm.402656; Mm.254642; Mm.402656; Mm.254642; Mm.402656; Mm.254642; Mm.402656; Mm.254642; Mm.402656; Mm.254642; Mm.402656; Mm.254642; Mm.402656; Mm.254642; Mm.402656; Mm.254642; Mm.402656; Mm.254642; Mm.402656; Mm.254642; Mm.402656; Mm.254642; Mm.402656 3 3 E3 CTSO 1519 NM_019911 - 45962 82061655 56720 Tdo2 0 GAATTAAAGGCATGCGACTTTTG TATGGCATGCACAAATTGAACTC 1 10 8 1.1.1.1.8.10 BCBC-5B-0 14130376 P218662 Npc1l1 ProximalPromoter P218662 ProximalPromoter Unique Tile chr11:6130203-6131174 (-) NM_207242 - 77 6130126 237636 Npc1l1 9130221N23Rik|Gm243 NPC1-like 1 MGI:2685089 Mm.212492 11 11 A1 NPC1L1 29881 NM_173748 - 30031 6100172 209586 Nudcd3 0 TTGGGACAAGACAAGAAGAGGAC GAGTTTGCACATTAAGGCAGCTT 1 10 9 1.1.1.1.9.10 BCBC-5B-0 14130395 P219412 Timm8a1 ProximalPromoter P219412 ProximalPromoter Unique Tile chrX:129888002-129888952 (-) NM_013898 - 23 129887979 30058 Timm8a1 DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a translocase of inner mitochondrial membrane 8 homolog a1 (yeast) MGI:1353433 Mm.214504 X X E3|X 51.0 cM TIMM8A 1678 NM_013482 - 40462 129929414 12229 Btk 1 AGGAATGCCTTTCTTCTCTCGTT GTGACGGAACCGGAACTACAAC 1 10 10 1.1.1.1.10.10 BCBC-5B-0 14130414 P220252 Rprc1 ProximalPromoter P220252 ProximalPromoter Unique Tile chr4:125758524-125759525 (-) NM_144941 - 63 125758587 245877 Rprc1 AV028413|BC019977|MGC27585|MGC28498|Parcc1|mKIAA1187 arginine/proline rich coiled-coil 1 MGI:2384297 Mm.266716; Mm.392033; Mm.266716; Mm.392033; Mm.266716; Mm.392033; Mm.266716; Mm.392033; Mm.266716; Mm.392033; Mm.266716; Mm.392033; Mm.266716; Mm.392033; Mm.266716; Mm.392033; Mm.266716; Mm.392033; Mm.266716; Mm.392033; Mm.266716; Mm.392033 4 4 D2.2 RPRC1 55700 NM_013718 + 5183 125764708 27096 Trappc3 0 TCTACTATCGATCCACCTTCCCA GGTGGCTAACGAAGCTCTGAGTA 1 10 11 1.1.1.1.11.10 BCBC-5B-0 14130433 P221374 Olfr74 ProximalPromoter P221374 ProximalPromoter Unique Tile chr2:87775445-87776373 (-) NM_054091 - 57 87775502 117005 Olfr74 MOR174-4|mOR-EV olfactory receptor 74 MGI:2151909 Mm.196679 2 2 D NM_146849 - 11716 87763729 258846 Olfr1157 0 TAGATGCTCTGATTTTTCCCCAA CTGAGAAGACCAAGAGGGTGAAA 1 10 12 1.1.1.1.12.10 BCBC-5B-0 14130452 P222124 Hist2h4; Hist1h4c ProximalPromoter P222124 ProximalPromoter Unique Tile chr13:23705820-23706731 (-) NM_178208;NM_033596; - 94 23705914 97122; 319155 Hist2h4; Hist1h4c H4|X04652; - histone 2, H4; histone 1, H4c MGI:2140113; Mm.227295; Mm.246720; Mm.255646; Mm.227295; Mm.246720; Mm.255646; Mm.227295; Mm.246720; Mm.255646; Mm.227295; Mm.246720; Mm.255646; Mm.227295; Mm.246720; Mm.255646; Mm.227295; Mm.246720; Mm.255646; Mm.227295; Mm.246720; Mm.255646; Mm.227295; Mm.246720; Mm.255646; Mm.261662 3; 13 3 F1-F2; - HIST2H4A; 8370; NM_010377 + 2545 23703275 107970 Hist1h1t 0 TCGGATTAGCCTTGTTTTGACAT TTGGTAATGCCCTGGATGTTATC 1 10 13 1.1.1.1.13.10 BCBC-5B-0 14130471 P223246 Pscd1 Enhancer P223246 Enhancer Unique Tile chr11:118063630-118064544 (-) NM_011180 - 22 118064566 19157 Pscd1 CLM1|CTH-1|CYTIP|KIAA4240|mKIAA4240 pleckstrin homology, Sec7 and coiled-coil domains 1 MGI:1334257 Mm.86413 11 11 E2 PSCD1 9267 0 GACGATGACAGCTATGGTGAGTG AGAGTCTAAATCGCTTCTGCCCT 1 10 14 1.1.1.1.14.10 BCBC-5B-0 14130490 P224086 1500032D16Rik ProximalPromoter P224086 ProximalPromoter Unique Tile chr17:31247855-31248764 (+) NM_030087 + 103 31248867 78330 1500032D16Rik - RIKEN cDNA 1500032D16 gene MGI:1925580 Mm.28349 17 17 A3.3 NM_021322 - 6870 31240985 57773 Wdr4 0 TGACATTGAATTTTCCTTGGTGG CCCTAACTGAGTCCACCAATTCC 1 10 15 1.1.1.1.15.10 BCBC-5B-0 14130509 P224836 A230052G05Rik ProximalPromoter P224836 ProximalPromoter Unique Tile chr8:73791040-73792011 (+) NM_001002766 + 104 73792115 442796 A230052G05Rik - RIKEN cDNA A230052G05 gene MGI:3045239 Mm.390050 8 8 B3.3 NM_032397 - 236 73792247 84036 Kcnn1 0 AGCTGTGAGTCCAGAATTTGAGG CCGTCTGCTTACTCACTTGGTTT 1 10 16 1.1.1.1.16.10 BCBC-5B-0 14130528 P227600 Pdx1 P227600 Pdx1 Unique Tile chr1:114598965-114599923 (+) 0 GTGAGGTTTGAGCATAGAGCACA CATAATGGGCTTACATTTCCCCT 1 10 17 1.1.1.1.17.10 BCBC-5B-0 14130547 P227006 Tardbp Pdx1 P227006 Pdx1 Unique Tile chr4:147507801-147508726 (+) NM_145556;NM_001003898;NM_001003899;NM_001008546;NM_001008545; - 37005 147470796 230908 Tardbp 1190002A23Rik|C85084 TAR DNA binding protein MGI:2387629 Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962; Mm.22453; Mm.378962 4 4 E2 TARDBP 23435 0 TGCTTATTGGAGTCTGTAGGGGA AGAGAGAGAGAGAGGTTTGAGCG 1 10 18 1.1.1.1.18.10 BCBC-5B-0 14130566 P227270 Pdx1 P227270 Pdx1 Unique Tile chr1:152696657-152697594 (+) 0 GGCTGTTAGAGAGCTGTGTCTCC TTGCAGCATCTTTTCTGATGTTC 1 10 19 1.1.1.1.19.10 BCBC-5B-0 14130585 P003279 Blank P003279 Buffer Control Negative Blank 1 10 20 1.1.1.1.20.10 BCBC-5B-0 14130225 P211424 PufferfishHuman P211424 PufferfishHuman Unique Tile chr18:83244598-83245515 (-) 0 ACAAAGCAATTCAGTGCAACGTA TCTTCTTTTCTTTCTGTGCAGGG 1 11 1 1.1.1.1.1.11 BCBC-5B-0 14130244 P212264 miRNA P212264 miRNA Unique Tile chr2:84541733-84542694 (-) mmu-mir-130a 1 TCCTCAATGAAATTAAGGGGGAT CCCTCAGTTCAAATCTCTCTGGA 1 11 2 1.1.1.1.2.11 BCBC-5B-0 14130263 P213014 Ezh2 Enhancer P213014 Enhancer Unique Tile chr6:47523315-47524255 (-) NM_007971 - 258 47524513 14056 Ezh2 Enx-1|Enx1h|KIAA4065|MGC90723|mKIAA4065 enhancer of zeste homolog 2 (Drosophila) MGI:107940 Mm.246688 6 6 B|6 19.2 cM EZH2 2146 1 CCCACGAGTGAACTGTGGATT ACAAATGCCTTTTCTGACTCACC 1 11 3 1.1.1.1.3.11 BCBC-5B-0 14130282 P214136 Ncor1 Enhancer P214136 Enhancer Unique Tile chr11:62258180-62259125 (-) NM_011308 - 3504 62254676 20185 Ncor1 5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047 nuclear receptor co-repressor 1 MGI:1349717 Mm.271814 11 11 B2 NCOR1 9611 NM_001039536 + 15529 62274654 327942 Pigl 0 TATCCAGAGATTGTGTTGGGCTT AAGCAATATATCCAGCCCCTCTC 1 11 4 1.1.1.1.4.11 BCBC-5B-0 14130301 P214886 Selk Enhancer P214886 Enhancer Unique Tile chr14:28797521-28798483 (+) NM_019979 + 54 28797467 80795 Selk 1110001C03Rik|30kDa|AA673253|HSPC030|Hsp030|Hsp30 selenoprotein K MGI:1931466 Mm.104491 14 14 A3 SELK 58515 NM_027493 + 8918 28807401 56249 Actr8 0 GGGAAGATGGTTTACATCTCGAA TACAACCACACCTATTTCCAGGG 1 11 5 1.1.1.1.5.11 BCBC-5B-0 14130320 P215726 2610101N10Rik Enhancer P215726 Enhancer Unique Tile chr9:95320222-95321160 (-) NM_026476 - 188 95321348 67958 2610101N10Rik - RIKEN cDNA 2610101N10 gene MGI:1915208 Mm.292742 9 9 E4 SR140 23350 NM_198414 + 48008 95369168 75552 Paqr9 0 TTAGAGATCTCCGTCAGTCAGGG TCCTTATCTCTGCATCTCAAGCC 1 11 6 1.1.1.1.6.11 BCBC-5B-0 14130339 P216848 Ppil2 Enhancer P216848 Enhancer Unique Tile chr16:17026699-17027653 (-) NM_144954 - 1923 17024776 66053 Ppil2 0610009L05Rik|1700016N17Rik|4921520K19Rik|4930511F14Rik|AA589416|C130078A06Rik peptidylprolyl isomerase (cyclophilin)-like 2 MGI:2447857 Mm.237941; Mm.253614; Mm.237941; Mm.253614; Mm.237941; Mm.253614; Mm.237941; Mm.253614; Mm.237941; Mm.253614; Mm.237941; Mm.253614; Mm.237941; Mm.253614; Mm.237941; Mm.253614; Mm.237941; Mm.253614; Mm.237941; Mm.253614; Mm.237941; Mm.253614; Mm.237941; Mm.253614 16 16 A3 PPIL2 23759 NM_183287 - 11016 17038669 70458 2610318N02Rik 0 CTGGGAGTCGGTGTCTTTCTCTA TAGTGCACTTGCAACTCAAGGAA 1 11 7 1.1.1.1.7.11 BCBC-5B-0 14130358 P217598 6720458F09Rik Enhancer P217598 Enhancer Unique Tile chr12:112122999-112123900 (+) NM_177374 + 2050 112125950 328162 6720458F09Rik AI606093 RIKEN cDNA 6720458F09 gene MGI:2443487 Mm.425747 12 12 F1 C14orf172 115708 NM_021273 - 2923 112120076 12709 Ckb 0 ATATATCTGCAGCTGCCTACCCA AGAGATACACCTTGGCCACAGAC 1 11 8 1.1.1.1.8.11 BCBC-5B-0 14130377 P218638 1700018B08Rik Enhancer P218638 Enhancer Unique Tile chr8:124425991-124427023 (-) NM_029597 - 908 124427931 76405 1700018B08Rik 1700084O22Rik RIKEN cDNA 1700018B08 gene MGI:1923655 Mm.165697 8 8 E1 NM_133765 - 37820 124464843 76454 Fbxo31 0 TTCTGTCCCTCTTTGTTCCACTC AAGACACACAGAGCACAGCACTC 1 11 9 1.1.1.1.9.11 BCBC-5B-0 14130396 P219478 Ccl5 ProximalPromoter P219478 ProximalPromoter Unique Tile chr11:83346638-83347667 (-) NM_013653 - 46 83346684 20304 Ccl5 MuRantes|RANTES|SISd|Scya5|TCP228 chemokine (C-C motif) ligand 5 MGI:98262 Mm.284248 11 11 C|11 47.4 cM CCL5 6352 NM_011338 - 47164 83394831 20308 Ccl9 0 TTGAATGTTAGGCATCCTCCTGT CAGCTGCAGAGATCTTCATGGTA 1 11 10 1.1.1.1.10.11 BCBC-5B-0 14130415 P220228 Fga ProximalPromoter P220228 ProximalPromoter Unique Tile chr3:83111162-83112078 (+) NM_010196 + 2 83112080 14161 Fga Fib fibrinogen, alpha polypeptide MGI:1316726 Mm.88793 3 3 F1|3 44.8 cM FGA 2243 NM_133862 + 17340 83093822 99571 Fgg 0 CCACCCCTTTTCTTTATCCATTC CACTCACAGCTCCAACCCTACTT 1 11 11 1.1.1.1.11.11 BCBC-5B-0 14130434 P221350 Luc7l2 ProximalPromoter P221350 ProximalPromoter Unique Tile chr6:38480049-38480982 (+) NM_138680 + 90 38481072 192196 Luc7l2 4930471C18Rik|AA522013|AU015269|CGI-59|CGI-74|Cgi74 LUC7-like 2 (S. cerevisiae) MGI:2183260 Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380; Mm.276133; Mm.389521; Mm.426380 6 6 B1 LUC7L2 51631 NM_025363 + 15581 38464468 66117 1110001J03Rik 1 GATAACGTAATTTGCATCGGCTC CTACGAAGGGTCCCACCCTAAC 1 11 12 1.1.1.1.12.11 BCBC-5B-0 14130453 P222100 Mrgprd ProximalPromoter P222100 ProximalPromoter Unique Tile chr7:145123152-145124089 (+) NM_203490 + 135 145124224 211578 Mrgprd Gm499|MrgD|TGR7 MAS-related GPR, member D MGI:3033142 Mm.370299 7 7 F5 MRGPRD 116512 NM_145379 + 12854 145110298 211577 Mrgprf 0 GCACATGCCTGCATACAGATAAA CTCAGCTTGCTAAAAGCGAAGAG 1 11 13 1.1.1.1.13.11 BCBC-5B-0 14130472 P222940 Olfr843 ProximalPromoter P222940 ProximalPromoter Unique Tile chr9:18999902-19000852 (-) NM_146567 - 103 18999799 258560 Olfr843 MOR155-2 olfactory receptor 843 MGI:3030677 Mm.377569 9 - 0 TGCTGTGACATATGCCAGCTAAT CACAAATTCTTTGGGGTCACATT 1 11 14 1.1.1.1.14.11 BCBC-5B-0 14130491 P224062 Gabrg3 Enhancer P224062 Enhancer Unique Tile chr7:57252270-57253332 (-) NM_008074 - 1483 57254815 14407 Gabrg3 Gabrg-3 gamma-aminobutyric acid (GABA-A) receptor, subunit gamma 3 MGI:95624 Mm.322668 7 7 B5|7 28.2 cM GABRG3 2567 NM_177273 - 1558 57254890 320835 B230362M20Rik 0 AAGATGGAGCACTCTGGTTTCTG CCTATATTCCTGCACAGTCCCAG 1 11 15 1.1.1.1.15.11 BCBC-5B-0 14130510 P224812 Smg7 ProximalPromoter P224812 ProximalPromoter Unique Tile chr1:154664849-154665919 (-) NM_001005507 - 9 154664840 226517 Smg7 9430023P16Rik|MGC91209|mKIAA0250 Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) MGI:2682334 Mm.270775 1 1 G3 SMG7 9887 2 GCCTTCATAACCTGCCTTTTCTT ATCTTCCTCTCCTCCGACTCCT 1 11 16 1.1.1.1.16.11 BCBC-5B-0 14130529 P227576 Rapgef3 Pdx1 P227576 Pdx1 Unique Tile chr15:97594947-97595903 (+) NM_144850 - 203 97595700 223864 Rapgef3 2310016P22Rik|9330170P05Rik|Epac|Epac1|MGC19192 Rap guanine nucleotide exchange factor (GEF) 3 MGI:2441741 Mm.24028 15 15 F1 RAPGEF3 10411 NM_026353 + 16495 97612398 67739 4930570C03Rik 0 ACAGCTGGACTCTCCACCACA GCTTGAACCCACTGACGTAGTCT 1 11 17 1.1.1.1.17.11 BCBC-5B-0 14130548 P227072 Gabrb3 Pdx1 P227072 Pdx1 Unique Tile chr7:57460658-57461585 (+) NM_008071;NM_001038701; + 1622 57459036 14402 Gabrb3 A230092K12Rik|AW049585|Cp1|Gabrb-3 gamma-aminobutyric acid (GABA-A) receptor, subunit beta 3 MGI:95621 Mm.8004 7 7 B5|7 28.6 cM GABRB3 2562 0 CCAAGGAGTTCTGACAGACATGA GAGAACACCTTCACTCATGGACC 1 11 18 1.1.1.1.18.11 BCBC-5B-0 14130567 P227246 Trim45 Pdx1 P227246 Pdx1 Unique Tile chr3:101029752-101030687 (+) NM_194343 + 20988 101051675 229644 Trim45 4921530N01Rik tripartite motif-containing 45 MGI:1918187 Mm.189351 3 3 F2.2 TRIM45 80263 0 GACAAAAGTGCTTCTCGGTGAAT ATCCTCAGTGAAATGATGGTGGT 1 11 19 1.1.1.1.19.11 BCBC-5B-0 14130586 P003219 Blank P003219 Buffer Control Negative Blank 1 11 20 1.1.1.1.20.11 BCBC-5B-0 14130226 P211118 PufferfishHuman P211118 PufferfishHuman Unique Tile chr7:114798167-114799146 (+) 0 CATGCTTGTCATCAAGTTTCCAG CAGTTGACCCAGCTACCATATCC 1 12 1 1.1.1.1.1.12 BCBC-5B-0 14130245 P212240 miRNA P212240 miRNA Unique Tile chr9:41329713-41330809 (+) mmu-mir-125b-1 1 GTGAGGGGACACTGTACAAAAGG GATTCCTCTCATGCCTGCTTAAA 1 12 2 1.1.1.1.2.12 BCBC-5B-0 14130264 P212990 Ednrb Enhancer P212990 Enhancer Unique Tile chr14:102726247-102727287 (-) NM_007904 - 2088 102729375 13618 Ednrb AU022549|ET-B|ET>B<|ETb|Sox10m1|s endothelin receptor type B MGI:102720 Mm.229532 14 14 E2.3|14 51.0 cM EDNRB 1910 0 CCCACTGCCATCAATAGAAAGTC TTGCAGGAGATCATGTTGACACT 1 12 3 1.1.1.1.3.12 BCBC-5B-0 14130283 P214112 Dpf2 Enhancer P214112 Enhancer Unique Tile chr19:5911866-5912766 (-) NM_011262 - 24 5912790 19708 Dpf2 Req|ubi-d4 D4, zinc and double PHD fingers family 2 MGI:109529 Mm.2651 19 19 A|19 2.0 cM DPF2 5977 NM_026772 - 6227 5918993 104252 Cdc42ep2 0 GCTGTGGTGGAGAATGTAGTGAA AGCTTTGATTGGACAGCTGAAAC 1 12 4 1.1.1.1.4.12 BCBC-5B-0 14130302 P214952 Kras Enhancer P214952 Enhancer Unique Tile chr6:145206021-145206757 (-) NM_021284 - 611 145207368 16653 Kras AI929937|K-ras|Ki-ras|Kras-2|Kras2|MGC7141|p21B|ras v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog MGI:96680 Mm.383182 6 6 G2|6 71.2 cM KRAS 3845 NM_133688 + 37659 145168362 67636 4930469P12Rik 1 CACAAAGGAGGAGGTGGAGGTAG ACCTTAAGCCTGAAAGGTTCCC 1 12 5 1.1.1.1.5.12 BCBC-5B-0 14130321 P215702 D2Ertd750e Enhancer P215702 Enhancer Unique Tile chr2:118501846-118502884 (+) NM_026412 + 2559 118505443 51944 D2Ertd750e 1700025D04Rik|C15orf23 DNA segment, Chr 2, ERATO Doi 750, expressed MGI:1289298 Mm.252695 2 2 E5 C15orf23 90417 NM_170593 + 30482 118471364 214240 Disp2 0 CAAACCAGGAGAGACCAATTACG GATGACAAGTATTTGGGGAGCAC 1 12 6 1.1.1.1.6.12 BCBC-5B-0 14130340 P216824 Slc35a3 Enhancer P216824 Enhancer Unique Tile chr3:116705634-116706548 (-) NM_144902 - 1350 116704284 229782 Slc35a3 2310050P13Rik|MGC36317 solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 MGI:1917648 Mm.190758 3 3 G1 SLC35A3 23443 0 GCTAGATAGCAAGATTCAGGGCA TCTCGATCTCTTAGCAACCATCC 1 12 7 1.1.1.1.7.12 BCBC-5B-0 14130359 P217574 Casc4 Enhancer P217574 Enhancer Unique Tile chr2:121558955-121559951 (+) NM_177054;NM_199038; + 385 121558570 319996 Casc4 D130060C09Rik|VGFG2573 cancer susceptibility candidate 4 MGI:2443129 Mm.292109 2 2 E5 CASC4 113201 2 AGATGCGAGGATGACAAGGTAAG GTATGCACATGCACACACACACT 1 12 8 1.1.1.1.8.12 BCBC-5B-0 14130378 P218332 Clec4a2 Enhancer P218332 Enhancer Unique Tile chr6:123090272-123091332 (+) NM_011999 + 1180 123089092 26888 Clec4a2 Clecsf6|DCIR|Dcir1 C-type lectin domain family 4, member a2 MGI:1349412 Mm.47384 6 6 F3|6 54.0 cM CLEC4A 50856 NM_001004159 + 47308 123138640 381809 Clec4b2 0 CCAAAACCACACACAAAGAAACA GTGTTCTTCCTGGACTTGGTCTG 1 12 9 1.1.1.1.9.12 BCBC-5B-0 14130397 P219454 Dhx16 ProximalPromoter P219454 ProximalPromoter End Repeat Tile chr17:35486897-35487873 (+) NM_026987 + 2 35487871 69192 Dhx16 2410006N22Rik|DBP2|Ddx16|mKIAA0577 DEAH (Asp-Glu-Ala-His) box polypeptide 16 MGI:1916442 Mm.390986 17 17 B3 DHX16 8449 NM_134122 + 17499 35469398 106582 Nrm 1 ACACACACACACACACACACACA CCGTAGAGACTCCAATTCCACAG 1 12 10 1.1.1.1.10.12 BCBC-5B-0 14130416 P220204 C330019G07Rik ProximalPromoter P220204 ProximalPromoter Duplication Tile chr5:33144472-33145457 (-) NM_194340 - 60 33144532 215476 C330019G07Rik - RIKEN cDNA C330019G07 gene MGI:2443658 Mm.430713 5 5 B1 NM_177786;NM_001025426; + 35120 33180577 277854 Depdc5 0 ACCAGAGAAGGTCATGGTGGTAA GAATAAAGTGCCAAGGGCCTACT 1 12 11 1.1.1.1.11.12 BCBC-5B-0 14130435 P221326 Evpl ProximalPromoter P221326 ProximalPromoter Unique Tile chr11:116054079-116055004 (-) NM_025276 - 8 116054087 14027 Evpl - envoplakin MGI:107507 Mm.293683 11 11 E1 EVPL 2125 NM_027165 + 21450 116032629 69681 Cdk3 0 AGTGGCTTTTCTACCTGGAAACC CTTGAACATGGTGGTGAAGCAG 1 12 12 1.1.1.1.12.12 BCBC-5B-0 14130454 P222166 Sf3b5 ProximalPromoter P222166 ProximalPromoter Unique Tile chr10:12697603-12698569 (+) NM_175102 + 82 12698651 66125 Sf3b5 10kDa|1110005L13Rik|AU043053|Sf3b10 splicing factor 3b, subunit 5 MGI:1913375 Mm.29743; Mm.402225; Mm.29743; Mm.402225; Mm.29743; Mm.402225; Mm.29743; Mm.402225; Mm.29743; Mm.402225; Mm.29743; Mm.402225 10 10 A1 SF3B5 83443 0 CCACCTGGCATGATGCTTATTAT GCCTACTTCGAAGAGTGTTGCAT 1 12 13 1.1.1.1.13.12 BCBC-5B-0 14130473 P222916 Nt5dc3 ProximalPromoter P222916 ProximalPromoter Unique Tile chr19:10371939-10372976 (-) NM_198114 - 33306 10338633 269060 Nt5dc3 KIAA0659|Nsddr 5'-nucleotidase domain containing 3 MGI:2677061 Mm.329718 19 19 A C11orf11 747 1 GAACTCTGCAACGAGGAGAAGTC CCTATTCACTAACGTTGCTTCCG 1 12 14 1.1.1.1.14.12 BCBC-5B-0 14130492 P224038 5330416C01Rik ProximalPromoter P224038 ProximalPromoter Unique Tile chr13:98847516-98848591 (-) NM_207528 - 20 98847536 403201 5330416C01Rik Gm532 RIKEN cDNA 5330416C01 gene MGI:2685378 Mm.110162 13 13 D1 0 CTTCGCTGTGTTTTGCAGTTAGA CAAAAGAAGGTAGGACACCATGC 1 12 15 1.1.1.1.15.12 BCBC-5B-0 14130511 P224788 Pdia5 ProximalPromoter P224788 ProximalPromoter Unique Tile chr16:35410795-35411703 (-) NM_028295 - 175 35410620 72599 Pdia5 2700053F16Rik|AU015525|Pdir protein disulfide isomerase associated 5 MGI:1919849 Mm.71015 16 16 B3 PDIA5 10954 NM_013661 + 49405 35461108 20357 Sema5b 2 TAATGTACCCATTGTCCAGCTCC GTTCACTAAGGAGCCTTGCTCTG 1 12 16 1.1.1.1.16.12 BCBC-5B-0 14130530 P225628 Cpb1 ProximalPromoter P225628 ProximalPromoter Unique Tile chr3:20466763-20467711 (-) NM_029706 - 39 20466802 76703 Cpb1 0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870 carboxypeptidase B1 (tissue) MGI:1923953 Mm.34692 3 3 A2|3 13.0 cM CPB1 1360 NM_007753 - 32536 20434227 12873 Cpa3 0 TGTAAGCTCAGTGCAAATTCCAG GCTTTTATAGCCCGGAGTGTTCT 1 12 17 1.1.1.1.17.12 BCBC-5B-0 14130549 P227048 Pdx1 P227048 Pdx1 Unique Tile chr1:92233575-92234502 (+) 0 TGCAACCTGTGAGCTAAAACAAA GACAAATGCCAACACCTGGTAAT 1 12 18 1.1.1.1.18.12 BCBC-5B-0 14130568 P227222 Pdx1 P227222 Pdx1 Unique Tile chr3:123103485-123104419 (+) 0 TCAACAGTTCTTGCTTTGTCTGC GTAGCTGAAGTTGGGTGTCCACT 1 12 19 1.1.1.1.19.12 BCBC-5B-0 14130587 P003123 Blank P003123 Buffer Control Negative Blank 1 12 20 1.1.1.1.20.12 BCBC-5B-0 14130227 P211094 PufferfishHuman P211094 PufferfishHuman Unique Tile chr2:34378386-34379336 (+) 1 AGCCTGAGACAAATGAGTTGGAG CTTTAGCCTCGTCTGAGCCAATA 1 13 1 1.1.1.1.1.13 BCBC-5B-0 14130246 P212216 miRNA P212216 miRNA Unique Tile chr2:180315242-180316264 (+) mmu-mir-1-1 1 AGCTGGGCTCTGTCTCCTTAACT TGAACACTAGTTCAGCCCTAGCC 1 13 2 1.1.1.1.2.13 BCBC-5B-0 14130265 P212966 Nadsyn1 Enhancer P212966 Enhancer Unique Tile chr7:143628493-143629446 (+) NM_030221 - 2721 143632167 78914 Nadsyn1 9130012B15Rik NAD synthetase 1 MGI:1926164 Mm.35104 7 7 F5 NADSYN1 55191 NM_007856 + 3110 143632556 13360 Dhcr7 0 CACAGATGATGTCCTGAGTGACC CACCACCTTGTATGCCTCTTACC 1 13 3 1.1.1.1.3.13 BCBC-5B-0 14130284 P213806 Fkbp4 Enhancer P213806 Enhancer Unique Tile chr6:128403132-128404074 (-) NM_010219 - 176 128404250 14228 Fkbp4 59kDa|AL022792|AW208983|FKBP-52|FKPB52|p59 FK506 binding protein 4 MGI:95543 Mm.12758 6 6 F3 FKBP4 2288 NM_133927 - 12603 128390529 101142 Itfg2 0 CTCTCGAAGGAGTGGACATCAG AGGTAAAAAGCCAGGAGCATTTC 1 13 4 1.1.1.1.4.13 BCBC-5B-0 14130303 P214928 Gmnn Enhancer P214928 Enhancer Unique Tile chr13:24766873-24767870 (-) NM_020567 - 1450 24769320 57441 Gmnn AW546347|Gem geminin MGI:1927344 Mm.12239 13 13 A3.1 GMNN 51053 NM_024473 + 41251 24809121 79555 BC005537 0 GTGCCCTTTTCTCAGGTCTTTTT GCCTTCTAAAATGCCCAAGCTAT 1 13 5 1.1.1.1.5.13 BCBC-5B-0 14130322 P215678 Nudt13 Enhancer P215678 Enhancer Unique Tile chr14:19079922-19080926 (+) NM_026341 + 2347 19083273 67725 Nudt13 4933433B15Rik nudix (nucleoside diphosphate linked moiety X)-type motif 13 MGI:1914975 Mm.317636 14 14 B NUDT13 25961 0 CAGGGATTAAACTTCTGCTGGTG TAAAGCTGTCCTCTGACCTCCAC 1 13 6 1.1.1.1.6.13 BCBC-5B-0 14130341 P216800 Dus3l Enhancer P216800 Enhancer Unique Tile chr17:56446730-56447786 (+) NM_144858 + 2115 56449901 224907 Dus3l AI662135|AW557805|MGC56820 dihydrouridine synthase 3-like (S. cerevisiae) MGI:2147092 Mm.293973 17 17 D DUS3L 56931 NM_008738 - 4076 56442654 18188 Nrtn 1 GGCTAGTTGCTATGCAGTCAAGG CCTCCACCTCTCAAAGTGTGTCT 1 13 7 1.1.1.1.7.13 BCBC-5B-0 14130360 P217640 Klhl23 Enhancer P217640 Enhancer Unique Tile chr2:69623480-69624516 (+) NM_177784 + 169 69623311 277396 Klhl23 C130068N17Rik kelch-like 23 (Drosophila) MGI:2683536 Mm.138073 2 2 C2 KLHL23 151230 NM_028521 + 30232 69593248 73373 Phospho2 0 AGGTAAGGGTACACACTCCCCTC CTAAAATCAGATGCCCAAACACC 1 13 8 1.1.1.1.8.13 BCBC-5B-0 14130379 P218308 Krtap16-1 ProximalPromoter P218308 ProximalPromoter Unique Tile chr16:88762798-88763823 (-) NM_130870 - 327 88763125 170651 Krtap16-1 - keratin associated protein 16-1 MGI:2157572 Mm.196827 16 16 C3.3 NM_130857 - 3026 88766849 77918 Krtap16-5 0 AGAGCCAGAGACAGTCCTGCTAA TATCCATAGCCTCCATAGCCAGA 1 13 9 1.1.1.1.9.13 BCBC-5B-0 14130398 P219430 Cd8b1 Enhancer P219430 Enhancer Unique Tile chr6:71252760-71253809 (+) NM_009858 + 440 71252320 12526 Cd8b1 Cd8b|Ly-3|Ly-C|Lyt-3 CD8 antigen, beta chain 1 MGI:88347 Mm.153963; Mm.333148; Mm.153963; Mm.333148; Mm.153963; Mm.333148; Mm.153963; Mm.333148; Mm.153963; Mm.333148; Mm.153963; Mm.333148; Mm.153963; Mm.333148; Mm.153963; Mm.333148; Mm.153963; Mm.333148; Mm.153963; Mm.333148; Mm.153963; Mm.333148; Mm.153963; Mm.333148; Mm.153963; Mm.333148; Mm.153963; Mm.333148; Mm.153963; Mm.333148 6 6 C1|6 30.5 cM CD8B 926 NM_001033462 + 29419 71223341 381785 Gm1070 0 CCGGGAAAGTGCTTCTAGAAAAT AGATATAATGCCAAGGACAGGCA 1 13 10 1.1.1.1.10.13 BCBC-5B-0 14130417 P220180 Adssl1 Enhancer P220180 Enhancer Unique Tile chr12:113065648-113066645 (+) NM_007421 + 1251 113067896 11565 Adssl1 AI528595|Adss|Adss1 adenylosuccinate synthetase like 1 MGI:87947 Mm.3440 12 12 F1 ADSSL1 122622 NM_198411 + 13081 113052567 70435 2610204M08Rik 0 CACTCTGGAGTTCCCAGGTATTG TAAGGTCTTTCAGGAAGGTGTGC 1 13 11 1.1.1.1.11.13 BCBC-5B-0 14130436 P221020 Pla2g12b Enhancer P221020 Enhancer Unique Tile chr10:58799474-58800414 (+) NM_023530 + 433 58799041 69836 Pla2g12b 2010002E04Rik|Fksg71|Pla2g13 phospholipase A2, group XIIB MGI:1917086 Mm.30268 10 10 B3 PLA2G12B 84647 NM_010959 - 36722 58837136 18302 Oit3 0 AGCAGGCAACTAAATCCTGTGAG CAGTCTCAAGACACTCCTCCCAT 1 13 12 1.1.1.1.12.13 BCBC-5B-0 14130455 P222142 Mcpt1 ProximalPromoter P222142 ProximalPromoter Unique Tile chr14:54970963-54971866 (+) NM_008570 + 168 54972034 17224 Mcpt1 AV080368|Mcp-1 mast cell protease 1 MGI:96937 Mm.201549 14 14 C3|14 20.0 cM NM_010782 - 12700 54984566 17232 Mcpt9 0 GTCCAAAACAATCACCTTCTTCG AATGACGTGGTAAGTGCATCCTT 1 13 13 1.1.1.1.13.13 BCBC-5B-0 14130474 P222892 Crhr2 Enhancer P222892 Enhancer Unique Tile chr6:55057970-55059019 (-) NM_009953 - 3531 55062550 12922 Crhr2 CRF-R2|CRFR2alpha|CRFR2beta|Crfr2 corticotropin releasing hormone receptor 2 MGI:894312 Mm.236081 6 6 B3|6 28.0 cM CRHR2 1395 NM_009349 - 45549 55104568 21743 Inmt 0 CCTCCACACAGAGTCAAGGAACT CTCATTTCCTGTCTTTAGCCCCT 1 13 14 1.1.1.1.14.13 BCBC-5B-0 14130493 P224014 Slc27a4 ProximalPromoter P224014 ProximalPromoter Unique Tile chr2:29623662-29624569 (+) NM_011989 + 119 29624688 26569 Slc27a4 BB144259|FATP4 solute carrier family 27 (fatty acid transporter), member 4 MGI:1347347 Mm.330113 2 2 19.0 cM SLC27A4 10999 NM_145520 - 13151 29610511 227682 Trub2 0 GGTTGAGTCATTGAAGGGGCTAT AGTCTAGCTTGTTCAGGCTGCTG 1 13 15 1.1.1.1.15.13 BCBC-5B-0 14130512 P224854 Plxnd1 ProximalPromoter P224854 ProximalPromoter Unique Tile chr6:115960754-115961577 (-) NM_026376 - 171 115960583 67784 Plxnd1 6230425C21Rik plexin D1 MGI:2154244 Mm.3085 6 6 E3 PLXND1 23129 0 GAGGATCACCTGGGTTTCTATGA AAGTTGCCTGCCTCTTTCCTG 1 13 16 1.1.1.1.16.13 BCBC-5B-0 14130531 P225604 Izumo1 ProximalPromoter P225604 ProximalPromoter Unique Tile chr7:45488937-45489851 (+) NM_001018013 + 1 45489852 73456 Izumo1 1700058F15Rik|Izumo izumo sperm-egg fusion 1 MGI:1920706 Mm.380445 7 7 B3 IZUMO1 284359 NM_008051 + 3266 45485671 14343 Fut1 0 CCTTTTCAAGAATGGAGGAAGGT TTATTTCCTGACTCTTAGGCCCC 1 13 17 1.1.1.1.17.13 BCBC-5B-0 14130550 P227024 Pdx1 P227024 Pdx1 Unique Tile chr14:47930428-47931354 (+) 0 GAACTAAGAGAAAATGGCAGGCA TCTTTTGGCTGTCTAACACATCA 1 13 18 1.1.1.1.18.13 BCBC-5B-0 14130569 P227198 Pdx1 P227198 Pdx1 Unique Tile chr13:11568466-11569399 (+) 2 CTGAAGGTATGGGCTTTTGTCAC GGGAGTAGCATTTGGGATGTAAA 1 13 19 1.1.1.1.19.13 BCBC-5B-0 14130588 P002422 Stratagene PCR 8 P002422 Spike Control Negative Stratagene PCR 8 1 13 20 1.1.1.1.20.13 BCBC-5B-0 14130228 P211070 PufferfishHuman P211070 PufferfishHuman Unique Tile chr19:55964879-55965928 (-) 0 TAGAGGGCCTCACAAGAAGTCAC TAGGATCCCCATTCTAGCCTTTC 1 14 1 1.1.1.1.1.14 BCBC-5B-0 14130247 P212192 miRNA P212192 miRNA Unique Tile chr11:35629555-35630504 (-) mmu-mir-103-1 1 AAGTAAGCAGTAGCATGGCAACC TGGTGGCGCTACACTTTCTTTAT 1 14 2 1.1.1.1.2.14 BCBC-5B-0 14130266 P213032 Fli1 Enhancer P213032 Enhancer Unique Tile chr9:32292255-32293072 (-) NM_008026 - 1322 32290933 14247 Fli1 EWSR2|Fli-1|SIC-1|Sic1 Friend leukemia integration 1 MGI:95554 Mm.258908 9 9 A4|9 16.0 cM FLI1 2313 0 AATGTGGATTGGCTATTTTGTGG TTACCTTTTTCCACGCTCTTCAG 1 14 3 1.1.1.1.3.14 BCBC-5B-0 14130285 P213782 Epor Enhancer P213782 Enhancer Unique Tile chr9:21710323-21711417 (-) NM_010149 - 2461 21713878 13857 Epor - erythropoietin receptor MGI:95408 Mm.2653 9 9 A3|9 5.0 cM EPOR 2057 NM_144935 + 21648 21688675 235044 BC018242 0 GGGGTCTTCTATCTGATTGGCTT CACCACAGTGACTTTCAGCATTC 1 14 4 1.1.1.1.4.14 BCBC-5B-0 14130304 P214904 Tmem9b Enhancer P214904 Enhancer Unique Tile chr7:109545651-109546607 (-) NM_020050 - 2211 109543440 56786 Tmem9b 2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3 TMEM9 domain family, member B MGI:1915254 Mm.240668 7 7 E3 TMEM9B 56674 NM_020051 - 22742 109522909 56787 Ascl3 0 CCCAGGCGTCTTAAGCTTATTTT ATTGGATCATGTCTCCATGTGTG 1 14 5 1.1.1.1.5.14 BCBC-5B-0 14130323 P215654 H2afy3 Enhancer P215654 Enhancer Unique Tile chr15:62052139-62053044 (-) NM_026230 - 3070 62049069 67552 H2afy3 4933432H23Rik H2A histone family, member Y3 MGI:1914802 Mm.4608 15 15 D1 0 TCTCTGACTCCTCAGCCTCTGAT ATACAGTGAGATTACCAGGGCCA 1 14 6 1.1.1.1.6.14 BCBC-5B-0 14130342 P216494 Pdk2 Enhancer P216494 Enhancer Unique Tile chr11:94860785-94861820 (-) NM_133667 - 3370 94857415 18604 Pdk2 - pyruvate dehydrogenase kinase, isoenzyme 2 MGI:1343087 Mm.29768 11 11 D|11 55.5 cM PDK2 5164 NM_013565 - 23468 94885288 16400 Itga3 0 ATTATGCCCAAGTACCATGCAGT AATCTCATCTCTGTGGTCAAGGG 1 14 7 1.1.1.1.7.14 BCBC-5B-0 14130361 P217616 Rin3 Enhancer P217616 Enhancer Unique Tile chr12:102687571-102688493 (+) NM_177620 + 3448 102684123 217835 Rin3 6430500K07|C86933 Ras and Rab interactor 3 MGI:2385708 Mm.24145 12 12 E RIN3 79890 0 CCCTGTACTTGCCTTTCTCTTGA ACACTTGGGAGGGTGTGTAGAAA 1 14 8 1.1.1.1.8.14 BCBC-5B-0 14130380 P218284 Olfr541 ProximalPromoter P218284 ProximalPromoter Unique Tile chr7:140554572-140555492 (+) NM_146962 + 80 140555572 258964 Olfr541 MOR253-3 olfactory receptor 541 MGI:3030375 Mm.389986 7 - NM_146963 + 12346 140542226 18344 Olfr45 0 GAGAGAGAGGAAGGAAGGAAGGA CTCTCTGCAGTCAGAAAGGGAAG 1 14 9 1.1.1.1.9.14 BCBC-5B-0 14130399 P219406 Olfr777 ProximalPromoter P219406 ProximalPromoter Unique Tile chr10:128672206-128673228 (-) NM_146544 - 64 128672270 258537 Olfr777 MGC129186|MOR114-9 olfactory receptor 777 MGI:3030611 Mm.271447 10 - NM_207559 + 8295 128663911 404321 Olfr776 0 CAGCAAAAAGAAAGCATTGTGA GTTTTCAGTTGTGGATCATCCGT 1 14 10 1.1.1.1.10.14 BCBC-5B-0 14130418 P220246 Dub1 ProximalPromoter P220246 ProximalPromoter Unique Tile chr7:104729914-104730933 (+) NM_007887 + 98 104730835 13531 Dub1 - deubiquitinating enzyme 1 MGI:107699 Mm.389929 7 7 E3|7 51.5 cM NM_201409 - 13589 104716325 381944 Dub1a 0 GTAGACCAGGGTAGCCTCCAACT TTACCTTCTTGGGAGGAAAGAGC 1 14 11 1.1.1.1.11.14 BCBC-5B-0 14130437 P220996 Rdhe2 ProximalPromoter P220996 ProximalPromoter Unique Tile chr4:3946826-3947873 (-) NM_181989 - 16 3946810 242285 Rdhe2 MGC124012|MGC124013|Scdr9 retinal short chain dehydrogenase reductase 2 MGI:2668443 Mm.98096 4 4 A1 RDHE2 195814 0 CTTTGAGTTTTCCAGTGTCCACC CCCTTTAAAATTTTCTCATGCCC 1 14 12 1.1.1.1.12.14 BCBC-5B-0 14130456 P222118 A530095I07Rik ProximalPromoter P222118 ProximalPromoter Unique Tile chr13:70011301-70012214 (-) NM_207226 - 94 70011395 210373 A530095I07Rik Gm530 RIKEN cDNA A530095I07 gene MGI:2685376 Mm.255451 13 13 C1 NM_198600 - 10090 70001211 210106 Pols 2 CTCAGTGGTTAAGGGCACTGACT GATCCTCGGCTTTCTAGAGGGTA 1 14 13 1.1.1.1.13.14 BCBC-5B-0 14130475 P222868 Dusp11 Enhancer P222868 Enhancer Unique Tile chr6:85926004-85927103 (-) NM_028099 - 152 85927255 72102 Dusp11 2010300F21Rik|AI481497 dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) MGI:1919352 Mm.24007 6 6 C3 DUSP11 8446 NM_176842 + 38923 85887081 69786 Tprkb 0 AAGAAGAAGGGCAGAAACCACAT TGCCCCGAAGGTTTTTATTCTTA 1 14 14 1.1.1.1.14.14 BCBC-5B-0 14130494 P223708 Pim1 ProximalPromoter P223708 ProximalPromoter Unique Tile chr17:29217219-29218360 (+) NM_008842 + 304 29218056 18712 Pim1 Pim-1 proviral integration site 1 MGI:97584 Mm.328931; Mm.405293; Mm.328931; Mm.405293; Mm.328931; Mm.405293; Mm.328931; Mm.405293; Mm.328931; Mm.405293; Mm.328931; Mm.405293; Mm.328931; Mm.405293 17 17 A3.3|17 16.4 cM PIM1 5292 0 CCTTCCATTTCTCACAACTTGCT ACTCCAGGGGCTCCTTCTCTT 1 14 15 1.1.1.1.15.14 BCBC-5B-0 14130513 P224830 9930012K11Rik ProximalPromoter P224830 ProximalPromoter Unique Tile chr14:68894664-68895627 (-) NM_001004155 - 113 68894551 268759 9930012K11Rik AU016692|MGC91159 RIKEN cDNA 9930012K11 gene MGI:2145726 Mm.12148 14 14 D2 NM_145978 - 17125 68912752 213019 Pdlim2 0 ACAGAGGACTGCAACTCAGCTCT ACTGCCTTCCCTAGGCTCATATC 1 14 16 1.1.1.1.16.14 BCBC-5B-0 14130532 P225580 5430419D17Rik ProximalPromoter P225580 ProximalPromoter Unique Tile chr7:130964628-130965551 (+) NM_175166 + 2 130965549 71395 5430419D17Rik - RIKEN cDNA 5430419D17 gene MGI:1918645 Mm.118845 7 7 F3 0 ACAAGCTACAGTCACCTGGGAAG CTACTGGCTAGCCTCAAGTTCCA 1 14 17 1.1.1.1.17.14 BCBC-5B-0 14130551 P227000 Tmem100 Pdx1 P227000 Pdx1 Unique Tile chr11:89846509-89847434 (+) NM_026433 + 72 89846437 67888 Tmem100 1810057C19Rik|AV011897 transmembrane protein 100 MGI:1915138 Mm.212428 11 11 C TMEM100 55273 NM_008796 - 27554 89818955 18559 Pctp 0 CATAAGGATTTTAAACGGGGGAA GCTTCTCATGGTTTCAGGTGTG 1 14 18 1.1.1.1.18.14 BCBC-5B-0 14130570 P227264 Pdx1 P227264 Pdx1 Unique Tile chr5:151516880-151517816 (+) 1 ACAGACCAACAGACACACACACA ACTGCTCAGGATAGATGAATGCC 1 14 19 1.1.1.1.19.14 BCBC-5B-0 14130589 P002398 Stratagene PCR 6 P002398 Spike Control Negative Stratagene PCR 6 1 14 20 1.1.1.1.20.14 BCBC-5B-0 14130229 P211046 1700019E19Rik PufferfishHuman P211046 PufferfishHuman Unique Tile chr12:87004615-87005660 (-) NM_029601 + 32905 86971710 76411 1700019E19Rik R75064 RIKEN cDNA 1700019E19 gene MGI:1923661 Mm.292345 12 12 D2 C14orf179 112752 NM_009368 - 36471 86968144 21809 Tgfb3 1 CAAACCTACACCTGACACCTTCC AAACATTCGAGACAAAGCAGAGC 1 15 1 1.1.1.1.1.15 BCBC-5B-0 14130248 P211886 PufferfishHuman P211886 PufferfishHuman Unique Tile chr11:11653242-11654306 (+) 0 CTCTGAGTTGTGAGGAAAGGGAA GATTACCACATAGGAGGCCAACA 1 15 2 1.1.1.1.2.15 BCBC-5B-0 14130267 P213008 Eps15l1 Enhancer P213008 Enhancer Unique Tile chr8:75349384-75350344 (-) NM_007944 - 100 75350444 13859 Eps15l1 9830147J04Rik|AI593686|Eps15-rs|Eps15R epidermal growth factor receptor pathway substrate 15-like 1 MGI:104582 Mm.288894 8 8 C1 EPS15L1 58513 NM_029782;NM_028500; - 13801 75364145 73316 Calr3 1 AGAAAGATAAGTCGTCGCGGAAG GTTAGGCAAAATGTGCTTTCCAC 1 15 3 1.1.1.1.3.15 BCBC-5B-0 14130286 P213758 Dkk1 Enhancer P213758 Enhancer Unique Tile chr19:30613638-30614711 (-) NM_010051 - 782 30615493 13380 Dkk1 mdkk-1 dickkopf homolog 1 (Xenopus laevis) MGI:1329040 Mm.214717 19 19 C2 DKK1 22943 NM_001037169 - 7962 30605676 546723 LOC546723 0 AAATGCTCTGGTTCTGTCAAAGC CAAGGTTTTCAATGATGCTTTCC 1 15 4 1.1.1.1.4.15 BCBC-5B-0 14130305 P214880 Tmem4 Enhancer P214880 Enhancer Unique Tile chr10:127720554-127721486 (+) NM_019953 + 3921 127725407 56530 Tmem4 5330432A10Rik|AW229003|D10Bwg1546e|Zsig9 transmembrane protein 4 MGI:1928477 Mm.339436; Mm.44220; Mm.339436; Mm.44220; Mm.339436; Mm.44220; Mm.339436; Mm.44220; Mm.339436; Mm.44220; Mm.339436; Mm.44220; Mm.339436; Mm.44220; Mm.339436; Mm.44220; Mm.339436; Mm.44220; Mm.339436; Mm.44220; Mm.339436; Mm.44220; Mm.339436; Mm.44220; Mm.339436; Mm.44220; Mm.339436; Mm.44220 10 10 D3|10 72.0 cM TMEM4 10330 NM_133992 + 14232 127706322 103135 Usp52 0 CCCCAGTCTTCTCTGTATTCCCT GTTCTAACACTCAGGAGGAGGCA 1 15 5 1.1.1.1.5.15 BCBC-5B-0 14130324 P215720 Wdr55 Enhancer P215720 Enhancer Unique Tile chr18:36882608-36883596 (+) NM_026464 + 2616 36886212 67936 Wdr55 2410080P20Rik|C80692 WD repeat domain 55 MGI:1915186 Mm.271719 18 18 B2 WDR55 54853 NM_173383 - 8592 36892188 213236 Dnd1 0 CAAGTGAGTACACATGGGCAGAG CATTTAATGGAACATGCTGGACA 1 15 6 1.1.1.1.6.15 BCBC-5B-0 14130343 P216470 Enhancer P216470 Enhancer Unique Tile chr6:8327946-8328848 (+) 0 AAGCACTCACTGAGACCCTCTTG CCAGGGAGACATAATTGGAGTTG 1 15 7 1.1.1.1.7.15 BCBC-5B-0 14130362 P217592 Rutbc1 Enhancer P217592 Enhancer Unique Tile chr11:74712254-74713055 (+) NM_197943 - 211 74713266 97761 Rutbc1 D630003G22Rik|R74628|mKIAA0397 RUN and TBC1 domain containing 1 MGI:2144695 Mm.245894 11 11 B5 RUTBC1 9905 NM_177325 + 1246 74714301 104662 Tsr1 1 CACCTGGTAGACCCAGCTAGAGA GTCAAAGAAAAGCTGCTGTGGAA 1 15 8 1.1.1.1.8.15 BCBC-5B-0 14130381 P218260 Kcnc1 ProximalPromoter P218260 ProximalPromoter End Repeat Tile chr7:46298527-46299426 (+) NM_008421 + 33843 46265583 16502 Kcnc1 C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw potassium voltage gated channel, Shaw-related subfamily, member 1 MGI:96667 Mm.249386 7 7 B3|7 23.5 cM KCNC1 3746 1 CACACACACACACACACACACAC AAGGTCTGACTCATCACAGGAGC 1 15 9 1.1.1.1.9.15 BCBC-5B-0 14130400 P219100 Il9r Enhancer P219100 Enhancer Unique Tile chr11:32095962-32097023 (-) NM_008374 - 3199 32100222 16199 Il9r MGC130502 interleukin 9 receptor MGI:96564 Mm.384 11 11 A4 IL9R 3581 NM_030093 + 8391 32105414 78372 3300001G02Rik 0 AGTTATGTGCTGGTCGAGTCTCC AAGGCAGAAGTGGAGTCACAAAG 1 15 10 1.1.1.1.10.15 BCBC-5B-0 14130419 P220222 Hist4h4 ProximalPromoter P220222 ProximalPromoter Unique Tile chr6:136768633-136769537 (-) NM_175652 - 58 136768575 320332 Hist4h4 B130044J01Rik histone 4, H4 MGI:2448443 Mm.246720 6 6 G1 HIST4H4 121504 NM_177688 + 2924 136772461 232440 H2afj 0 ATGTGGTTGCTGGAATTTGAACT AGAGCTTATATTTCCTGGGAGCG 1 15 11 1.1.1.1.11.15 BCBC-5B-0 14130438 P220972 Sele ProximalPromoter P220972 ProximalPromoter Unique Tile chr1:165883829-165884926 (+) NM_011345 + 18 165884908 20339 Sele CD62E|E-selectin|Elam selectin, endothelial cell MGI:98278 Mm.5245 1 1 H2.2|1 86.6 cM SELE 6401 NM_011346 + 13852 165898778 20343 Sell 0 TCTCCATGCAGTTGGATGAAATA TCTCGCAGTTTTGCTGTGTAGTC 1 15 12 1.1.1.1.12.15 BCBC-5B-0 14130457 P222094 Tacc1 ProximalPromoter P222094 ProximalPromoter Unique Tile chr8:26706535-26707501 (-) NM_177089;NM_199323; - 39541 26666994 320165 Tacc1 4833447E04Rik|AA960202|B230378H13Rik transforming, acidic coiled-coil containing protein 1 MGI:2443510 Mm.308452 8 8 A2 TACC1 6867 0 GACAAACACTAGGCTAGGAGGCA CAACCAAAGCTTGGCTACTTCTG 1 15 13 1.1.1.1.13.15 BCBC-5B-0 14130476 P222934 Mbd3l1 Enhancer P222934 Enhancer Unique Tile chr9:18223759-18224710 (+) NM_028557 + 4080 18228790 73503 Mbd3l1 1700070G05Rik|1700095H13Rik|Mbd3l methyl-CpG binding domain protein 3-like 1 MGI:1920753 Mm.160088 9 9 A3 MBD3L1 85509 NM_144934 + 42704 18181055 234988 Mbd3l2 0 GCAGCTCAGGAGATAGAACAGGA TTAGAGGTCACAGGACTCTTGCC 1 15 14 1.1.1.1.14.15 BCBC-5B-0 14130495 P223684 H2-Q6 ProximalPromoter P223684 ProximalPromoter Inter Repeats Tile chr17:35034881-35035836 (+) NM_207648 + 2907 35032929 110557 H2-Q6 H-2Q6|Qa-6|Qa6 histocompatibility 2, Q region locus 6 MGI:95935 Mm.33263 17 17 B1|17 19.18 cM NM_010394 + 11432 35047268 15018 H2-Q7 2 CTCTGAGAGACAGGGTCTTCTGC GACTGCTCTTTTGAAGGTCCTGA 1 15 15 1.1.1.1.15.15 BCBC-5B-0 14130514 P224806 Klhdc8b ProximalPromoter P224806 ProximalPromoter Unique Tile chr9:108319796-108320765 (-) NM_030075 - 112 108319684 78267 Klhdc8b 4931406O17Rik kelch domain containing 8B MGI:1925517 Mm.283194 9 9 F2 KLHDC8B 200942 NM_133744 + 1117 108318679 72454 Ccdc71 0 GGCTTTAAGTCAAGGTCCCTCAT CTGGTCTCTTGCTTGCCTTAGAG 1 15 16 1.1.1.1.16.15 BCBC-5B-0 14130533 P225556 ProximalPromoter P225556 ProximalPromoter Intra Repeat: LTR Tile chr10:103962312-103963259 (+) 2 CATACCTTATGTGCTCCCACTCC CTTTTGGGGCACAATCTTATCTG 1 15 17 1.1.1.1.17.15 BCBC-5B-0 14130552 P226502 Pdx1 P226502 Pdx1 Unique Tile chr13:52373053-52373962 (+) 0 AAAACCCTAAAAGGCACTGAAGC AGAGGCTTGGAGACTCGAATTTA 1 15 18 1.1.1.1.18.15 BCBC-5B-0 14130571 P227240 Pdia5 Pdx1 P227240 Pdx1 Unique Tile chr16:35405563-35406498 (+) NM_028295 - 4122 35410620 72599 Pdia5 2700053F16Rik|AU015525|Pdir protein disulfide isomerase associated 5 MGI:1919849 Mm.71015 16 16 B3 PDIA5 10954 2 GCTATCTTGGAGGCTTCCTTCTC GTTCACTCCCAGCAACACTCATA 1 15 19 1.1.1.1.19.15 BCBC-5B-0 14130590 P002374 Stratagene PCR 4 P002374 Spike Control Negative Stratagene PCR 4 1 15 20 1.1.1.1.20.15 BCBC-5B-0 14130230 P211112 PufferfishHuman P211112 PufferfishHuman Unique Tile chr2:34132245-34133223 (+) 2 AAGGGGTGCTATCCTTTTCACTC TTTCTCCTGGTCTCAGAGATGCT 1 16 1 1.1.1.1.1.16 BCBC-5B-0 14130249 P211862 PufferfishHuman P211862 PufferfishHuman Unique Tile chr11:21955615-21956562 (-) 0 GAAACTCAGAGGAAGCCATCAGA GGCTCACAGAGTGTCACAAAATG 1 16 2 1.1.1.1.2.16 BCBC-5B-0 14130268 P212984 E2f5 Enhancer P212984 Enhancer Unique Tile chr3:14556556-14557595 (+) NM_007892 + 1142 14555414 13559 E2f5 AU024671|E2F-5 E2F transcription factor 5 MGI:105091 Mm.153415 3 3 A1 E2F5 1875 NM_028915 + 46025 14510531 71710 Lrrcc1 0 GCCAAGGCATAGGAAATAGGAGT ACCTAAGTTTAGTGTGTCGGGCA 1 16 3 1.1.1.1.3.16 BCBC-5B-0 14130287 P213734 Ncstn Enhancer P213734 Enhancer Unique Tile chr1:173914700-173915605 (+) NM_021607 - 3764 173919369 59287 Ncstn 9430068N19Rik|AA727311|Aph2|Kiaa0253|Nct|mKIAA0253 nicastrin MGI:1891700 Mm.218203 1 1 H3|1 93.5 cM NCSTN 23385 NM_009938 + 3872 173919477 12847 Copa 0 AGTTTCATTTCATTCCCAACCCT TTCTTAAGACAGGATCTCAGCCG 1 16 4 1.1.1.1.4.16 BCBC-5B-0 14130306 P214574 Uchl3 Enhancer P214574 Enhancer Unique Tile chr9:64033285-64034204 (+) NM_016723 + 48 64033237 50933 Uchl3 - ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) MGI:1355274 Mm.275970 14 14 E2.3|14 48.0 cM UCHL3 7347 NM_033607 + 79 64033206 93841 Uchl4 0 AGGTCACCAACCAGTTTCTCAAG TCTAGAACTTGGAGAGCCACCTG 1 16 5 1.1.1.1.5.16 BCBC-5B-0 14130325 P215696 Rad1 Enhancer P215696 Enhancer Unique Tile chr15:10434417-10435426 (-) NM_011232 + 3631 10430786 19355 Rad1 - RAD1 homolog (S. pombe) MGI:1316678 Mm.38376 15 15 A2 RAD1 5810 NM_026396 - 3785 10430632 67832 Bxdc2 0 AAAATGCTTTGTGGGTTACCCTT CCAGGTCCTGTGGTAGAGAGAGA 1 16 6 1.1.1.1.6.16 BCBC-5B-0 14130344 P216446 Pabpc4 Enhancer P216446 Enhancer Unique Tile chr4:122786199-122787157 (+) NM_130881;NM_148917; + 533 122785666 230721 Pabpc4 MGC11665|MGC6685 poly A binding protein, cytoplasmic 4 MGI:2385206 Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571; Mm.277091; Mm.320571 4 4 D2.2 PABPC4 8761 NM_022033 - 38748 122825905 64059 Oxct2a 0 ACATAACAGCATGTTGCCTGAGA TCCCTGTGGCCAATAGAAAACTA 1 16 7 1.1.1.1.7.16 BCBC-5B-0 14130363 P217568 Smo Enhancer P217568 Enhancer Unique Tile chr6:29686471-29687399 (+) NM_176996 + 484 29685987 319757 Smo D13Mgi8|E130215L21Rik|Smoh|bnb smoothened homolog (Drosophila) MGI:108075 Mm.29279 6 6 A3.3 SMO 6608 NM_021414 + 31143 29718542 74340 4631427C17Rik 0 GAATAGTTGGAGAAACGAGTCCG ACACTACCTCCTAGTCGGAGCCT 1 16 8 1.1.1.1.8.16 BCBC-5B-0 14130382 P218326 H2-DMb1 Enhancer P218326 Enhancer Unique Tile chr17:33752698-33753679 (+) NM_010387 + 2215 33755894 14999 H2-DMb1 AI385589|H-2Mb1|H2-Mb1 histocompatibility 2, class II, locus Mb1 MGI:95922 Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060; Mm.16373; Mm.195060 17 17 B1|17 18.58 cM NM_010388 + 2292 33755971 15000 H2-DMb2 0 TTTCTGGGAACATGATACTCCGT ACCTCTTGAGACACCACAGGAAG 1 16 9 1.1.1.1.9.16 BCBC-5B-0 14130401 P219076 Olfr584 ProximalPromoter P219076 ProximalPromoter Unique Tile chr7:102958370-102959370 (+) NM_147054 + 30 102959340 259056 Olfr584 MOR30-2 olfactory receptor 584 MGI:3030418 Mm.377813 7 - NM_147087 + 12193 102971563 259091 Olfr585 0 AGCAAGAACATACAAAAGCTGGC CCTTGAAGCCAACATGAGAGAAT 1 16 10 1.1.1.1.10.16 BCBC-5B-0 14130420 P220198 Sprrl5 Enhancer P220198 Enhancer Unique Tile chr3:92744021-92745004 (-) NM_026822 - 1692 92742329 68720 Sprrl5 1110029C13Rik small proline rich-like 5 MGI:1915970 Mm.291769 3 3 F1 NM_025984 - 10312 92733709 67127 Sprrl3 0 GGGAGGAACACATGCGTTAAGTA CATCCATCCATCCATCCATCTAT 1 16 11 1.1.1.1.11.16 BCBC-5B-0 14130439 P220948 Grk1 ProximalPromoter P220948 ProximalPromoter Unique Tile chr8:13404186-13405085 (+) NM_011881 + 28 13405057 24013 Grk1 GPRK1|RK|Rhok G protein-coupled receptor kinase 1 MGI:1345146 Mm.257501 8 - GRK1 6011 NM_009724 - 7431 13396755 11945 Atp4b 0 TATCCTTGTCCTCTGTCTTTGGC GCCCTGTGTCCACTTCAAGTATT 1 16 12 1.1.1.1.12.16 BCBC-5B-0 14130458 P221788 Akr1e1 Enhancer P221788 Enhancer Unique Tile chr13:4605548-4606468 (-) NM_018859 - 1937 4608405 56043 Akr1e1 1810061I10Rik aldo-keto reductase family 1, member E1 MGI:1914758 Mm.251908 13 13 A1 AKR1CL2 83592 NM_029901 + 32204 4573344 77337 Akr1c21 0 TTATTATTTGGCCATTCAGGTGG TTTAAGGAAACGTGCAAGCATCT 1 16 13 1.1.1.1.13.16 BCBC-5B-0 14130477 P222910 Olfr201 ProximalPromoter P222910 ProximalPromoter Unique Tile chr16:59211997-59212975 (-) NM_146994 - 76 59211921 258996 Olfr201 MOR182-2 olfactory receptor 201 MGI:3030035 Mm.377782 16 - NM_146995 - 13776 59226751 258997 Olfr202 0 TAGCTTATTTGGCTGCAATGTGA TCACTGTCACTATCCCAAATGGA 1 16 14 1.1.1.1.14.16 BCBC-5B-0 14130496 P223660 V1rh4 ProximalPromoter P223660 ProximalPromoter Unique Tile chr13:22388970-22390044 (+) NM_134213 + 42 22390002 171247 V1rh4 MGC130175 vomeronasal 1 receptor, H4 MGI:2159662 Mm.377203 13 13 A3.1 NM_134212 + 12449 22402493 171246 V1rh3 0 CTCACAGAGGCAAATGTCATCAG TGAGAGCATTTTCTGGTGTTCAA 1 16 15 1.1.1.1.15.16 BCBC-5B-0 14130515 P224782 Zdhhc23 ProximalPromoter P224782 ProximalPromoter Unique Tile chr16:43898446-43899466 (-) NM_001007460 - 64 43898382 332175 Zdhhc23 Gm1751|Gm779|nidd zinc finger, DHHC domain containing 23 MGI:2685625 Mm.327852 16 16 B4 ZDHHC23 254887 NM_153528 - 36225 43935691 207798 Gramd1c 1 CGAGCGAGAACAAGTTGGATAAG AAGGTGGCAAGAACTCAACTCAC 1 16 16 1.1.1.1.16.16 BCBC-5B-0 14130534 P225622 Olfr1490 ProximalPromoter P225622 ProximalPromoter Unique Tile chr19:13720554-13721471 (+) NM_001011832 + 7 13721464 258098 Olfr1490 MOR266-6P olfactory receptor 1490 MGI:3031324 Mm.377349 19 19 A OR10W1 81341 NM_146635 + 20423 13700131 258628 Olfr1489 2 AGATGCACTAGACTGGCCTTCTG AAGTCATTGAATCCACAGCCATT 1 16 17 1.1.1.1.17.16 BCBC-5B-0 14130553 P226478 Pdx1 P226478 Pdx1 Unique Tile chr6:126973058-126973965 (+) 1 TGGACATGTCACATCAATTAGCC ACTAGCTCTTGAAAGCCCCAAGT 1 16 18 1.1.1.1.18.16 BCBC-5B-0 14130572 P227216 Cntnap1 Pdx1 P227216 Pdx1 Unique Tile chr11:101006925-101007859 (+) NM_016782 + 14719 100992206 53321 Cntnap1 Caspr|NCP1|Nrxn4|p190 contactin associated protein 1 MGI:1858201 Mm.8021 11 - CNTNAP1 8506 NM_146030 - 19533 100987392 217198 Plekhh3 0 CAGTGGTGGCACACAACTTTAAC AGAGTGTTAGAATGGGGCACAAG 1 16 19 1.1.1.1.19.16 BCBC-5B-0 14130591 P002350 Stratagene PCR 2 P002350 Spike Control Negative Stratagene PCR 2 1 16 20 1.1.1.1.20.16 BCBC-5B-0 14130231 P211088 PufferfishHuman P211088 PufferfishHuman Unique Tile chr2:33607492-33608424 (-) 1 TTGCCATCTTTCAGGAGTTCAAT GCCGGTCTTCTACTATCAGGACA 1 17 1 1.1.1.1.1.17 BCBC-5B-0 14130250 P211838 PufferfishHuman P211838 PufferfishHuman Unique Tile chr7:137075312-137076411 (-) 0 GCAGCAAGAGAGAAAGAACAAGC CTTATCCCTACCCCATCTCCATC 1 17 2 1.1.1.1.2.17 BCBC-5B-0 14130269 P212960 Dhx15 Enhancer P212960 Enhancer Unique Tile chr5:52477513-52478608 (-) NM_007839 - 129 52478737 13204 Dhx15 DBP1|Ddx15|HRH2|MGC117685|mDEAH9 DEAH (Asp-Glu-Ala-His) box polypeptide 15 MGI:1099786 Mm.993 5 5 C1 DHX15 1665 1 GAGTGCGAGGATGTCCAAGAG TTTCAACCTAAGGAGAGCGACAG 1 17 3 1.1.1.1.3.17 BCBC-5B-0 14130288 P213800 Fh1 Enhancer P213800 Enhancer Unique Tile chr1:177461021-177462089 (-) NM_010209 - 164 177462253 14194 Fh1 Fh-1 fumarate hydratase 1 MGI:95530 Mm.41502 1 1 H4 FH 2271 NM_133809 + 6778 177468867 98256 Kmo 0 GACCTTCACGTCAGAGTGTCCC TGATGTTACAGGTGGGTGTGAAC 1 17 4 1.1.1.1.4.17 BCBC-5B-0 14130307 P214550 Fbxl3 Enhancer P214550 Enhancer Unique Tile chr14:101984574-101985546 (-) NM_015822 - 48 101985498 50789 Fbxl3 AU041772|AW212966|FBK|Fbl3a|Fbxl3a F-box and leucine-rich repeat protein 3 MGI:1354702 Mm.214746 14 14 E2.2 FBXL3 26224 1 CTCGGTGTCTGTCAACAAGGC TGCCCTTTATAGCTGAACAGGAA 1 17 5 1.1.1.1.5.17 BCBC-5B-0 14130326 P215672 Dyx1c1 Enhancer P215672 Enhancer Unique Tile chr9:72751123-72752048 (+) NM_026314 + 3922 72755970 67685 Dyx1c1 1700010I24Rik|EKN1 dyslexia susceptibility 1 candidate 1 homolog (human) MGI:1914935 Mm.31817 9 9 D DYX1C1 161582 NM_028116 + 28179 72722944 72135 Pygo1 0 CAACACCATGCAGGAGTTTAACA CTGGAGTTACAGAAGGCAGTGGT 1 17 6 1.1.1.1.6.17 BCBC-5B-0 14130345 P216422 Sh3bgrl3 Enhancer P216422 Enhancer Unique Tile chr4:133404262-133405270 (-) NM_080559 - 3433 133400829 73723 Sh3bgrl3 1110004L05Rik|AU022188 SH3 domain binding glutamic acid-rich protein-like 3 MGI:1920973 Mm.22240 4 4 D3 SH3BGRL3 83442 NM_026257 + 29571 133374691 67586 Ubxd5 0 AAGCCTTGAGCTATAAACAGGGG AAAAAGAACAGCCACACGAGAAG 1 17 7 1.1.1.1.7.17 BCBC-5B-0 14130364 P217262 Slc38a5 Enhancer P217262 Enhancer Unique Tile chrX:7428662-7429656 (+) NM_172479 + 310 7428352 209837 Slc38a5 C81234|E330031E14|JM24|SN2 solute carrier family 38, member 5 MGI:2148066 Mm.6055 X X A1.1 SLC38A5 92745 NM_133991 - 19297 7409365 54632 Ftsj1 0 GCTTGTCAGCTCTCCACTTTCTC TGCTGAGGTTGAACACTGACATT 1 17 8 1.1.1.1.8.17 BCBC-5B-0 14130383 P218302 Rplp2 Enhancer P218302 Enhancer Unique Tile chr7:141298445-141299420 (-) NM_026020 + 433 141298987 67186 Rplp2 2700049I22Rik ribosomal protein, large P2 MGI:1914436 Mm.380435 7 7 F5 RPLP2 6181 NM_022654 - 3770 141294675 57913 Lrdd 0 ACATAATAGGATAAGGACCGCCG CAACTTTTCCAAACCAGCTGAAC 1 17 9 1.1.1.1.9.17 BCBC-5B-0 14130402 P219052 Reep4 ProximalPromoter P219052 ProximalPromoter Unique Tile chr14:69279316-69280370 (+) NM_180588 + 332 69280702 72549 Reep4 2700029E10Rik receptor accessory protein 4 MGI:1919799 Mm.46742 14 14 D2 REEP4 80346 NM_021877 + 8765 69289135 15460 Hr 0 GGCATAGGCAGGTAGATCTCTGA TTAAAAGTTGCACGGAACCAGAT 1 17 10 1.1.1.1.10.17 BCBC-5B-0 14130421 P220174 Sytl2 ProximalPromoter P220174 ProximalPromoter Unique Tile chr7:90261676-90262658 (+) NM_031394;NM_001040088;NM_001040085;NM_001040087;NM_001040086; + 486 90262172 83671 Sytl2 AI266830|KIAA1597|Slp2|Slp2-a|Slp2-b|Slp2-c|Slp2-d|mKIAA1597 synaptotagmin-like 2 MGI:1933366 Mm.26751 7 7 E1 SYTL2 54843 0 GGAAGAAAAGCTACTTCCCCAAA GACCCCTGATGAGAAGAGAACAA 1 17 11 1.1.1.1.11.17 BCBC-5B-0 14130440 P221014 Cryab Enhancer P221014 Enhancer Unique Tile chr9:50503081-50504022 (+) NM_009964 + 468 50503554 12955 Cryab Crya-2|Crya2 crystallin, alpha B MGI:88516 Mm.178 9 9 A5.3|9 29.0 cM CRYAB 1410 NM_024441 - 501 50504523 69253 Hspb2 0 TCCCAGGATCACTCTCTCTTTTG ATCCTGCCTCTTGCTTTCTCTTT 1 17 12 1.1.1.1.12.17 BCBC-5B-0 14130459 P221764 Rgl1 Enhancer P221764 Enhancer Unique Tile chr1:154386106-154387038 (-) NM_016846 - 291 154387329 19731 Rgl1 KIAA0959|Rgl|mKIAA0959 ral guanine nucleotide dissociation stimulator,-like 1 MGI:107484 Mm.245270 1 1 G2 RGL1 23179 0 TCTCTGTGCCTCTTCTCCCTAGA GCTCCTTCCTCTACCTCTTCACC 1 17 13 1.1.1.1.13.17 BCBC-5B-0 14130478 P222886 Olfr290 ProximalPromoter P222886 ProximalPromoter Unique Tile chr7:84791333-84792060 (+) NM_146416 + 95 84791965 258411 Olfr290 MOR254-1 olfactory receptor 290 MGI:3030124 Mm.371709 7 - 0 CCTCCAGAGATAGAATGGGGATT ACAAAGGCCACAAAGAGTGGATA 1 17 14 1.1.1.1.14.17 BCBC-5B-0 14130497 P223636 Rnmtl1 ProximalPromoter P223636 ProximalPromoter Unique Tile chr11:76058924-76059825 (+) NM_183263 + 133 76059958 67390 Rnmtl1 4833420N02Rik|AI255153|HC90 RNA methyltransferase like 1 MGI:1914640 Mm.24886 11 11 B5 RNMTL1 55178 NM_026029 - 26 76059851 67201 2700085E05Rik 1 AACCTGTGTTGACTGATTTGTGC AGCTCTGCACTTCGTTTTCAAAG 1 17 15 1.1.1.1.15.17 BCBC-5B-0 14130516 P224476 Gas2 Enhancer P224476 Enhancer Unique Tile chr7:51747448-51748418 (+) NM_008087 + 280 51747168 14453 Gas2 Gas-2 growth arrest specific 2 MGI:95657 Mm.207360; Mm.386823; Mm.392015; Mm.207360; Mm.386823; Mm.392015; Mm.207360; Mm.386823; Mm.392015; Mm.207360; Mm.386823; Mm.392015; Mm.207360; Mm.386823; Mm.392015; Mm.207360; Mm.386823; Mm.392015; Mm.207360; Mm.386823; Mm.392015; Mm.207360; Mm.386823; Mm.392015; Mm.207360; Mm.386823; Mm.392015 7 7 B4|7 26.8 cM GAS2 2620 0 TTCCATCCCTATTGTTGAGCAGT AGACAAGCTAGGCAAATCAGTCG 1 17 16 1.1.1.1.16.17 BCBC-5B-0 14130535 P225598 1700065O13Rik ProximalPromoter P225598 ProximalPromoter Unique Tile chr17:32771704-32772716 (-) NM_028543 - 67 32771771 73451 1700065O13Rik AI839635 RIKEN cDNA 1700065O13 gene MGI:1920701 Mm.129453 17 17 B1 NM_001009544 - 32050 32804766 74042 4921501E09Rik 0 TGTTTGTCACTGTGATGTTGACG TCCTCTTTCATATGCATCCAGGT 1 17 17 1.1.1.1.17.17 BCBC-5B-0 14130554 P226454 Agpat3 Pdx1 P226454 Pdx1 Unique Tile chr10:77725335-77726600 (+) NM_053014 - 5829 77732429 28169 Agpat3 AW061257|AW493985|D10Jhu12e 1-acylglycerol-3-phosphate O-acyltransferase 3 MGI:1336186 Mm.141230; Mm.394459; Mm.141230; Mm.394459; Mm.141230; Mm.394459; Mm.141230; Mm.394459; Mm.141230; Mm.394459; Mm.141230; Mm.394459; Mm.141230; Mm.394459; Mm.141230; Mm.394459; Mm.141230; Mm.394459; Mm.141230; Mm.394459; Mm.141230; Mm.394459; Mm.141230; Mm.394459; Mm.141230; Mm.394459; Mm.141230; Mm.394459; Mm.141230; Mm.394459; Mm.141230; Mm.394459 10 10 C1|10 41.8 cM AGPAT3 56894 0 CCCAGCTATACTACTCTTGGGCA GACAGACAAGCTGTCACCTCAGA 1 17 18 1.1.1.1.18.17 BCBC-5B-0 14130573 P227192 Pdx1 P227192 Pdx1 Unique Tile chr8:116961197-116962129 (+) 0 AAAAAGAGAGGGAACATTCGAGG ATGCATCTCTTCATCTGAGTCCC 1 17 19 1.1.1.1.19.17 BCBC-5B-0 14130592 P002416 Stratagene PCR 7 P002416 Spike Control Negative Stratagene PCR 7 1 17 20 1.1.1.1.20.17 BCBC-5B-0 14130232 P211064 PufferfishHuman P211064 PufferfishHuman Unique Tile chr2:169004574-169005544 (-) 1 GTGGGAGTGAAGGGGGTAAATAG AGCACACATTTCTAATGGGCAGT 1 18 1 1.1.1.1.1.18 BCBC-5B-0 14130251 P211814 PufferfishHuman P211814 PufferfishHuman Unique Tile chr14:21047671-21048737 (-) 0 GATAAAGCTAGAGCACACAGGGC TATTGAAAAATCTCCCTCCCAGG 1 18 2 1.1.1.1.2.18 BCBC-5B-0 14130270 P212654 miRNA P212654 miRNA No Hits Tile 0 ccagggctgtacagagagaggta gtcctccataaggcctccttaga 1 18 3 1.1.1.1.3.18 BCBC-5B-0 14130289 P213776 Emp1 Enhancer P213776 Enhancer Unique Tile chr6:135329494-135330398 (+) NM_010128 + 871 135328623 13730 Emp1 TMP epithelial membrane protein 1 MGI:107941 Mm.182785 6 6 G1|6 65.0 cM EMP1 2012 0 GTTTCAAATAAACCTTGGGAGGG AGGGACAGTGGAGTTTGAGACAG 1 18 4 1.1.1.1.4.18 BCBC-5B-0 14130308 P214526 Col5a1 Enhancer P214526 Enhancer Unique Tile chr2:27710732-27711731 (+) NM_015734 + 2039 27708693 12831 Col5a1 - procollagen, type V, alpha 1 MGI:88457 Mm.7281 2 2 A2-B|2 18.0 cM COL5A1 1289 0 AGGTCAGGAGAAAGTGCAAACAG TACCAGCACACTAGCCACCAGTA 1 18 5 1.1.1.1.5.18 BCBC-5B-0 14130327 P215648 Fam18b Enhancer P215648 Enhancer Unique Tile chr11:62692589-62693498 (+) NM_026210 + 2186 62695684 67510 Fam18b 1810036I24Rik family with sequence similarity 18, member B MGI:1914760 Mm.394390; Mm.9806; Mm.394390; Mm.9806; Mm.394390; Mm.9806; Mm.394390; Mm.9806; Mm.394390; Mm.9806; Mm.394390; Mm.9806; Mm.394390; Mm.9806; Mm.394390; Mm.9806; Mm.394390; Mm.9806 11 11 B2 FAM18B 51030 NM_001033669 + 29326 62663263 213980 Fbxw10 0 GGGAATCCCACTCTCTGGAATAG TGGGTCGACCTCTTTAGTGGATA 1 18 6 1.1.1.1.6.18 BCBC-5B-0 14130346 P216488 Crk Enhancer P216488 Enhancer Unique Tile chr11:75495937-75496873 (+) NM_133656 + 417 75495520 12928 Crk Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|Crkol v-crk sarcoma virus CT10 oncogene homolog (avian) MGI:88508 Mm.280125 11 11 A-D|11 44.15 cM CRK 1398 NM_008659 + 28165 75467772 17913 Myo1c 1 CAGAGAGGGCTAGAGTGAACCTG TTGCCAAGACAACTGCAATAAGA 1 18 7 1.1.1.1.7.18 BCBC-5B-0 14130365 P217238 Mthfd1l Enhancer P217238 Enhancer Unique Tile chr10:6372131-6373070 (-) NM_172308 - 353 6373423 270685 Mthfd1l 2410004L15Rik|AI647056|Fthfsdc1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like MGI:1924836 Mm.184752 10 10 A1 MTHFD1L 25902 0 ATCGTCAGGTGAGTGTCCTGTTT CTTCATAGCACGTGAAAACCACA 1 18 8 1.1.1.1.8.18 BCBC-5B-0 14130384 P218278 Lrba Enhancer P218278 Enhancer Unique Tile chr3:86310685-86311745 (+) NM_030695 + 69 86310616 80877 Lrba C80285|D3Ertd775e|Lab300|Lba LPS-responsive beige-like anchor MGI:1933162 Mm.370272 3 - LRBA 987 1 AGGAGGAACTTTGGACCTCAGTG TCCAAATTCTCCATTGAACACCT 1 18 9 1.1.1.1.9.18 BCBC-5B-0 14130403 P219028 Tnfsf7 ProximalPromoter P219028 ProximalPromoter Unique Tile chr17:56835256-56836198 (-) NM_011617 - 146 56835110 21948 Tnfsf7 CD27LG|Cd27l|Cd70 tumor necrosis factor (ligand) superfamily, member 7 MGI:1195273 Mm.42228 17 17 C-D|17 20.0 cM TNFSF7 970 NM_019418 - 43314 56879512 50930 Tnfsf14 0 CGCCTCTGCCAGTTCTAAGTAAA GAGGTTCAGTATTGGGCTGAATG 1 18 10 1.1.1.1.10.18 BCBC-5B-0 14130422 P219868 Eps8 Enhancer P219868 Enhancer Unique Tile chr6:137612159-137613174 (-) NM_007945 - 142 137613316 13860 Eps8 AW261790 epidermal growth factor receptor pathway substrate 8 MGI:104684 Mm.235346 6 6 G1|6 66.0 cM EPS8 2059 1 ATAAGGGTCTTTGTGAGCCGTC TAGAATGGCATCCTTTCAAGAGC 1 18 11 1.1.1.1.11.18 BCBC-5B-0 14130441 P220990 Bai1 ProximalPromoter P220990 ProximalPromoter Unique Tile chr15:74389965-74390866 (+) NM_174991 + 47416 74343450 107831 Bai1 B830018M07Rik|KIAA4089|R75078|mKIAA4089 brain-specific angiogenesis inhibitor 1 MGI:1933736 Mm.43133 15 15 D3 BAI1 575 1 AGAGACAAGGAAACTGAGGCAAG CTCTTCGGAGCTGGTGACCTT 1 18 12 1.1.1.1.12.18 BCBC-5B-0 14130460 P221740 4930527D15Rik Enhancer P221740 Enhancer Unique Tile chr8:87161531-87162478 (-) NM_026350 - 1066 87160465 67736 4930527D15Rik C77430 RIKEN cDNA 4930527D15 gene MGI:1914986 Mm.30095 8 8 C3 MGC10471 81576 NM_026423 - 14100 87147431 67873 2410018C20Rik 0 ACCTGACCACACAAAGACTGTCA AAGAGGTTTATTCAATGGTGGCA 1 18 13 1.1.1.1.13.18 BCBC-5B-0 14130479 P222862 Casp14 Enhancer P222862 Enhancer Unique Tile chr10:78122593-78123493 (-) NM_009809 - 1222 78121371 12365 Casp14 MGC123948|MGC123949|MICE|mini-ICE caspase 14 MGI:1335092 Mm.20940 10 10 C1 CASP14 23581 0 CCACCTGAGTTCTATCCCTGAGA GCTTTCCGCCTTAGGTTATGAGT 1 18 14 1.1.1.1.14.18 BCBC-5B-0 14130498 P223702 Klhdc1 ProximalPromoter P223702 ProximalPromoter Unique Tile chr12:70159419-70160319 (+) NM_178253 + 117 70160436 271005 Klhdc1 - kelch domain containing 1 MGI:2672853 Mm.180969 12 12 C2 KLHDC1 122773 NM_011133 - 12624 70146795 18974 Pole2 0 AATTATCACCGCGATTTAGGGTT TCTGGGCTTCTTAGGGCTCTATT 1 18 15 1.1.1.1.15.18 BCBC-5B-0 14130517 P224452 Klk7 Enhancer P224452 Enhancer Unique Tile chr7:43675279-43676355 (+) NM_011872 + 2980 43679335 23993 Klk7 Prss6|SCCE kallikrein 7 (chymotryptic, stratum corneum) MGI:1346336 Mm.251227 7 7 B2 KLK7 5650 NM_008940 + 9175 43666104 259277 Klk8 0 TGAGGTGTGTGTGTACCTGTGTG TTGAAAGACCTGTTGATGTCGAA 1 18 16 1.1.1.1.16.18 BCBC-5B-0 14130536 P225574 Ccdc116 ProximalPromoter P225574 ProximalPromoter Unique Tile chr16:17060813-17061716 (-) NM_029779 - 21 17060792 76872 Ccdc116 4930432J16Rik coiled-coil domain containing 116 MGI:1924122 Mm.101656 16 16 B1 CCDC116 164592 NM_026940 + 272 17060541 69101 1810015A11Rik 0 GTGAGTGCCAGGATATCAGAGGT GTCTTCACGCCAACCTGTCTG 1 18 17 1.1.1.1.17.18 BCBC-5B-0 14130555 P226430 Cxxc5 Pdx1 P226430 Pdx1 Unique Tile chr18:35964375-35965282 (+) NM_133687 + 8584 35955791 67393 Cxxc5 4930415K17Rik|MGC101987 CXXC finger 5 MGI:1914643 Mm.94560 18 18 B3 CXXC5 51523 0 TGGACACCTTCTGACTCAGTGAA GTAGAACTGGCCTTTCAGTCCCT 1 18 18 1.1.1.1.18.18 BCBC-5B-0 14130574 P226310 Pdx1 P226310 Pdx1 Unique Tile chr1:81389350-81390254 (+) 0 CCACCACATTTGTTCCTCTTTCT ATGAACCTCTGTTCAGTGGTGGT 1 18 19 1.1.1.1.19.18 BCBC-5B-0 14130593 P002392 Stratagene PCR 5 P002392 Spike Control Negative Stratagene PCR 5 1 18 20 1.1.1.1.20.18 BCBC-5B-0 14130233 P211040 PufferfishHuman P211040 PufferfishHuman Unique Tile chr7:69528627-69529669 (+) 0 GGCTAAGAAAACCTGTCCCTCTC ACATAGCATCTCACCATTTGCCT 1 19 1 1.1.1.1.1.19 BCBC-5B-0 14130252 P211880 PufferfishHuman P211880 PufferfishHuman Unique Tile chr2:44519050-44520014 (-) 0 TGAAAAAGAGGGGTTAAAAAGGC AAAGGGCATGTCATTAAAAGGGT 1 19 2 1.1.1.1.2.19 BCBC-5B-0 14130271 P212630 miRNA P212630 miRNA Unique Tile chr5:138391209-138392193 (+) mmu-mir-25 0 TCTTCATCCCCTTGTCATCCTTA CATTGGGTCAACAACACTCACAT 1 19 3 1.1.1.1.3.19 BCBC-5B-0 14130290 P213752 Dad1 Enhancer P213752 Enhancer Unique Tile chr14:53210564-53211647 (-) NM_010015 - 210 53211857 13135 Dad1 AI323713 defender against cell death 1 MGI:101912 Mm.319038 14 14 C2|14 24.0 cM DAD1 1603 NM_134076 + 5654 53217301 105501 Abhd4 0 CATCCTAGCGGGTAATGATTCTG CCTCTTACTGTTCTCTGTCGGGA 1 19 4 1.1.1.1.4.19 BCBC-5B-0 14130309 P214502 Hspb7 Enhancer P214502 Enhancer Unique Tile chr4:140694660-140695563 (+) NM_013868 + 881 140693779 29818 Hspb7 27kDa|Hsp25-2|MGC107591|cvHsp heat shock protein family, member 7 (cardiovascular) MGI:1352494 Mm.46181 4 4 E1 HSPB7 27129 NM_019701 - 6570 140688090 56365 Clcnkb 0 GACATCATTGTCACCACCTTCAA CCAGCACATAGTGTTCAGTGGAG 1 19 5 1.1.1.1.5.19 BCBC-5B-0 14130328 P215342 Tomm7 Enhancer P215342 Enhancer Unique Tile chr5:23358103-23359163 (-) NM_025394 - 3915 23354188 66169 Tomm7 1110020J08Rik|AW047273|TOM7 translocase of outer mitochondrial membrane 7 homolog (yeast) MGI:1913419 Mm.291868; Mm.397607; Mm.291868; Mm.397607; Mm.291868; Mm.397607; Mm.291868; Mm.397607; Mm.291868; Mm.397607; Mm.291868; Mm.397607; Mm.291868; Mm.397607 5 5 A3 TOMM7 54543 0 AAACTTTGGCAGTCAGACCTCAG TTTGTCTTGAAAAGCCAGAGAGG 1 19 6 1.1.1.1.6.19 BCBC-5B-0 14130347 P216464 Rac3 Enhancer P216464 Enhancer Unique Tile chr11:120537900-120538802 (+) NM_133223 + 341 120537559 170758 Rac3 Rac1B RAS-related C3 botulinum substrate 3 MGI:2180784 Mm.34008 11 11 E2 RAC3 5881 NM_026428 - 4532 120543334 67880 Dcxr 0 GCTGAAGCTATCCACTTCTTCCA CAGAGTTCGAGGCTAGTTCCAAG 1 19 7 1.1.1.1.7.19 BCBC-5B-0 14130366 P217214 Rpl32 Enhancer P217214 Enhancer Unique Tile chr6:115773233-115774331 (-) NM_172086 - 0 115774331 19951 Rpl32 AU020185|rpL32-3A ribosomal protein L32 MGI:98038 Mm.104368 6 6 E3|6 50.5 cM RPL32 6161 NM_198603 - 29700 115804031 212516 BC060267 2 GCCATCTGTTTTACGGTGAGTCT ACTAAATCTGACCTGGACCCACA 1 19 8 1.1.1.1.8.19 BCBC-5B-0 14130385 P218254 Prlpc4 Enhancer P218254 Enhancer Unique Tile chr13:27587790-27588723 (-) NM_028477 - 912 27589635 73244 Prlpc4 1600017L04Rik|3830403L08Rik|MGC129484|MGC129485|PLP-Cd|Plpcd prolactin-like protein C 4 MGI:1920494 Mm.215193 13 13 A3.1 NM_023332 - 15721 27572069 67310 Prlpc2 0 TCACAAACCCATTTCCATTATCC GGCATTTGAGCTCATTTTCAGTT 1 19 9 1.1.1.1.9.19 BCBC-5B-0 14130404 P219094 Olfr1221 ProximalPromoter P219094 ProximalPromoter Unique Tile chr2:88913334-88914319 (-) NM_146902 - 15 88913349 258904 Olfr1221 MOR233-3 olfactory receptor 1221 MGI:3031055 Mm.330377 2 - NM_001011860 - 12249 88926568 258177 Olfr1222 0 GGTGCGTAGCCTCTGAATCTTTA GGCTTTGATTTTGCATGATTCTC 1 19 10 1.1.1.1.10.19 BCBC-5B-0 14130423 P219844 4930478A21Rik ProximalPromoter P219844 ProximalPromoter Unique Tile chr15:100107785-100108766 (+) NM_183109 + 104 100108870 75002 4930478A21Rik - RIKEN cDNA 4930478A21 gene MGI:1922252 Mm.261400 15 15 F1 NM_027334 + 24084 100132850 70152 Mettl7a 0 TGAGGCTGCTTGGTCATAAAGAT GGACCTCAGGGTAGGAAGATGAG 1 19 11 1.1.1.1.11.19 BCBC-5B-0 14130442 P220966 Sp4 Enhancer P220966 Enhancer Unique Tile chr12:118744361-118745336 (-) NM_009239 - 135 118745471 20688 Sp4 5730497N03Rik|HF-1b|HF1-b trans-acting transcription factor 4 MGI:107595 Mm.259312 12 12 F2|12 60.0 cM SP4 6671 0 GATGAGCGGTACGTATTCTCCAC AGTCGGGAGGGGGTTATTTATTT 1 19 12 1.1.1.1.12.19 BCBC-5B-0 14130461 P221716 Myom2 Enhancer P221716 Enhancer Unique Tile chr8:15060816-15061741 (+) NM_008664 + 3177 15057639 17930 Myom2 AW146149|MGC141540|MGC141541 myomesin 2 MGI:1328358 Mm.272115 8 8 A1.1 MYOM2 9172 NM_001007591 - 14770 15046046 434285 LOC434285 0 TTGGAAGATGGGTGGAGTAAAGA AGCCCTGATATTCCACACTGAAA 1 19 13 1.1.1.1.13.19 BCBC-5B-0 14130480 P222556 Matn2 Enhancer P222556 Enhancer Unique Tile chr15:34251435-34252392 (+) NM_016762 + 36 34251399 17181 Matn2 Crtm2|MGC102477|matrilin-2 matrilin 2 MGI:109613 Mm.3511; Mm.396856; Mm.3511; Mm.396856; Mm.3511; Mm.396856; Mm.3511; Mm.396856; Mm.3511; Mm.396856; Mm.3511; Mm.396856; Mm.3511; Mm.396856; Mm.3511; Mm.396856; Mm.3511; Mm.396856; Mm.3511; Mm.396856; Mm.3511; Mm.396856 15 15 B3.3 MATN2 4147 0 GAGACTGACACTCACAGCTGCTC TCCTAGAATTAGGGAGGGGATGA 1 19 14 1.1.1.1.14.19 BCBC-5B-0 14130499 P223678 Tll1 Enhancer P223678 Enhancer Unique Tile chr8:67096354-67097403 (-) NM_009390 - 782 67098185 21892 Tll1 Tll|Tll-1 tolloid-like MGI:106923 Mm.5076 8 8 B3.1|8 32.4 cM TLL1 7092 0 AGTGCCTGTCTAAGTTGGGACTG TTCACACCTCTTGATGGAACAGA 1 19 15 1.1.1.1.15.19 BCBC-5B-0 14130518 P224428 ProximalPromoter P224428 ProximalPromoter Unique Tile chr5:103931714-103932799 (+) 1 TGCTCTTAACCTCTGAGCCATCT GAGAGTACAGTCCGCACCACTG 1 19 16 1.1.1.1.16.19 BCBC-5B-0 14130537 P225550 Hist2h4; Hist1h4m; Hist1h4m ProximalPromoter P225550 ProximalPromoter Unique Tile chr13:21839612-21840553 (-) NM_175657;NM_033596; - 11 21839623 97122; 319161; 319161 Hist2h4; Hist1h4m; Hist1h4m H4|X04652; -; - histone 2, H4; histone 1, H4m; histone 1, H4m MGI:2140113; MGI:2448441; MGI:2448441 Mm.227295; Mm.246720; Mm.255646; Mm.227295; Mm.246720; Mm.255646; Mm.227295; Mm.246720; Mm.255646; Mm.227295; Mm.246720; Mm.255646; Mm.227295; Mm.246720; Mm.255646; Mm.227295; Mm.246720; Mm.255646; Mm.227295; Mm.246720; Mm.255646; Mm.227295; Mm.246720; Mm.255646; Mm.261664; Mm.261664 3; 13; 13 3 F1-F2; 13 A3.1; 13 A3.1 HIST2H4A; ; 8370; ; NM_178185;NM_178184; - 387 21840940 319170; 319171; 319170; 319171 Hist1h2an; Hist1h2ao; Hist1h2an; Hist1h2ao 0 AAATAAGACCAGCCGTTCACTCA ACGACCAGACATGATGAAGACAA 1 19 17 1.1.1.1.17.19 BCBC-5B-0 14130556 P226496 Pdx1 P226496 Pdx1 Unique Tile chr12:76588112-76589021 (+) 0 TCGAAACTGAAGCAGAGACCTTC GGAACATCAGCCCTGTATCAAAC 1 19 18 1.1.1.1.18.19 BCBC-5B-0 14130575 P226286 Pdx1 P226286 Pdx1 No Hits Tile 0 actaggtcttcactctggagggg aggatgtctctaacgtggtcagc 1 19 19 1.1.1.1.19.19 BCBC-5B-0 14130594 P002368 Stratagene PCR 3 P002368 Spike Control Negative Stratagene PCR 3 1 19 20 1.1.1.1.20.19 BCBC-5B-0 14130595 P211664 PufferfishHuman P211664 PufferfishHuman Unique Tile chr5:29985933-29986860 (+) 0 AGTTATTTGGCAGCAAGCAGAAG TACAATTTCTTCCATGGGCAACT 2 1 1 1.1.1.2.1.1 BCBC-5B-0 14130614 P212414 miRNA P212414 miRNA Unique Tile chr2:38670565-38671571 (+) mmu-mir-181a 0 TCTATTCTTCCCAGCAGCATCTC TGCACACACTACACATGAACAGG 2 1 2 1.1.1.2.2.1 BCBC-5B-0 14130633 P213536 Tspyl1 Enhancer P213536 Enhancer Unique Tile chr10:33967315-33968223 (+) NM_009433 + 3435 33971658 22110 Tspyl1 Tspyl testis-specific protein, Y-encoded-like 1 MGI:1298395 Mm.20445 10 10 B1 TSPYL1 7259 NM_030203 + 18664 33986887 72480 Tspyl4 0 TATGTCATGGGCACATTTAGCAC CAAAACTGACTAAGCCATCACCC 2 1 3 1.1.1.2.3.1 BCBC-5B-0 14130652 P214376 Enhancer P214376 Enhancer Unique Tile chr3:86164589-86165490 (+) 0 TCTCCCTATGGTTTGAGGAGGAT AGATCCCTTTGGCAGGTAGAATC 2 1 4 1.1.1.2.4.1 BCBC-5B-0 14130671 P215126 Pla2g12a Enhancer P215126 Enhancer Unique Tile chr3:129871079-129872000 (+) NM_183423;NM_023196; + 417 129870662 66350 Pla2g12a 2310004B05Rik|GXII|MGC58884|Pla2g12|Rossy|mGXII-1|mGXII-1-PLA2 phospholipase A2, group XIIA MGI:1913600 Mm.151951 3 3 H1 PLA2G12A 81579 NM_009811 + 21485 129893485 12368 Casp6 0 AAGCGAGAAAATAAAGGGACTGG AAGGAAGAGAGGCCAGTGATACC 2 1 5 1.1.1.2.5.1 BCBC-5B-0 14130690 P216248 Rab27b Enhancer P216248 Enhancer Unique Tile chr18:70176609-70177535 (-) NM_030554 - 1129 70178664 80718 Rab27b 2310021G14Rik RAB27b, member RAS oncogene family MGI:1931295 Mm.100092; Mm.246753; Mm.100092; Mm.246753; Mm.100092; Mm.246753; Mm.100092; Mm.246753; Mm.100092; Mm.246753; Mm.100092; Mm.246753; Mm.100092; Mm.246753; Mm.100092; Mm.246753; Mm.100092; Mm.246753; Mm.100092; Mm.246753; Mm.100092; Mm.246753; Mm.100092; Mm.246753 18 18 E2|18 45.0 cM RAB27B 5874 0 CAGAAAGGACTCCGGGATTTTAT CACGTCATGCATTACAGAACCTC 2 1 6 1.1.1.2.6.1 BCBC-5B-0 14130709 P216998 Tspan14 Enhancer P216998 Enhancer Unique Tile chr14:39874428-39876400 (-) NM_145928 - 875 39875525 52588 Tspan14 AA958793|D14Ertd226e|MGC36554|Tm4sf14 tetraspanin 14 MGI:1196325 Mm.28876 14 14 B|14 14.5 cM TSPAN14 81619 NM_027464 - 46079 39922479 70564 5730469M10Rik 1 TCAGCATAAAGGTGATGAGCAAA TTTGAGAGAAAGGGTGTCTCCAG 2 1 7 1.1.1.2.7.1 BCBC-5B-0 14130728 P217838 Rtn4 Enhancer P217838 Enhancer Unique Tile chr11:29593774-29594791 (+) NM_024226;NM_194053;NM_194051;NM_194054;NM_194052; + 1 29593773 68585 Rtn4 1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|KIAA4153|NOGO|NSP-CL|mKIAA0886|mKIAA4153 reticulon 4 MGI:1915835 Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960; Mm.192580; Mm.426960 11 11 A3.3 RTN4 57142 0 ACCCTAGGGCTTTGTCTACGAGT GCTAGCAAGACACTTTGTCCCAA 2 1 8 1.1.1.2.8.1 BCBC-5B-0 14130747 P218878 Pcgf2 Enhancer P218878 Enhancer Unique Tile chr11:97515351-97516297 (-) NM_009545 - 77 97515428 22658 Pcgf2 Mel18|Rnf110|Zfp144|mel-18 polycomb group ring finger 2 MGI:99161 Mm.2418 11 11 C1-C3|11 58.4 cM PCGF2 7703 NM_011971 + 3226 97519523 26446 Psmb3 1 GGATCACACACGCACTTAGGAAT AGACTCCAAATCGTTAAGAGGGG 2 1 9 1.1.1.2.9.1 BCBC-5B-0 14130766 P219628 Pts Enhancer P219628 Enhancer Unique Tile chr9:50282791-50283695 (-) NM_011220 - 1920 50280871 19286 Pts PTPS 6-pyruvoyl-tetrahydropterin synthase MGI:1338783 Mm.35856 9 9 A5.3 PTS 5805 NM_133217 - 19237 50302932 170752 Bcdo2 0 CTAGACCAGCACCTTGCTCTCTC AACCTCCATGTTTGATCTGAGGA 2 1 10 1.1.1.2.10.1 BCBC-5B-0 14130785 P220750 Ace ProximalPromoter P220750 ProximalPromoter Unique Tile chr11:105782954-105784015 (+) NM_009598;NM_207624; + 33 105784048 11421 Ace AW208573|CD143|MGC117827|somatic angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 MGI:87874 Mm.754 11 11 E1|11 65.0 cM ACE 1636 NM_007805 - 22677 105760277 13056 Cyb561 1 TCCTCCTTTCTCCATCTCTACCC GATTATAAAACCCAGCCACCACC 2 1 11 1.1.1.2.11.1 BCBC-5B-0 14130804 P221590 Sprr2b ProximalPromoter P221590 ProximalPromoter Duplication Tile chr3:92401252-92402187 (+) NM_011469 + 80 92402107 20756 Sprr2b - small proline-rich protein 2B MGI:1330352 Mm.379022 3 3 F1|3 45.2 cM NM_011470 + 22373 92424560 20758 Sprr2d 0 AACACCCAATGAGGTCTGCTAAA AGCAGACCCTCTCAAGAACTCAA 2 1 12 1.1.1.2.12.1 BCBC-5B-0 14130823 P222340 Gale ProximalPromoter P222340 ProximalPromoter Unique Tile chr4:135234759-135235750 (+) NM_178389 + 1490 135237240 74246 Gale 2310002A12Rik|AI323962 galactose-4-epimerase, UDP MGI:1921496 Mm.247946 4 4 D3 GALE 2582 NM_011942 - 8920 135244670 26394 Lypla2 0 TGGTTCATCTTTGGATCTCTTCC GTGTACTGGGTTACTGCCTGGAC 2 1 13 1.1.1.2.13.1 BCBC-5B-0 14130842 P223462 Tac1 Enhancer P223462 Enhancer Unique Tile chr6:7509116-7510034 (+) NM_009311 + 4021 7505095 21333 Tac1 4930528L02Rik|MGC151458|NK-1|NK1|Nkna|PPT-A|SP tachykinin 1 MGI:98474 Mm.1440; Mm.410823; Mm.1440; Mm.410823; Mm.1440; Mm.410823; Mm.1440; Mm.410823; Mm.1440; Mm.410823; Mm.1440; Mm.410823 6 6 A1|6 5.0 cM TAC1 6863 0 TTTGTTGGACTAATGGGCAAAAG TCCTGGGAACTGAATATTCCAAA 2 1 14 1.1.1.2.14.1 BCBC-5B-0 14130861 P224212 Uchl4 ProximalPromoter P224212 ProximalPromoter Unique Tile chr9:64032190-64033091 (+) NM_033607 + 115 64033206 93841 Uchl4 - ubiquitin carboxyl-terminal esterase L4 MGI:1890440 Mm.390180 9 9 C|9 35.0 cM NM_016723 + 146 64033237 50933 Uchl3 0 GTTCTTTGGTTGAATGAGTTGCC AAGCCTTACCATCTTTAGCAGGG 2 1 15 1.1.1.2.15.1 BCBC-5B-0 14130880 P225052 Ankrd39 ProximalPromoter P225052 ProximalPromoter Unique Tile chr1:36491877-36492783 (-) NM_026241 - 100 36491777 109346 Ankrd39 9130416N05Rik|C030004B10Rik ankyrin repeat domain 39 MGI:1914816 Mm.247537 1 1 B ANKRD39 51239 NM_153502 - 11602 36480275 78321 Ankrd23 0 CCTATTGCCACCCAGTCAGTATC AACCAATGAAAGTGGTGAGGTGT 2 1 16 1.1.1.2.16.1 BCBC-5B-0 14130899 P227720 Pdx1 P227720 Pdx1 Unique Tile chrX:67144803-67145773 (+) 0 GATCTTGGAGGCTCAACAACAAT ACTGCTTCAGATTCTCATCTGGG 2 1 17 1.1.1.2.17.1 BCBC-5B-0 14130918 P227126 Pdx1 P227126 Pdx1 Unique Tile chr17:82958705-82959635 (+) 1 TGAGTACCTAGGCCCAGAGGAAG GACGGTGTTGCTAGTCACCTTCT 2 1 18 1.1.1.2.18.1 BCBC-5B-0 14130937 P002344 Stratagene PCR 1 P002344 Spike Control Negative Stratagene PCR 1 2 1 19 1.1.1.2.19.1 BCBC-5B-0 14130956 P003411 Cy3 Anchor P003411 Anchor Control Positive Cy3 Anchor 2 1 20 1.1.1.2.20.1 BCBC-5B-0 14130596 P211640 PufferfishHuman P211640 PufferfishHuman Unique Tile chr12:119164165-119165093 (-) 0 ATCTGGGCCATGATTTACATTTG GTAACCCTTCAGTCCATTTTCCC 2 2 1 1.1.1.2.1.2 BCBC-5B-0 14130615 P212390 miRNA P212390 miRNA Unique Tile chr3:69099692-69100600 (-) mmu-mir-15b 0 CTTTTGCTGCATTTTGCTGACTA TCCAGATCCAGGTTTCACTGTTT 2 2 2 1.1.1.2.2.2 BCBC-5B-0 14130634 P213230 Mt2 Enhancer P213230 Enhancer Unique Tile chr8:97059868-97060854 (+) NM_008630 + 1058 97061912 17750 Mt2 AA409533|MT-II|Mt-2 metallothionein 2 MGI:97172 Mm.147226 8 8 C5|8 45.0 cM MT2A 4502 NM_013602 + 7485 97068339 17748 Mt1 0 ATACCAGGGTGGTGACTTCTTCA AAATTTCTTCCCCTGGAGGTACA 2 2 3 1.1.1.2.3.2 BCBC-5B-0 14130653 P214352 Homer3 Enhancer P214352 Enhancer Unique Tile chr8:73207229-73208126 (+) NM_011984 + 3912 73212038 26558 Homer3 AW146114 homer homolog 3 (Drosophila) MGI:1347359 Mm.284505 8 8 C1 HOMER3 9454 NM_001024922 - 23315 73231441 234374 Ddx49 1 GCAGTAGGAGCTGGGGCTAGT GGTAGCTTTGCTCATGCTCCTTA 2 2 4 1.1.1.2.4.2 BCBC-5B-0 14130672 P215102 Mcam Enhancer P215102 Enhancer Unique Tile chr9:43885980-43886996 (+) NM_023061 + 315 43885665 84004 Mcam 1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin melanoma cell adhesion molecule MGI:1933966 Mm.275003 9 9 A5.1 MCAM 4162 NM_153762 - 21883 43864097 213211 Rnf26 1 GGTGTGCAGCCTAGGTTTTAGAG AAGACCCCATCCAAGTCTAGAGG 2 2 5 1.1.1.2.5.2 BCBC-5B-0 14130691 P216224 Zfp661 Enhancer P216224 Enhancer Unique Tile chr2:127275648-127276564 (+) NM_028141 - 454 127276110 72180 Zfp661 2810405K07Rik|A1-5 zinc finger protein 661 MGI:1919430 Mm.46715 2 2 F1 ZNF2 7549 NM_029963 + 2302 127278866 77721 Mrps5 0 TTTTCTTCACCTCAAATCCGGTA GGCTGGTATCCTCTGAAGCAGTA 2 2 6 1.1.1.2.6.2 BCBC-5B-0 14130710 P217064 Jak1 Enhancer P217064 Enhancer Unique Tile chr4:100761811-100762710 (-) NM_146145 - 455 100763165 16451 Jak1 AA960307|C130039L05Rik|MGC37919 Janus kinase 1 MGI:96628 Mm.289657 4 4 C6|4 46.3 cM JAK1 3716 0 GTTCACCCCTGGTCAGCTCTT CCACACATGATCTCTCAACTTGG 2 2 7 1.1.1.2.7.2 BCBC-5B-0 14130729 P217814 6330503K22Rik Enhancer P217814 Enhancer Unique Tile chr7:118504161-118505074 (+) NM_182995 + 402 118503759 101565 6330503K22Rik AA415922|AI427129|AW557948 RIKEN cDNA 6330503K22 gene MGI:2141942 Mm.23279 7 7 F2 CP110 9738 NM_019580 - 7274 118496887 56209 Mir16 0 TGTCGGAGGTAGTGTAGGAGGAG GTGCAAGAGGGCACTACATTTCT 2 2 8 1.1.1.2.8.2 BCBC-5B-0 14130748 P218854 Nomo1 Enhancer P218854 Enhancer Unique Tile chr7:45901496-45902544 (-) NM_153057 + 295 45901791 211548 Nomo1 D7Ertd156e|MGC37454|MGC37848|Nomo|pM5 nodal modulator 1 MGI:2385850 Mm.274811 7 7 B3|7 23.2 cM NOMO1 23420 NM_018795 - 3172 45898324 27421 Abcc6 1 CTCTCTCCAATCCCCTGTGTCTA GCTTTTTGAAATTACATCTGGCG 2 2 9 1.1.1.2.9.2 BCBC-5B-0 14130767 P219604 Unc84b ProximalPromoter P219604 ProximalPromoter Unique Tile chr15:79569875-79570840 (-) NM_194342 - 90 79569785 223697 Unc84b AI551766|B230369L08Rik|C030011B15|SUN2 unc-84 homolog B (C. elegans) MGI:2443011 Mm.202715 15 15 E1 UNC84B 25777 NM_017470 - 30811 79601651 54152 Dnalc4 1 GGAACTCACTCTGTAGACCAGGC GGTTGATTTGAACACAAAGGCTC 2 2 10 1.1.1.2.10.2 BCBC-5B-0 14130786 P220444 S100a5 ProximalPromoter P220444 ProximalPromoter Unique Tile chr3:90693535-90694459 (+) NM_011312 + 11 90694448 20199 S100a5 S100D9 S100 calcium binding protein A5 MGI:1338915 Mm.19946 3 3 F1-F2|3 43.6 cM S100A5 6276 NM_011311 + 2599 90690936 20198 S100a4 0 CTCTCTTTGCACTCCCAGTCAAT CAAGGAAGAAGTGAACCTGGAGA 2 2 11 1.1.1.2.11.2 BCBC-5B-0 14130805 P221566 Adamts2 ProximalPromoter P221566 ProximalPromoter Unique Tile chr11:50444694-50445650 (+) NM_175643 + 132 50445518 216725 Adamts2 4732482M10|A430089F14|ADAM-TS2|ADAMTS-3|KIAA4060|PCINP|hPCPNI|mKIAA4060 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 2 MGI:1347356 Mm.110597; Mm.339048; Mm.110597; Mm.339048; Mm.110597; Mm.339048; Mm.110597; Mm.339048; Mm.110597; Mm.339048; Mm.110597; Mm.339048; Mm.110597; Mm.339048; Mm.110597; Mm.339048 11 11 B1.3 ADAMTS2 9509 0 GTTCAGGACTGTTTCTGGTGGAC GCAGCAGCAGCAGCAGTAGAG 2 2 12 1.1.1.2.12.2 BCBC-5B-0 14130824 P222316 Ngp Enhancer P222316 Enhancer Unique Tile chr9:110260092-110261049 (+) NM_008694 + 3966 110265015 18054 Ngp bectenecin neutrophilic granule protein MGI:105983 Mm.236225 9 9 F2 0 ATGGAAGAAAACAACAGGGGAAT TCAGTGGTGTCTGCAGGTTTCTA 2 2 13 1.1.1.2.13.2 BCBC-5B-0 14130843 P223438 Rrad Enhancer P223438 Enhancer Unique Tile chr8:107517011-107517913 (-) NM_019662 - 2129 107520042 56437 Rrad REM3|Rad Ras-related associated with diabetes MGI:1930943 Mm.29467 8 8 D3 RRAD 6236 NM_007663 - 3621 107513390 12556 Cdh16 0 GTTTGAGTTTGCATTCTCCCATC TAGGCTTCCTGTCTGTTCTGTCC 2 2 14 1.1.1.2.14.2 BCBC-5B-0 14130862 P224278 Klra8 ProximalPromoter P224278 ProximalPromoter Unique Tile chr6:130093834-130094867 (-) NM_010650 - 19 130093853 16639 Klra8 Cmv-1|Cmv1|Ly49h|Ly49u<129> killer cell lectin-like receptor, subfamily A, member 8 MGI:102968 Mm.333431 6 6 F3|6 62.69 cM NM_053151 - 685 130095552 93968 Klra21 0 TGTGAGGGTAATGCCAGTTACAA GTGACCTCCTGCTCACTCATCTT 2 2 15 1.1.1.2.15.2 BCBC-5B-0 14130881 P225028 3321401G04Rik ProximalPromoter P225028 ProximalPromoter Unique Tile chr6:42622795-42623707 (-) NM_029930 - 101 42622694 77574 3321401G04Rik A230020K05Rik|AI848529|KIAA0738 RIKEN cDNA 3321401G04 gene MGI:1914665 Mm.24652 6 6 B2 KIAA0738 9747 NM_146174 - 48134 42574661 232748 BC011487 0 CCTACTTGGATTCAAAGGCACAC GACAAGGCATTGAGGTGGATTAG 2 2 16 1.1.1.2.16.2 BCBC-5B-0 14130900 P227696 Oas1c Pdx1 P227696 Pdx1 Unique Tile chr5:121072813-121073780 (+) NM_033541 - 318 121073131 114643 Oas1c MGC124107|Oasl2|Oasl5 2'-5' oligoadenylate synthetase 1C MGI:2149633 Mm.43230 5 5 F|5 67.0 cM NM_011853 + 438 121073251 23961 Oas1b 0 TCTGGGAAGTCTGAGCTTTCTGT CAAAGGTTGTATTACCACTGCCC 2 2 17 1.1.1.2.17.2 BCBC-5B-0 14130919 P227102 Gpbar1 Pdx1 P227102 Pdx1 Unique Tile chr1:74200614-74201543 (+) NM_174985 + 10213 74211756 227289 Gpbar1 BG37|GPCR|GPR131|M-BAR|TGR5 G protein-coupled bile acid receptor 1 MGI:2653863 Mm.246587 1 1 C3|1 40.4 cM GPBAR1 151306 NM_146110 - 15633 74217176 227290 Aamp 0 TGAAAGCTAGAGGAAAGTGGGTG CACAGTTTACATACCAGCCCCTC 2 2 18 1.1.1.2.18.2 BCBC-5B-0 14130938 P227366 Pdx1 P227366 Pdx1 Unique Tile chr6:51542373-51543314 (+) 1 GCAGTCATTTTTATATGCGGAGG GGAAGAGTGGGTGGTACAATCAG 2 2 19 1.1.1.2.19.2 BCBC-5B-0 14130957 P003363 Cy3 Anchor P003363 Anchor Control Positive Cy3 Anchor 2 2 20 1.1.1.2.20.2 BCBC-5B-0 14130597 P211616 PufferfishHuman P211616 PufferfishHuman Unique Tile chr5:101843213-101844127 (-) 0 CTGACCCTCAGGTAAGCAACTGT AGGAAGAAACATGAGCCACAGAC 2 3 1 1.1.1.2.1.3 BCBC-5B-0 14130616 P212456 miRNA P212456 miRNA Unique Tile chr9:108430248-108431266 (-) mmu-mir-191 0 CAAGATCCTAAGTCCCAAGCTCA CAAGGCTTGGACTTGTCTTCCTA 2 3 2 1.1.1.2.2.3 BCBC-5B-0 14130635 P213206 Mcm3 Enhancer P213206 Enhancer Unique Tile chr1:20806585-20807544 (-) NM_008563 - 1221 20805364 17215 Mcm3 AL033361|C80350|Mcmd|P1|p1.m minichromosome maintenance deficient 3 (S. cerevisiae) MGI:101845 Mm.4502 1 1 A3-A5 MCM3 4172 NM_145856 - 41922 20764663 257630 Il17f 0 AGTGAAGAAATTGCACCTCTTGC CAAGTGATTGCTGGGGCTATAAG 2 3 3 1.1.1.2.3.3 BCBC-5B-0 14130654 P214328 Clcn7 Enhancer P214328 Enhancer Unique Tile chr17:24863878-24864846 (+) NM_011930 + 2857 24861021 26373 Clcn7 AA409691|AW538136|ClC-7|D17Wsu51e chloride channel 7 MGI:1347048 Mm.270587 17 17 A3.3|17 10.0 cM CLCN7 1186 NM_027880 - 20503 24843375 71718 1200003M09Rik 0 CATGAGCTAGTCTGCAGTCAGGA GCTCCTTGCTAAACACCAAAGAA 2 3 4 1.1.1.2.4.3 BCBC-5B-0 14130673 P215078 Myh9 Enhancer P215078 Enhancer Unique Tile chr15:77668042-77668906 (-) NM_022410;NM_181327; - 448 77669354 17886 Myh9 C80049|D0Jmb2|E030044M24Rik|Myhn-1|Myhn1|NMHC II-A|TU-72.6 myosin, heavy polypeptide 9, non-muscle MGI:107717 Mm.29677 15 15 E1|15 43.3 cM MYH9 4627 0 GGCAAACTTTTTAACCCCTTCC AAAACCGCTCAGAGAACTGAGAA 2 3 5 1.1.1.2.5.3 BCBC-5B-0 14130692 P215918 Enhancer P215918 Enhancer No Hits Tile 0 aagggaaggccacaagtagtgtt ttagaaggggaaagcaaaggaac 2 3 6 1.1.1.2.6.3 BCBC-5B-0 14130711 P217040 Sfrs7 Enhancer P217040 Enhancer Unique Tile chr17:80108227-80109317 (-) NM_146083 - 6294 80115611 225027 Sfrs7 35kDa|9430065L19Rik|9G8|MGC38287|NX-96 splicing factor, arginine/serine-rich 7 MGI:1926232 Mm.292016 17 17 E3 SFRS7 6432 NM_026053 + 23497 80132814 67242 Gemin6 0 CCTACAAATTGGTGCATGACAGA TCTGACTGACTACACAGCCCAAG 2 3 7 1.1.1.2.7.3 BCBC-5B-0 14130730 P217790 0710001B24Rik Enhancer P217790 Enhancer Unique Tile chr1:94737252-94738163 (+) NM_175118 + 142 94737394 67446 0710001B24Rik AV005521 RIKEN cDNA 0710001B24 gene MGI:1914696 Mm.46179 1 1 D LOC285193 285193 NM_181405 + 3647 94741810 108657 Rnpepl1 1 CAAAGAGGCTAGTCACCCGTCTA TAGAAAAAGGAGGGAAGGGACAC 2 3 8 1.1.1.2.8.3 BCBC-5B-0 14130749 P218830 Nif3l1 Enhancer P218830 Enhancer Unique Tile chr1:58391893-58392920 (-) NM_022988 + 285 58392178 65102 Nif3l1 1110030G24Rik|MGC107114 Ngg1 interacting factor 3-like 1 (S. pombe) MGI:1929485 Mm.340248 1 1 C NIF3L1 60491 NM_027351;NM_027374; - 1861 58390032 70225 Ppil3 0 CCAGCTCTAGTGGACCTGACACT TGCAGCAGAGATACAGGGTGTAA 2 3 9 1.1.1.2.9.3 BCBC-5B-0 14130768 P219670 Il22ra2 ProximalPromoter P219670 ProximalPromoter Unique Tile chr10:19310294-19311402 (+) NM_178258 + 41 19311443 237310 Il22ra2 CRF2-10|CRF2-s1|CRF2X|Il-22bp interleukin 22 receptor, alpha 2 MGI:2665114 Mm.331979 10 10 A3 IL22RA2 116379 NM_177792 + 22763 19334165 327728 9230106D20Rik 0 ACCTTCATGTGGGTCCTGAACTA TGAGAAGGGGAACTAAATCCACA 2 3 10 1.1.1.2.10.3 BCBC-5B-0 14130787 P220420 Pax7 ProximalPromoter P220420 ProximalPromoter Unique Tile chr4:139105025-139105959 (-) NM_011039 - 19 139105044 18509 Pax7 Pax-7 paired box gene 7 MGI:97491 Mm.218760 4 4 E1|4 69.0 cM PAX7 5081 1 AAGAAGTTACCCTCTCCCTCCCT ATAAACCTCTTGGCGTCTCTTCC 2 3 11 1.1.1.2.11.3 BCBC-5B-0 14130806 P221542 Nt5c Enhancer P221542 Enhancer Unique Tile chr11:115306612-115307549 (-) NM_015807 - 355 115307904 50773 Nt5c Dnt|Dnt1|Umph-2|Umph2 5',3'-nucleotidase, cytosolic MGI:1354954 Mm.390379 11 11 E NT5C 30833 NM_177778 + 14846 115291766 276905 Armc7 0 TCCTGCAGAATCTTTGTGTGTGT AAAGCAGTCTGTTCAAGTGGCTC 2 3 12 1.1.1.2.12.3 BCBC-5B-0 14130825 P222292 Egfl6 Enhancer P222292 Enhancer End Repeat Tile chrX:161927699-161928636 (-) NM_019397 - 1171 161929807 54156 Egfl6 MGC141463|Maeg EGF-like-domain, multiple 6 MGI:1858599 Mm.37707 X X F5|X 71.5 cM EGFL6 25975 1 CACACACACACACACACACACAC ATTTGCAAGCATATGGAGTGGAT 2 3 13 1.1.1.2.13.3 BCBC-5B-0 14130844 P223132 E430004N04Rik ProximalPromoter P223132 ProximalPromoter Unique Tile chr10:28356765-28357815 (+) NM_178666 + 5 28357810 210757 E430004N04Rik A430108D01|BB160712 RIKEN cDNA E430004N04 gene MGI:2443552 Mm.123021 10 10 A4 C6orf190 387357 2 TAAGACAGAGGCAAGGAGGACTG TAGGCAGGAGACAGTGGGTAAAG 2 3 14 1.1.1.2.14.3 BCBC-5B-0 14130863 P224254 Zfp108 Enhancer P224254 Enhancer End Repeat Tile chr7:23963689-23964701 (+) NM_018791 + 110 23963799 54678 Zfp108 - zinc finger protein 108 MGI:1891198 Mm.103750 7 7 A3 NM_009567 + 14476 23979177 22755 Zfp93 0 CCTCTCAGAGACGAGTTTGCATT CCTGTTTTCAATCCCTACCACTG 2 3 15 1.1.1.2.15.3 BCBC-5B-0 14130882 P225004 Samd7 ProximalPromoter P225004 ProximalPromoter Unique Tile chr3:30936031-30937037 (+) NM_029489 + 93 30937130 75953 Samd7 4930597A01Rik sterile alpha motif domain containing 7 MGI:1923203 Mm.308084 3 3 A3 SAMD7 344658 NM_027016 + 46676 30983713 69276 Tloc1 0 GAGAGGAAAGAGAGGCAACACAA AGGGGACACATAAACCTGTCTCA 2 3 16 1.1.1.2.16.3 BCBC-5B-0 14130901 P227672 Mad1l1 Pdx1 P227672 Pdx1 Unique Tile chr5:140542181-140543146 (+) NM_010752 - 30878 140574024 17120 Mad1l1 AI173502|AW550425|Mad1 mitotic arrest deficient 1-like 1 MGI:1341857 Mm.27250 5 5 G2|5 81.0 cM MAD1L1 8379 NM_026510 - 41194 140584340 68017 Ftsj2 0 TCTTTGGAATTTGGTGACAACCT CTAGGGATGAGGCATGTGTTCTC 2 3 17 1.1.1.2.17.3 BCBC-5B-0 14130920 P227168 Cxcl12 Pdx1 P227168 Pdx1 Unique Tile chr6:117084501-117085432 (+) NM_001012477;NM_021704;NM_013655; + 48749 117134181 20315 Cxcl12 AI174028|PBSF|PBSF/SDF-1|SDF-1|Scyb12|Sdf1|Sdf1a|Sdf1b|TLSF|TLSF-a|TLSF-b|TPAR1 chemokine (C-X-C motif) ligand 12 MGI:103556 Mm.303231 6 6 F1|6 53.0 cM CXCL12 6387 0 TGTTTTGGACTGTGGTGTTCACT AGGGACATGAGGACCAATCACT 2 3 18 1.1.1.2.18.3 BCBC-5B-0 14130939 P227342 Pdx1 P227342 Pdx1 Unique Tile chr7:78234686-78235626 (+) 0 AAGAAGGGAAACCACAACAAACA CTGCACACACATACACTGCACAT 2 3 19 1.1.1.2.19.3 BCBC-5B-0 14130958 P003207 Blank P003207 Buffer Control Negative Blank 2 3 20 1.1.1.2.20.3 BCBC-5B-0 14130598 P211310 Foxp1 PufferfishHuman P211310 PufferfishHuman Unique Tile chr6:99132798-99133736 (+) NM_053202 - 4317 99128481 108655 Foxp1 3110052D19Rik|4932443N09Rik|AI461938|AW494214 forkhead box P1 MGI:1914004 Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795 6 6 E1 FOXP1 27086 2 CTTACCCAAGCCTTTCCTCAGTT AGAGAGGGAGAGCAAGAGACACA 2 4 1 1.1.1.2.1.4 BCBC-5B-0 14130617 P212432 miRNA P212432 miRNA Unique Tile chrX:6402871-6403774 (+) mmu-mir-188 1 AGAAGATGGAAGATTTGGGCTTC TCAGTTTCCAGTGGAGCCTTTAG 2 4 2 1.1.1.2.2.4 BCBC-5B-0 14130636 P213182 Rnf151 Enhancer P213182 Enhancer Unique Tile chr17:24443766-24444863 (+) NM_026205 - 794 24445657 67504 Rnf151 1700010O16Rik|AV047371 ring finger protein 151 MGI:1914754 Mm.46159 17 17 A3.3 RNF151 146310 NM_008503 + 2845 24447708 16898 Rps2 0 AACAGAGAAGGCAAGGAGGACTT TTATGCCTCCAGACAGAAAGGAG 2 4 3 1.1.1.2.3.4 BCBC-5B-0 14130655 P214304 4733401H18Rik Enhancer P214304 Enhancer Unique Tile chr9:108421916-108422857 (+) NM_023247 - 2588 108425445 66706 4733401H18Rik - RIKEN cDNA 4733401H18 gene MGI:1913956 Mm.29471 9 9 F2 C3orf60 25915 NM_011830 + 3313 108418603 23918 Impdh2 0 CAAGTTCTTGTCATCCCTCACCT CTTTGGCAATATGACCCACATTT 2 4 4 1.1.1.2.4.4 BCBC-5B-0 14130674 P215144 Yipf5 Enhancer P215144 Enhancer Unique Tile chr18:40344125-40345070 (-) NM_023311 - 232 40345302 67180 Yipf5 2610311I19Rik|AA408236|Yip1a Yip1 domain family, member 5 MGI:1914430 Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549; Mm.270382; Mm.429549 18 18 B3 YIPF5 81555 0 GGCCCCTCGTTTATATTTAGCTG TCAAACTACCCCAAACACCAGAT 2 4 5 1.1.1.2.5.4 BCBC-5B-0 14130693 P215894 Rnf41 Enhancer P215894 Enhancer Unique Tile chr10:127814166-127815084 (-) NM_026259 + 439 127814605 67588 Rnf41 2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF ring finger protein 41 MGI:1914838 Mm.294120 10 10 D3|10 72.0 cM NM_027257 - 1421 127812745 69917 Obfc2b 2 GCCATTTAAACTCCATGTTGTCC TCCTAAGTTAACAGCAGCATCCA 2 4 6 1.1.1.2.6.4 BCBC-5B-0 14130712 P217016 Tspan8 Enhancer P217016 Enhancer Unique Tile chr10:115224873-115225841 (+) NM_146010 + 3253 115221620 216350 Tspan8 C76990|E330007O21Rik|MGC38363|Tm4sf3 tetraspanin 8 MGI:2384918 Mm.22270 10 10 D2 TSPAN8 7103 0 TCTGAAAACACACCAACCAGAAA GTTTGCAGCAATCTCCCTAACAT 2 4 7 1.1.1.2.7.4 BCBC-5B-0 14130731 P217766 Ankra2 Enhancer P217766 Enhancer Unique Tile chr13:99366074-99366975 (-) NM_023472 + 295 99366369 68558 Ankra2 1110004M18Rik|AI450635|AU023827|Ankra|MGC90650 ankyrin repeat, family A (RFXANK-like), 2 MGI:1915808 Mm.209642 13 13 D1 ANKRA2 57763 NM_178918 - 2925 99363149 105372 Utp15 0 CATGGTCTGGAACTCACTAAGCC GCATCCCTTTTTACACAGGACAC 2 4 8 1.1.1.2.8.4 BCBC-5B-0 14130750 P218524 Gimap1 ProximalPromoter P218524 ProximalPromoter Unique Tile chr6:48667671-48668649 (+) NM_008376;NM_175860; + 17 48668632 16205 Gimap1 IAP38|Imap38|imap GTPase, IMAP family member 1 MGI:109368 Mm.252599 6 6 B2.3 GIMAP1 170575 NM_175035 + 7133 48675782 317757 Gimap5 0 CCGTCTTCTTTCCTTCCTCTCTC TGAGCATAGAGGAAGTCGCTAGG 2 4 9 1.1.1.2.9.4 BCBC-5B-0 14130769 P219646 Tmem16g ProximalPromoter P219646 ProximalPromoter Unique Tile chr1:95203352-95204265 (+) NM_207031 + 36 95204301 404545 Tmem16g IPCA-5|NGEP|NGEP-L|Pcanap5 transmembrane protein 16g MGI:3052714 Mm.297411 1 1 D TMEM16G 50636 NM_023200 + 29302 95174050 66385 Ppp1r7 0 GGCAAAGAAGTGACTCTTCCAGA TACTAAGTGCAGTCAGCCACCAG 2 4 10 1.1.1.2.10.4 BCBC-5B-0 14130788 P220396 Ccnh Enhancer P220396 Enhancer Unique Tile chr13:85662984-85663903 (+) NM_023243 + 377 85662607 66671 Ccnh 6330408H09Rik|AI661354|AV102684|AW538719 cyclin H MGI:1913921 Mm.18474 13 13 C3 CCNH 902 0 GACTCGAACTGGTCACTTGTCCT CTTCATGAGGCTCCAGAAACACT 2 4 11 1.1.1.2.11.4 BCBC-5B-0 14130807 P221518 Fhad1 ProximalPromoter P221518 ProximalPromoter Unique Tile chr4:141205217-141206240 (-) NM_028429 - 10715 141194502 329977 Fhad1 2900090M10Rik|B230311F11 forkhead-associated (FHA) phosphopeptide binding domain 1 MGI:1920323 Mm.252019; Mm.387697; Mm.252019; Mm.387697; Mm.252019; Mm.387697; Mm.252019; Mm.387697; Mm.252019; Mm.387697; Mm.252019; Mm.387697 4 4 E1 FHAD1 114827 0 CAATGTCAGCATACTTGCTCCAC GAACTGCTTGCCTTCTTCTGGTA 2 4 12 1.1.1.2.12.4 BCBC-5B-0 14130826 P222358 Mapk3 ProximalPromoter P222358 ProximalPromoter Unique Tile chr7:126549276-126549998 (+) NM_011952 + 775 126550773 26417 Mapk3 Erk-1|Erk1|Esrk1|Prkm3|p44|p44erk1|p44mapk mitogen activated protein kinase 3 MGI:1346859 Mm.8385 7 7 F3|7 61.0 cM MAPK3 5595 NM_024228 + 7563 126557561 68616 Gdpd3 0 AAGAACACATACCGCTCTTCCAG CTGTCAGACTTGGTAGGAGTGGG 2 4 13 1.1.1.2.13.4 BCBC-5B-0 14130845 P223108 Ptk6 Enhancer P223108 Enhancer Unique Tile chr2:181135564-181136634 (-) NM_009184 - 3368 181132196 20459 Ptk6 BRK|Sik|Tksk|tks PTK6 protein tyrosine kinase 6 MGI:99683 Mm.4497 2 2 H4|2 110.0 cM PTK6 5753 NM_011481 - 5944 181142578 20811 Srms 0 TTATTCATTGTTGACTGGGCCTT CTAGCTGCTACTGAGGGTCTGGA 2 4 14 1.1.1.2.14.4 BCBC-5B-0 14130864 P224230 Fbxl12 ProximalPromoter P224230 ProximalPromoter Unique Tile chr9:20395272-20396173 (-) NM_001002846;NM_013911; - 103 20395169 30843 Fbxl12 3110048D16Rik|Fbl12 F-box and leucine-rich repeat protein 12 MGI:1354738 Mm.24608 9 9 A3 FBXL12 54850 NM_025401 + 23 20395249 66177 Ubl5 2 GACAGCCAGGGCTATACAGAGAA TCGATAGGTTCGAGGATATTGGA 2 4 15 1.1.1.2.15.4 BCBC-5B-0 14130883 P224980 Fut11 ProximalPromoter P224980 ProximalPromoter Unique Tile chr14:19482473-19483422 (+) NM_028428 + 100 19483522 73068 Fut11 3110009G03Rik|AI317183 fucosyltransferase 11 MGI:1920318 Mm.277552 14 14 B FUT11 170384 NM_025366 + 8177 19491599 66121 Chchd1 0 AGGGCGAGATATAAGGAGACACC CGCGAGTAATGAGAGGGATACTG 2 4 16 1.1.1.2.16.4 BCBC-5B-0 14130902 P225820 Rtp1 ProximalPromoter P225820 ProximalPromoter Unique Tile chr16:23343646-23344567 (+) NM_001004151 + 101 23344466 239766 Rtp1 Gm1766|Gm604 receptor transporter protein 1 MGI:2685450 Mm.208751 16 16 B1 RTP1 132112 0 TCCAATGCTCTGAATCAAAGTGA AAGAGGGTAAGTGTAAGGCAGGG 2 4 17 1.1.1.2.17.4 BCBC-5B-0 14130921 P227144 Mid1ip1 Pdx1 P227144 Pdx1 Unique Tile chrX:9871384-9872314 (+) NM_026524 + 2138 9874452 68041 Mid1ip1 3110038L01Rik|Mig12 Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish)) MGI:1915291 Mm.29429 X X A1.2 MID1IP1 58526 0 CAGTCAAGCATCACTTCCTGGTT TCTCTAACAGCTCCCAGAAAACG 2 4 18 1.1.1.2.18.4 BCBC-5B-0 14130940 P227318 Pdx1 P227318 Pdx1 Unique Tile chr3:34371864-34372803 (+) 0 AGAACAAGAAGCCATCAGTGCAT ACGCACTTCTTCAGTAACCCTTG 2 4 19 1.1.1.2.19.4 BCBC-5B-0 14130959 P003207 Blank P003207 Buffer Control Negative Blank 2 4 20 1.1.1.2.20.4 BCBC-5B-0 14130599 P211286 PufferfishHuman P211286 PufferfishHuman Unique Tile chr9:99940139-99941179 (-) 0 AACCTTTACCCTCAAGCTCCATC GGGGTCAGTTCAGGCTTTCTAAT 2 5 1 1.1.1.2.1.5 BCBC-5B-0 14130618 P212408 miRNA P212408 miRNA Unique Tile chr2:38678570-38679478 (-) mmu-mir-181a 0 TCACATAACCTTCCCCTTCCATA CACAGAAAATTAAAGCACAGGGA 2 5 2 1.1.1.2.2.5 BCBC-5B-0 14130637 P213158 Itm2b Enhancer P213158 Enhancer Unique Tile chr14:72118082-72119031 (-) NM_008410 - 366 72119397 16432 Itm2b AI256040|D14Sel6|E25BMM integral membrane protein 2B MGI:1309517 Mm.4266 14 14 D2|14 32.5 cM ITM2B 9445 0 ACAGTTGCACAGGTGTACGAGGT GATGTTTGCTTTTAGCTGGAACG 2 5 3 1.1.1.2.3.5 BCBC-5B-0 14130656 P213998 Nck2 Enhancer P213998 Enhancer Unique Tile chr1:43390741-43391686 (+) NM_010879 + 185 43390556 17974 Nck2 Grb4|NCKbeta non-catalytic region of tyrosine kinase adaptor protein 2 MGI:1306821 Mm.233951 1 1 C1 NCK2 8440 2 GATACACACACCTTCCTGCGAG AGAAAAGCCTGTATTGGGAGAGG 2 5 4 1.1.1.2.4.5 BCBC-5B-0 14130675 P215120 Cndp2 Enhancer P215120 Enhancer Unique Tile chr18:84818726-84819636 (-) NM_023149 - 190 84819826 66054 Cndp2 0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1 CNDP dipeptidase 2 (metallopeptidase M20 family) MGI:1913304 Mm.29646 18 18 E3 CNDP2 55748 NM_177450 - 34449 84784277 338403 Cndp1 2 ATCCTTAATGCAGTCAGCCCAG CGTGGCGCAGCTAAACTAACTT 2 5 5 1.1.1.2.5.5 BCBC-5B-0 14130694 P215870 Esam1 Enhancer P215870 Enhancer Unique Tile chr9:37272987-37273889 (+) NM_027102 + 3890 37277779 69524 Esam1 2310008D05Rik|Esam|W117m endothelial cell-specific adhesion molecule MGI:1916774 Mm.41751 9 9 B ESAM 90952 NM_146222 + 6038 37266949 235184 BC024479 0 TGCAGCAGTGCTTGTTTTTACAT CTCCGCTACAAAAGGCTCAACTA 2 5 6 1.1.1.2.6.5 BCBC-5B-0 14130713 P216992 Adck1 Enhancer P216992 Enhancer Unique Tile chr12:88872047-88873145 (-) NM_028105 + 910 88874055 72113 Adck1 2610005A10Rik aarF domain containing kinase 1 MGI:1919363 Mm.181387 12 12 E ADCK1 57143 NM_145851 - 3922 88868125 252966 Cables2 0 CAGTCTAGAACTCGATGAGGGGA TATGAAGATAGAGGGGATTGCCA 2 5 7 1.1.1.2.7.5 BCBC-5B-0 14130732 P217832 Pon2 Enhancer P217832 Enhancer Unique Tile chr6:5247131-5248100 (-) NM_183308 - 204 5248304 330260 Pon2 6330405I24Rik|AI481612|MGC68232 paraoxonase 2 MGI:106687 Mm.126984; Mm.400258; Mm.126984; Mm.400258; Mm.126984; Mm.400258; Mm.126984; Mm.400258; Mm.126984; Mm.400258; Mm.126984; Mm.400258; Mm.126984; Mm.400258; Mm.126984; Mm.400258; Mm.126984; Mm.400258; Mm.126984; Mm.400258; Mm.126984; Mm.400258; Mm.126984; Mm.400258; Mm.126984; Mm.400258; Mm.126984; Mm.400258; Mm.126984; Mm.400258; Mm.126984; Mm.400258; Mm.126984; Mm.400258; Mm.126984; Mm.400258; Mm.126984; Mm.400258; Mm.126984; Mm.400258 6 6 A1 PON2 5445 NM_173006 - 40878 5206253 269823 Pon3 0 GAGAGAGCTTGTTTAGTTCGGGG TCAGGAGACCAAAGAATCCTGAG 2 5 8 1.1.1.2.8.5 BCBC-5B-0 14130751 P218500 Slc17a8 ProximalPromoter P218500 ProximalPromoter Unique Tile chr10:89050902-89051881 (-) NM_182959 - 150 89051052 216227 Slc17a8 BC042593|Vglut3 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8 MGI:3039629 Mm.233921 10 10 C2 SLC17A8 246213 0 GAAGCCTGTAATGTGGAAGCAAG TCTCCTCTCGATCCAGAATCAAC 2 5 9 1.1.1.2.9.5 BCBC-5B-0 14130770 P219622 Man2b2 Enhancer P219622 Enhancer Unique Tile chr5:37117595-37118502 (-) NM_008550 - 347 37118849 17160 Man2b2 mKIAA0935 mannosidase 2, alpha B2 MGI:1195262 Mm.761 5 5 B2 MAN2B2 23324 NM_026242 - 32623 37084972 67568 Mrfap1 0 TCTTATTAGACGGTCCCTGCAAA GATTAAGCACCAATTCCTGTTGC 2 5 10 1.1.1.2.10.5 BCBC-5B-0 14130789 P220372 Adss Enhancer P220372 Enhancer unhandled condition Tile chr1:179597306-179598311 (+) NM_007422 - 34873 179633184 11566 Adss AI314886|AS|Adss2 adenylosuccinate synthetase, non muscle MGI:87948 Mm.338021 1 1 H4 ADSS 159 2 GACACAAACATCTTGAGTGCTGC AGGGTTTCTCTGTATAGCCCTGG 2 5 11 1.1.1.2.11.5 BCBC-5B-0 14130808 P221212 Mcoln2 Enhancer P221212 Enhancer Unique Tile chr3:146087528-146088433 (+) NM_026656;NM_001005846; + 31 146087559 68279 Mcoln2 3300002C04Rik|AI549968|C86638|TRPML2 mucolipin 2 MGI:1915529 Mm.116862 3 3 H2 MCOLN2 255231 NM_134160 + 28352 146059176 171166 Mcoln3 0 ACGTAGCAAAAGTCCTTCGTGAC CTGAGAAGTCTATGCCACCCTTG 2 5 12 1.1.1.2.12.5 BCBC-5B-0 14130827 P222334 Olfr978 ProximalPromoter P222334 ProximalPromoter Unique Tile chr9:39743314-39744297 (+) NM_147105 + 85 39744382 259109 Olfr978 MOR223-3 olfactory receptor 978 MGI:3030812 Mm.377851 9 - NM_147108 - 7499 39751796 259112 Olfr979 0 CTTCCACACAGGAAAAGACTGCT ACACCACAGTCCAAAGGAATTGT 2 5 13 1.1.1.2.13.5 BCBC-5B-0 14130846 P223084 1810042K04Rik Enhancer P223084 Enhancer Unique Tile chr5:140074446-140075399 (-) NM_025604 - 3902 140079301 66506 1810042K04Rik 4930403H09Rik|AI303239 RIKEN cDNA 1810042K04 gene MGI:1913756 Mm.29070 5 5 G2 MGC10911 84262 NM_144914 - 7730 140066716 231832 BC019731 0 TGTGTACTGAGTCCTGTTCCCCT GCATTCCTGAGCATTATTAACCG 2 5 14 1.1.1.2.14.5 BCBC-5B-0 14130865 P224206 Krtap5-2 Enhancer P224206 Enhancer Unique Tile chr7:141987392-141988308 (-) NM_027844 - 1997 141985395 71623 Krtap5-2 4833428E21Rik keratin associated protein 5-2 MGI:1918873 Mm.293700 7 7 F5 0 GTACTCACAGAAAAGGGTGTGGG CAAGAGACCACAGTCAAACAGGA 2 5 15 1.1.1.2.15.5 BCBC-5B-0 14130884 P225046 Olfr735 ProximalPromoter P225046 ProximalPromoter End Repeat Tile chr14:49268490-49269428 (-) NM_001011754 - 99 49268391 257909 Olfr735 MOR243-1 olfactory receptor 735 MGI:3030569 Mm.318718 14 14 C1 OR4Q3 441669 NM_205819 + 13024 49282452 239081 Tlr11 1 CTCTGTCCCTTTTCATTCTTGGA ACACACACACACACACACACACA 2 5 16 1.1.1.2.16.5 BCBC-5B-0 14130903 P225796 Ecm2 ProximalPromoter P225796 ProximalPromoter Unique Tile chr13:49515902-49516801 (+) NM_001012324 + 55 49516746 407800 Ecm2 9030618O22Rik|BC065151|MGC107322 extracellular matrix protein 2, female organ and adipocyte specific MGI:3039578 Mm.386931 13 13 B1 ECM2 1842 NM_025711 + 39676 49556477 66695 Aspn 0 GTCATCTCACCTGGTTCTTCCAC AGAACTGCTTCCCTTGGGATAAA 2 5 17 1.1.1.2.17.5 BCBC-5B-0 14130922 P227120 Nefl Pdx1 P227120 Pdx1 Unique Tile chr14:67037234-67038164 (+) NM_010910 + 21 67037213 18039 Nefl AI847934|CMT2E|NF-L|NF68|Nfl neurofilament, light polypeptide MGI:97313 Mm.1956 14 14 D3|14 28.7 cM NEFL 4747 NM_008691 - 39979 67078143 18040 Nef3 0 TTCTTCTCTCTAGGTCCCCCATC CTCTCGGTTAGCACGGTGAAG 2 5 18 1.1.1.2.18.5 BCBC-5B-0 14130941 P227294 Mapk4 Pdx1 P227294 Pdx1 Unique Tile chr18:74188703-74189641 (+) NM_172632 - 677 74190318 225724 Mapk4 A330097D03Rik|Erk3|Prkm4|p63Mapk mitogen-activated protein kinase 4 MGI:2444559 Mm.254517 18 18 E2 MAPK4 5596 2 TGAAGAAACAAGGATTGTCCCTC GAGAAAGAGGACCTGGCTGCT 2 5 19 1.1.1.2.19.5 BCBC-5B-0 14130960 P003111 Blank P003111 Buffer Control Negative Blank 2 5 20 1.1.1.2.20.5 BCBC-5B-0 14130600 P211262 PufferfishHuman P211262 PufferfishHuman Unique Tile chr9:71773486-71774386 (+) 0 AGTAAGCACACCAACCTCTCCAG CAATTCTCCTTTGCTGCTTGTTT 2 6 1 1.1.1.2.1.6 BCBC-5B-0 14130619 P212384 miRNA P212384 miRNA Unique Tile chr12:117689542-117690602 (+) mmu-mir-153 2 ATGTATTCAGAGGGCTGAAGCAG CAGGTAAAAGCTTCTCACCAGGA 2 6 2 1.1.1.2.2.6 BCBC-5B-0 14130638 P213224 Mdh1 Enhancer P213224 Enhancer Unique Tile chr11:21470678-21471591 (-) NM_008618 - 212 21471803 17449 Mdh1 B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2 malate dehydrogenase 1, NAD (soluble) MGI:97051 Mm.212703 11 11 A3.1|11 12.0 cM MDH1 4190 NM_145425 + 692 21472283 216560 AV249152 0 GTAACCCAGATACTGGAAAGGGG TGGGGTTTTGGATAAGATGATTG 2 6 3 1.1.1.2.3.6 BCBC-5B-0 14130657 P213974 Mettl1 Enhancer P213974 Enhancer Unique Tile chr10:126445610-126446512 (+) NM_010792 + 716 126444894 17299 Mettl1 2810012D02Rik methyltransferase-like 1 MGI:1339986 Mm.251593; Mm.392308; Mm.251593; Mm.392308; Mm.251593; Mm.392308; Mm.251593; Mm.392308; Mm.251593; Mm.392308; Mm.251593; Mm.392308; Mm.251593; Mm.392308; Mm.251593; Mm.392308 10 10 D3 METTL1 4234 NM_010009 + 4686 126451198 13115 Cyp27b1 0 GTGGCTGGAAACCACTTCTAATG AGAAAGACGGTTCAGGATCAGTG 2 6 4 1.1.1.2.4.6 BCBC-5B-0 14130676 P215096 Pex19 Enhancer P215096 Enhancer Unique Tile chr1:173965197-173966132 (+) NM_023041 + 1751 173963446 19298 Pex19 Pxf peroxisome biogenesis factor 19 MGI:1334458 Mm.247764 1 1 H3|1 93.6 cM PEX19 5824 NM_153555 + 18626 173984758 98193 Wdr42a 0 AGTTTGTTTCAAATCACACGGCT CCACAGCTCTTTCTCTTGCCTTA 2 6 5 1.1.1.2.5.6 BCBC-5B-0 14130695 P215846 2610312B22Rik Enhancer P215846 Enhancer Unique Tile chr2:83445549-83446581 (+) NM_026934 + 60 83445489 69082 2610312B22Rik 1700006A17Rik|1810012H02Rik|FM22|Ierepo4 RIKEN cDNA 2610312B22 gene MGI:1919747 Mm.27804; Mm.324441; Mm.27804; Mm.324441; Mm.27804; Mm.324441; Mm.27804; Mm.324441; Mm.27804; Mm.324441; Mm.27804; Mm.324441; Mm.27804; Mm.324441; Mm.27804; Mm.324441; Mm.27804; Mm.324441; Mm.27804; Mm.324441; Mm.27804; Mm.324441; Mm.27804; Mm.324441; Mm.27804; Mm.324441; Mm.27804; Mm.324441; Mm.27804; Mm.324441; Mm.27804; Mm.324441; Mm.27804; Mm.324441; Mm.27804; Mm.324441; Mm.27804; Mm.324441; Mm.27804; Mm.324441 2 2 E1 LEREPO4 55854 1 AAGGAGAAGATCATCGAGGTACG TAGCGTGTATAAAGGAACCCTGG 2 6 6 1.1.1.2.6.6 BCBC-5B-0 14130714 P216686 1810026J23Rik Enhancer P216686 Enhancer Unique Tile chr9:21337420-21338332 (-) NM_178619 + 4791 21343123 69773 1810026J23Rik - RIKEN cDNA 1810026J23 gene MGI:1917023 Mm.39704 9 9 A3 LOC90580 90580 NM_138303 - 4816 21343148 74766 Yipf2 0 TACCCTGTTACCTTGGACAATGC TCTGCTTATTGCCAACAAAAGGT 2 6 7 1.1.1.2.7.6 BCBC-5B-0 14130733 P217808 Klhl25 Enhancer P217808 Enhancer Unique Tile chr7:75725699-75726630 (+) NM_182782 + 3790 75721909 207952 Klhl25 2810402K13Rik|BC027373|MGC36331 kelch-like 25 (Drosophila) MGI:2668031 Mm.206223 7 7 D1 KLHL25 64410 0 ATCAGGGTCTTTCCTTTTTCCAC CGTGCACAGATAAAAGGGCTTAC 2 6 8 1.1.1.2.8.6 BCBC-5B-0 14130752 P218476 Akp3 ProximalPromoter P218476 ProximalPromoter Unique Tile chr1:88955090-88956123 (+) NM_007432 + 55 88956178 11648 Akp3 Akp-3|IAP alkaline phosphatase 3, intestine, not Mn requiring MGI:87984 Mm.377076 1 1 D|1 51.7 cM NM_021306 - 30075 88986198 13599 Ecel1 0 TTTGTTGATCCATTTATCCACCC ACTAAAGCACAGAGTGCCTGGAC 2 6 9 1.1.1.2.9.6 BCBC-5B-0 14130771 P219598 Centg2 ProximalPromoter P219598 ProximalPromoter Unique Tile chr1:91285128-91285830 (+) NM_178119;NM_001037136; + 151 91285981 347722 Centg2 Ggap1|R75364|mKIAA1099 centaurin, gamma 2 MGI:2653690 Mm.291135 1 1 D CENTG2 116987 1 GAATCAGGAATGTGGGCTGTTTA CTGGGACTTGTAGTCCATCACG 2 6 10 1.1.1.2.10.6 BCBC-5B-0 14130790 P220438 Flrt1 ProximalPromoter P220438 ProximalPromoter Unique Tile chr19:7172734-7173681 (-) NM_201411 - 17 7172717 396184 Flrt1 - fibronectin leucine rich transmembrane protein 3 MGI:3026647 Mm.386930 19 19 A FLRT1 23769 NM_001033154 + 19654 7153080 70494 5730409K12Rik 0 AGGTACTCCCCAAACATTGTTCA ACTCAGTATTCCTGCCACTCAGG 2 6 11 1.1.1.2.11.6 BCBC-5B-0 14130809 P221188 BC037393 ProximalPromoter P221188 ProximalPromoter Unique Tile chr5:150941204-150941915 (+) NM_201369 - 7248 150933956 381695 BC037393 MGC25830 cDNA sequence BC037393 MGI:2687207 Mm.425302 5 5 G3 PFAAP5 10443 NM_175310 + 42876 150984791 100710 Aprin 2 AGGAGTGGTGGCACATACCTTTA CGTTCTCTCAGCTTGGACTCAG 2 6 12 1.1.1.2.12.6 BCBC-5B-0 14130828 P222310 Strap Enhancer P222310 Enhancer Unique Tile chr6:137699623-137700504 (+) NM_011499 + 302 137699321 20901 Strap AW557906|C78091|C79202|Unrip serine/threonine kinase receptor associated protein MGI:1329037 Mm.22584 6 6 G1 STRAP 11171 NM_172733 + 18267 137718771 232449 Dera 1 ATCACGCCTTACGGCTACTTTCT CTGTGATTTAGAAGCATGCAACG 2 6 13 1.1.1.2.13.6 BCBC-5B-0 14130847 P223060 ProximalPromoter P223060 ProximalPromoter No Hits Tile 2 aataggacaaggaggctggagac aatggggttgagaaggagagaac 2 6 14 1.1.1.2.14.6 BCBC-5B-0 14130866 P223900 Gpatc2 Enhancer P223900 Enhancer Unique Tile chr1:188918615-188919587 (+) NM_026367 + 2289 188916326 67769 Gpatc2 5830436K05Rik|AI427714|AI447508|AW107440|AW491060 G patch domain containing 2 MGI:1915019 Mm.138321; Mm.374274; Mm.138321; Mm.374274; Mm.138321; Mm.374274; Mm.138321; Mm.374274; Mm.138321; Mm.374274; Mm.138321; Mm.374274; Mm.138321; Mm.374274; Mm.138321; Mm.374274; Mm.138321; Mm.374274; Mm.138321; Mm.374274; Mm.138321; Mm.374274; Mm.138321; Mm.374274; Mm.138321; Mm.374274; Mm.138321; Mm.374274; Mm.138321; Mm.374274; Mm.138321; Mm.374274; Mm.138321; Mm.374274 1 1 H5 GPATC2 55105 NM_028848 - 2362 188916253 74717 Spata17 0 GTAAATCCTCAGTGATTGGCACC CTCACTGCCTCTGCTTTCAAAAT 2 6 15 1.1.1.2.15.6 BCBC-5B-0 14130885 P225022 C230021P08Rik ProximalPromoter P225022 ProximalPromoter Unique Tile chr15:99285882-99286824 (-) NM_001001884 - 100 99285782 380969 C230021P08Rik - Riken cDNA C230021P08 gene MGI:3609653 Mm.22915 15 15 F1 KIAA1602 57701 NM_029236 - 15907 99302731 75284 4930556P03Rik 0 CCAAAGATACCTCTGAATTCCCC CAGCTCTATCCAGATGTTCCCAG 2 6 16 1.1.1.2.16.6 BCBC-5B-0 14130904 P225772 Olfr310 ProximalPromoter P225772 ProximalPromoter Unique Tile chr7:86145503-86146408 (-) NM_001011520 - 45 86145548 258222 Olfr310 MOR227-6P olfactory receptor 310 MGI:3030144 Mm.377384 7 7 D3 NM_001011866 - 36464 86182872 258196 Olfr309 0 ATCCCCAGCTAGCCAAAATGTAT CAAAAACCTCCAGGAAGAACTCA 2 6 17 1.1.1.2.17.6 BCBC-5B-0 14130923 P227096 Dpysl4 Pdx1 P227096 Pdx1 Unique Tile chr7:138976295-138977223 (+) NM_011993 + 38903 138937392 26757 Dpysl4 AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4 dihydropyrimidinase-like 4 MGI:1349764 Mm.250414 7 7 F4 DPYSL4 10570 0 AGAAGCTGAATAGACTGGGGGAG GAAACAATGATCCTGTGGTGGAT 2 6 18 1.1.1.2.18.6 BCBC-5B-0 14130942 P227360 Pdx1 P227360 Pdx1 Unique Tile chr2:134971074-134972015 (+) 0 GAAAGGCATACAGGTTTTAGCCC AAGTGCTATGATTAAAGGCGTGC 2 6 19 1.1.1.2.19.6 BCBC-5B-0 14130961 P003111 Blank P003111 Buffer Control Negative Blank 2 6 20 1.1.1.2.20.6 BCBC-5B-0 14130601 P211238 Gk2 PufferfishHuman P211238 PufferfishHuman Unique Tile chr5:97706650-97707627 (-) NM_010294 - 9327 97697323 14626 Gk2 GKTA|Gk-rs2 glycerol kinase 2 MGI:1329027 Mm.61206 5 5 E3|5 53.0 cM GK2 2712 0 ATGCACCACACAGCTTGACTTTA CTAGATAAACATTCACGACCGGC 2 7 1 1.1.1.2.1.7 BCBC-5B-0 14130620 P212078 Cryba2 ChickenHuman P212078 ChickenHuman Unique Tile chr1:74833969-74834869 (+) NM_021541 - 7627 74826342 12958 Cryba2 E130107M19Rik crystallin, beta A2 MGI:104336 Mm.86656 1 1 C3|1 40.8 cM CRYBA2 1412 NM_153111 - 15343 74818626 260298 Fev 1 GTGTCTGGTGGATGAGCTTCCT AGAGGTTAGAATGAAGCTGGGCT 2 7 2 1.1.1.2.2.7 BCBC-5B-0 14130639 P213200 Mapkapk2 Enhancer P213200 Enhancer Unique Tile chr1:132923625-132924605 (-) NM_008551 - 484 132925089 17164 Mapkapk2 AA960234|MK2|Rps6kc1 MAP kinase-activated protein kinase 2 MGI:109298 Mm.221235 1 1 E4 MAPKAPK2 9261 NM_145508 - 41175 132965780 226419 Dyrk3 1 CCTTTACTCATTGAGCTGGTTGG ATCGCAGAGGAGAGAGGAATCTT 2 7 3 1.1.1.2.3.7 BCBC-5B-0 14130658 P213950 Lef1 Enhancer P213950 Enhancer Unique Tile chr3:131095074-131096151 (+) NM_010703 + 3300 131099451 16842 Lef1 3000002B05|AI451430|Lef-1 lymphoid enhancer binding factor 1 MGI:96770 Mm.255219 3 3 G3|3 61.6 cM LEF1 51176 1 GCTCCCCAAACTCTTTGATCTTT AAACGAATTCATGTGATTCCAGG 2 7 4 1.1.1.2.4.7 BCBC-5B-0 14130677 P215072 Sdf2l1 Enhancer P215072 Enhancer Unique Tile chr16:17048569-17049525 (-) NM_022324 - 2641 17045928 64136 Sdf2l1 - stromal cell-derived factor 2-like 1 MGI:2149842 Mm.30222 16 16 A3 SDF2L1 23753 NM_029779 - 8247 17057772 76872 Ccdc116 0 TCCCATTTCAAGGAAGGACTGTA TGTCACAGTCTGTCCCATAGCAT 2 7 5 1.1.1.2.5.7 BCBC-5B-0 14130696 P215912 Ache Enhancer P215912 Enhancer Unique Tile chr5:137519862-137520909 (+) NM_009599 + 145 137519717 11423 Ache mE1a|mE1b|mE1c|mE1c-long|mE1d|mE1d'|mE1e acetylcholinesterase MGI:87876 Mm.255464 5 5 G2|5 77.0 cM ACHE 43 NM_027356 + 3526 137524435 70240 2700038N03Rik 1 CTTTTCCACTCCTCTTCCTCCTC CCCTATCAGCCATTAGTCACCTG 2 7 6 1.1.1.2.6.7 BCBC-5B-0 14130715 P216662 Txndc11 Enhancer P216662 Enhancer Unique Tile chr16:11004652-11005558 (-) NM_029582;NM_134105; - 3143 11001509 106200 Txndc11 2810408E11Rik|AI427833|EFP1|Txdc11 thioredoxin domain containing 11 MGI:1923620 Mm.291015 16 16 B1 TXNDC11 51061 NM_009223 + 24694 10979958 20621 Snn 0 CTTTCAGCCCACTTGTTGAGACT GCTGATTGCTATTGCTCCCTCTA 2 7 7 1.1.1.2.7.7 BCBC-5B-0 14130734 P217784 Plag1 Enhancer P217784 Enhancer Unique Tile chr4:3863649-3864589 (+) NM_019969 - 940 3865529 56711 Plag1 - pleiomorphic adenoma gene 1 MGI:1891916 Mm.331467; Mm.393883; Mm.331467; Mm.393883; Mm.331467; Mm.393883; Mm.331467; Mm.393883; Mm.331467; Mm.393883; Mm.331467; Mm.393883; Mm.331467; Mm.393883 4 4 A1 PLAG1 5324 NM_181391 + 1471 3866060 66433 Chchd7 0 GGGTGCACTTGAGTAATGGAAAG CATAAACAACCAAAATGGAGGGA 2 7 8 1.1.1.2.8.7 BCBC-5B-0 14130753 P218452 Cntn1 Enhancer P218452 Enhancer Unique Tile chr15:91952034-91953041 (+) NM_007727 + 3332 91956373 12805 Cntn1 AW495098|CNTN|F3cam contactin 1 MGI:105980 Mm.396903; Mm.4911; Mm.396903; Mm.4911; Mm.396903; Mm.4911; Mm.396903; Mm.4911; Mm.396903; Mm.4911; Mm.396903; Mm.4911; Mm.396903; Mm.4911; Mm.396903; Mm.4911 15 15 F|15 55.1 cM CNTN1 1272 0 CACTCAAGAGTCCTGTTTGCCTT ACTTTGGCTATGGCAGAGAACAG 2 7 9 1.1.1.2.9.7 BCBC-5B-0 14130772 P219292 C1qtnf6 Enhancer P219292 Enhancer Unique Tile chr15:78355299-78356315 (-) NM_028331 - 505 78356820 72709 C1qtnf6 2810036M19Rik|AW743441|CTRP6 C1q and tumor necrosis factor related protein 6 MGI:1919959 Mm.34776 15 15 E1 C1QTNF6 114904 NM_009218 - 15285 78371600 20607 Sstr3 0 TGTGTCTCTGAGCATCTGACTCC AAGTGATTCGAAGGTGGTTGTGT 2 7 10 1.1.1.2.10.7 BCBC-5B-0 14130791 P220414 Olfr594 ProximalPromoter P220414 ProximalPromoter Unique Tile chr7:103092625-103093590 (+) NM_207143 + 50 103093540 258246 Olfr594 MOR32-10 olfactory receptor 594 MGI:3030428 Mm.377390 7 7 E3 NM_146380 + 6943 103085682 258378 Olfr593 0 TGATTGTCTTGGATTTAGGGGAA AGCAATAGGAAAGAGGAAGGGTG 2 7 11 1.1.1.2.11.7 BCBC-5B-0 14130810 P221164 Gbp1 ProximalPromoter P221164 ProximalPromoter Unique Tile chr3:142436861-142437854 (+) NM_010259 + 85 142437939 14468 Gbp1 5830475C06|Gbp-1|MGC124334|Mag-1|Mpa-1|Mpa1 guanylate nucleotide binding protein 1 MGI:95666 Mm.45740 3 3 H1|3 67.4 cM GBP1 2633 NM_153564 + 2542 142434319 229898 Gbp5 1 CCAGCCTGGTCTACAAAGTGAGT CATTAGGTTTGCCCAAGTTTCTG 2 7 12 1.1.1.2.12.7 BCBC-5B-0 14130829 P222286 Enhancer P222286 Enhancer No Hits Tile 1 agagctgtctgatatcgggtgac gaaggagccgccatttgatac 2 7 13 1.1.1.2.13.7 BCBC-5B-0 14130848 P223126 Tas1r2 ProximalPromoter P223126 ProximalPromoter Unique Tile chr4:138924565-138925506 (+) NM_031873 + 107 138925613 83770 Tas1r2 Gpr71|T1r2|TR2 taste receptor, type 1, member 2 MGI:1933546 Mm.190612 4 4 D3|4 70.0 cM TAS1R2 80834 NM_175438 + 29380 138895185 212647 Aldh4a1 2 GTTACGGATAGTTGTGAGCCACC GGAACAGAGACTGGAGCAGGATA 2 7 14 1.1.1.2.14.7 BCBC-5B-0 14130867 P223876 ProximalPromoter P223876 ProximalPromoter Unique Tile chr14:44389233-44390310 (-) 0 ATTTACGTGTGCAGGGAGTTTGT GAGCAGGTGTACCACTGGACTCT 2 7 15 1.1.1.2.15.7 BCBC-5B-0 14130886 P224998 Nuak1 ProximalPromoter P224998 ProximalPromoter Unique Tile chr10:83870477-83871191 (-) NM_001004363 - 207 83870270 77976 Nuak1 AU014801|AW494241|B230104P22Rik|MGC90816 ZNUAK family, SNF1-like kinase, 1 MGI:1925226 Mm.25874 10 10 C1 NUAK1 9891 1 GTTCCTGACTCCGCCTTTCTC CGCTGGAGAGGAGTGTTATGTG 2 7 16 1.1.1.2.16.7 BCBC-5B-0 14130905 P225748 Utp18 ProximalPromoter P225748 ProximalPromoter Unique Tile chr11:93701772-93702724 (-) NM_001013375 - 84 93701856 217109 Utp18 6230425C22Rik|6430513M13|Wdr50 UTP18, small subunit (SSU) processome component, homolog (yeast) MGI:1923402 Mm.379350 11 11 D UTP18 51096 NM_134012 + 416 93702308 103537 Mbtd1 1 AGAACCCTAAGTCAGGGGTTGAG GACGTTCACGTGGAGTACCACT 2 7 17 1.1.1.2.17.7 BCBC-5B-0 14130924 P002457 Blank P002457 Buffer Control Negative Blank 2 7 18 1.1.1.2.18.7 BCBC-5B-0 14130943 P227336 Pdx1 P227336 Pdx1 Unique Tile chr3:77225468-77226408 (+) 2 AGTGGACACATCATGGAGACAGA GGCCTTGATTTAGCTTCGGTAAT 2 7 19 1.1.1.2.19.7 BCBC-5B-0 14130962 P003315 Blank P003315 Buffer Control Negative Blank 2 7 20 1.1.1.2.20.7 BCBC-5B-0 14130602 P211304 PufferfishHuman P211304 PufferfishHuman Unique Tile chr6:98991177-98992190 (+) 2 AGTTTCATCTGATGGGACGTGTT GTCCCTTTTGCTTTGTTTGTTTG 2 8 1 1.1.1.2.1.8 BCBC-5B-0 14130621 P212054 Rnf32 PufferfishHuman P212054 PufferfishHuman Unique Tile chr5:29476785-29477716 (-) NM_021470 + 49148 29526864 56874 Rnf32 1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2|MGC107158 ring finger protein 32 MGI:1861747 Mm.87352 5 5 B1|5 15.81 cM RNF32 140545 1 CGGCTGACTCTTTCCTTATCCTT ACCATAAACTGAAATCAAGGCCA 2 8 2 1.1.1.2.2.8 BCBC-5B-0 14130640 P213176 Arhgef2 Enhancer P213176 Enhancer Unique Tile chr3:88707183-88708091 (+) NM_008487 + 72 88707111 16800 Arhgef2 AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651 rho/rac guanine nucleotide exchange factor (GEF) 2 MGI:103264 Mm.239329 3 3 F1 ARHGEF2 9181 NM_181817 - 30978 88739069 242093 Rxfp4 1 ATTATGTCTCGGATCGAATCCCT AGACTCCAGATGACAGGTGAAGG 2 8 3 1.1.1.2.3.8 BCBC-5B-0 14130659 P213926 Jak3 Enhancer P213926 Enhancer Unique Tile chr8:74605043-74606105 (+) NM_010589 + 1209 74607314 16453 Jak3 fae|wil Janus kinase 3 MGI:99928 Mm.249645 8 8 B3.3|8 33.0 cM JAK3 3718 NM_001029873 - 4407 74600636 382018 Unc13a 1 ATAAAAGGCGAGGTTTTCAGAGG ACAAATTAGGGTGACCAACATGG 2 8 4 1.1.1.2.4.8 BCBC-5B-0 14130678 P214766 Tspan5 Enhancer P214766 Enhancer Unique Tile chr3:138680203-138681133 (+) NM_019571 + 564 138679639 56224 Tspan5 2810455A09Rik|4930505M03Rik|AU024142|NET-4|Tm4sf9 tetraspanin 5 MGI:1928096 Mm.31927 3 3 H1 TSPAN5 10098 0 GGGGAGAGAAACACTTCATCCTT GAAAAATAACACGGTCTGCCAAC 2 8 5 1.1.1.2.5.8 BCBC-5B-0 14130697 P215888 Fyttd1 Enhancer P215888 Enhancer Unique Tile chr16:32797708-32798486 (+) NM_027226 + 122 32797586 69823 Fyttd1 2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190 forty-two-three domain containing 1 MGI:1917955 Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094; Mm.12831; Mm.393225; Mm.413094 16 16 B3 FYTTD1 84248 NM_172615 - 9610 32788098 224118 1700021K19Rik 1 GCAATGAGAACCTGGACAAAATC GAAGCCCTCATACTGTTGGATTG 2 8 6 1.1.1.2.6.8 BCBC-5B-0 14130716 P216638 Pparbp Enhancer P216638 Enhancer Unique Tile chr11:98012484-98013400 (-) NM_013634;NM_134027; - 3134 98009350 19014 Pparbp AI480703|CRSP210|DRIP205|MED1|MGC90617|PBP|TRAP220 peroxisome proliferator activated receptor binding protein MGI:1100846 Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875; Mm.12926; Mm.38875 11 11 D|11 61.0 cM PPARBP 5469 NM_026952 + 6003 98019403 69131 Crkrs 0 TGTCAAACACTGAAATAATGCCG GGGAAGAAGGAGCAGAGAGAATC 2 8 7 1.1.1.2.7.8 BCBC-5B-0 14130735 P217760 4931440P22Rik Enhancer P217760 Enhancer Unique Tile chr3:65616904-65617810 (+) NM_001033527 - 404 65617308 71004 4931440P22Rik - RIKEN cDNA 4931440P22 gene MGI:1918254 Mm.386803 3 3 E1 NM_178892 + 503 65616401 99929 Tiparp 1 GTTCGAGTTAACTTTGAGTGCCG TGTTAGAGAAAGCCTCACGAAGG 2 8 8 1.1.1.2.8.8 BCBC-5B-0 14130754 P218518 Il17c ProximalPromoter P218518 ProximalPromoter Unique Tile chr8:125307184-125308093 (+) NM_145834 + 81 125308174 234836 Il17c IL-17C interleukin 17C MGI:2446486 Mm.222808 8 8 E1 IL17C 27189 NM_007806 - 10888 125318981 13057 Cyba 1 AGGGTTTCTCTATGTAGCCCTGG GATGGGGTTTAGATTTCCCTTTG 2 8 9 1.1.1.2.9.8 BCBC-5B-0 14130773 P219268 4931417E11Rik Enhancer P219268 Enhancer Unique Tile chr6:73400132-73401083 (-) NM_025737 - 956 73399176 66740 4931417E11Rik - RIKEN cDNA 4931417E11 gene MGI:1913990 Mm.233629 6 6 C1 0 GCGCTCTCAAGAGCTAAGACAAC AAATGTGAAGCCTGGCTATTGAA 2 8 10 1.1.1.2.10.8 BCBC-5B-0 14130792 P220390 Ceacam9 Enhancer P220390 Enhancer Unique Tile chr7:15877680-15878608 (+) NM_011927 + 1842 15880450 26368 Ceacam9 AA410097|AW545709|Cea-5|Cea5|mmCGM8 CEA-related cell adhesion molecule 9 MGI:1347247 Mm.27096 7 7 A2|7 2.5 cM NM_198613 + 18375 15896983 232910 Ap2s1 0 CTCAACCTTAGCACCTGTCTCGT AAACATAAAAAGAAGCCAGCGGT 2 8 11 1.1.1.2.11.8 BCBC-5B-0 14130811 P221140 Speer4a ProximalPromoter P221140 ProximalPromoter Unique Tile chr5:26370203-26371173 (-) NM_029376 - 87 26370290 75657 Speer4a 1700027N01Rik|SPEER-4A spermatogenesis associated glutamate (E)-rich protein 4a MGI:1922907 Mm.389607 5 5 B1 0 AGATTGGGTTTTATGGGATTTGG TCTCTGGTCTCTCTCCCATTCAC 2 8 12 1.1.1.2.12.8 BCBC-5B-0 14130830 P221980 6030413G23Rik ProximalPromoter P221980 ProximalPromoter Unique Tile chr11:121489250-121490283 (-) NM_178664 - 21 121489229 210004 6030413G23Rik B3GNTL1|MGC113804 RIKEN cDNA 6030413G23 gene MGI:2441705 Mm.386847 11 11 E2 NM_144797 + 6850 121497133 210029 Metrnl 1 AGGGTGTGGATGACCAAAATATG CTAGGGACTTACGGGTATGGGAG 2 8 13 1.1.1.2.13.8 BCBC-5B-0 14130849 P223102 ProximalPromoter P223102 ProximalPromoter No Hits Tile 1 gtgtgtgtgtgtgtatgtgtggg ccaacaatgaaggcaatgagagt 2 8 14 1.1.1.2.14.8 BCBC-5B-0 14130868 P223852 Myf5 Enhancer P223852 Enhancer Unique Tile chr10:106893462-106894370 (-) NM_008656 - 3218 106890244 17877 Myf5 B130010J22Rik myogenic factor 5 MGI:97252 Mm.4984 10 10 D1|10 59.0 cM MYF5 4617 NM_008657 - 4469 106898839 17878 Myf6 0 CCTTGGTGTGTTTGTGATTTGAA CGAAGACTCCCAAGAGAGATCAA 2 8 15 1.1.1.2.15.8 BCBC-5B-0 14130887 P224974 Gle1l ProximalPromoter P224974 ProximalPromoter Unique Tile chr2:29756385-29757313 (+) NM_028923 + 122 29757435 74412 Gle1l 4933405K21Rik|AA553313 GLE1 RNA export mediator-like (yeast MGI:1921662 Mm.275121 2 2 B GLE1L 2733 NM_013615 + 44277 29712108 18286 Odf2 0 TCTGGTCTTAGAAGGCACCTACG CTAAACTAGCGAGCCTACGTGGA 2 8 16 1.1.1.2.16.8 BCBC-5B-0 14130906 P225814 ProximalPromoter P225814 ProximalPromoter No Hits Tile 2 aaagcatggtccaggtatctcaa cacacctcttgctctagtccctc 2 8 17 1.1.1.2.17.8 BCBC-5B-0 14130925 P002433 Blank P002433 Buffer Control Negative Blank 2 8 18 1.1.1.2.18.8 BCBC-5B-0 14130944 P227312 D930036F22Rik Pdx1 P227312 Pdx1 Unique Tile chr12:52893558-52894497 (+) NM_177171 - 617 52892941 320487 D930036F22Rik C230081H03Rik|mKIAA1316 RIKEN cDNA D930036F22 gene MGI:2444133 Mm.131941 12 12 C1 C14orf125 25938 NM_029545 - 33624 52928121 328092 6530401N04Rik 0 ACACTCGGTTTCTTGGTTGTCTC ACTAAGGCATGGCTATGTCAAGG 2 8 19 1.1.1.2.19.8 BCBC-5B-0 14130963 P003315 Blank P003315 Buffer Control Negative Blank 2 8 20 1.1.1.2.20.8 BCBC-5B-0 14130603 P211280 PufferfishHuman P211280 PufferfishHuman Unique Tile chr3:18630662-18631707 (-) 0 AGGCTTGTGCTCTTGGTGAAATA GTTGCTGCTAATCCTCTGACCAT 2 9 1 1.1.1.2.1.9 BCBC-5B-0 14130622 P212030 PufferfishHuman P212030 PufferfishHuman Unique Tile chr14:21365560-21366639 (+) 0 GTCCCTACACAAAACCAAAACCA TGCAGGTATTTTTGAGGAGAAGG 2 9 2 1.1.1.2.2.9 BCBC-5B-0 14130641 P213152 Itga6 Enhancer P213152 Enhancer Unique Tile chr2:71588158-71589101 (+) NM_008397 + 237 71587921 16403 Itga6 5033401O05Rik|AI115430|Cd49f integrin alpha 6 MGI:96605 Mm.225096 2 2 C2|2 38.0 cM ITGA6 3655 1 CTGTGAGTTCCCCGACTCTTC CATGGATCAAGAATTTAACCCCA 2 9 3 1.1.1.2.3.9 BCBC-5B-0 14130660 P213992 Myc Enhancer P213992 Enhancer End Repeat Tile chr15:61816049-61817030 (+) NM_010849 + 1043 61815006 17869 Myc AU016757|Myc2|Niard|Nird|c-myc myelocytomatosis oncogene MGI:97250 Mm.2444 15 15 D2-D3|15 32.0 cM MYC 4609 1 GCATTTAAATTTCAGCTTGGTGC TGTGTGTGTGTGTGTGTGTGTGT 2 9 4 1.1.1.2.4.9 BCBC-5B-0 14130679 P214742 Enhancer P214742 Enhancer No Hits Tile 1 ttggttgtccttgcatctcacta aaacttgacgcttcagatcatcc 2 9 5 1.1.1.2.5.9 BCBC-5B-0 14130698 P215864 Dcps Enhancer P215864 Enhancer Unique Tile chr9:34924574-34925496 (-) NM_027030 - 162 34925658 69305 Dcps 1700001E16Rik|AA408441 decapping enzyme, scavenger MGI:1916555 Mm.229110 9 9 A4 DCPS 28960 NM_054096 - 15557 34941053 117149 Tirap 0 ACAAAAAGTGCTCAGGGAGTCTG TCTGAAAAAGGCTCAAAATGCTC 2 9 6 1.1.1.2.6.9 BCBC-5B-0 14130717 P216614 Cd276 Enhancer P216614 Enhancer Unique Tile chr9:58340134-58341099 (-) NM_133983 - 1057 58339077 102657 Cd276 6030411F23Rik|AU016588|B7RP-2|B7h3 CD276 antigen MGI:2183926 Mm.5356 9 9 B CD276 80381 NM_009145 + 39446 58380545 20320 Nptn 0 CCTGAGTCCAGAATGAAGGAGAA AGATGCTTCCAGTCCAAAGTCTG 2 9 7 1.1.1.2.7.9 BCBC-5B-0 14130736 P217454 Ahnak Enhancer P217454 Enhancer Unique Tile chr19:9056823-9057766 (+) NM_009643;NM_001039959; + 495 9056328 66395 Ahnak 1110004P15Rik|2310047C17Rik|AA589382|AV091586|DY6 AHNAK nucleoprotein (desmoyokin) MGI:1316648 Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302; Mm.203866; Mm.392302 19 19 A AHNAK 79026 NM_026007 + 21558 9035265 67160 Eef1g 1 CTCAGAGCGCTACTTGGTTCCTA TGTACAGCTAGCCCTGATGTCAA 2 9 8 1.1.1.2.8.9 BCBC-5B-0 14130755 P218494 Olfr482 ProximalPromoter P218494 ProximalPromoter Unique Tile chr7:107886763-107887835 (-) NM_146733 - 18 107886745 258728 Olfr482 MOR204-14 olfactory receptor 482 MGI:3030316 Mm.349555 7 - NM_146735 + 6620 107894455 258730 Olfr483 0 CCTGCTGTACATACATGCACCAT GCTAGATTGAGGCTGTGATGGAT 2 9 9 1.1.1.2.9.9 BCBC-5B-0 14130774 P219244 Chst7 Enhancer P219244 Enhancer Unique Tile chrX:19218916-19219962 (+) NM_021715 + 2364 19216552 60322 Chst7 2600013M07Rik|GST5 carbohydrate (N-acetylglucosamino) sulfotransferase 7 MGI:1891767 Mm.44827 X X A3.1-A3.2 CHST7 56548 0 GATCAGCTTCCTCTGGTGCTCTA AGTGTCCAATGCAGAAGGAAGAG 2 9 10 1.1.1.2.10.9 BCBC-5B-0 14130793 P220366 ProximalPromoter P220366 ProximalPromoter Unique Tile chr18:13005404-13006351 (-) 1 CCCTACAAATAGACTGACCACGG AGTACCGCAAGGTCTCCCTAAGT 2 9 11 1.1.1.2.11.9 BCBC-5B-0 14130812 P221206 Six3 ProximalPromoter P221206 ProximalPromoter Unique Tile chr17:85528495-85529539 (+) NM_011381 + 0 85529539 20473 Six3 Six3a|Six3alpha|Six3b|Six3beta sine oculis-related homeobox 3 homolog (Drosophila) MGI:102764 Mm.370208; Mm.391586; Mm.370208; Mm.391586; Mm.370208; Mm.391586; Mm.370208; Mm.391586; Mm.370208; Mm.391586; Mm.370208; Mm.391586; Mm.370208; Mm.391586; Mm.370208; Mm.391586 17 17 E4|17 45.5 cM SIX3 6496 2 TGTTAATCTTAGCCCTGGCTTCA ATTCAGGGAGAGGAAGAGAGAGG 2 9 12 1.1.1.2.12.9 BCBC-5B-0 14130831 P221956 Olfr143 ProximalPromoter P221956 ProximalPromoter Unique Tile chr9:38003158-38004061 (+) NM_146806 + 72 38003989 258802 Olfr143 K18|MOR170-6 olfactory receptor 143 MGI:2177526 Mm.377698 9 - NM_146875 + 15024 38019085 258875 Olfr895 0 AATGGCAAATGAATATGTCCCTG AGGTTGGTCTGTCAATCCCATAA 2 9 13 1.1.1.2.13.9 BCBC-5B-0 14130850 P223078 Slc6a20 Enhancer P223078 Enhancer Unique Tile chr9:123484956-123485929 (-) NM_011731 - 3782 123481174 22599 Slc6a20 AA986306|Sit1|XT3|Xtrp3 solute carrier family 6 (neurotransmitter transporter), member 20 MGI:1336891 Mm.394595; Mm.41963; Mm.394595; Mm.41963; Mm.394595; Mm.41963; Mm.394595; Mm.41963; Mm.394595; Mm.41963; Mm.394595; Mm.41963; Mm.394595; Mm.41963; Mm.394595; Mm.41963; Mm.394595; Mm.41963 9 9 F|9 70.9 cM SLC6A20 54716 NM_009913 + 41207 123527136 12769 Ccr9 0 TCCCTTTATAGAAGAGGGCTTGG ATGCAGAAGTGAATGAAGGTGGT 2 9 14 1.1.1.2.14.9 BCBC-5B-0 14130869 P223828 Ccdc117 Enhancer P223828 Enhancer Unique Tile chr11:5464989-5466071 (+) NM_134033 - 22814 5442175 104479 Ccdc117 1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601|MGC30640 coiled-coil domain containing 117 MGI:2144383 Mm.210403 11 11 A1 CCDC117 150275 NM_013842 + 44001 5420988 22433 Xbp1 0 TCTAGCCGTAGAGTTTCAGGTGG CTACAGCGCTACTCGCCATAACT 2 9 15 1.1.1.2.15.9 BCBC-5B-0 14130888 P224668 ProximalPromoter P224668 ProximalPromoter No Hits Tile 0 cccagccataaaacctaccctac gacctacagctttaaccgggact 2 9 16 1.1.1.2.16.9 BCBC-5B-0 14130907 P225790 ProximalPromoter P225790 ProximalPromoter Unique Tile chr13:27858295-27859241 (+) 0 ATATTGGCAACGGAGAAAATGTG AGAACGTAAAGCAACGAGCATTC 2 9 17 1.1.1.2.17.9 BCBC-5B-0 14130926 P227798 Pdx1 P227798 Pdx1 Unique Tile chr5:29168538-29169524 (+) 0 ATTCCATCTCCTTTTTGAGGGTC TAGAGCACTTTGCTCACAACGAG 2 9 18 1.1.1.2.18.9 BCBC-5B-0 14130945 P227288 Pdx1 P227288 Pdx1 Unique Tile chr9:9439589-9440526 (+) 0 TGGTTCTGAGGTACACAAGGTGA GGCCCTGTAACAAGAATAGTTGA 2 9 19 1.1.1.2.19.9 BCBC-5B-0 14130964 P003267 Blank P003267 Buffer Control Negative Blank 2 9 20 1.1.1.2.20.9 BCBC-5B-0 14130604 P211256 Pax6 PufferfishHuman P211256 PufferfishHuman Unique Tile chr2:105482619-105483542 (+) NM_013627 + 5328 105477291 18508 Pax6 1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey paired box gene 6 MGI:97490 Mm.3608 2 2 E3|2 58.0 cM PAX6 5080 0 GTCTATGAGGCCTTGCACACTCT TCGGAAACCACAGGAATAGAAAA 2 10 1 1.1.1.2.1.10 BCBC-5B-0 14130623 P212006 PufferfishHuman P212006 PufferfishHuman End Repeat Tile chr7:36246082-36247006 (-) 1 AAATGCTTATGATCGTCATGGCT TGTGTGTGTGTGTGTGTGTGTGT 2 10 2 1.1.1.2.2.10 BCBC-5B-0 14130642 P212846 Atp5a1 Enhancer P212846 Enhancer Unique Tile chr18:77978114-77979181 (+) NM_007505 + 18 77978096 11946 Atp5a1 AI035633|AL022851|AL023067|Atpm|D18Ertd206e ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1 MGI:88115 Mm.276137 18 18 E3|18 50.0 cM ATP5A1 498 NM_146089 - 6258 77971856 225745 Ccdc5 0 AGAAGCTGCAAGGATGCTGTC ATCTAGCAGCAAAGTGGAACCAG 2 10 3 1.1.1.2.3.10 BCBC-5B-0 14130661 P213968 Mbd2 Enhancer P213968 Enhancer Unique Tile chr18:70694364-70695414 (+) NM_010773 + 704 70693660 17191 Mbd2 MBD2a methyl-CpG binding domain protein 2 MGI:1333813 Mm.322 18 18 E2|18 44.0 cM MBD2 8932 NM_011972 - 38674 70655690 26447 Poli 0 GTTAAATGTCAGTTCGGGGTCAG ATATTACGCTGGCTGAAAACTGC 2 10 4 1.1.1.2.4.10 BCBC-5B-0 14130680 P214718 Paxip1 Enhancer P214718 Enhancer Unique Tile chr5:28121016-28122049 (-) NM_018878 - 77 28122126 55982 Paxip1 D5Ertd149e|PTIP PAX interacting (with transcription-activation domain) protein 1 MGI:1890430 Mm.277190 5 5 11.0 cM PAXIP1 22976 1 CGAAGTTCCAGAGGAGCTATTCC TTTAACACTCAACACCTCCAGCA 2 10 5 1.1.1.2.5.10 BCBC-5B-0 14130699 P215840 Cab39l Enhancer P215840 Enhancer Unique Tile chr14:58395223-58396217 (+) NM_026908 + 117 58395106 69008 Cab39l 1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L calcium binding protein 39-like MGI:1914081 Mm.179091 14 14 C3 CAB39L 81617 0 GCGACTTAACTAGCAGGGGATTC CAGTGTCTTGCTCTTCCCAAACT 2 10 6 1.1.1.2.6.10 BCBC-5B-0 14130718 P216680 Mbnl3 Enhancer P216680 Enhancer Unique Tile chrX:47449185-47450090 (-) NM_134163 - 369 47450459 171170 Mbnl3 A530038J18Rik|CHCR|E430034C16Rik|MBLX|MBLX39|MBXL muscleblind-like 3 (Drosophila) MGI:2444912 Mm.295324 X X A5 MBNL3 55796 1 AGAACTTAGGGCACGCCTTTAAC AGTGTTAAATTGCCTTGTTTGCG 2 10 7 1.1.1.2.7.10 BCBC-5B-0 14130737 P217430 Il28ra Enhancer P217430 Enhancer Unique Tile chr4:134962113-134963145 (+) NM_174851 + 3514 134958599 242700 Il28ra CRF2-12|IFNLR1 interleukin 28 receptor alpha MGI:2429859 Mm.259623 4 4 D3 IL28RA 163702 NM_178257 + 37150 135000295 230828 Il22ra1 0 TGTTTATCCTGGCATGTCTTCCT GAGACTCACCCTATCTCCAGCAA 2 10 8 1.1.1.2.8.10 BCBC-5B-0 14130756 P218470 Tas2r109 ProximalPromoter P218470 ProximalPromoter Unique Tile chr6:132946635-132947650 (-) NM_207017 - 23 132946658 387343 Tas2r109 T2R09|Tas2r9|mGR09|mt2r62 taste receptor, type 2, member 109 MGI:2681214 Mm.377905 6 6 G1|6 63.6 cM NM_207030 - 23098 132923537 387356 Tas2r131 0 GGAGTTTAAGGGAGAGGTGGCTA TGTTCTCTTCAAAAGATGCTCCA 2 10 9 1.1.1.2.9.10 BCBC-5B-0 14130775 P219220 D10Ertd610e Enhancer P219220 Enhancer Unique Tile chr10:126591966-126592769 (-) NM_028027 - 199 126592968 52666 D10Ertd610e 2410008H17Rik|GEFT DNA segment, Chr 10, ERATO Doi 610, expressed MGI:1277173 Mm.272230 10 10 D3|10 70.0 cM GEFT 115557 NM_030714 - 5889 126598658 80904 Dtx3 1 CTTTAGGAGAATTGCACTCCACG GCCCCTTGGACTCTAAGATGAAG 2 10 10 1.1.1.2.10.10 BCBC-5B-0 14130794 P220060 Ddi2 ProximalPromoter P220060 ProximalPromoter Unique Tile chr4:140995678-140996579 (-) NM_001017966 - 183 140995495 68817 Ddi2 1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698 DNA-damage inducible protein 2 Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721 4 4 E1 NM_023544 - 37841 140957837 69994 Rsc1a1 0 AAGAAAGAAAGAGAATGGGGGTG AACCCCACGATTTAATGCTTGA 2 10 11 1.1.1.2.11.10 BCBC-5B-0 14130813 P221182 Olfr770 ProximalPromoter P221182 ProximalPromoter Unique Tile chr10:128536799-128537794 (-) NM_146863 - 84 128536715 258862 Olfr770 MOR114-5 olfactory receptor 770 MGI:3030604 Mm.391449 10 - NM_146267 - 21427 128515372 257667 Olfr769 0 TGTGGGCTACAATAACCAGCTTT TTAGCCATAAGAAAGCAAACCCA 2 10 12 1.1.1.2.12.10 BCBC-5B-0 14130832 P221932 Lrrn6a ProximalPromoter P221932 ProximalPromoter Unique Tile chr9:56435383-56436317 (-) NM_181074 - 47952 56483335 235402 Lrrn6a 4930471K13Rik|AV148400|LERN1|LINGO-1|UNQ201 leucine rich repeat neuronal 6A MGI:1915522 Mm.246605 9 9 A3 LRRN6A 84894 1 AAGGAAAGGATCCAGTGTTAGCC TCTTCCAACAACCTCAGGAAGAG 2 10 13 1.1.1.2.13.10 BCBC-5B-0 14130851 P223054 Tchhl1 Enhancer P223054 Enhancer Unique Tile chr3:93550155-93551096 (+) NM_027762 + 3061 93554157 71325 Tchhl1 5430400H23Rik|AA589420|S100a17|Thhl1 trichohyalin-like 1 MGI:1918575 Mm.68064 3 3 F2 0 ATCTTCCCAGCCCAAACATCTAT CATGGCTGTAAACAGACTTGTGC 2 10 14 1.1.1.2.14.10 BCBC-5B-0 14130870 P223894 Hexb Enhancer P223894 Enhancer Unique Tile chr13:98302815-98303801 (-) NM_010422 - 3846 98298969 15212 Hexb - hexosaminidase B MGI:96074 Mm.27816 13 13 D1|13 46.0 cM HEXB 3074 NM_007930 + 38067 98341868 13803 Enc1 0 AGTATCACCCTGGGGAAGAAGAG GATAACAAAGTCCAACTCACCCG 2 10 15 1.1.1.2.15.10 BCBC-5B-0 14130889 P224644 Gnal ProximalPromoter P224644 ProximalPromoter Unique Tile chr18:67257926-67258976 (+) NM_177137;NM_010307; + 218 67259194 14680 Gnal 2610011C15Rik|9630020G10Rik|Gna10|Golf|MGC90869 guanine nucleotide binding protein, alpha stimulating, olfactory type MGI:95774 Mm.73777 18 18 E1|18 41.0 cM GNAL 2774 0 CACAGGTCAGGTCATGCTGATAG CCTTAAAGGCAGGTCGTCTTAGG 2 10 16 1.1.1.2.16.10 BCBC-5B-0 14130908 P225766 Zcwpw1 ProximalPromoter P225766 ProximalPromoter Unique Tile chr5:138016799-138017746 (+) NM_001005426 + 84 138017662 381678 Zcwpw1 Gm1053|MGC76794 zinc finger, CW type with PWWP domain 1 MGI:2685899 Mm.332765 5 5 G2 ZCWPW1 55063 NM_144913 - 838 138015961 231803 Bcdin3 0 GGAGAACCTGAGGAGAGGATGAT AAAAGACAACTACCTTCTGGGGC 2 10 17 1.1.1.2.17.10 BCBC-5B-0 14130927 P227774 Pdx1 P227774 Pdx1 Unique Tile chr1:54806659-54807639 (+) 0 AGGAGGGTAAAATTGTGAGGAGC CTTTACCCACTGAAACATCTGCC 2 10 18 1.1.1.2.18.10 BCBC-5B-0 14130946 P226118 Rbpsuh Pdx1 P226118 Pdx1 Unique Tile chr5:53883840-53884740 (+) NM_009035 + 4938 53878902 19664 Rbpsuh AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBPjk recombining binding protein suppressor of hairless (Drosophila) MGI:96522 Mm.209292; Mm.321004; Mm.427686; Mm.209292; Mm.321004; Mm.427686; Mm.209292; Mm.321004; Mm.427686; Mm.209292; Mm.321004; Mm.427686; Mm.209292; Mm.321004; Mm.427686; Mm.209292; Mm.321004; Mm.427686; Mm.209292; Mm.321004; Mm.427686; Mm.209292; Mm.321004; Mm.427686; Mm.209292; Mm.321004; Mm.427686; Mm.209292; Mm.321004; Mm.427686; Mm.209292; Mm.321004; Mm.427686; Mm.209292; Mm.321004; Mm.427686; Mm.209292; Mm.321004; Mm.427686; Mm.209292; Mm.321004; Mm.427686; Mm.209292; Mm.321004; Mm.427686; Mm.209292; Mm.321004; Mm.427686; Mm.209292; Mm.321004; Mm.427686; Mm.209292; Mm.321004; Mm.427686; Mm.209292; Mm.321004; Mm.427686; Mm.209292; Mm.321004; Mm.427686; Mm.209292; Mm.321004; Mm.427686; Mm.209292; Mm.321004; Mm.427686 5 5 C1-C3|5 37.5 cM RBPSUH 3516 2 TGTCCTCTTCTGGTGTGTCTGAA TGATGAGGAAATTACCAGTGAGC 2 10 19 1.1.1.2.19.10 BCBC-5B-0 14130965 P003267 Blank P003267 Buffer Control Negative Blank 2 10 20 1.1.1.2.20.10 BCBC-5B-0 14130605 P211232 Paqr3 PufferfishHuman P211232 PufferfishHuman Unique Tile chr5:97388376-97389401 (-) NM_198422 - 36478 97351898 231474 Paqr3 6330415A20Rik|AY424292 progestin and adipoQ receptor family member III MGI:2679683 Mm.332505 5 5 E3 PAQR3 152559 0 CCTATCGTGGCTGAAGACTCCTA AGCATGACTGGAGCCTTTTACAG 2 11 1 1.1.1.2.1.11 BCBC-5B-0 14130624 P212072 Eef1a2 ChickenHuman P212072 ChickenHuman End Repeat Tile chr2:181076754-181077791 (+) NM_007906 - 8631 181086422 13628 Eef1a2 Eef1a|S1|wasted|wst eukaryotic translation elongation factor 1 alpha 2 MGI:1096317 Mm.2645 2 2 H4|2 110.0 cM EEF1A2 1917 NM_001006678;NM_001006674;NM_001003824;NM_001006680;NM_001006677;NM_001006669;NM_001006675;NM_001006668;NM_001003825;NM_010611;NM_001006679;NM_001006676; - 12121 181064633 16536 Kcnq2 1 GAAATCTAGGGGGAAGCAAGTGT ACACACACACACACACACACACA 2 11 2 1.1.1.2.2.11 BCBC-5B-0 14130643 P212822 Ap1b1 Enhancer P212822 Enhancer Unique Tile chr11:4887074-4888018 (+) NM_007454 + 61 4887013 11764 Ap1b1 Adtb1 adaptor protein complex AP-1, beta 1 subunit MGI:1096368 Mm.274816 11 11 A2 AP1B1 162 NM_010904 - 38958 4848116 380684 Nefh 0 GGCGAGATAGGAAAACAAACAAA TTGTTCCCCTCTTTACTGCAAAA 2 11 3 1.1.1.2.3.11 BCBC-5B-0 14130662 P213944 Lamc1 Enhancer P213944 Enhancer Unique Tile chr1:155095994-155096898 (-) NM_010683 - 990 155095004 226519 Lamc1 Lamb2 laminin, gamma 1 MGI:99914 Mm.1249 1 1 G3|1 81.1 cM LAMC1 3915 0 ATGCCTGTGAAAGGGTCATTAGA GTTTGTGTGTCCTAGCTTGCCTT 2 11 4 1.1.1.2.4.11 BCBC-5B-0 14130681 P214694 Crlf3 Enhancer P214694 Enhancer Unique Tile chr11:79895934-79896849 (-) NM_018776 - 284 79897133 54394 Crlf3 BB164954|Creme9|Crlf2|Cytor4 cytokine receptor-like factor 3 MGI:1860086 Mm.272093 11 11 B5|11 47.21 cM CRLF3 51379 NM_001029856 + 8757 79905606 237877 C130052G03Rik 0 CTGCAGAGTTCTTCAAGGGAAAG AACTGTTGATGCCTGGCCTAC 2 11 5 1.1.1.2.5.11 BCBC-5B-0 14130700 P215534 Ccdc43 Enhancer P215534 Enhancer Unique Tile chr11:102511284-102512196 (-) NM_025918 - 1619 102513815 52715 Ccdc43 2610001E01Rik|D11Ertd707e coiled-coil domain containing 43 MGI:1289318 Mm.277638 11 11 E1|11 60.0 cM CCDC43 124808 0 GAAACTGTTATCCTTCCACACGG GGAACTCACTCTGTAGACCAGGC 2 11 6 1.1.1.2.6.11 BCBC-5B-0 14130719 P216656 Scrib Enhancer P216656 Enhancer Unique Tile chr15:75898117-75899061 (-) NM_134089 - 1132 75896985 105782 Scrib AI118201|CRIB|Crc|KIAA0147|SCRIB1|Scrb1|mKIAA0147|vartul scribbled homolog (Drosophila) MGI:2145950 Mm.25568 15 15 D3|15 43.8 cM SCRIB 23513 NM_133691;NM_028364; - 9064 75908125 67959 2410104I19Rik 0 AAGATCAAGTCTTGTACGCTGGC CCTCCTCTTCCTTCTCCTTCTTG 2 11 7 1.1.1.2.7.11 BCBC-5B-0 14130738 P217406 6230416J20Rik Enhancer P217406 Enhancer Unique Tile chr4:86078541-86079613 (-) NM_173400 - 3640 86083253 230376 6230416J20Rik 9830144E06|D4Ertd27e|mKIAA1574 RIKEN cDNA 6230416J20 gene MGI:1923389 Mm.74730 4 4 C4|4 42.6 cM FAM29A 54801 NM_178376 + 31625 86046916 68441 Rraga 0 AATTAGCTTTCCGTCCCTCTCTG CTATCTCTCCAGTGCTCCCAAAA 2 11 8 1.1.1.2.8.11 BCBC-5B-0 14130757 P218446 Alms1 ProximalPromoter P218446 ProximalPromoter Unique Tile chr6:85552196-85553098 (+) NM_145223 + 90 85553188 236266 Alms1 bbb Alstrom syndrome 1 homolog (human) MGI:1934606 Mm.246967 6 6 C3 ALMS1 7840 0 TCAGAGATCTACCTGCCTTTTCG AGACCTCGCTCACAGTACCGTAT 2 11 9 1.1.1.2.9.11 BCBC-5B-0 14130776 P219286 U2af1 ProximalPromoter P219286 ProximalPromoter Unique Tile chr17:31387352-31388386 (-) NM_024187 - 73 31387425 108121 U2af1 2010107D16Rik|35kDa U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 MGI:98884 Mm.379289 17 17 A3.3 U2AF1 7307 NM_013501 + 18274 31406660 12954 Cryaa 1 CCCTAGCACTCAGGATGGTAAGA GCCCTACTCACTTGTCTTTTTCG 2 11 10 1.1.1.2.10.11 BCBC-5B-0 14130795 P220036 Adora3 ProximalPromoter P220036 ProximalPromoter Unique Tile chr3:106031823-106032739 (+) NM_009631 + 263 106032476 11542 Adora3 A3AR|ARA3|Gpcr2|MGC118217 adenosine A3 receptor MGI:104847 Mm.235024 3 3 F2.2|3 55.7 cM ADORA3 140 NM_027025 + 9452 106042191 69296 1700001D09Rik 0 GTCCTGGGATTAAAGTGTGCATC CCAGAGAACTCACAACTTGCTCA 2 11 11 1.1.1.2.11.11 BCBC-5B-0 14130814 P221158 Gnrh1 ProximalPromoter P221158 ProximalPromoter Unique Tile chr14:66698597-66699509 (+) NM_008145 + 90 66699599 14714 Gnrh1 Gnrh|Gnrh2|LHRH|LNRH|hpg gonadotropin releasing hormone 1 MGI:95789 Mm.358309 14 14 D1|14 39.5 cM GNRH1 2796 NM_134073 + 28973 66669624 105440 Kctd9 0 CGAAGTACTCAACCTACCAACGG ACACCTGTAGTTGGTTCTGGCAT 2 11 12 1.1.1.2.12.11 BCBC-5B-0 14130833 P221908 1300013J15Rik Enhancer P221908 Enhancer Unique Tile chr11:61193024-61193943 (-) NM_026183 - 311 61194254 67473 1300013J15Rik AI036982 RIKEN cDNA 1300013J15 gene MGI:1914723 Mm.100741 11 11 B2 NM_001033542 - 33969 61159055 380701 4933429E10Rik 0 CCAGGGGTTCCTGAAAATAAAAG GCTGCTATTTTTCCTCTTTGGGT 2 11 13 1.1.1.2.13.11 BCBC-5B-0 14130852 P222748 Igsf6 Enhancer P222748 Enhancer Unique Tile chr7:120867311-120868289 (-) NM_030691 - 1632 120865679 80719 Igsf6 - immunoglobulin superfamily, member 6 MGI:1891393 Mm.160384 7 7 F2-F3 IGSF6 10261 NM_139310 + 6297 120874586 246190 Otoa 0 AGGCTGAATCCTGTCAGTCAAAG CTGGAAATCAAGGGACAGAATTG 2 11 14 1.1.1.2.14.11 BCBC-5B-0 14130871 P223870 Glipr1l2 Enhancer P223870 Enhancer Unique Tile chr10:111484274-111485271 (+) NM_026223 + 2192 111487463 67537 Glipr1l2 4921508O11Rik GLI pathogenesis-related 1 like 2 MGI:1914787 Mm.292351 10 10 D1 GLIPR1L2 144321 0 GGGTTGGGGAGATAAGTCTTGAG CATTGCTTTATCCATTGAGGGAA 2 11 15 1.1.1.2.15.11 BCBC-5B-0 14130890 P224620 Exoc8 ProximalPromoter P224620 ProximalPromoter Unique Tile chr8:127780976-127782064 (-) NM_198103 - 2819 127783795 102058 Exoc8 AI414418|EXO84|Exo84p|R74783|SEC84 exocyst complex component 8 MGI:2142527 Mm.347360; Mm.392449; Mm.347360; Mm.392449; Mm.347360; Mm.392449; Mm.347360; Mm.392449; Mm.347360; Mm.392449; Mm.347360; Mm.392449; Mm.347360; Mm.392449 8 8 E2 EXOC8 149371 NM_025615 - 31781 127749195 66523 2810004N23Rik 0 GATTATCATTGAAGCCACCAAGC CTTTTCAGTGACTTTTGGATGCC 2 11 16 1.1.1.2.16.11 BCBC-5B-0 14130909 P225742 ProximalPromoter P225742 ProximalPromoter Unique Tile chr3:78491782-78492730 (-) 0 AACAAAACAAGAATCCCCTTGGT TATGTGGTGTCACATTCCACTCC 2 11 17 1.1.1.2.17.11 BCBC-5B-0 14130928 P002451 Blank P002451 Buffer Control Negative Blank 2 11 18 1.1.1.2.18.11 BCBC-5B-0 14130947 P226094 Pdx1 P226094 Pdx1 Unique Tile chr17:11621795-11622695 (+) 0 AACAAGAAATGAAGGGGTCAGGT TAGAAACATTGGTTATGGGCAGC 2 11 19 1.1.1.2.19.11 BCBC-5B-0 14130966 P003195 Blank P003195 Buffer Control Negative Blank 2 11 20 1.1.1.2.20.11 BCBC-5B-0 14130606 P210926 Ebf3 PufferfishHuman P210926 PufferfishHuman Unique Tile chr7:137154399-137155456 (+) NM_010096 - 1611 137152788 13593 Ebf3 3110018A08Rik|KIAA4201|O/E-2|mKIAA4201 early B-cell factor 3 MGI:894289 Mm.258708 7 7 F3-F4 EBF3 253738 2 AGAAGCGATCGCCACATATTAAA AGACTCTTGGAAGGCTCTAGGGA 2 12 1 1.1.1.2.1.12 BCBC-5B-0 14130625 P212048 Zfhx1b PufferfishHuman P212048 PufferfishHuman Unique Tile chr2:44909367-44910312 (-) NM_015753;NM_001033635; - 24713 44935025 24136 Zfhx1b 9130203F04Rik|SIP1|Zfx1b|Zfxh1b|mKIAA0569 zinc finger homeobox 1b MGI:1344407 Mm.259595 2 2 C1 ZFHX1B 9839 0 AGCCTGACCAGACTCAAATGAAG CAGCTCAAACTGTGCCCTTACTT 2 12 2 1.1.1.2.2.12 BCBC-5B-0 14130644 P212798 Acadm Enhancer P212798 Enhancer Unique Tile chr3:153883710-153884773 (-) NM_007382 - 1896 153881814 11364 Acadm AU018656|MCAD acyl-Coenzyme A dehydrogenase, medium chain MGI:87867 Mm.10530 3 3 H3|3 73.6 cM ACADM 34 NM_011231 - 34265 153849445 19352 Rabggtb 0 TGTGTGTGTGTGTCTTTCATTCG TCTTTGAGCCCAAGTGAAGAGTT 2 12 3 1.1.1.2.3.12 BCBC-5B-0 14130663 P213920 Cd47 Enhancer P213920 Enhancer Unique Tile chr16:49775561-49776539 (+) NM_010581 + 205 49775356 16423 Cd47 9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp CD47 antigen (Rh-related antigen, integrin-associated signal transducer) MGI:96617 Mm.31752; Mm.390865; Mm.423539; Mm.31752; Mm.390865; Mm.423539; Mm.31752; Mm.390865; Mm.423539; Mm.31752; Mm.390865; Mm.423539; Mm.31752; Mm.390865; Mm.423539; Mm.31752; Mm.390865; Mm.423539; Mm.31752; Mm.390865; Mm.423539; Mm.31752; Mm.390865; Mm.423539; Mm.31752; Mm.390865; Mm.423539; Mm.31752; Mm.390865; Mm.423539; Mm.31752; Mm.390865; Mm.423539 16 16 B5 CD47 961 0 AGAGCAGAGAGAAGAGGAGAGGG TAGATCCCAAACACTGGCCTTTA 2 12 4 1.1.1.2.4.12 BCBC-5B-0 14130682 P214760 Plek Enhancer P214760 Enhancer Unique Tile chr11:16907489-16908390 (-) NM_019549 - 257 16908647 56193 Plek 2010300B13Rik pleckstrin MGI:1860485 Mm.98232 11 11 A2|11 6.5 cM PLEK 5341 NM_029861 + 43546 16951936 380686 1500041B16Rik 0 ATGTGTTCCCCTACACCCTTTTT GAAATCGTAGGGTCTGGGAGACT 2 12 5 1.1.1.2.5.12 BCBC-5B-0 14130701 P215510 Med19 Enhancer P215510 Enhancer Unique Tile chr2:84480917-84481911 (-) NM_025885 + 1642 84479275 381379 Med19 2410018M14Rik|DKFZp586K0524|LCMR1 mediator of RNA polymerase II transcription, subunit 19 homolog (yeast) MGI:1914234 Mm.219643 2 2 E1 MED19 219541 NM_025868 - 2031 84478886 66958 Txndc14 1 CACTTTTAATTCCAGCACTTGGG TGCTCTCTATGGACACACCAGAA 2 12 6 1.1.1.2.6.12 BCBC-5B-0 14130720 P216632 Mat2b Enhancer P216632 Enhancer Unique Tile chr11:40537980-40538930 (-) NM_134017 - 1944 40536036 108645 Mat2b 1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR methionine adenosyltransferase II, beta MGI:1913667 Mm.293771 11 11 A5 MAT2B 27430 NM_013552 - 37905 40576835 15366 Hmmr 0 AGGGTTTCTCTGTATAGCCCTGG ACAGTTGCACTCAATGTGGAGAA 2 12 7 1.1.1.2.7.12 BCBC-5B-0 14130739 P217382 Gphn Enhancer P217382 Enhancer Unique Tile chr12:79145808-79146717 (+) NM_172952 + 235 79145573 268566 Gphn 5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|MGC38765|geph gephyrin MGI:109602 Mm.341742; Mm.363753; Mm.341742; Mm.363753; Mm.341742; Mm.363753; Mm.341742; Mm.363753; Mm.341742; Mm.363753; Mm.341742; Mm.363753; Mm.341742; Mm.363753; Mm.341742; Mm.363753; Mm.341742; Mm.363753; Mm.341742; Mm.363753; Mm.341742; Mm.363753; Mm.341742; Mm.363753; Mm.341742; Mm.363753; Mm.341742; Mm.363753; Mm.341742; Mm.363753 12 12 D2 GPHN 10243 1 GGGTGTATTTTACAACCGCTGAG CAATTACACTTGAACCATGCCAA 2 12 8 1.1.1.2.8.12 BCBC-5B-0 14130758 P001455 Blank P001455 Buffer Control Negative Blank 2 12 9 1.1.1.2.9.12 BCBC-5B-0 14130777 P219262 Wnt3 ProximalPromoter P219262 ProximalPromoter Unique Tile chr11:103589351-103590283 (+) NM_009521 + 30 103590313 22415 Wnt3 Int-4|Wnt-3 wingless-related MMTV integration site 3 MGI:98955 Mm.159091 11 11 E1|11 63.0 cM WNT3 7473 NM_011719 - 23440 103565911 22412 Wnt9b 1 AGGGGAGGTAGATGTTCCTGAAG GTCCACTTGAGGTTGGAAATGAC 2 12 10 1.1.1.2.10.12 BCBC-5B-0 14130796 P220012 Krt35 ProximalPromoter P220012 ProximalPromoter Unique Tile chr11:99912306-99913248 (-) NM_016880 - 8 99912314 53617 Krt35 AI662400|Ha5|Krt1-24|Krtha5 keratin 35 MGI:1858899 Mm.37952 11 11 D KRT35 3886 NM_010665 - 8101 99904205 16670 Krt32 1 TCTCAGCCATGGTTCTAGGTCTC AGCTCTGAGAGTAGACGTCCCAA 2 12 11 1.1.1.2.11.12 BCBC-5B-0 14130815 P221134 Ifnb1 ProximalPromoter P221134 ProximalPromoter Unique Tile chr4:87993929-87994908 (-) NM_010510 - 96 87994025 15977 Ifnb1 IFNB|Ifb interferon beta 1, fibroblast MGI:107657 Mm.1245 4 4 C4|4 42.6 cM IFNB1 3456 NM_206870 - 34568 88029476 242517 LOC242517 0 TAAGCTCTTGCATGAGAGCACTG TGCTTATAGTTGATGGAGAGGGC 2 12 12 1.1.1.2.12.12 BCBC-5B-0 14130834 P221974 Olfr187 ProximalPromoter P221974 ProximalPromoter Unique Tile chr16:58978997-58980065 (-) NM_146322 - 6 58978991 258319 Olfr187 MOR183-8 olfactory receptor 187 MGI:3030021 Mm.390846 16 - NM_146321 - 8836 58970161 258318 Olfr186 0 TCTTTGTGTACTTGGCAAAAGCA TGCTGGACAGTTCTGAAATGAAA 2 12 13 1.1.1.2.13.12 BCBC-5B-0 14130853 P222724 Fancc ProximalPromoter P222724 ProximalPromoter Unique Tile chr13:63440442-63441539 (-) NM_007985 - 474 63440916 14088 Fancc BB116513|Facc Fanconi anemia, complementation group C MGI:95480 Mm.126106 13 13 B3|13 36.0 cM FANCC 2176 1 TATCCTGACTCTTCCCCAATTCA GAGATCAGTTTCCGTGTGGTCA 2 12 14 1.1.1.2.14.12 BCBC-5B-0 14130872 P223846 Pramel7 ProximalPromoter P223846 ProximalPromoter Unique Tile chr2:87298031-87298963 (-) NM_178250 - 4774 87293257 347712 Pramel7 - preferentially expressed antigen in melanoma like 7 Mm.6018 2 2 D NM_178249 + 10333 87309296 347711 Pramel6 0 TCCTGAGTGCTGAATTTCAAGGT GGTTTTGCCTCACACATCTAACC 2 12 15 1.1.1.2.15.12 BCBC-5B-0 14130891 P224596 Bmx Enhancer P224596 Enhancer Unique Tile chrX:159603605-159604690 (-) NM_009759 - 1307 159602298 12169 Bmx Etk|Etk/Bmx|Tyro8 BMX non-receptor tyrosine kinase MGI:1101778 Mm.504 X X F BMX 660 NM_027153 + 8851 159613541 69656 Pir 0 GGATGGAGATAAGGGCTAGGAGA TCATTTGGGCAGAGGTAGGAATA 2 12 16 1.1.1.2.16.12 BCBC-5B-0 14130910 P225436 Nms ProximalPromoter P225436 ProximalPromoter Unique Tile chr1:38882739-38883711 (+) NM_001011684 + 17 38883694 433292 Nms AB164466 neuromedin S MGI:3583618 Mm.333709 1 1 B NMS 129521 NM_145142 - 40033 38842706 98388 Chst10 2 AGCTGTCCTGGAACTCACTCTGT CAGTAGGAGCCTTTATTGGCAGA 2 12 17 1.1.1.2.17.12 BCBC-5B-0 14130929 P227816 Etos1 Pdx1 P227816 Pdx1 Unique Tile chr7:130598649-130599647 (+) NM_053258 - 34849 130563800 114660 Etos1 DD64 ectopic ossification 1 MGI:2149837 Mm.296952 7 7 F3 0 GCTTTCAATTCTGGTCCATGTTC GGCGAGTGAATGAAACATTTTGT 2 12 18 1.1.1.2.18.12 BCBC-5B-0 14130948 P226070 Birc5 Pdx1 P226070 Pdx1 Unique Tile chr11:117664767-117665667 (+) NM_001012273;NM_009689; + 259 117665408 11799 Birc5 AAC-11|Api4|TIAP|survivin40 baculoviral IAP repeat-containing 5 MGI:1203517 Mm.8552 11 11 E2 BIRC5 332 NM_027919 - 20869 117686536 71776 Tha1 1 TCACACCCAGGAAGCAGTATTTT CAAAGCAGCCTGGCTAACAGTA 2 12 19 1.1.1.2.19.12 BCBC-5B-0 14130967 P003099 Blank P003099 Buffer Control Negative Blank 2 12 20 1.1.1.2.20.12 BCBC-5B-0 14130607 P210902 PufferfishHuman P210902 PufferfishHuman Unique Tile chr2:72361930-72362897 (+) 0 TAGGACTGTGGTGGACAGAGACA CAAGCTGGCTTCTACAAATGCTT 2 13 1 1.1.1.2.1.13 BCBC-5B-0 14130626 P212024 PufferfishHuman P212024 PufferfishHuman Unique Tile chr2:146650126-146651073 (-) 1 TTCCTAAGCTGGAGATGGAGATG TCTGTTGAAAAGCCAGAGAAAGG 2 13 2 1.1.1.2.2.13 BCBC-5B-0 14130645 P212774 Ndufb9 ChickenHuman P212774 ChickenHuman Unique Tile chr15:58772438-58773419 (+) NM_023172 + 8528 58763910 66218 Ndufb9 1190008J14Rik NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 MGI:1913468 Mm.322294 15 15 D2 NDUFB9 4715 NM_175151 - 8625 58763813 69694 Tatdn1 0 TCCAAGCTGGTTACCCTTGATAA GCAAACGATTTTGTAGGCAATTC 2 13 3 1.1.1.2.3.13 BCBC-5B-0 14130664 P213614 Enhancer P213614 Enhancer Unique Tile chr1:55391050-55391975 (-) 0 CAGTGAGCTCATCCTTTTGGACT AGCAGAGGAGCTCATTTCCTTTT 2 13 4 1.1.1.2.4.13 BCBC-5B-0 14130683 P214736 Enhancer P214736 Enhancer Unique Tile chr4:57235918-57236845 (-) 0 CCCTGTCCCAGTCTTTCTTTCTC AGCTCAATTACTGCGGTGTCTTC 2 13 5 1.1.1.2.5.13 BCBC-5B-0 14130702 P215486 Enhancer P215486 Enhancer Unique Tile chr11:105589771-105590753 (+) 0 ATGCTTCTGGAGCAAAACTTGAC CACTTCAGAATGGGCTCTTCACT 2 13 6 1.1.1.2.6.13 BCBC-5B-0 14130721 P216608 Taf5l Enhancer P216608 Enhancer Unique Tile chr8:126891183-126892125 (-) NM_133966 - 15274 126907399 102162 Taf5l 1110005N04Rik|AI849020 TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor MGI:1919039 Mm.291777 8 8 E2 TAF5L 27097 NM_001029876 + 17437 126909562 382038 AK122209 0 GGTGGTGAGGTCTTTAGCCTTTT TTTAAAAAGAGCCGTTTCACAGC 2 13 7 1.1.1.2.7.13 BCBC-5B-0 14130740 P217448 Lmo6 Enhancer P217448 Enhancer Unique Tile chrX:6815670-6816715 (+) NM_175097 + 179 6815491 54630 Lmo6 Sfc16 LIM domain only 6 MGI:1859635 Mm.232232 X X A1.1|X 1.6 cM LMO6 4007 NM_019755 - 11541 6828256 18824 Plp2 0 GTGACCCTAGCCTTTGTCAGAGA ATTGGGGAACTAGAGTGGGTAGC 2 13 8 1.1.1.2.8.13 BCBC-5B-0 14130759 P001431 Blank P001431 Buffer Control Negative Blank 2 13 9 1.1.1.2.9.13 BCBC-5B-0 14130778 P219238 Notch2 ProximalPromoter P219238 ProximalPromoter Unique Tile chr3:98098016-98098947 (+) NM_010928 + 5 98098942 18129 Notch2 AI853703|N2 Notch gene homolog 2 (Drosophila) MGI:97364 Mm.254017 3 3 F2.2|3 45.6 cM NOTCH2 4853 1 AAGACAGATCACACCCTCCACTC TTGGCTGAAAGTTTCTGGCTG 2 13 10 1.1.1.2.10.13 BCBC-5B-0 14130797 P219988 V1rd11 ProximalPromoter P219988 ProximalPromoter Unique Tile chr7:5487586-5488564 (-) NM_207544 - 43 5487629 404285 V1rd11 - vomeronasal 1 receptor, D11 MGI:3033480 Mm.377929 7 7 A1 0 GCATCTGATCCCTTTACAGATGG GCCAACACTTCCATGGTTTTTAG 2 13 11 1.1.1.2.11.13 BCBC-5B-0 14130816 P220828 Bbs7 Enhancer P220828 Enhancer Unique Tile chr3:36808830-36809825 (-) NM_027810 - 3892 36804938 71492 Bbs7 8430406N16Rik Bardet-Biedl syndrome 7 MGI:1918742 Mm.286187 3 3 B BBS7 55212 NM_009828 - 45337 36763493 12428 Ccna2 2 GGGCTCAGTGAAGTGACAAAGTT ACAGCTCGGGAAACAAATGTAAA 2 13 12 1.1.1.2.12.13 BCBC-5B-0 14130835 P221950 D13Wsu177e Enhancer P221950 Enhancer Unique Tile chr13:54595056-54595971 (+) NM_178605 - 3701 54599672 28126 D13Wsu177e AA409471 DNA segment, Chr 13, Wayne State University 177, expressed MGI:107862 Mm.24593 13 13 B1|13 34.0 cM HSPC111 51491 NM_025933 + 3881 54599852 67044 Higd2a 0 AAGGACAGACATGTGGAGGGATA CACATACAAGTGCTGTACCTGGG 2 13 13 1.1.1.2.13.13 BCBC-5B-0 14130854 P222700 Loxl1 ProximalPromoter P222700 ProximalPromoter Unique Tile chr9:58111334-58112395 (-) NM_010729 - 11 58111323 16949 Loxl1 Loxl|MGC106801 lysyl oxidase-like 1 MGI:106096 Mm.250492 9 9 B|9 33.0 cM LOXL1 4016 0 AAGTCTCAGGGGGTAATCTTTGC TGAATGAATAAGCAACAGGCTGA 2 13 14 1.1.1.2.14.13 BCBC-5B-0 14130873 P223822 Lcat Enhancer P223822 Enhancer Unique Tile chr8:108834326-108835241 (-) NM_008490 - 1812 108832514 16816 Lcat AI046659|D8Wsu61e lecithin cholesterol acyltransferase MGI:96755 Mm.1593 8 8 D3|8 53.0 cM LCAT 3931 NM_013640 - 7091 108827235 19171 Psmb10 0 TGTTCTGGAGAGATCCTGGGTAG TCATCAGTGTCCGCTCATAGGTA 2 13 15 1.1.1.2.15.13 BCBC-5B-0 14130892 P224662 Adamts7 ProximalPromoter P224662 ProximalPromoter End Repeat Tile chr9:89960065-89961040 (+) NM_001003911 + 97 89961137 108153 Adamts7 ADAM-TS7|ADAMTS7B a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7 MGI:1347346 Mm.102141 9 9 E3.1 ADAMTS7 11173 NM_024431;NM_001039147; - 47410 89912655 21761 Morf4l1 1 GTGTGTGTGTGTGTGTGTGTGTG CTTTAAACTCTTCCCAAGGTCCG 2 13 16 1.1.1.2.16.13 BCBC-5B-0 14130911 P225412 Tpbpb ProximalPromoter P225412 ProximalPromoter Unique Tile chr13:60906420-60907330 (-) NM_026429 - 8035 60914455 116913 Tpbpb 1600012N09Rik|MGC117631 trophoblast specific protein beta MGI:2151721 Mm.30144 13 13 B2 NM_178098 - 32381 60874039 214639 4930486L24Rik 0 TAGCTCTCCCCACTGACTTCATC CAGACCCAAAAGGTAAATGCAAG 2 13 17 1.1.1.2.17.13 BCBC-5B-0 14130930 P227792 Nr0b2 Pdx1 P227792 Pdx1 Unique Tile chr4:132827444-132828428 (+) NM_011850 + 1979 132825465 23957 Nr0b2 SHP|SHP-1|Shp1 nuclear receptor subfamily 0, group B, member 2 MGI:1346344 Mm.346759 4 4 D3|4 60.0 cM NR0B2 8431 NM_010948 - 9406 132818038 18221 Nudc 0 CAATCATCTGTAATGGGACCTGA GTATCCAAAGCAAGGAAGTCCG 2 13 18 1.1.1.2.18.13 BCBC-5B-0 14130949 P226046 4930451I11Rik Pdx1 P226046 Pdx1 Unique Tile chr7:126622996-126623895 (+) NM_183131 - 352 126622644 78118 4930451I11Rik - RIKEN cDNA 4930451I11 gene MGI:1925368 Mm.107753 7 7 F3 FLJ25404 146378 NM_010069 + 14805 126638700 13446 Doc2a 0 AAAATGCCAAGCAAGTTACACAG GAGGAGGAGGAGGAGGAGAAAG 2 13 19 1.1.1.2.19.13 BCBC-5B-0 14130968 P002422 Stratagene PCR 8 P002422 Spike Control Negative Stratagene PCR 8 2 13 20 1.1.1.2.20.13 BCBC-5B-0 14130608 P210878 Ankrd15 ChickenHuman P210878 ChickenHuman Unique Tile chr19:25501005-25501962 (-) NM_181404 + 24601 25476404 107351 Ankrd15 A930031B09Rik|AU015049|AW121052|D330024H06Rik|MGC90826|mKIAA0172 ankyrin repeat domain 15 Mm.260722 19 19 B 0 TTCAAAAAGTCTGTCTGGCTTCC GTTTTGACCTTTTCCACAAGTGC 2 14 1 1.1.1.2.1.14 BCBC-5B-0 14130627 P212000 PufferfishHuman P212000 PufferfishHuman Unique Tile chr2:33838204-33839103 (-) 1 TTACAGTTACGAGGTGGGGAAGA GTTCTTCCTCCGGAGTTTACCAT 2 14 2 1.1.1.2.2.14 BCBC-5B-0 14130646 P212840 Arnt2 Enhancer P212840 Enhancer Unique Tile chr7:84284956-84285899 (-) NM_007488 - 245 84286144 11864 Arnt2 Hif-2b|mKIAA0307 aryl hydrocarbon receptor nuclear translocator 2 MGI:107188 Mm.38594 7 7 D3|7 42.5 cM ARNT2 9915 2 GCTGCTGCGTGTAACTAGATGCT TGTAGGAAGAGGAAGCCACAGTC 2 14 3 1.1.1.2.3.14 BCBC-5B-0 14130665 P213590 Zfp185 Enhancer P213590 Enhancer Unique Tile chrX:69247173-69248106 (+) NM_009549 + 2394 69250500 22673 Zfp185 P1|P1- zinc finger protein 185 MGI:108095 Mm.1161 X X A7.3|X 28.95 cM ZNF185 7739 0 GCCTAGGCCCTTTCATGTTTACT TCAGAGGTGTGAACAGGACAAAA 2 14 4 1.1.1.2.4.14 BCBC-5B-0 14130684 P214712 Samhd1 Enhancer P214712 Enhancer Unique Tile chr2:156825373-156826377 (-) NM_018851 - 209 156826586 56045 Samhd1 E330031J07Rik|Mg11 SAM domain and HD domain, 1 MGI:1927468 Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988 2 2 H2 SAMHD1 25939 0 TGCTCCTTCTTAGAGAATCGTGG CGCTTGCTAAGCACTCTACCACT 2 14 5 1.1.1.2.5.14 BCBC-5B-0 14130703 P215462 Efcab1 Enhancer P215462 Enhancer Unique Tile chr16:14815922-14816870 (+) NM_025769 + 3353 14820223 66793 Efcab1 4930449A16Rik|5430404L10Rik EF hand calcium binding domain 1 MGI:1914043 Mm.100270 16 16 B1 EFCAB1 79645 0 CTTGTCACATGTTTAGTCGCAGC TCACCTCTTCACCTCTTCACCTC 2 14 6 1.1.1.2.6.14 BCBC-5B-0 14130722 P216302 Crispld1 Enhancer P216302 Enhancer Unique Tile chr1:17713033-17714027 (+) NM_031402 + 398 17712635 83691 Crispld1 Cocoacrisp|Lcrisp1 cysteine-rich secretory protein LCCL domain containing 1 MGI:1934666 Mm.289625 1 - CRISPLD1 83690 0 TTCCCTGTTTGGAAACATCATCT CTCTTTGCTTAGCTGTCCACCAT 2 14 7 1.1.1.2.7.14 BCBC-5B-0 14130741 P217424 Rab6b Enhancer P217424 Enhancer Unique Tile chr9:102970345-102971351 (+) NM_173781 + 122 102970223 270192 Rab6b 9630015C03|AI844641|C330006L04Rik|D9Bwg0185e RAB6B, member RAS oncogene family MGI:107283 Mm.335395 9 9 F1|9 56.0 cM RAB6B 51560 1 ATTCAAGTTGGTTTTCCTAGGGG GGCAGCAAAGAAACCCTTACTCT 2 14 8 1.1.1.2.8.14 BCBC-5B-0 14130760 P001407 Blank P001407 Buffer Control Negative Blank 2 14 9 1.1.1.2.9.14 BCBC-5B-0 14130779 P219214 ProximalPromoter P219214 ProximalPromoter No Hits Tile 1 aagcagagaatctgtgtccgttc aggccttagaatcagttgctgtg 2 14 10 1.1.1.2.10.14 BCBC-5B-0 14130798 P220054 Galr1 Enhancer P220054 Enhancer Unique Tile chr18:82537128-82538156 (-) NM_008082 - 3049 82541205 14427 Galr1 Galnr1 galanin receptor 1 MGI:1096364 Mm.400029; Mm.6219; Mm.400029; Mm.6219; Mm.400029; Mm.6219; Mm.400029; Mm.6219 18 18 E3-E4|18 55.0 cM GALR1 2587 0 CCTTTGGGAACTCAGCATCTCTA CCTTAGGAATTCAACATTGCTGG 2 14 11 1.1.1.2.11.14 BCBC-5B-0 14130817 P220804 Arl5c ProximalPromoter P220804 ProximalPromoter Unique Tile chr11:97811902-97812896 (-) NM_207231 - 361 97812263 217151 Arl5c Arl12|BC065791|MGC73657 ADP-ribosylation factor-like 5C MGI:3028577 Mm.277896 11 11 D ARL5C 390790 NM_028199 - 9432 97802470 72324 Plxdc1 0 AGCTGTGAATGCCATCTAACACA GCTTACCCTGACTCCCAAAGATT 2 14 12 1.1.1.2.12.14 BCBC-5B-0 14130836 P221926 Olfr992 ProximalPromoter P221926 ProximalPromoter Unique Tile chr2:85201278-85202206 (-) NM_146865 - 92 85201370 258865 Olfr992 MOR203-1 olfactory receptor 992 MGI:3030826 Mm.389295 2 - NM_146435 - 13510 85215716 258427 Olfr993 0 TCCATGACAATAAGTCCATGGTG GAATACCACAAAGAGGATGTGCC 2 14 13 1.1.1.2.13.14 BCBC-5B-0 14130855 P222676 V1rb3 ProximalPromoter P222676 ProximalPromoter Unique Tile chr6:90189909-90190905 (-) NM_053226 - 65 90189844 113853 V1rb3 VN5 vomeronasal 1 receptor, B3 MGI:2148516 Mm.377147 6 6 D1 NM_053223 + 21589 90168320 113850 V1ra8 0 CAAAACAGTTCCATGTTTGGTGA TTATGGCCTTGTTCACAAATTCC 2 14 14 1.1.1.2.14.14 BCBC-5B-0 14130874 P223516 Bex4 ProximalPromoter P223516 ProximalPromoter Unique Tile chrX:131484377-131485278 (+) NM_212457 + 130 131485408 406217 Bex4 - brain expressed gene 4 MGI:3606746 Mm.336245 X XE3 NM_025703 - 33291 131518569 66684 Tceal8 0 TTTTTCCTTCACTTTCCGTGC AAAGTTCAGGTCCCTTCTTCACC 2 14 15 1.1.1.2.15.14 BCBC-5B-0 14130893 P224638 Olfr912 ProximalPromoter P224638 ProximalPromoter Unique Tile chr9:38330848-38331874 (+) NM_146810 + 1060 38330814 258806 Olfr912 MOR165-4 olfactory receptor 912 MGI:3030746 Mm.223233 9 - NM_001011523 + 12919 38344793 258225 Olfr913 0 TGTGGATTCACAGGTAAGTGCAG CCAAAGAGTGATTTGTCAGGACC 2 14 16 1.1.1.2.16.14 BCBC-5B-0 14130912 P225388 Lefty2 ProximalPromoter P225388 ProximalPromoter Unique Tile chr1:182728825-182729808 (+) NM_177099 + 15 182729793 320202 Lefty2 6030463A22Rik|AV214969|Ebaf|Lefta|MGC98569 Left-right determination factor 2 MGI:2443573 Mm.87078 1 1 H4 LEFTY2 7044 NM_133705 + 11175 182740983 69051 Pycr2 0 GGAGCTAGAAGAAGTAGGGCCAG AAAAGTTCTTGGGACCTAGACGG 2 14 17 1.1.1.2.17.14 BCBC-5B-0 14130931 P227768 Dok5 Pdx1 P227768 Pdx1 Unique Tile chr2:170451680-170452658 (+) NM_029761 + 28536 170423144 76829 Dok5 2700055C10Rik docking protein 5 MGI:1924079 Mm.41633 2 2 H3|2 99.0 cM DOK5 55816 0 CAAGAGGATATACCCAGAAGGGG TGCCACAGTGTAAGACTCCATTG 2 14 18 1.1.1.2.18.14 BCBC-5B-0 14130950 P226112 Pdx1 P226112 Pdx1 Unique Tile chr4:83484457-83485357 (+) 0 ACAGCTGTGTCCCTCTCTGAGTT CTATTTTCCAGACCAGGTTTGCC 2 14 19 1.1.1.2.19.14 BCBC-5B-0 14130969 P002398 Stratagene PCR 6 P002398 Spike Control Negative Stratagene PCR 6 2 14 20 1.1.1.2.20.14 BCBC-5B-0 14130609 P210854 Psmd7 ChickenHuman P210854 ChickenHuman Unique Tile chr8:110475241-110476262 (-) NM_010817 - 1349 110477611 17463 Psmd7 AW107203|Mov-34|Mov34 proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 MGI:1351511 Mm.18347 8 8 D3|8 53.5 cM PSMD7 5713 2 GAGTTCCAGGACAGCCAAGACTA CGATTCATTACCGAGTGTAAGGG 2 15 1 1.1.1.2.1.15 BCBC-5B-0 14130628 P211694 PufferfishHuman P211694 PufferfishHuman Unique Tile chr2:73871408-73872335 (+) 0 CACTATGCCAGCATCTAGCCTTT CTTATGTCCCCAGTTTCATCCAG 2 15 2 1.1.1.2.2.15 BCBC-5B-0 14130647 P212816 Akt2 Enhancer P212816 Enhancer Unique Tile chr7:27316190-27317125 (+) NM_007434 + 95 27316095 11652 Akt2 2410016A19Rik|AW554154|MGC14031|PKB|PKBbeta thymoma viral proto-oncogene 2 MGI:104874 Mm.177194 7 7 B1|7 6.5 cM AKT2 208 NM_028417 + 45558 27362683 73032 Ttc9b 1 AAGGATCCTCCATTCAGCCTTAG GGTAACCCAGGATGAATCAGACA 2 15 3 1.1.1.2.3.15 BCBC-5B-0 14130666 P213566 Vamp2 Enhancer P213566 Enhancer Unique Tile chr11:68905038-68905951 (+) NM_009497 + 316 68904722 22318 Vamp2 Syb-2|Syb2 vesicle-associated membrane protein 2 MGI:1313277 Mm.28643 11 11 B3 VAMP2 6844 NM_011065 + 9192 68915143 18626 Per1 0 GTCACTATGGCCGTCAGTCATTT ACATTCACCCTCATGATGTCCAC 2 15 4 1.1.1.2.4.15 BCBC-5B-0 14130685 P214688 Zfp326 Enhancer P214688 Enhancer Unique Tile chr5:106117072-106118125 (+) NM_018759 + 169 106116903 54367 Zfp326 5730470H14Rik|ZAN75 zinc finger protein 326 MGI:1927246 Mm.248876 5 5 E5 ZNF326 284695 1 GGTCTGTTTACCGCCTCAAGAT AACCGAAAAGTACTCCGAAAAGG 2 15 5 1.1.1.2.5.15 BCBC-5B-0 14130704 P215528 Polr3k Enhancer P215528 Enhancer Unique Tile chr2:181793946-181794858 (+) NM_025901 + 95 181793851 67005 Polr3k 12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11 polymerase (RNA) III (DNA directed) polypeptide K MGI:1914255 Mm.306482 2 2 H4 POLR3K 51728 NM_153594 + 23334 181770612 245867 Pcmtd2 0 TGCCCCTACGTCCATAATATCAC GCAGTCACTGAGGTAAGGAGGAA 2 15 6 1.1.1.2.6.15 BCBC-5B-0 14130723 P216278 Sgpp1 Enhancer P216278 Enhancer Unique Tile chr12:76652134-76653114 (-) NM_030750 - 1386 76654500 81535 Sgpp1 AI463453|SPP|SPP1|Spph1|mSPP1 sphingosine-1-phosphate phosphatase 1 MGI:2135760 Mm.280199 12 12 C3 SGPP1 81537 0 GGATTGGTTATAATGGCGTTTGA TACGGTGAGATCCTGCCTAAAAA 2 15 7 1.1.1.2.7.15 BCBC-5B-0 14130742 P217400 Zfp445 Enhancer P217400 Enhancer Unique Tile chr9:122713748-122714801 (-) NM_173364 - 152 122714649 235682 Zfp445 AW610627|ZNF168|mszf29|mszf50 zinc finger protein 445 MGI:2143340 Mm.326477 9 9 F4 ZNF445 353274 0 AAGCCAGTGCCTAGACATCAAAG ATAAGAGGGGGAGGTTAGGGAAG 2 15 8 1.1.1.2.8.15 BCBC-5B-0 14130761 P001383 Blank P001383 Buffer Control Negative Blank 2 15 9 1.1.1.2.9.15 BCBC-5B-0 14130780 P218908 Pde4b Enhancer P218908 Enhancer Unique Tile chr4:101754652-101755668 (+) NM_019840 + 1718 101752934 18578 Pde4b Dpde4|R74983|TCRB|dunce phosphodiesterase 4B, cAMP specific MGI:99557 Mm.20181; Mm.393017; Mm.20181; Mm.393017; Mm.20181; Mm.393017; Mm.20181; Mm.393017; Mm.20181; Mm.393017; Mm.20181; Mm.393017; Mm.20181; Mm.393017; Mm.20181; Mm.393017; Mm.20181; Mm.393017; Mm.20181; Mm.393017; Mm.20181; Mm.393017; Mm.20181; Mm.393017; Mm.20181; Mm.393017; Mm.20181; Mm.393017; Mm.20181; Mm.393017; Mm.20181; Mm.393017; Mm.20181; Mm.393017; Mm.20181; Mm.393017; Mm.20181; Mm.393017; Mm.20181; Mm.393017; Mm.20181; Mm.393017; Mm.20181; Mm.393017; Mm.20181; Mm.393017 4 4 C6|4 46.8 cM PDE4B 5142 0 CAAAGCCTACCAATGGTGATAGC TACATTTCATCGTGACAAAACGG 2 15 10 1.1.1.2.10.15 BCBC-5B-0 14130799 P220030 BC049702 ProximalPromoter P220030 ProximalPromoter Unique Tile chrX:18638305-18639211 (-) NM_207524 - 27 18638278 278255 BC049702 Gm720|MGC58623 cDNA sequence BC049702 MGI:3037654 Mm.303203 X X A1.3 0 CAGTAGCACAAGAGAGGGGTGTT ATACCAACTCCTCCCACACAAGA 2 15 11 1.1.1.2.11.15 BCBC-5B-0 14130818 P220780 Defb14 ProximalPromoter P220780 ProximalPromoter Unique Tile chr8:19193253-19194337 (+) NM_183026 + 4 19194333 244332 Defb14 - defensin beta 14 MGI:2675345 Mm.358923 8 8 A1.3 DEFB103A 55894 NM_019728 + 4345 19198682 56519 Defb4 0 CCCCTTTAAGATCCCTGAGAGAA TCATAGTTGACTGCTTCCCAACA 2 15 12 1.1.1.2.12.15 BCBC-5B-0 14130837 P221902 Ncf4 Enhancer P221902 Enhancer Unique Tile chr15:78069869-78070772 (+) NM_008677 + 1316 78072088 17972 Ncf4 AI451400|p40phox neutrophil cytosolic factor 4 MGI:109186 Mm.2068 15 15 E1|15 47.2 cM NCF4 4689 NM_013645 - 36263 78033606 19293 Pvalb 0 TTGTTTTATTTGGTGCTGGGACT CACTGCACAGATAGATCAGGGTG 2 15 13 1.1.1.2.13.15 BCBC-5B-0 14130856 P222742 Rassf8 ProximalPromoter P222742 ProximalPromoter Unique Tile chr6:145764483-145765439 (+) NM_027760 + 102 145765541 71323 Rassf8 5133400D11Rik|AA815821|AW123240|Hoj1|MGC144731|MGC144732|mHoj-1 Ras association (RalGDS/AF-6) domain family 8 MGI:1918573 Mm.158669 6 6 G3 RASSF8 11228 2 TGGTTGGCACTTAATATTGGGAC ACTTTACCGAGGTGACTCAGCAG 2 15 14 1.1.1.2.14.15 BCBC-5B-0 14130875 P223492 Nat1 ProximalPromoter P223492 ProximalPromoter Unique Tile chr8:70418709-70419773 (+) NM_008673 + 27 70419746 17960 Nat1 Nat-1 N-acetyltransferase 1 (arylamine N-acetyltransferase) MGI:97279 Mm.14125 8 8 B3.1|8 31.0 cM NAT2 10 NM_010874 + 4090 70423863 17961 Nat2 0 GTTTATTTAGGGCATGGAAAGGG CTCTGTGCCCCTTAAAGGAAAGT 2 15 15 1.1.1.2.15.15 BCBC-5B-0 14130894 P224614 Olfr678 ProximalPromoter P224614 ProximalPromoter Unique Tile chr7:104942287-104943254 (+) NM_146758 + 35 104943289 258753 Olfr678 MOR32-5 olfactory receptor 678 MGI:3030512 Mm.377675 7 - OR52E5 390082 NM_146358 + 12219 104930068 258355 Olfr677 0 ATCTACCACAAAATTCACCCCCT GTTTTCTGGCTTCCATTGAGAGA 2 15 16 1.1.1.2.16.15 BCBC-5B-0 14130913 P225364 Olfr119 ProximalPromoter P225364 ProximalPromoter Unique Tile chr17:37307749-37308825 (+) NM_001011830 + 101 37308724 258095 Olfr119 MOR263-7 olfactory receptor 119 MGI:2177502 Mm.329042 17 17 B1 NM_146631 + 25226 37334051 258624 Olfr120 0 TGGAGGAACATCTGGGTTCTTTA AATAGGAGGAAGCATTCTCCAGG 2 15 17 1.1.1.2.17.15 BCBC-5B-0 14130932 P227750 Slc25a17 Pdx1 P227750 Pdx1 Unique Tile chr15:81137894-81138869 (+) NM_011399 - 49133 81188002 20524 Slc25a17 34kDa|47kDa|PMP34|Pmp47 solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17 MGI:1342248 Mm.222536 15 15 E1 SLC25A17 10478 0 CAGCCAGTGACTCTTGCTATTGA GATTTGTTGGCTGAGTGTCTGTG 2 15 18 1.1.1.2.18.15 BCBC-5B-0 14130951 P226088 Rps24 Pdx1 P226088 Pdx1 Unique Tile chr14:23366179-23367079 (+) NM_011297;NM_207635;NM_207634; + 42978 23323201 20088 Rps24 MGC107549 ribosomal protein S24 MGI:98147 Mm.16775 14 14 B RPS24 6229 0 CAGACAGGAACACAAATTCCTCC CGGAACAGGTATTTCAGCAGACT 2 15 19 1.1.1.2.19.15 BCBC-5B-0 14130970 P002374 Stratagene PCR 4 P002374 Spike Control Negative Stratagene PCR 4 2 15 20 1.1.1.2.20.15 BCBC-5B-0 14130610 P210920 PufferfishHuman P210920 PufferfishHuman Unique Tile chr2:72899330-72900368 (+) 0 TTCTACAAGACTCCCCGAGACAC CTTCCAGTGTGCTGTGAAAGATG 2 16 1 1.1.1.2.1.16 BCBC-5B-0 14130629 P211670 PufferfishHuman P211670 PufferfishHuman Unique Tile chr7:36868349-36869425 (-) 1 ACAGGTTGAGGATGGACTGACAT AAGCAAAGACAAATCCGAGTCTG 2 16 2 1.1.1.2.2.16 BCBC-5B-0 14130648 P212792 Nkx2-2 ChickenHuman P212792 ChickenHuman Unique Tile chr2:146877580-146878529 (+) NM_010919 - 220 146877800 18088 Nkx2-2 Nkx-2.2|Nkx2.2|tinman NK2 transcription factor related, locus 2 (Drosophila) MGI:97347 Mm.330639 2 2 H|2 82.0 cM NKX2-2 4821 1 GGGATGGGTTTTAATTATTGGGA AGGCTTACAGAAGTTGGGCTCTT 2 16 3 1.1.1.2.3.16 BCBC-5B-0 14130667 P213542 Tuba6 Enhancer P213542 Enhancer Unique Tile chr15:98858412-98859353 (+) NM_009448 + 13 98858399 22146 Tuba6 M[a]6 tubulin, alpha 6 MGI:1095409 Mm.88212 15 15 F1 TUBA6 84790 NM_013639 + 23861 98883214 19132 Prph1 0 TTTTTCACTTCCTCAGTTTTCGC TTTCAAGACTGGCATGAGCATAA 2 16 4 1.1.1.2.4.16 BCBC-5B-0 14130686 P214382 Ahr Enhancer P214382 Enhancer Unique Tile chr12:36118552-36119565 (-) NM_013464 - 496 36120061 11622 Ahr Ah|Ahh|Ahre|In aryl-hydrocarbon receptor MGI:105043 Mm.341377 12 12 A3|12 18.0 cM AHR 196 0 TGAGTCTCAACCAATGCGTTAAA GGACAGTTGAAATTCTTAAGGGG 2 16 5 1.1.1.2.5.16 BCBC-5B-0 14130705 P215504 Ddx18 Enhancer P215504 Enhancer Unique Tile chr1:123394199-123395106 (-) NM_025860 - 357 123395463 66942 Ddx18 2310005B10Rik|MGC117904 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 MGI:1914192 Mm.391487; Mm.44219; Mm.391487; Mm.44219; Mm.391487; Mm.44219; Mm.391487; Mm.44219; Mm.391487; Mm.44219; Mm.391487; Mm.44219; Mm.391487; Mm.44219; Mm.391487; Mm.44219; Mm.391487; Mm.44219; Mm.391487; Mm.44219; Mm.391487; Mm.44219; Mm.391487; Mm.44219 1 1 E2 DDX18 8886 NM_010483 - 38188 123356011 15564 Htr5b 0 AACCTGCAGATTACCCTAGACCC GATATTTACTTCGCATTCCCACA 2 16 6 1.1.1.2.6.16 BCBC-5B-0 14130724 P216254 Dscr1l1 Enhancer P216254 Enhancer Unique Tile chr17:43417697-43418699 (+) NM_207649;NM_030598; + 1250 43416447 53901 Dscr1l1 MCIP2|ZAKI-4 Down syndrome critical region gene 1-like 1 MGI:1858219 Mm.251242 17 17 C|17 22.0 cM DSCR1L1 10231 0 CACTGAACCCACACCTGATTGTA AGGGAAATTACTGTCCCCACATT 2 16 7 1.1.1.2.7.16 BCBC-5B-0 14130743 P217376 Tnrc9 Enhancer P217376 Enhancer End Repeat Tile chr8:93235955-93237048 (-) NM_172913 - 1035 93238083 244579 Tnrc9 BC052044|C230068E13|CAGF9 trinucleotide repeat containing 9 MGI:3039593 Mm.302755 8 8 C4|8 40.0 cM TNRC9 27324 1 TGTGTGTGTGTGTGTGTGTGTGT CAGGATTCAGAAGGAGACTCCAA 2 16 8 1.1.1.2.8.16 BCBC-5B-0 14130762 P001449 Blank P001449 Buffer Control Negative Blank 2 16 9 1.1.1.2.9.16 BCBC-5B-0 14130781 P218884 Fcer2a Enhancer P218884 Enhancer Unique Tile chr8:3690389-3691418 (-) NM_013517 - 2756 3694174 14128 Fcer2a CD23|Fce2|Ly-42 Fc receptor, IgE, low affinity II, alpha polypeptide MGI:95497 Mm.1233 8 8 A1|8 0.4 cM FCER2 2208 NM_025701 + 13871 3676518 66682 Trappc5 0 TCCTATGTGGTAATGCTCTGGGT TCTGAGTCTGCCTCTCTGGACTT 2 16 10 1.1.1.2.10.16 BCBC-5B-0 14130800 P220006 Olfr1302 ProximalPromoter P220006 ProximalPromoter Unique Tile chr2:111580218-111581183 (+) NM_146889 + 32 111581151 258891 Olfr1302 MOR248-3 olfactory receptor 1302 MGI:3031136 Mm.223301 2 - NM_146887 + 25129 111555089 258889 Olfr1301 0 GGTTTTCACTGGCTATCACTTCG AGGGAGTGATTACCTCCATCCAT 2 16 11 1.1.1.2.11.16 BCBC-5B-0 14130819 P220756 Zfp120 Enhancer P220756 Enhancer Unique Tile chr2:149831613-149832523 (-) NM_023266;NM_181266; - 3494 149828119 104348 Zfp120 AI315103|E030042N05Rik|F80|MZF31 zinc finger protein 120 MGI:1345179 Mm.254018 2 2 G3 0 AAAAATACCAAAGAGAGCAGGGC CATGGGGTGATGCTCTATGAACT 2 16 12 1.1.1.2.12.16 BCBC-5B-0 14130838 P221596 2310079F23Rik Enhancer P221596 Enhancer Unique Tile chr5:35887141-35888049 (-) NM_030208 - 3872 35891921 78890 2310079F23Rik - RIKEN cDNA 2310079F23 gene MGI:1926140 Mm.98522 5 5 B1 C4orf23 152992 NM_030721 + 11851 35899900 80911 Acox3 0 GTTTGACCCAGGCTGTTTAGAGA ACTGGGGGTGGAGTAACTTCTTC 2 16 13 1.1.1.2.13.16 BCBC-5B-0 14130857 P222718 Zfp533 ProximalPromoter P222718 ProximalPromoter Unique Tile chr2:77617914-77618717 (-) NM_178723 - 259 77617655 241494 Zfp533 B830010L13Rik|C130013B13Rik zinc finger protein 533 MGI:2444734 Mm.126649 2 2 C3 ZNF533 151126 2 TGTATTTAGTAGAGCGAGCCAGG CGAGCGGACTAAAACTCTTCTTG 2 16 14 1.1.1.2.14.16 BCBC-5B-0 14130876 P223468 Fgd3 Enhancer P223468 Enhancer Unique Tile chr13:49318660-49319746 (-) NM_015759 - 1399 49321145 30938 Fgd3 5830461L01Rik|ZFYVE5 FYVE, RhoGEF and PH domain containing 3 MGI:1353657 Mm.291089 13 13 A5|13 31.0 cM FGD3 89846 NM_029791;NM_001039179;NM_001039180; + 33739 49353485 76895 Bicd2 0 TGAGAGATGAAACAGGCACAGAG CCAGAGTCAGAAAACCAGAAGGA 2 16 15 1.1.1.2.15.16 BCBC-5B-0 14130895 P224590 Lrrc61 ProximalPromoter P224590 ProximalPromoter Unique Tile chr6:48483381-48484283 (+) NM_177736 + 254 48484537 243371 Lrrc61 BC027309|MGC28139 leucine rich repeat containing 61 MGI:2652848 Mm.290764 6 6 B2.3 LRRC61 65999 NM_133764 + 16181 48467200 76252 Atp6v0e2 1 CTGCTAAGAGTTGTGCGGTTCTT GGAGCTTCTAGCTCTTTGTGCTG 2 16 16 1.1.1.2.16.16 BCBC-5B-0 14130914 P225430 9530020G05Rik ProximalPromoter P225430 ProximalPromoter Unique Tile chr6:34840918-34841941 (-) NM_001013366 - 65 34840983 101240 9530020G05Rik AI987683|AU018665 RIKEN cDNA 9530020G05 gene MGI:2141558 Mm.152120; Mm.393957; Mm.152120; Mm.393957; Mm.152120; Mm.393957; Mm.152120; Mm.393957; Mm.152120; Mm.393957; Mm.152120; Mm.393957; Mm.152120; Mm.393957 6 6 B1 HSPC049 29062 NM_009292 + 9170 34851111 20899 Stra8 0 AGAAAGAAGGCAAAAGGAACTGG GAAGAGCAGGTACTCCCGGAC 2 16 17 1.1.1.2.17.16 BCBC-5B-0 14130933 P227726 Bves Pdx1 P227726 Pdx1 Unique Tile chr10:45024000-45024972 (+) NM_024285 + 186 45024186 23828 Bves Pop1|Popdc1 blood vessel epicardial substance MGI:1346013 Mm.332793 10 10 B2|10 29.0 cM BVES 11149 NM_024286 + 46104 44977896 78977 Popdc3 1 ACTCATGCCCAAACAAGGAAG TAAGTGGCCTACACTGAACTGCC 2 16 18 1.1.1.2.18.16 BCBC-5B-0 14130952 P226064 Mid1 Pdx1 P226064 Pdx1 Unique Tile chrX:165223601-165224500 (+) NM_010797 + 167 165223768 17318 Mid1 61B3-R|DXHXS1141|Fxy|MGC60591|Trim18 midline 1 MGI:1100537 Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944 X X F5|X 74.2 cM MID1 4281 0 AAGCTGCCCTAATCCTGGTAAAG CGGACACACAGTAAAGTGCTCAA 2 16 19 1.1.1.2.19.16 BCBC-5B-0 14130971 P002350 Stratagene PCR 2 P002350 Spike Control Negative Stratagene PCR 2 2 16 20 1.1.1.2.20.16 BCBC-5B-0 14130611 P210896 2810012L14Rik PufferfishHuman P210896 PufferfishHuman Unique Tile chr5:147303939-147304851 (-) NM_029581 - 29816 147274123 76366 2810012L14Rik AI414549 RIKEN cDNA 2810012L14 gene MGI:1923616 Mm.196528 5 5 G3 MTIF3 219402 NM_025652 + 43022 147260917 66596 Gtf3a 0 GAAATATAGAAAAATGGCCCGGA GAATAACCTCACAACAATTCGGC 2 17 1 1.1.1.2.1.17 BCBC-5B-0 14130630 P211646 PufferfishHuman P211646 PufferfishHuman Unique Tile chr12:119103115-119104149 (-) 0 ATCTGCTGTAGGGGGTTTTTCTC TATATGCCATCCCTACATTTGCC 2 17 2 1.1.1.2.2.17 BCBC-5B-0 14130649 P212768 1700010A17Rik ChickenHuman P212768 ChickenHuman Unique Tile chr2:35888912-35889922 (+) NM_029309 + 17426 35871486 75495 1700010A17Rik - RIKEN cDNA 1700010A17 gene MGI:1922745 Mm.276332 2 2 B C9orf18 254956 NM_026703 - 17611 35871301 68375 Ndufa8 0 CTTCCCCCTTCTCAGGAAGAGTA TAGAGTGGCCTTCTGTTTTCAGG 2 17 3 1.1.1.2.3.17 BCBC-5B-0 14130668 P213608 Aebp2 Enhancer P213608 Enhancer Unique Tile chr6:140586897-140587817 (+) NM_009637;NM_001005605;NM_178803; + 194 140586703 11569 Aebp2 B230313N05Rik AE binding protein 2 MGI:1338038 Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453; Mm.401083; Mm.86453 6 6 G1 AEBP2 121536 0 ACTCCATTGAGCTGACTTCCTTG TTTTTAAACCTGCACGCCTGTAT 2 17 4 1.1.1.2.4.17 BCBC-5B-0 14130687 P214358 Cln8 Enhancer P214358 Enhancer Unique Tile chr8:14889941-14891027 (+) NM_012000 + 884 14889057 26889 Cln8 mnd ceroid-lipofuscinosis, neuronal 8 MGI:1349447 Mm.254027 8 8 A1.1|8 6.0 cM CLN8 2055 NM_172751 + 20692 14911719 234094 Arhgef10 0 TCTCTTAGGCCACTGAGAACCAC TTCACTGCACTCACTGGTTTTGT 2 17 5 1.1.1.2.5.17 BCBC-5B-0 14130706 P215480 Serbp1 Enhancer P215480 Enhancer Unique Tile chr6:67196976-67197897 (+) NM_025814 + 371 67196605 66870 Serbp1 1200009K13Rik|9330147J08Rik|AL022786|Pairbp1 Serpine1 mRNA binding protein 1 MGI:1914120 Mm.240490 6 6 C1 SERBP1 26135 1 TTAAGAAAGAAGGTAAAGCCGGG CCTTTTCATCCACAATAAGCCAG 2 17 6 1.1.1.2.6.17 BCBC-5B-0 14130725 P216230 Slc39a1 Enhancer P216230 Enhancer Unique Tile chr3:90333519-90334429 (-) NM_013901 + 273 90334156 30791 Slc39a1 Zip1|Zirtl solute carrier family 39 (zinc transporter), member 1 MGI:1353474 Mm.294709 3 3 F1 SLC39A1 27173 NM_030080 - 4080 90329439 78284 Creb3l4 2 CTCTTAACTACCCACTCCCCAGG TCTTTGTAGCTTTGGCTGTCCTC 2 17 7 1.1.1.2.7.17 BCBC-5B-0 14130744 P217070 Arhgap24 Enhancer P217070 Enhancer Unique Tile chr5:102719228-102720196 (+) NM_029270;NM_146161; + 1496 102721692 231532 Arhgap24 0610025G21Rik|MGC38749 Rho GTPase activating protein 24 MGI:1922647 Mm.233880 5 5 E4 ARHGAP24 83478 0 ACCCACACAAATTCTGCTCTGTT GTAACACTTGCTGCTTCCTGGAT 2 17 8 1.1.1.2.8.17 BCBC-5B-0 14130763 P001425 Blank P001425 Buffer Control Negative Blank 2 17 9 1.1.1.2.9.17 BCBC-5B-0 14130782 P218860 Upp2 Enhancer P218860 Enhancer Unique Tile chr2:58570831-58571772 (+) NM_029692 + 261 58570570 76654 Upp2 1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 MGI:1923904 Mm.200370; Mm.378432; Mm.200370; Mm.378432; Mm.200370; Mm.378432; Mm.200370; Mm.378432; Mm.200370; Mm.378432; Mm.200370; Mm.378432; Mm.200370; Mm.378432; Mm.200370; Mm.378432; Mm.200370; Mm.378432 2 2 C3 UPP2 151531 0 GTTTCAGTCAGACGAGTGTCCCT ATTTCTCCATCTCTCCTTGGCTT 2 17 10 1.1.1.2.10.17 BCBC-5B-0 14130801 P219982 AU040320 ProximalPromoter P219982 ProximalPromoter Unique Tile chr4:126255178-126256079 (+) NM_001035526;NM_133886;NM_001035525; + 6 126256073 100317 AU040320 A730047D20Rik expressed sequence AU040320 MGI:2140475 Mm.206206 4 4 D2.2 KIAA0319L 79932 NM_011986 - 427 126255652 26562 Ncdn 0 GGCTCTCAGGATAACAGAATCCA AAACATACTCTTCACGCTGAGCC 2 17 11 1.1.1.2.11.17 BCBC-5B-0 14130820 P220822 Syt6 ProximalPromoter P220822 ProximalPromoter Unique Tile chr3:103704306-103705209 (+) NM_018800 + 2 103705211 54524 Syt6 3110037A08Rik|AW048930 synaptotagmin VI MGI:1859544 Mm.88818 3 3 F3 SYT6 148281 1 GAAGTGATTAAAAGCAGAGCGGA TCCGAGTGAGTCAGAGAGAGACC 2 17 12 1.1.1.2.12.17 BCBC-5B-0 14130839 P221572 Olfr641 ProximalPromoter P221572 ProximalPromoter Unique Tile chr7:103912761-103913672 (+) NM_147072 + 54 103913618 259075 Olfr641 MOR13-3 olfactory receptor 641 MGI:3030475 Mm.377825 7 - OR51I2 390064 NM_146329 - 10501 103924173 258326 Olfr642 0 CCACCCAAGTCAGAAGAGTCAGT AGGGATACCAGTCAGGAGAAAGG 2 17 13 1.1.1.2.13.17 BCBC-5B-0 14130858 P222694 Acp5 Enhancer P222694 Enhancer Unique Tile chr9:21884719-21885752 (-) NM_007388 - 2513 21882206 11433 Acp5 TRACP|TRAP acid phosphatase 5, tartrate resistant MGI:87883 Mm.46354 9 9 A3|9 6.0 cM ACP5 54 NM_170777 - 17175 21867544 66126 Elof1 1 GAAATGGTAGCCCGTTTTTCTCT ACACACACACACACACACAGAGG 2 17 14 1.1.1.2.14.17 BCBC-5B-0 14130877 P223444 Gnrhr Enhancer P223444 Enhancer Unique Tile chr5:87270981-87271899 (-) NM_010323 - 508 87272407 14715 Gnrhr - gonadotropin releasing hormone receptor MGI:95790 Mm.26791 5 5 E1|5 44.0 cM GNRHR 2798 NM_172712 - 23677 87247304 231380 Ube1l2 0 CCTGGATTCTCAGCATTGTCTTT TGCTTGTTAGACACGTGGACAAT 2 17 15 1.1.1.2.15.17 BCBC-5B-0 14130896 P224284 Iigp2 Enhancer P224284 Enhancer Unique Tile chr11:58016578-58017532 (+) NM_019440 + 733 58015845 54396 Iigp2 AI481100|GTPI|MGC102455 interferon inducible GTPase 2 MGI:1926262 Mm.33902 11 11 B1.3 NM_018738 + 828 58015750 16145 Igtp 0 GCAGGTGTGTGTGAGACTATTGC AAGAACAGCTGAGAAGAGAGGCA 2 17 16 1.1.1.2.16.17 BCBC-5B-0 14130915 P225406 Aox3l1 ProximalPromoter P225406 ProximalPromoter Unique Tile chr1:58221908-58222838 (+) NM_001008419 + 33 58222871 213043 Aox3l1 Aoh3 aldehyde oxidase 3-like 1 MGI:3529596 Mm.425033 1 1 C1.3|1 23.2 cM 0 CACCCAAAGACTTACCCAATCTG TGGCTTTTTAAGTCTAGGGCCTC 2 17 17 1.1.1.2.17.17 BCBC-5B-0 14130934 P227702 Pdx1 P227702 Pdx1 Unique Tile chr15:32184742-32185710 (+) 0 CTCAAGGCTCCATTTCTCAAAGA ACTCTCACATCTCACACCCACAA 2 17 18 1.1.1.2.18.17 BCBC-5B-0 14130953 P226040 Pdx1 P226040 Pdx1 Unique Tile chr6:100523082-100523981 (+) 0 GTAGAAGATAGGCCAGGCCAAAG CCAGAGTTGGTGGAGAACCAG 2 17 19 1.1.1.2.19.17 BCBC-5B-0 14130972 P002416 Stratagene PCR 7 P002416 Spike Control Negative Stratagene PCR 7 2 17 20 1.1.1.2.20.17 BCBC-5B-0 14130612 P210872 D11Ertd636e ChickenHuman P210872 ChickenHuman Unique Tile chr11:113518073-113519106 (+) NM_026682;NM_029794; - 6504 113525610 52670 D11Ertd636e 0610010C04Rik|1500000C01Rik DNA segment, Chr 11, ERATO Doi 636, expressed MGI:1277182 Mm.229207 11 11 E2|11 69.0 cM NM_177777 + 14210 113503863 276852 D11Wsu47e 0 CTCGAGGAAGCACAGACAGGTAT TGTAGGACCTTGGCTGAGAAGAC 2 18 1 1.1.1.2.1.18 BCBC-5B-0 14130631 P211622 PufferfishHuman P211622 PufferfishHuman Unique Tile chr6:55508948-55509741 (+) 0 CACAGCAGGGACAGATTACCTCT CAGAACTGGTGCCAAGATTTACC 2 18 2 1.1.1.2.2.18 BCBC-5B-0 14130650 P212462 miRNA P212462 miRNA Unique Tile chr9:108425262-108426228 (+) mmu-mir-191 1 CCCTAAGGGTATTGTTTAGGCCA GGATTAGATCAGAAGGGCTGGAT 2 18 3 1.1.1.2.3.18 BCBC-5B-0 14130669 P213584 Yy1 Enhancer P213584 Enhancer Unique Tile chr12:109241923-109242842 (+) NM_009537 + 784 109241139 22632 Yy1 AW488674|NF-E1 YY1 transcription factor MGI:99150 Mm.3868; Mm.392732; Mm.3868; Mm.392732; Mm.3868; Mm.392732; Mm.3868; Mm.392732; Mm.3868; Mm.392732; Mm.3868; Mm.392732; Mm.3868; Mm.392732; Mm.3868; Mm.392732 12 12 F1|12 53.0 cM YY1 7528 NM_181328 - 40714 109283556 214663 Slc25a29 1 CTCGGGATGTTTTTGTTTTGAAG CTTTCCAGGGCTCTACCTTGAGT 2 18 4 1.1.1.2.4.18 BCBC-5B-0 14130688 P214334 Map3k1 Enhancer P214334 Enhancer Unique Tile chr13:112928321-112929221 (-) NM_011945 - 640 112929861 26401 Map3k1 MAPKKK1|MEKK1|Mekk mitogen activated protein kinase kinase kinase 1 MGI:1346872 Mm.15918 13 13 D2.2|13 60.0 cM MAP3K1 4214 1 GGAGAGTTTGTTATTGTTTGCGG GCACAAAAGGGGGTCAAATTACT 2 18 5 1.1.1.2.5.18 BCBC-5B-0 14130707 P215456 4921531G14Rik Enhancer P215456 Enhancer Unique Tile chr15:43307370-43308380 (+) NM_025736 + 26 43307344 66736 4921531G14Rik AV060620|AW209495 RIKEN cDNA 4921531G14 gene MGI:1913986 Mm.244512 15 15 B3.2 KIAA0103 9694 0 TCACTGAGCGTTACGATGTGACT TGGAAGGGTATGTGTTGACATGA 2 18 6 1.1.1.2.6.18 BCBC-5B-0 14130726 P216296 Ubqln4 Enhancer P216296 Enhancer Unique Tile chr3:88642230-88643197 (-) NM_033526 + 2540 88639690 94232 Ubqln4 A1u|AI663987|UBIN ubiquilin 4 MGI:2150152 Mm.303059 3 3 F1 UBQLN4 56893 NM_031248 - 3376 88638854 83409 Mapbpip 1 ACCTTCCTACTGAGGGTTCTTGG TGAACTCTGGACCTTTGGAAGAG 2 18 7 1.1.1.2.7.18 BCBC-5B-0 14130745 P217046 Taf6l Enhancer P217046 Enhancer Unique Tile chr19:8852140-8853150 (-) NM_146092 - 158 8853308 225895 Taf6l 2810417N14Rik|BB223262|C530024J06Rik|MGC41377|PAF65A TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor MGI:2444957 Mm.220886 19 19 A TAF6L 10629 NM_026325 - 10628 8841512 67706 1810059G22Rik 0 GTTCTGTAATCCCTGATCTCCCC CACAATAGACCAGGTCAGTACGC 2 18 8 1.1.1.2.8.18 BCBC-5B-0 14130764 P001401 Blank P001401 Buffer Control Negative Blank 2 18 9 1.1.1.2.9.18 BCBC-5B-0 14130783 P218836 Olfr1104 ProximalPromoter P218836 ProximalPromoter Unique Tile chr2:86823444-86824360 (-) NM_146767 - 63 86823381 258763 Olfr1104 MOR207-1 olfactory receptor 1104 MGI:3030938 Mm.377679 2 - NM_001011825 - 10698 86835058 258085 Olfr1105 0 TGAACAATGAACTTGCTTCCTGA CAAAAGATTTGACAACCAGGGAC 2 18 10 1.1.1.2.10.18 BCBC-5B-0 14130802 P219676 Krtap8-2 ProximalPromoter P219676 ProximalPromoter Unique Tile chr16:88785255-88786257 (-) NM_010676 - 54 88785309 16704 Krtap8-2 - keratin associated protein 8-2 MGI:1330295 Mm.3503 16 16 C3.3 NM_130873 - 11307 88773948 170654 Krtap16-4 0 GAAAGGAAGCCAAAGAAGAAAGC TCCGTAGTAGCTGCCGTAGTAGC 2 18 11 1.1.1.2.11.18 BCBC-5B-0 14130821 P220798 Olfr13 ProximalPromoter P220798 ProximalPromoter Unique Tile chr6:43102694-43103643 (+) NM_146652 + 49 43103594 18310 Olfr13 K7|MOR261-6 olfactory receptor 13 MGI:104812 Mm.250444 6 - OR2A7 401427 NM_146296 + 6028 43096666 258293 Olfr437 1 AGGCAGTGGCAAAATTTTCTGTA GAAATCCCAGGAGGATGAACTCT 2 18 12 1.1.1.2.12.18 BCBC-5B-0 14130840 P221548 Pik3r3 ProximalPromoter P221548 ProximalPromoter Unique Tile chr4:115718710-115719626 (+) NM_181585 + 219 115719845 18710 Pik3r3 AA414954|p55pik phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55) MGI:109277 Mm.253819 4 4 D1 PIK3R3 8503 1 AGCAAGGTGAAGAGGTTTGTGAG TGCCCGAGTAGTAAAGGTAACCA 2 18 13 1.1.1.2.13.18 BCBC-5B-0 14130859 P222670 Syt9 Enhancer P222670 Enhancer Unique Tile chr7:107162266-107163175 (+) NM_021889 + 300 107161966 60510 Syt9 Syt5|Sytv synaptotagmin IX MGI:1926373 Mm.302793 7 7 F2 SYT9 143425 1 CTGCCAAGATTTCATCTACCACC AGTCCTCCAGCCTAGAAGATGCT 2 18 14 1.1.1.2.14.18 BCBC-5B-0 14130878 P223510 9130023D20Rik ProximalPromoter P223510 ProximalPromoter Unique Tile chr13:113780620-113781554 (+) NM_178746 + 89 113781643 268706 9130023D20Rik 6720411P22Rik|9430067K09Rik|A730092C09 RIKEN cDNA 9130023D20 gene MGI:1918839 Mm.259799 13 13 D2.2 FLJ90709 153129 NM_010029 - 7441 113773179 13206 Ddx4 1 TTGAGAGCAGAGTTTGGAAGACC GAAACTACAACTCCCAGAGGGCT 2 18 15 1.1.1.2.15.18 BCBC-5B-0 14130897 P224260 Ubl7 Enhancer P224260 Enhancer Unique Tile chr9:57709131-57710077 (+) NM_027086 + 9 57709122 69459 Ubl7 2300004C15Rik ubiquitin-like 7 (bone marrow stromal cell-derived) MGI:1916709 Mm.41735 9 9 C NM_011352 + 28194 57738271 20361 Sema7a 0 GCAAGAGGACCAGAGTGAGTGTT CCATTTATTCTGACGCCTACCAG 2 18 16 1.1.1.2.16.18 BCBC-5B-0 14130916 P225382 Prdm4 ProximalPromoter P225382 ProximalPromoter Unique Tile chr10:85346707-85347714 (-) NM_181650 - 37 85346744 72843 Prdm4 1700031E19Rik|2810470D21Rik|AW552272|SC-1 PR domain containing 4 MGI:1920093 Mm.25307 10 10 C1 PRDM4 11108 NM_145422 - 39868 85387582 28088 D10Wsu52e 1 ACGGTGATTCAGTGCAACTCTTT TACAGCTCTCCTAACATTTCCCG 2 18 17 1.1.1.2.17.18 BCBC-5B-0 14130935 P227678 Asb14 Pdx1 P227678 Pdx1 Unique Tile chr14:25699599-25700565 (+) NM_080856 + 29561 25730126 142687 Asb14 Asb-14 ankyrin repeat and SOCS box-containing protein 14 MGI:2655107 Mm.138259 14 14 A3 ASB14 142686 0 CTCCGGCTAAATCTCCTTCAATC CATTCTTCCTTGGGTCAGAGATG 2 18 18 1.1.1.2.18.18 BCBC-5B-0 14130954 P227174 Pdx1 P227174 Pdx1 Unique Tile chr11:118560601-118561533 (+) 2 GTGAAACTTCAGGTCCTCAGAGC GCTGCAATCACTCTCAGCAAGTA 2 18 19 1.1.1.2.19.18 BCBC-5B-0 14130973 P002392 Stratagene PCR 5 P002392 Spike Control Negative Stratagene PCR 5 2 18 20 1.1.1.2.20.18 BCBC-5B-0 14130613 P210848 Slc25a4 ChickenHuman P210848 ChickenHuman Unique Tile chr8:47728876-47729807 (+) NM_007450 - 19029 47709847 11739 Slc25a4 AU019225|Ant1 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 MGI:1353495 Mm.16228 8 8 B1.1|8 26.0 cM SLC25A4 291 0 GGATCAGCAAGCAGGAGTATGAT AGGGCATCATCTTGAGTGAGGTA 2 19 1 1.1.1.2.1.19 BCBC-5B-0 14130632 P211688 PufferfishHuman P211688 PufferfishHuman Unique Tile chr11:24385102-24386015 (-) 0 CCAATGCTATGGGATATGGAAAA AATACCCCCTGCAATGAGAGAAT 2 19 2 1.1.1.2.2.19 BCBC-5B-0 14130651 P212438 miRNA P212438 miRNA Unique Tile chrX:6407877-6408776 (-) mmu-mir-188 0 TGAATTCAAATGACCCCATAAGC GGAAAGGCTTAACCAAGGAGAGA 2 19 3 1.1.1.2.3.19 BCBC-5B-0 14130670 P213560 Unc5c Enhancer P213560 Enhancer Unique Tile chr3:141398851-141399762 (+) NM_009472 + 3188 141402950 22253 Unc5c 6030473H24|AI047720|B130051O18Rik|Unc5h3|rcm unc-5 homolog C (C. elegans) MGI:1095412 Mm.24430 3 3 H1|3 68.5 cM UNC5C 8633 0 TGCGTGAGTTCTACCAGTCATGT TGCTCACTTTACATATCTGCCCA 2 19 4 1.1.1.2.4.19 BCBC-5B-0 14130689 P214310 Odz3 Enhancer P214310 Enhancer Unique Tile chr8:50169352-50170291 (-) NM_011857 - 3216 50173507 23965 Odz3 2610100B16Rik|Odz1|Ten-m3|mKIAA1455 odd Oz/ten-m homolog 3 (Drosophila) MGI:1345183 Mm.42191 8 8 B2 ODZ3 55714 0 CAGCTCCAACGTAGTTCGCTAAT GACAGCTTTAGCAGGATGGAAAA 2 19 5 1.1.1.2.5.19 BCBC-5B-0 14130708 P215150 Rpl38 Enhancer P215150 Enhancer Unique Tile chr11:114480043-114480966 (+) NM_023372 + 3647 114484613 67671 Rpl38 0610025G13Rik ribosomal protein L38 MGI:1914921 Mm.238817; Mm.371629; Mm.238817; Mm.371629; Mm.238817; Mm.371629; Mm.238817; Mm.371629; Mm.238817; Mm.371629; Mm.238817; Mm.371629; Mm.238817; Mm.371629; Mm.238817; Mm.371629; Mm.238817; Mm.371629; Mm.238817; Mm.371629; Mm.238817; Mm.371629; Mm.238817; Mm.371629; Mm.238817; Mm.371629; Mm.238817; Mm.371629; Mm.238817; Mm.371629 11 11 G1 RPL38 6169 NM_053273 + 10591 114491557 117160 Ttyh2 0 CCCCCTTTAGCAGCTCTTATCAT TTCCTCTTGAGACACAGGTTTCC 2 19 6 1.1.1.2.6.19 BCBC-5B-0 14130727 P216272 Pum1 Enhancer P216272 Enhancer Unique Tile chr4:129935454-129936503 (+) NM_030722 + 7 129935461 80912 Pum1 AA517475|Pumm|mKIAA0099 pumilio 1 (Drosophila) MGI:1931749 Mm.34701; Mm.428911; Mm.34701; Mm.428911; Mm.34701; Mm.428911; Mm.34701; Mm.428911; Mm.34701; Mm.428911; Mm.34701; Mm.428911; Mm.34701; Mm.428911; Mm.34701; Mm.428911; Mm.34701; Mm.428911; Mm.34701; Mm.428911; Mm.34701; Mm.428911; Mm.34701; Mm.428911; Mm.34701; Mm.428911; Mm.34701; Mm.428911; Mm.34701; Mm.428911 4 4 D2.3 PUM1 9698 1 TGTTGTCGGAGTGAAAGGTAAGG TGGTCATCTATGTGGGAGTTCCT 2 19 7 1.1.1.2.7.19 BCBC-5B-0 14130746 P217022 Samd14 Enhancer P217022 Enhancer Unique Tile chr11:94821476-94822417 (+) NM_146025;NM_178049; + 3551 94825968 217125 Samd14 AI839049|AI854782|BC034054|MGC31049 sterile alpha motif domain containing 14 MGI:2384945 Mm.297199 11 11 D SAMD14 201191 NM_172261 + 14175 94807301 217124 Ppp1r9b 1 ATAATCCCCTCCCATTATCCTCA CTCCAGTGAAAACGTTGGAAAAC 2 19 8 1.1.1.2.8.19 BCBC-5B-0 14130765 P218144 Abce1 ChickenHuman P218144 ChickenHuman Unique Tile chr8:82604220-82605204 (+) NM_015751 - 2483 82607687 24015 Abce1 C79080|Oabp|RLI|RNS41|Rnaseli ATP-binding cassette, sub-family E (OABP), member 1 MGI:1195458 Mm.5831 8 8 C ABCE1 6059 NM_026904 + 2687 82607891 68999 Anapc10 0 CCTTCCCCTTGACTCACCTATCT GAATTCATGATTTTGGTGTGGGT 2 19 9 1.1.1.2.9.19 BCBC-5B-0 14130784 P218902 Enhancer P218902 Enhancer No Hits Tile 0 tttattataaggtgtgcccacgg tgcctagatttccagatttgcat 2 19 10 1.1.1.2.10.19 BCBC-5B-0 14130803 P219652 Inpp5b Enhancer P219652 Enhancer Unique Tile chr4:124240748-124241779 (+) NM_008385 + 2402 124244181 16330 Inpp5b 75kDa|AW260155|INPP5P inositol polyphosphate-5-phosphatase B MGI:103257 Mm.296202 4 4 D2|4 56.0 cM INPP5B 3633 NM_026031 - 44861 124195887 67205 Utp11l 0 TCTCTGAGCATCACAGAGGACAG TCTCTAAAGACACAGCTCCAGGG 2 19 11 1.1.1.2.11.19 BCBC-5B-0 14130822 P220774 Olfr1179 ProximalPromoter P220774 ProximalPromoter Unique Tile chr2:88203789-88204852 (-) NM_146917 - 18 88203771 258919 Olfr1179 MOR225-2 olfactory receptor 1179 MGI:3031013 2 2 D NM_146918 - 8643 88213495 258920 Olfr1180 0 GGAAGTTTCCTAAGGGTGGAAGA ATTCAATGGCATTAGCTGAAAGG 2 19 12 1.1.1.2.12.19 BCBC-5B-0 14130841 P221524 Olfr1359; Olfr1360 ProximalPromoter P221524 ProximalPromoter Unique Tile chr13:21682459-21683484 (-) NM_146543;NM_001011820; - 52 21682407 258067; 258536 Olfr1359; Olfr1360 MOR256-35|MOR256-60; MOR256-10|MOR256-35 olfactory receptor 1359; olfactory receptor 1360 MGI:3031193; MGI:3031194 Mm.372674; Mm.223076 13 13 A3.1; - OR2B2; 81697; NM_146541 - 15673 21666786 258534 Olfr1361 2 TATCTACACAAAGCATCCGAGCA TGGACATGCTTATTGGATGTGTC 2 19 13 1.1.1.2.13.19 BCBC-5B-0 14130860 P222364 Slco1b2 ProximalPromoter P222364 ProximalPromoter Unique Tile chr6:141613591-141614493 (+) NM_178235;NM_020495; + 22555 141591938 28253 Slco1b2 OATP-C|OATP2|Oatp4|Slc21a10|Slc21a6|lst-1|mlst-1 solute carrier organic anion transporter family, member 1b2 MGI:1351899 Mm.272223 6 6 G1|6 67.0 cM SLCO1B3 28234 0 AATCAGATGGTGAACTCATGGCT AACGACGACAATGACATGACAAC 2 19 14 1.1.1.2.14.19 BCBC-5B-0 14130879 P223486 Dsg1c ProximalPromoter P223486 ProximalPromoter Unique Tile chr18:20364871-20365879 (+) NM_181680 + 24470 20390349 211924 Dsg1c 9330156N18|Dsg1gamma|Dsg6|dsg1g desmoglein 1 gamma MGI:2664358 Mm.391118 18 18 A2|18 7.0 cM 0 CAACCAGCCTCTTGTCTGTCTTT AATGTCAATGATCACAGAGGGGT 2 19 15 1.1.1.2.15.19 BCBC-5B-0 14130898 P224236 2410024A21Rik Enhancer P224236 Enhancer Unique Tile chr12:106049312-106050314 (-) NM_029654 - 1433 106047879 76559 2410024A21Rik AI047755|AI503411|AW558123|KIAA4067|mKIAA4067 RIKEN cDNA 2410024A21 gene MGI:1923809 Mm.114362 12 12 E C14orf103 55102 NM_176899 - 35936 106086250 319361 C630028L02Rik 0 GGTTCTGTCCTTTGTGAAAATGC ATAGGAAATTCACTCGCCAAACA 2 19 16 1.1.1.2.16.19 BCBC-5B-0 14130917 P225358 1700073E17Rik ProximalPromoter P225358 ProximalPromoter Unique Tile chr6:145343808-145344774 (+) NM_001001987 + 10 145344784 381827 1700073E17Rik - RIKEN cDNA 1700073E17 gene MGI:1920734 Mm.179075 6 6 G3 NM_028742 - 46369 145391143 74071 4933403M22Rik 0 AACAGGGTGCTCTAAGGTGTGAC AAACTGTGTGGGCTGTTCTGTTT 2 19 17 1.1.1.2.17.19 BCBC-5B-0 14130936 P227744 Pdx1 P227744 Pdx1 Unique Tile chr16:50664918-50665892 (+) 0 GTGAATTTGGAAGGAAAGTGGTG TCTGACGAGAAAATGAACCAACA 2 19 18 1.1.1.2.18.19 BCBC-5B-0 14130955 P227150 Pdx1 P227150 Pdx1 Unique Tile chr11:61814602-61815533 (+) 0 GCATGCTTCTTGCTCCTAGTCAT GGTTTCATCTAGCCAGAAATGGA 2 19 19 1.1.1.2.19.19 BCBC-5B-0 14130974 P002368 Stratagene PCR 3 P002368 Spike Control Negative Stratagene PCR 3 2 19 20 1.1.1.2.20.19 BCBC-5B-0 14130975 P211844 Ebf3 PufferfishHuman P211844 PufferfishHuman Unique Tile chr7:137140476-137141554 (-) NM_010096 - 11203 137152757 13593 Ebf3 3110018A08Rik|KIAA4201|O/E-2|mKIAA4201 early B-cell factor 3 MGI:894289 Mm.258708 7 7 F3-F4 EBF3 253738 0 TCACTTCCTGTCACAAAGGTCAA TGGTGAACTTTTTGCCTCTCTTC 3 1 1 1.1.1.3.1.1 BCBC-5B-0 14130994 P212594 miRNA P212594 miRNA Unique Tile chr11:75274805-75275709 (+) mmu-mir-22 0 GGTGGTGGTGGCAGTAGTAGAAC AGCTGCCCTATTCTCCATTATCC 3 1 2 1.1.1.3.2.1 BCBC-5B-0 14131013 P213716 BC021438 Enhancer P213716 Enhancer Unique Tile chr9:21037721-21038800 (-) NM_145416 - 447 21038353 215194 BC021438 MGC29361 cDNA sequence BC021438 MGI:2384899 Mm.290690 9 9 A3 FLJ12949 65095 NM_009878 - 2621 21041421 12581 Cdkn2d 0 AGATTTAGGAGTCTGGAATGGGG CAATACATGGGGTTAGGGTCAGA 3 1 3 1.1.1.3.3.1 BCBC-5B-0 14131032 P214556 Ddc Enhancer P214556 Enhancer Unique Tile chr11:11784337-11785278 (-) NM_016672 - 5126 11790404 13195 Ddc Aadc dopa decarboxylase MGI:94876 Mm.12906 11 11 A1-A4|11 7.0 cM DDC 1644 0 AGGACAACAGTGGAACAGAAAGC TTGCTTATTCACTGCATCTTCCA 3 1 4 1.1.1.3.4.1 BCBC-5B-0 14131051 P215306 Gga3 Enhancer P215306 Enhancer Unique Tile chr11:115416161-115417119 (+) NM_173048 - 2856 115419975 260302 Gga3 C230037M19Rik|mKIAA0154 golgi associated, gamma adaptin ear containing, ARF binding protein 3 MGI:2384159 Mm.119479 11 11 E2 GGA3 23163 NM_025305 + 3121 115420240 50529 Mrps7 0 CGTAACCACTGCTAGCCTCAACT AGACGGTTTCCAAAAACAGACAA 3 1 5 1.1.1.3.5.1 BCBC-5B-0 14131070 P216428 Timp4 Enhancer P216428 Enhancer Unique Tile chr6:115219566-115220521 (-) NM_080639 - 2098 115217468 110595 Timp4 TIMP-4 tissue inhibitor of metalloproteinase 4 MGI:109125 Mm.255607 6 6 E3|6 46.0 cM TIMP4 7079 0 AGAGGCATCCTTTCCTTGCTACT CCCCTGGAGCTGGAGTTATAGAT 3 1 6 1.1.1.3.6.1 BCBC-5B-0 14131089 P217178 Rps6ka5 Enhancer P217178 Enhancer Unique Tile chr12:101124116-101125047 (-) NM_153587 - 1031 101126078 73086 Rps6ka5 3110005L17Rik|6330404E13Rik|AI854034|MGC28385|MSK1|MSPK1|RLPK ribosomal protein S6 kinase, polypeptide 5 MGI:1920336 Mm.220417; Mm.392855; Mm.220417; Mm.392855; Mm.220417; Mm.392855; Mm.220417; Mm.392855; Mm.220417; Mm.392855; Mm.220417; Mm.392855; Mm.220417; Mm.392855; Mm.220417; Mm.392855; Mm.220417; Mm.392855; Mm.220417; Mm.392855; Mm.220417; Mm.392855; Mm.220417; Mm.392855; Mm.220417; Mm.392855; Mm.220417; Mm.392855; Mm.220417; Mm.392855; Mm.220417; Mm.392855 12 12 E RPS6KA5 9252 0 GGAGTCAGGTCTCCCCTTACACT TGTCCACGTGCTTAGCAATACAT 3 1 7 1.1.1.3.7.1 BCBC-5B-0 14131108 P218018 Pax6 ChickenHuman P218018 ChickenHuman Unique Tile chr2:105489030-105489987 (-) NM_013627 + 11739 105477291 18508 Pax6 1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey paired box gene 6 MGI:97490 Mm.3608 2 2 E3|2 58.0 cM PAX6 5080 0 CTCCACGCTCAGGCACTACTTAT ACTCTATTCCAGCCCCAATTCTC 3 1 8 1.1.1.3.8.1 BCBC-5B-0 14131127 P219058 Tph1 Enhancer P219058 Enhancer Unique Tile chr7:46544593-46545534 (-) NM_009414 - 4014 46540579 21990 Tph1 Tph tryptophan hydroxylase 1 MGI:98796 Mm.248684 7 7 B3|7 23.5 cM TPH1 7166 NM_013789 - 36761 46507832 27414 Sergef 0 TTTTTCCATGCTTAGCTCTCTGG TGTCTTGAATCTTACAGAGCCCC 3 1 9 1.1.1.3.9.1 BCBC-5B-0 14131146 P219808 Hdac10 ProximalPromoter P219808 ProximalPromoter Unique Tile chr15:88956411-88957370 (-) NM_199198 - 18 88956393 170787 Hdac10 AW548891 histone deacetylase 10 MGI:2158340 Mm.203954 15 15 E3 HDAC10 83933 NM_013871 - 11006 88968376 29857 Mapk12 0 GAACTGGAGACAAGGCTGGACTA GAGAACCGCTGGAAACTGAACTA 3 1 10 1.1.1.3.10.1 BCBC-5B-0 14131165 P220930 Stk32c Enhancer P220930 Enhancer Unique Tile chr7:139038272-139039252 (-) NM_021302 - 533 139039785 57740 Stk32c PKE|Pkek|YANK3 serine/threonine kinase 32C MGI:2385336 Mm.65336 7 7 F4 STK32C 282974 NM_027164 + 25055 139064307 76612 Lrrc27 0 AACTATTGGGCCACGACTGAAG ATGTACCTGATGCAGATGGACCT 3 1 11 1.1.1.3.11.1 BCBC-5B-0 14131184 P221770 Olfr894 ProximalPromoter P221770 ProximalPromoter Unique Tile chr9:37968550-37969467 (+) NM_146868 + 72 37969395 258868 Olfr894 MOR170-5 olfactory receptor 894 MGI:3030728 Mm.377728 9 - NM_146336 + 8925 37959625 258333 Olfr893 0 GAATAGACACTCCTGCTGGGAAA AGGTTGGTCTGTCAATCCCATAA 3 1 12 1.1.1.3.12.1 BCBC-5B-0 14131203 P222520 Chia Enhancer P222520 Enhancer Unique Tile chr3:106241445-106242420 (+) NM_023186 + 3 106241442 81600 Chia 2200003E03Rik|AMCase|YNL chitinase, acidic MGI:1932052 Mm.46418 3 3 F3 CHIA 27159 0 CCAAGCTACTTCTCGTCACAGGT ATTCACAGTGCTCAGTGACCAAA 3 1 13 1.1.1.3.13.1 BCBC-5B-0 14131222 P223642 Trh Enhancer P223642 Enhancer Unique Tile chr6:92208974-92210068 (-) NM_009426 - 72 92210140 22044 Trh AI324969|AL022609 thyrotropin releasing hormone MGI:98823 Mm.1363 6 6 D1|6 40.0 cM TRH 7200 NM_030081 - 28659 92180315 78287 Zfyve20 0 GAGTCTCCACCTTGCAGGTAATG AGGGATAGGGACCATTGTGAAAT 3 1 14 1.1.1.3.14.1 BCBC-5B-0 14131241 P224392 Amh ProximalPromoter P224392 ProximalPromoter Unique Tile chr10:80207358-80208410 (+) NM_007445 + 34 80208376 11705 Amh MIS anti-Mullerian hormone MGI:88006 Mm.376094 10 10 C1|10 43.0 cM AMH 268 NM_013651 + 5464 80201894 20222 Sf3a2 1 CCCAGTAGTACACCCACCAACAT GCAGTACCAGTGGAGAGAGGTGT 3 1 15 1.1.1.3.15.1 BCBC-5B-0 14131260 P225232 Olfr605 ProximalPromoter P225232 ProximalPromoter Unique Tile chr7:103316957-103317946 (-) NM_001011854 - 15 103316942 258156 Olfr605 MOR202-22P|MOR24-5 olfactory receptor 605 MGI:3030439 Mm.377364 7 7 E3 NM_147094 + 7213 103325159 259098 Olfr606 0 CTGGGTGATGTTTTGTTTTCCAT CTGTTTGTGGCTGAAGTCCTCTT 3 1 16 1.1.1.3.16.1 BCBC-5B-0 14131279 P226460 BC051665 Pdx1 P226460 Pdx1 Unique Tile chr13:60776273-60777181 (+) NM_199148 - 18791 60795972 218275 BC051665 MGC60730 cDNA sequence BC051665 MGI:2682300 Mm.222427 13 13 B2 NM_027344 - 35286 60812467 70202 2310051M13Rik 0 TGGTACATTTTTGTCAAGAGGCA ATTTGCACTCAGGTATCCATGCT 3 1 17 1.1.1.3.17.1 BCBC-5B-0 14131298 P226250 Pdx1 P226250 Pdx1 Unique Tile chr1:184480718-184481621 (+) 0 CCACACATGGGTAGGAAATTGAT AAAGGTATTTCTCAGCTGCTTGG 3 1 18 1.1.1.3.18.1 BCBC-5B-0 14131317 P002332 Stratagene PCR 1 P002332 Spike Control Negative Stratagene PCR 1 3 1 19 1.1.1.3.19.1 BCBC-5B-0 14131336 P003399 Cy3 Anchor P003399 Anchor Control Positive Cy3 Anchor 3 1 20 1.1.1.3.20.1 BCBC-5B-0 14130976 P211820 PufferfishHuman P211820 PufferfishHuman Unique Tile chr1:41050700-41051630 (-) 0 AACCCCCAGATTTTGCTAAAAAG AGGTCAAATGTTGCGATTCCTAA 3 2 1 1.1.1.3.1.2 BCBC-5B-0 14130995 P212570 miRNA P212570 miRNA Unique Tile chr4:40915508-40916455 (-) mmu-mir-207 0 TCTCCAAAGTTCACCAGAGGAAG GCATGCCTTAAAAATCAAACTGG 3 2 2 1.1.1.3.2.2 BCBC-5B-0 14131014 P213410 Sat1 Enhancer P213410 Enhancer Unique Tile chrX:150555317-150556348 (-) NM_009121 - 777 150557125 20229 Sat1 AA617398|SSAT|Sat spermidine/spermine N1-acetyl transferase 1 MGI:98233 Mm.2734 X X F3-F4|X 65.2 cM SAT 6303 NM_019736 + 46877 150603225 56360 Acot9 0 AGAAGTGCCTAAAGAGCACTGGA GGTCAGAAGACCAGACCAAAAGA 3 2 3 1.1.1.3.3.2 BCBC-5B-0 14131033 P214532 Slit1 Enhancer P214532 Enhancer Unique Tile chr19:41799107-41800080 (-) NM_015748 - 1940 41797167 20562 Slit1 Slil1|mKIAA0813 slit homolog 1 (Drosophila) MGI:1315203 Mm.40322 19 19 C3 SLIT1 6585 0 GCATGCTATCACTGTTTTTGCAG CTATGTACGCCTCCAACCTTCTG 3 2 4 1.1.1.3.4.2 BCBC-5B-0 14131052 P215282 Luzp1 Enhancer P215282 Enhancer Unique Tile chr4:135795069-135795989 (+) NM_024452 + 1602 135793467 269593 Luzp1 2700072H04Rik|AI266952|Luzp|mFLJ00226 leucine zipper protein 1 MGI:107629 Mm.92659 4 4 D3 LUZP1 7798 0 AACTGCAAAGAAGTTTGCTGACC CCCTACTGGGCATAATGTCACTC 3 2 5 1.1.1.3.5.2 BCBC-5B-0 14131071 P216404 Tirap Enhancer P216404 Enhancer Unique Tile chr9:34952194-34953176 (-) NM_054096 - 2649 34949545 117149 Tirap AA407980|C130027E04Rik|Mal|Tlr4ap|wyatt toll-interleukin 1 receptor (TIR) domain-containing adaptor protein MGI:2152213 Mm.23987; Mm.392992; Mm.23987; Mm.392992; Mm.23987; Mm.392992; Mm.23987; Mm.392992; Mm.23987; Mm.392992; Mm.23987; Mm.392992; Mm.23987; Mm.392992; Mm.23987; Mm.392992; Mm.23987; Mm.392992; Mm.23987; Mm.392992; Mm.23987; Mm.392992; Mm.23987; Mm.392992; Mm.23987; Mm.392992; Mm.23987; Mm.392992 9 9 A5.3 TIRAP 114609 NM_172291 - 7420 34960596 235169 Foxred1 0 GGGCAGTCTGAGTGTAGACAGGT GGAAGAGAGCCACTACAGGATGA 3 2 6 1.1.1.3.6.2 BCBC-5B-0 14131090 P217244 Cdc42se1 Enhancer P217244 Enhancer Unique Tile chr3:95314840-95315814 (+) NM_172395;NM_001038708; + 485 95314355 57912 Cdc42se1 1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1 CDC42 small effector 1 MGI:1889510 Mm.28189 3 3 F2.1 CDC42SE1 56882 NM_019914 - 1255 95313585 56772 Mllt11 1 CCCACACGATTCTCAAGTCTCTT GGAAAGTCAGTCACAAGGCTCAT 3 2 7 1.1.1.3.7.2 BCBC-5B-0 14131109 P217994 Slc35c1 Enhancer P217994 Enhancer Unique Tile chr2:92256367-92257327 (-) NM_145832;NM_211358; - 2731 92260058 228368 Slc35c1 E430007K15Rik|fuct1 solute carrier family 35, member C1 MGI:2443301 Mm.273990 2 2 E1 SLC35C1 55343 NM_009963 - 21500 92234867 12953 Cry2 0 AGTACAGGCTGGGAACACACATT TTTCACCAATACCCTCCACATTC 3 2 8 1.1.1.3.8.2 BCBC-5B-0 14131128 P219034 Enhancer P219034 Enhancer No Hits Tile 1 ttaggcttaggaaaggggttctg gtggtgggctcctcttacttctt 3 2 9 1.1.1.3.9.2 BCBC-5B-0 14131147 P219784 Ccr3 Enhancer P219784 Enhancer Unique Tile chr9:123865965-123866899 (+) NM_009914 + 3998 123870897 12771 Ccr3 CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3|MGC124265|MGC124266 chemokine (C-C motif) receptor 3 MGI:104616 Mm.57050 9 9 F|9 71.8 cM CCR3 1232 NM_007718 - 38759 123827206 12770 Ccr1l1 0 TTCTTCTCTGCAAAGGCATCATT GACTCTCCACAGCCAGGAACTAA 3 2 10 1.1.1.3.10.2 BCBC-5B-0 14131166 P220624 Ugcgl1 ProximalPromoter P220624 ProximalPromoter Unique Tile chr1:36188807-36189742 (-) NM_198899 - 7 36188814 320011 Ugcgl1 0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik UDP-glucose ceramide glucosyltransferase-like 1 MGI:2443162 Mm.261022; Mm.392153; Mm.261022; Mm.392153; Mm.261022; Mm.392153; Mm.261022; Mm.392153; Mm.261022; Mm.392153; Mm.261022; Mm.392153; Mm.261022; Mm.392153; Mm.261022; Mm.392153; Mm.261022; Mm.392153; Mm.261022; Mm.392153; Mm.261022; Mm.392153; Mm.261022; Mm.392153; Mm.261022; Mm.392153; Mm.261022; Mm.392153; Mm.261022; Mm.392153; Mm.261022; Mm.392153; Mm.261022; Mm.392153 1 1 B UGCGL1 56886 NM_153408 - 28220 36217962 214854 Lincr 0 CAAGAATTCTGGCTAGTGTGGCT TCTCAAAGCAATAACCCAGTTGC 3 2 11 1.1.1.3.11.2 BCBC-5B-0 14131185 P221746 Olfr392 ProximalPromoter P221746 ProximalPromoter Unique Tile chr11:73631196-73632123 (-) NM_147006 - 79 73631275 259008 Olfr392 MOR135-9 olfactory receptor 392 MGI:3030226 Mm.223395 11 - NM_146347 + 28062 73603134 258344 Olfr390 0 GATGTCTGAACATGCAATCAAGG AACAACAGCTGGTACTCTGAGGG 3 2 12 1.1.1.3.12.2 BCBC-5B-0 14131204 P222496 Sgcb ProximalPromoter P222496 ProximalPromoter Unique Tile chr5:73935825-73936904 (+) NM_011890 - 8959 73926866 24051 Sgcb 43kDa|AI747103|AI844814|beta-SG sarcoglycan, beta (dystrophin-associated glycoprotein) MGI:1346523 Mm.89310 5 5 C3.3 SGCB 6443 NM_153568 - 24269 73911556 231296 BC031901 0 CACAGGCTTCAGAACTTTCCCTA TTGTCTCCACGCCTTCATTATTT 3 2 13 1.1.1.3.13.2 BCBC-5B-0 14131223 P223618 Mrpl34 Enhancer P223618 Enhancer Unique Tile chr8:74393705-74394670 (-) NM_053162 + 242 74393947 94065 Mrpl34 0610007O17Rik|D8Bwg1484e mitochondrial ribosomal protein L34 MGI:2137227 Mm.29489 8 8 B3.3|8 33.5 cM MRPL34 64981 NM_022419 - 1070 74392635 64296 Abhd8 0 TCTGTGTTTTAATGACCCCGTCT GCGAAGAACTACAACTCCCAGAA 3 2 14 1.1.1.3.14.2 BCBC-5B-0 14131242 P224458 Aqp9 Enhancer P224458 Enhancer Unique Tile chr9:70965587-70966674 (-) NM_022026 - 3738 70961849 64008 Aqp9 AI266899 aquaporin 9 MGI:1891066 Mm.335570 9 9 D AQP9 366 NM_009022 + 47707 71014381 19378 Aldh1a2 0 GAAACTTGTGCTTGTTTTGGTCC CCCATTCTGCTGTAGACAGTCCT 3 2 15 1.1.1.3.15.2 BCBC-5B-0 14131261 P225208 Sytl5 ProximalPromoter P225208 ProximalPromoter Unique Tile chrX:9041573-9042543 (+) NM_177704 + 37 9042580 236643 Sytl5 slp5 synaptotagmin-like 5 MGI:2668451 Mm.246606 X X A1.1 SYTL5 94122 NM_026096 + 37626 9003947 67334 1700054O13Rik 0 TTCAGTTTGGAGTTCTGGTTGGT TTCTCCTGCTCAACCTAGTGTCC 3 2 16 1.1.1.3.16.2 BCBC-5B-0 14131280 P226436 Pdx1 P226436 Pdx1 Unique Tile chr4:132996924-132997831 (+) 0 GGATAGTCCCAGCATACCTTCCT AGACACACTCATACTTCCCCTGG 3 2 17 1.1.1.3.17.2 BCBC-5B-0 14131299 P226226 Thbs3 Pdx1 P226226 Pdx1 Unique Tile chr3:89303198-89304100 (+) NM_013691 + 2039 89301159 21827 Thbs3 Thbs-3 thrombospondin 3 MGI:98739 Mm.2114 3 3 E3-F1|3 44.1 cM THBS3 7059 NM_013604 - 3365 89299833 17827 Mtx1 0 GTTTCTCCATGTAGCTCCAGCCT AAGGAAAGTGTTAACTGGGGAGG 3 2 18 1.1.1.3.18.2 BCBC-5B-0 14131318 P226202 Nppc Pdx1 P226202 Pdx1 Unique Tile chr1:88500503-88501405 (+) NM_010933 - 270 88501675 18159 Nppc CNP|MGC130574 natriuretic peptide precursor type C MGI:97369 Mm.12802 1 1 D|1 54.0 cM NPPC 4880 NM_153530 + 33608 88535013 208718 4930429A22Rik 0 GGGACTGCATAAGCCTGTCTCTA GGGACTTCTCGGGTTCATTTC 3 2 19 1.1.1.3.19.2 BCBC-5B-0 14131337 P003351 Cy3 Anchor P003351 Anchor Control Positive Cy3 Anchor 3 2 20 1.1.1.3.20.2 BCBC-5B-0 14130977 P211796 Tle3 PufferfishHuman P211796 PufferfishHuman Unique Tile chr9:61167968-61169032 (+) NM_009389 + 2358 61171390 21887 Tle3 2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547 transducin-like enhancer of split 3, homolog of Drosophila E(spl) MGI:104634 Mm.24255 9 - TLE3 7090 0 CTGCACTTTGATTAGCAGCTTCA TCGCGTTTGCATCTTAATGAGTA 3 3 1 1.1.1.3.1.3 BCBC-5B-0 14130996 P212636 miRNA P212636 miRNA Unique Tile chr5:138395855-138396844 (-) mmu-mir-25 0 AATGACCTCCGGTGAATGAAGTA GCTATGTACCGTCTGTGGGAAAC 3 3 2 1.1.1.3.2.3 BCBC-5B-0 14131015 P213386 Rgs5 Enhancer P213386 Enhancer Unique Tile chr1:171495740-171496673 (+) NM_009063 + 3543 171492197 19737 Rgs5 1110070A02Rik regulator of G-protein signaling 5 MGI:1098434 Mm.20954; Mm.427492; Mm.20954; Mm.427492; Mm.20954; Mm.427492; Mm.20954; Mm.427492; Mm.20954; Mm.427492; Mm.20954; Mm.427492; Mm.20954; Mm.427492; Mm.20954; Mm.427492; Mm.20954; Mm.427492; Mm.20954; Mm.427492 1 1 H2|1 86.5 cM RGS5 8490 0 AATGAGGTATTGGGGATTTCCTG TACTTGGTAGGGTCTACCCGTGA 3 3 3 1.1.1.3.3.3 BCBC-5B-0 14131034 P214508 Hdgfrp3 Enhancer P214508 Enhancer Unique Tile chr7:81806476-81807490 (-) NM_013886 - 69 81807559 29877 Hdgfrp3 2700022B06Rik|HRP-3 hepatoma-derived growth factor, related protein 3 MGI:1352760 Mm.392934 7 7 D3 HDGFRP3 50810 1 TTCGCCAAGATGAAGGGCTAC AAGAATACCCAGCATTGTCTCCA 3 3 4 1.1.1.3.4.3 BCBC-5B-0 14131053 P215258 Gins4 Enhancer P215258 Enhancer Unique Tile chr8:24707145-24708223 (-) NM_024240 - 3941 24703204 109145 Gins4 2810037C03Rik|4933405K01Rik|Sld5 GINS complex subunit 4 (Sld5 homolog) MGI:1923847 Mm.27945 8 8 A3 GINS4 84296 NM_020585;NM_001042484; - 14246 24722469 57437 Golga7 0 TGTTTTGGTTTTTGGCCTCTCTA AACTTCTCCCAAACACAGTGCTC 3 3 5 1.1.1.3.5.3 BCBC-5B-0 14131072 P216098 Tm9sf1 Enhancer P216098 Enhancer Unique Tile chr14:54596587-54597551 (-) NM_028780 - 161 54597390 74140 Tm9sf1 1200014D02Rik|AI893436|MP70 transmembrane 9 superfamily member 1 MGI:1921390 Mm.132857 14 14 C3 TM9SF1 10548 NM_024267 - 6559 54590028 75751 Ipo4 1 CAGAGCTCTTCCAGGAGCATTC AAAGGTACCATAGATGCAAGGCA 3 3 6 1.1.1.3.6.3 BCBC-5B-0 14131091 P217220 Lcor Enhancer P217220 Enhancer Unique Tile chr19:41598865-41599851 (+) NM_172154 + 3098 41602949 212391 Lcor 3110023F06Rik|A630025C20Rik|Mlr2|mKIAA1795 ligand dependent nuclear receptor corepressor MGI:2443930 Mm.422910 19 19 C3 LCOR 84458 NM_183215 + 46822 41646673 226118 AI606181 0 TCAAGCACGGACACACTGTAACT TTATGTCAATGGGCTGGATTTTC 3 3 7 1.1.1.3.7.3 BCBC-5B-0 14131110 P217970 Phr1 Enhancer P217970 Enhancer Unique Tile chr14:102235285-102236261 (-) NM_207215 - 3158 102232127 105689 Phr1 AU023734|AW107953|AW546647|C130061D10Rik|Pam|R75243 pam, highwire, rpm 1 MGI:2179432 Mm.6478 14 14 E2.3|14 54.58 cM MYCBP2 23077 0 TTTTACGTGCACATCATGGTCTT ACATGCTCACTTAGGTATGGCGT 3 3 8 1.1.1.3.8.3 BCBC-5B-0 14131129 P219010 ProximalPromoter P219010 ProximalPromoter Unique Tile chr7:8294940-8295881 (-) 0 TTGACTCTCCCCATGACTCTAGC TGTTGGTATCCCAAAATTTCACC 3 3 9 1.1.1.3.9.3 BCBC-5B-0 14131148 P219850 Fcer1a Enhancer P219850 Enhancer Unique Tile chr1:175067056-175068047 (-) NM_010184 - 3167 175063889 14125 Fcer1a FcERI|Fce1a|Fcr-5 Fc receptor, IgE, high affinity I, alpha polypeptide MGI:95494 Mm.5266 1 1 H3|1 94.2 cM FCER1A 2205 NM_146881 + 14729 175052327 258881 Olfr1404 0 ACCTGCAACTGTAGGAAGACAGG GAAAGAACAGTCAAGTGGGTGCT 3 3 10 1.1.1.3.10.3 BCBC-5B-0 14131167 P220600 AY358078 ProximalPromoter P220600 ProximalPromoter Unique Tile chr14:50721090-50722086 (+) NM_194347 + 90 50721996 278676 AY358078 - cDNA sequence AY358078 MGI:2682312 Mm.34546 14 14 C1 NM_177544 - 25549 50695541 219033 Ang4 0 GCAAAGAACCCAATCTGAAAATG TTCTACCAAAGCCAACTTACCCA 3 3 11 1.1.1.3.11.3 BCBC-5B-0 14131186 P221722 Ict1 Enhancer P221722 Enhancer Unique Tile chr11:115216864-115217781 (+) NM_026729 + 2060 115219841 68572 Ict1 1110001A02Rik|1110002E03Rik immature colon carcinoma transcript 1 MGI:1915822 Mm.271062 11 11 E2 ICT1 3396 NM_027862 - 18226 115236007 71679 Atp5h 0 GGAGGCACTGTTCTCTACCTTCA GGCTAAGTTCCTTGGTTGAGGTT 3 3 12 1.1.1.3.12.3 BCBC-5B-0 14131205 P222472 Adh7 Enhancer P222472 Enhancer Unique Tile chr3:138157744-138158720 (+) NM_009626 + 2514 138155230 11529 Adh7 AI325182|Adh-3|Adh-3e|Adh-3t|Adh3|Adh3-e|Adh3-t|Adh4|Adt-1 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide MGI:87926 Mm.8473 3 3 G3|3 71.2 cM ADH7 131 0 TGATTAAGCTCTCTGTGTGCCAG GGTCTTTAATGACATCTGCAGCC 3 3 13 1.1.1.3.13.3 BCBC-5B-0 14131224 P223312 1700013N18Rik Enhancer P223312 Enhancer Unique Tile chr5:108072140-108073057 (+) NM_028502 + 1586 108070554 73318 1700013N18Rik - RIKEN cDNA 1700013N18 gene MGI:1920568 Mm.45616 5 5 F NM_007964 - 42352 108115409 14020 Evi5 0 CTCAGCCTTGTCATGCTTTCTTT TTCCATAGGCCTTATGCACACTT 3 3 14 1.1.1.3.14.3 BCBC-5B-0 14131243 P224434 Olfr1233 ProximalPromoter P224434 ProximalPromoter Unique Tile chr2:89141175-89142149 (-) NM_146972 - 36 89141139 258974 Olfr1233 MOR238-1 olfactory receptor 1233 MGI:3031067 Mm.223365 2 - NM_146323 - 14158 89127017 258320 Olfr1232 0 TGCTGGCTGTGATCAGTTAAAAA CTGAAGTGAGGAGTTAGCCTGGA 3 3 15 1.1.1.3.15.3 BCBC-5B-0 14131262 P225184 Cyp2c65 ProximalPromoter P225184 ProximalPromoter Unique Tile chr19:39125028-39126051 (+) NM_028191 + 7 39126058 72303 Cyp2c65 2210009K14Rik|MGC144816|MGC144817 cytochrome P450, family 2, subfamily c, polypeptide 65 MGI:1919553 Mm.271190 19 19 C3 0 CTTTTCTGCTCATGGATTTGCTT ATGACTGTGCACACAACCAAAAG 3 3 16 1.1.1.3.16.3 BCBC-5B-0 14131281 P226412 Pdx1 P226412 Pdx1 Unique Tile chr1:63990656-63991563 (+) 0 GGACCCTATAGGCTTGCTCTCTC TAGGTCCTGGTCATTGGATATGG 3 3 17 1.1.1.3.17.3 BCBC-5B-0 14131300 P226292 2610033H07Rik Pdx1 P226292 Pdx1 Unique Tile chr5:34966154-34967057 (+) NM_029278 - 9869 34976926 75416 2610033H07Rik - RIKEN cDNA 2610033H07 gene MGI:1922666 Mm.40292 5 5 B2 C4orf9 8602 NM_019497 + 10752 34977809 14772 Gprk2l 0 TGCTAATACTCCAATACCCAGCA GAGTGCATGGTCACATTTCTCTG 3 3 18 1.1.1.3.18.3 BCBC-5B-0 14131319 P226178 Eif4g3 Pdx1 P226178 Pdx1 End Repeat Tile chr4:137280344-137281245 (+) NM_172703 + 14799 137265545 230861 Eif4g3 1500002J22Rik|4833436O05|4930523M17Rik|eIF4GII eukaryotic translation initiation factor 4 gamma, 3 MGI:1923935 Mm.268903 4 4 D3 EIF4G3 8672 2 CTTCCTTCCTTCCTTCCTTCCTT TGAGGGTAACATGACACAGTGCT 3 3 19 1.1.1.3.19.3 BCBC-5B-0 14131338 P003183 Blank P003183 Buffer Control Negative Blank 3 3 20 1.1.1.3.20.3 BCBC-5B-0 14130978 P211490 Zfhx4 PufferfishHuman P211490 PufferfishHuman Unique Tile chr3:5195288-5196279 (-) NM_030708 + 28465 5224744 80892 Zfhx4 A930021B15|C130041O22Rik|Zfh-4|Zfh4 zinc finger homeodomain 4 MGI:2137668 Mm.41522 3 3 A1 ZFHX4 79776 0 AAATATGAGGCACAAAAGCTCCA TCATCATTGTCATTACCCCCTTC 3 4 1 1.1.1.3.1.4 BCBC-5B-0 14130997 P212612 miRNA P212612 miRNA Unique Tile chrX:18307984-18308991 (-) mmu-mir-221 0 CCTCAAGTGCCAAGAATGAGACT AATCAGGTTGGCACAAGATCCTA 3 4 2 1.1.1.3.2.4 BCBC-5B-0 14131016 P213362 Rac2 Enhancer P213362 Enhancer Unique Tile chr15:78398283-78399303 (-) NM_009008 - 651 78399954 19354 Rac2 AI323801|AI452260 RAS-related C3 botulinum substrate 2 MGI:97846 Mm.1972 15 15 E1 RAC2 5880 NM_028195 + 24998 78424301 72318 Pscd4 0 CATTAGGGTGCAGTCCTCAAGTC TACCAGTGTGTGGGATACAGGTG 3 4 3 1.1.1.3.3.4 BCBC-5B-0 14131035 P214484 Ate1 Enhancer P214484 Enhancer Unique Tile chr7:130309492-130310546 (-) NM_013799;NM_001029895; - 132 130310678 11907 Ate1 AI225793|AW547406 arginine-tRNA-protein transferase 1 MGI:1333870 Mm.216321 7 7 F3 ATE1 11101 0 CAGTGTGGCTACTGCAAGAACAA GCCTTATTTGGGCTTTATTGGAC 3 4 4 1.1.1.3.4.4 BCBC-5B-0 14131054 P215324 Chchd1 Enhancer P215324 Enhancer Unique Tile chr14:19495565-19496488 (+) NM_025366 + 3945 19491620 66121 Chchd1 1110001O19Rik|2400010G13Rik|MGC106657 coiled-coil-helix-coiled-coil-helix domain containing 1 MGI:1913371 Mm.246996 14 14 B CHCHD1 118487 NM_028428 + 12043 19483522 73068 Fut11 1 TCATAAACAATCAGGCAAGGTGA ACGAACAGAGTGAATCCTCCTCA 3 4 5 1.1.1.3.5.4 BCBC-5B-0 14131073 P216074 Map4k1 Enhancer P216074 Enhancer Unique Tile chr7:28691765-28692737 (-) NM_008279 + 133 28691632 26411 Map4k1 Hpk1|mHPK1 mitogen activated protein kinase kinase kinase kinase 1 MGI:1346882 Mm.148278 7 7 B1 MAP4K1 11184 NM_028659 - 1191 28690574 73830 Eif3s12 0 CTGAGGATAGCCAGGAAGTGTGT ATGATCTACTGCAACGACTGGGT 3 4 6 1.1.1.3.6.4 BCBC-5B-0 14131092 P217196 Traf7 Enhancer P217196 Enhancer Unique Tile chr17:24259391-24260304 (-) NM_153792 - 3961 24255430 224619 Traf7 MGC7807|RFWD1 Tnf receptor-associated factor 7 MGI:3042141 Mm.275150 17 17 A3.3 TRAF7 84231 NM_013630 + 17245 24277549 18763 Pkd1 0 AAGGTCTCTTAGGAGCTTCCAGC CAACACCTCAGCACATGAGATTC 3 4 7 1.1.1.3.7.4 BCBC-5B-0 14131111 P217946 BC037393 Enhancer P217946 Enhancer Unique Tile chr5:150932982-150933930 (-) NM_201369 - 26 150933956 381695 BC037393 MGC25830 cDNA sequence BC037393 MGI:2687207 Mm.425302 5 5 G3 PFAAP5 10443 1 TCCAGCTCCGTTTAATAGCTACG TTTTTAGGCAGGGTGGTCTATGA 3 4 8 1.1.1.3.8.4 BCBC-5B-0 14131130 P218704 9530077C05Rik ProximalPromoter P218704 ProximalPromoter Unique Tile chr9:22160969-22161927 (+) NM_026739 + 51 22161978 68283 9530077C05Rik 1110003N12Rik|KIAA0895|mKIAA0895 RIKEN cDNA 9530077C05 gene MGI:1915533 Mm.280669 9 9 A3 KIAA0895 23366 NM_028390 - 21379 22139590 68743 Anln 0 AACCCCTTTATGCAACCTCAGAT CTAGGAGACGATCCTGCCTTCTT 3 4 9 1.1.1.3.9.4 BCBC-5B-0 14131149 P219826 Cdh17 Enhancer P219826 Enhancer Unique Tile chr4:11685869-11686928 (+) NM_019753 + 484 11685385 12557 Cdh17 HPT-1|HPT-1/LI cadherin 17 MGI:1095414 Mm.33402 4 4 A2 CDH17 1015 0 TTGGAGGAGACAAATCCAGTGTT ATATGGAAACTGTCTGGGGGACT 3 4 10 1.1.1.3.10.4 BCBC-5B-0 14131168 P220576 Ndufaf1 Enhancer P220576 Enhancer Duplication Tile chr2:119356587-119357490 (-) NM_027175 - 2347 119354240 69702 Ndufaf1 2410001M24Rik|CGI-65|CIA30 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1 MGI:1916952 Mm.5390 2 2 E5 NDUFAF1 51103 NM_133851 + 46399 119310188 108907 Nusap1 0 AGGTGTCCATACCATGGCTCTTA CAGGAACAGCACACAAGACTGAC 3 4 11 1.1.1.3.11.4 BCBC-5B-0 14131187 P221698 Btf3 ProximalPromoter P221698 ProximalPromoter Unique Tile chr13:99417053-99417985 (-) NM_145455 - 66 99417119 218490 Btf3 1700054E11Rik basic transcription factor 3 MGI:1202875 Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121 13 13 D1 BTF3 689 NM_008242 + 36426 99454411 15229 Foxd1 1 ATTTGTCTGGGAATGGTGCTAGA GAACTAAGGTTCACGCTCAGGG 3 4 12 1.1.1.3.12.4 BCBC-5B-0 14131206 P222538 Aarsl ProximalPromoter P222538 ProximalPromoter Unique Tile chr17:44969362-44970333 (+) NM_198608 + 88 44970421 224805 Aarsl Gm89|MGC69820 alanyl-tRNA synthetase like MGI:2681839 Mm.329063 17 17 B3 AARSL 57505 NM_013688 + 26300 44996633 21645 Tcte1 0 GTGATGGCCCCTAACCATAGAAT GGGCAAGTCTCAGCTTCTAGTGA 3 4 13 1.1.1.3.13.4 BCBC-5B-0 14131225 P223288 V1rc23 ProximalPromoter P223288 ProximalPromoter Unique Tile chr6:57830513-57831612 (-) NM_134178 - 55 57830568 171196 V1rc23 - vomeronasal 1 receptor, C23 MGI:2159459 Mm.377175 6 6 B3 NM_134179 - 24757 57856369 171197 V1rc24 0 GAAGAAGTGGGGAGGAAGAAAAA TTGGCTAGAACTCCAAGTCCAGA 3 4 14 1.1.1.3.14.4 BCBC-5B-0 14131244 P224410 Cpne3 Enhancer P224410 Enhancer Unique Tile chr4:19496070-19497157 (-) NM_027769 - 94 19497251 70568 Cpne3 5430428M23Rik|5730450C07Rik|C85108|CPN3|KIAA0636 copine III MGI:1917818 Mm.299906; Mm.38390; Mm.299906; Mm.38390; Mm.299906; Mm.38390; Mm.299906; Mm.38390; Mm.299906; Mm.38390; Mm.299906; Mm.38390; Mm.299906; Mm.38390; Mm.299906; Mm.38390; Mm.299906; Mm.38390; Mm.299906; Mm.38390; Mm.299906; Mm.38390; Mm.299906; Mm.38390; Mm.299906; Mm.38390; Mm.299906; Mm.38390; Mm.299906; Mm.38390 4 4 A3 CPNE3 8895 NM_025476 + 5087 19502244 66302 2410005O16Rik 1 GATATAGCACGTGAGTGCGTGAC ATTTAGCCCTCACCACTCTGACA 3 4 15 1.1.1.3.15.4 BCBC-5B-0 14131263 P225160 Ces7 ProximalPromoter P225160 ProximalPromoter Unique Tile chr8:96424883-96425852 (-) NM_001003951 - 47 96424836 67935 Ces7 1700081L16Rik|1700122C07Rik|BB081581|Gm503|cauxin carboxylesterase 7 MGI:1915185 Mm.200622; Mm.390064; Mm.65457; Mm.200622; Mm.390064; Mm.65457; Mm.200622; Mm.390064; Mm.65457; Mm.200622; Mm.390064; Mm.65457 8 8 C5 CES7 221223 0 ACCCAGAGGCACTGGTATCATAA CCTCAGAGAACTTCAATCAGGGA 3 4 16 1.1.1.3.16.4 BCBC-5B-0 14131282 P227642 Pdx1 P227642 Pdx1 Unique Tile chr14:22531281-22532244 (+) 0 CCCCCTTTCCTCAAAACAGTAAC AAGAAAGCCTATCCCTTGTTTGG 3 4 17 1.1.1.3.17.4 BCBC-5B-0 14131301 P226268 Zdhhc19 Pdx1 P226268 Pdx1 Unique Tile chr16:32444116-32445019 (+) NM_199309 + 28089 32416027 245308 Zdhhc19 Gm616|MGC58833 zinc finger, DHHC domain containing 19 MGI:2682948 Mm.76859 16 16 B3 ZDHHC19 131540 NM_145932 - 36490 32407626 106407 Osta 0 AGCCATGTAGCTTTTCAAGGACA GAAGACTGCGGCTGGTAATGTAG 3 4 18 1.1.1.3.18.4 BCBC-5B-0 14131320 P226154 Fbln5 Pdx1 P226154 Pdx1 Unique Tile chr12:102193567-102194468 (+) NM_011812 - 25391 102219859 23876 Fbln5 A55|DANCE|EVEC fibulin 5 MGI:1346091 Mm.288381; Mm.400205; Mm.288381; Mm.400205; Mm.288381; Mm.400205; Mm.288381; Mm.400205; Mm.288381; Mm.400205; Mm.288381; Mm.400205; Mm.288381; Mm.400205; Mm.288381; Mm.400205; Mm.288381; Mm.400205; Mm.288381; Mm.400205; Mm.288381; Mm.400205; Mm.288381; Mm.400205; Mm.288381; Mm.400205; Mm.288381; Mm.400205; Mm.288381; Mm.400205; Mm.288381; Mm.400205; Mm.288381; Mm.400205; Mm.288381; Mm.400205; Mm.288381; Mm.400205; Mm.288381; Mm.400205; Mm.288381; Mm.400205 12 12 F1 FBLN5 10516 0 ACTGAAGTCCCCCTCTTTGAGTT TCTGGCCCAACTCTATGAAGACT 3 4 19 1.1.1.3.19.4 BCBC-5B-0 14131339 P003183 Blank P003183 Buffer Control Negative Blank 3 4 20 1.1.1.3.20.4 BCBC-5B-0 14130979 P211466 PufferfishHuman P211466 PufferfishHuman Unique Tile chr13:73462128-73463207 (+) 0 ACAGGTTGGGTAGTATGCAAGGA TTTTCTCCCAGTTCTGCTTGTTC 3 5 1 1.1.1.3.1.5 BCBC-5B-0 14130998 P212588 miRNA P212588 miRNA Unique Tile chr11:75279706-75280777 (-) mmu-mir-22 0 CTTTTAATGCCCTCCTGCCTACT TGCCAGCTCCTAGTCTGTAAAGG 3 5 2 1.1.1.3.2.5 BCBC-5B-0 14131017 P213338 Pipox Enhancer P213338 Enhancer Unique Tile chr11:77712811-77713846 (-) NM_008952 - 2830 77709981 19193 Pipox LPIPOX|Pso pipecolic acid oxidase MGI:1197006 Mm.8543 11 11 B5|11 44.83 cM PIPOX 51268 NM_021286 + 33187 77747033 20370 Sez6 0 CAACCAGCATCCTCTTAAGCATT GACACACTGCTTACAACCGTGAC 3 5 3 1.1.1.3.3.5 BCBC-5B-0 14131036 P214178 Srebf1 Enhancer P214178 Enhancer Unique Tile chr11:60038833-60039792 (-) NM_011480 - 2034 60036799 20787 Srebf1 ADD-1|D630008H06|SREBP-1|SREBP-1a|SREBP-1c|SREBP1 sterol regulatory element binding factor 1 MGI:107606 Mm.278701 11 11 B2 SREBF1 6720 2 AACGAGGTCAAAGAGAGTTGCAG CTTAGGAAGGCGTCTGTTTCCTT 3 5 4 1.1.1.3.4.5 BCBC-5B-0 14131055 P215300 Slc31a2 Enhancer P215300 Enhancer Unique Tile chr4:61773130-61774043 (+) NM_025286 + 232 61772898 20530 Slc31a2 AI604396|MGC117640 solute carrier family 31, member 2 MGI:1333844 Mm.292539 4 4 B3 SLC31A2 1318 1 AGGAGTCAGTCACTACAGCCAGG TCCACTTCCTACCGAGTTCAAAA 3 5 5 1.1.1.3.5.5 BCBC-5B-0 14131074 P216050 Anln Enhancer P216050 Enhancer Unique Tile chr9:22138239-22139158 (-) NM_028390 - 432 22139590 68743 Anln 1110037A17Rik|2900037I21Rik|ANILLIN|C78101|Scraps anillin, actin binding protein (scraps homolog, Drosophila) MGI:1920174 Mm.282751 9 9 A4 ANLN 54443 NM_026739 + 22820 22161978 68283 9530077C05Rik 0 AGTCGTTTAGCCTTCCTCCACTC ACTGAGAACTTCAAACGGAGCAC 3 5 6 1.1.1.3.6.5 BCBC-5B-0 14131093 P217172 6330569M22Rik Enhancer P217172 Enhancer Unique Tile chr3:107758460-107759448 (-) NM_153563 - 283 107759731 229707 6330569M22Rik 6530401O14Rik|MGC38111 RIKEN cDNA 6330569M22 gene MGI:2443884 Mm.278643 3 3 F2.3 NM_007441 + 35374 107723086 11694 Alx3 0 ACCCTGGGAGCTGTCACTTTAC AGTAGCCACTGATCACCCATCAT 3 5 7 1.1.1.3.7.5 BCBC-5B-0 14131112 P218012 Pax6 ChickenHuman P218012 ChickenHuman Unique Tile chr2:105516503-105517420 (-) NM_013627 + 39212 105477291 18508 Pax6 1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey paired box gene 6 MGI:97490 Mm.3608 2 2 E3|2 58.0 cM PAX6 5080 0 CCTAGCATCACCTGGCTGTTAGT CCTGACAGCTCTAAATCTCCCAA 3 5 8 1.1.1.3.8.5 BCBC-5B-0 14131131 P218680 Ppme1 ProximalPromoter P218680 ProximalPromoter Unique Tile chr7:100245971-100246942 (-) NM_028292 - 4 100245967 72590 Ppme1 1110069N17Rik|2700017M01Rik|Pme1 protein phosphatase methylesterase 1 MGI:1919840 Mm.177502 7 7 F1 PPME1 51400 NM_001017985 + 1558 100248500 277939 AU020772 0 CCTCTATCACACACCCTTTCACC CGGTCACAGCTCTCTCCTCTAAC 3 5 9 1.1.1.3.9.5 BCBC-5B-0 14131150 P219802 Olfr1507 ProximalPromoter P219802 ProximalPromoter Unique Tile chr14:51412896-51413855 (-) NM_020512 - 17 51412913 57269 Olfr1507 MOR244-1|Mor28|Or28 olfactory receptor 1507 MGI:3031341 Mm.88822 14 14 C1 NM_020513 - 26938 51385958 57270 Olfr1508 0 TAGTCCTTGCTTCTTTGCTGCTT GAGGACAGCCTTTTCCATTCTTT 3 5 10 1.1.1.3.10.5 BCBC-5B-0 14131169 P220552 Dennd4b ProximalPromoter P220552 ProximalPromoter Unique Tile chr3:90351552-90352462 (+) NM_201407 + 925 90353387 229541 Dennd4b BC026996|mKIAA0476 DENN/MADD domain containing 4B MGI:2446201 Mm.30571 3 3 F1 DENND4B 9909 NM_028881 + 11285 90340267 74343 Crtc2 1 GGACTGTCCCCAGCTGTTCTAC AAGGGAGGCTACTTCCTGAAATG 3 5 11 1.1.1.3.11.5 BCBC-5B-0 14131188 P221392 Olfr161 ProximalPromoter P221392 ProximalPromoter Unique Tile chr16:3506756-3507678 (+) NM_146860 + 53 3507625 258859 Olfr161 MOR131-1|OR912-47M6 olfactory receptor 161 MGI:3032605 Mm.377723 16 - 0 TACCATATAGATCCCAGGGGCTT GAGAGTCCCAGAAGGAGGAACTC 3 5 12 1.1.1.3.12.5 BCBC-5B-0 14131207 P222514 Scnn1g Enhancer P222514 Enhancer Unique Tile chr7:121528683-121529658 (+) NM_011326 + 3029 121525654 20278 Scnn1g [g]ENaC sodium channel, nonvoltage-gated 1 gamma MGI:104695 Mm.35247 7 7 F2|7 56.0 cM SCNN1G 6340 0 ACAGTGCCTCTGCCTGATAAGAG GACTACGTATGTGTCTGGGGGAG 3 5 13 1.1.1.3.13.5 BCBC-5B-0 14131226 P223264 Grp ProximalPromoter P223264 ProximalPromoter Unique Tile chr18:65997809-65998710 (+) NM_175012 + 152 65998862 225642 Grp BLP|MGC37475 gastrin releasing peptide MGI:95833 Mm.20298 18 18 E1|18 40.0 cM GRP 2922 0 CAACCCATCTCTCCTTCTTCCTT AGTGATGAAAGGCTGAGTATGCC 3 5 14 1.1.1.3.14.5 BCBC-5B-0 14131245 P224386 E130319B15Rik ProximalPromoter P224386 ProximalPromoter Unique Tile chr2:4634067-4634817 (+) NM_178663 + 599 4635416 209645 E130319B15Rik 1110017O21Rik RIKEN cDNA E130319B15 gene MGI:2443100 Mm.149539 2 2 A1 C10orf30 222389 0 CTATCAGAGTGGCTTTTGAACGG TTAGAAATAAGCCAGGGATCGTG 3 5 15 1.1.1.3.15.5 BCBC-5B-0 14131264 P225226 6030458C11Rik ProximalPromoter P225226 ProximalPromoter Unique Tile chr15:12769441-12770370 (-) NM_029998 - 75 12769366 77877 6030458C11Rik MGC118638 RIKEN cDNA 6030458C11 gene MGI:1925127 Mm.207311 15 15 A2 C5orf22 55322 NM_026799 + 160 12769601 14000 Rnasen 0 GGCACACTCCGTTAGAGAAGCTA GTCGATTGGTCTATACGTCCGTC 3 5 16 1.1.1.3.16.5 BCBC-5B-0 14131283 P227618 Gpr68 Pdx1 P227618 Pdx1 Unique Tile chr12:101263805-101264765 (+) NM_175493 - 24135 101288900 238377 Gpr68 BB131428 G protein-coupled receptor 68 MGI:2441763 Mm.32160 12 12 E GPR68 8111 0 AAGATGATGAAGCTGAGACAGGG CACTGTAAGGCACATAGACGGTG 3 5 17 1.1.1.3.17.5 BCBC-5B-0 14131302 P226244 Pdx1 P226244 Pdx1 Unique Tile chrX:109813073-109813975 (+) 0 GCATTTATCATGTTTATAGGCCC CCAAGAAGACATTAACAACCCAA 3 5 18 1.1.1.3.18.5 BCBC-5B-0 14131321 P226130 Kcnj11 Pdx1 P226130 Pdx1 Unique Tile chr7:45996085-45996985 (+) NM_010602 - 27806 45968279 16514 Kcnj11 AI842722|AW491124|Kir6.2|mBIR potassium inwardly rectifying channel, subfamily J, member 11 MGI:107501 Mm.333863 7 7 B3|7 41.0 cM KCNJ11 3767 0 CTGTGATCAACAATTCAAGGCAG TTTCTGGGAGTTCCTGTCTCAAG 3 5 19 1.1.1.3.19.5 BCBC-5B-0 14131340 P003087 Blank P003087 Buffer Control Negative Blank 3 5 20 1.1.1.3.20.5 BCBC-5B-0 14130980 P211442 PufferfishHuman P211442 PufferfishHuman Unique Tile chr15:40184643-40185615 (-) 0 GACATATCCTTTGAACAGCAGCC CCCTGGGAGTGCTAAGAAAAGTT 3 6 1 1.1.1.3.1.6 BCBC-5B-0 14130999 P212564 miRNA P212564 miRNA Unique Tile chr1:20665793-20666723 (+) mmu-mir-206 0 GTGGACAAGATAGACATGGGAGG AAGCAGAAGCAGATGGATCTTTG 3 6 2 1.1.1.3.2.6 BCBC-5B-0 14131018 P213404 Rxrg Enhancer P213404 Enhancer Unique Tile chr1:169435416-169436400 (+) NM_009107 + 358 169435058 20183 Rxrg Nr2b3 retinoid X receptor gamma MGI:98216 Mm.3475 1 1 H2.3|1 88.1 cM RXRG 6258 0 GAGCAGCCAACATGTATGGAAAT AGCATGGTCTCTGACTTTGGTTC 3 6 3 1.1.1.3.3.6 BCBC-5B-0 14131037 P214154 Slc12a7 Enhancer P214154 Enhancer Unique Tile chr13:74230116-74231141 (+) NM_011390 + 418 74229698 20499 Slc12a7 AA408796|D13Ertd261e|Kcc4 solute carrier family 12, member 7 MGI:1342283 Mm.275800 13 13 C1|13 43.0 cM SLC12A7 10723 0 CTTGAATTCAGTGCTCTGCTCCT CAGCCCTGAGACATAGAATGCTT 3 6 4 1.1.1.3.4.6 BCBC-5B-0 14131056 P215276 Morf4l1 Enhancer P215276 Enhancer Unique Tile chr9:89911369-89912277 (-) NM_024431;NM_001039147; - 286 89912563 21761 Morf4l1 KIAA4002|MGC102415|MGC103105|MGC118047|MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002 mortality factor 4 like 1 MGI:1096551 Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385; Mm.196508; Mm.209385 9 9 D1 MORF4L1 10933 NM_001003911 + 48860 89961137 108153 Adamts7 1 GAGGGTAATCTCAGTGCGTCATC GACAGATGAGTTGTGAGAACCGA 3 6 5 1.1.1.3.5.6 BCBC-5B-0 14131075 P216026 Rab38 Enhancer P216026 Enhancer Unique Tile chr7:88301129-88302035 (+) NM_028238 + 3429 88305464 72433 Rab38 2310011F14Rik|AU043391|MGC107581|cht Rab38, member of RAS oncogene family MGI:1919683 Mm.276669 7 7 D3|7 46.0 cM RAB38 23682 0 ATTACAAGTGGGAGCAGGTTTGA CAGGCTCTCCCTATGCTCCTATT 3 6 6 1.1.1.3.6.6 BCBC-5B-0 14131094 P216866 Ppan Enhancer P216866 Enhancer Unique Tile chr9:20634375-20635454 (-) NM_145610 + 3204 20638658 235036 Ppan A230087P06Rik|SSF1 peter pan homolog (Drosophila) MGI:2178445 Mm.2930 9 9 A3 PPAN 56342 NM_145154 - 4263 20630112 70726 Angptl6 0 GGGATAAAAGGCATGTACCATCA TTTCCTTCTCCTTCCTTCCAATC 3 6 7 1.1.1.3.7.6 BCBC-5B-0 14131113 P217988 Espn Enhancer P217988 Enhancer Unique Tile chr4:150975429-150976345 (-) NM_207688;NM_207691;NM_207687;NM_019585;NM_207690;NM_207689; - 2704 150972725 56226 Espn je espin MGI:1861630 Mm.264215 4 4 E1|4 80.1 cM ESPN 83715 NM_033042 + 15287 150960142 85030 Tnfrsf25 0 TTAGAACTGGGTTGAGGGGTGTA GCTGCACCCTACTAGCTGCTC 3 6 8 1.1.1.3.8.6 BCBC-5B-0 14131132 P218656 Olfr995 ProximalPromoter P218656 ProximalPromoter Unique Tile chr2:85239937-85240980 (-) NM_146434 - 58 85239995 258426 Olfr995 MOR203-3 olfactory receptor 995 MGI:3030829 Mm.377494 2 - NM_146433 - 8271 85231666 258425 Olfr994 0 TCATGGCAGTGAATCACAGAGTT TGGACTCCAAATCCCAGAAGATA 3 6 9 1.1.1.3.9.6 BCBC-5B-0 14131151 P219778 Blmh ProximalPromoter P219778 ProximalPromoter Unique Tile chr11:76761019-76762021 (+) NM_178645 + 27 76761994 104184 Blmh AI035728|BH|BMH|MGC36899|MGC37104|MGC39026 bleomycin hydrolase MGI:1345186 Mm.22876 11 11 B5 BLMH 642 NM_025655 + 40270 76720749 66601 Tmigd1 0 TTAGGCTCCATGGAAAATCTGAA CTCTGGGGTTACACTACAGTCCG 3 6 10 1.1.1.3.10.6 BCBC-5B-0 14131170 P220618 Olfr888 ProximalPromoter P220618 ProximalPromoter Unique Tile chr9:37858353-37859299 (+) NM_146424 + 41 37859258 258416 Olfr888 MOR162-4 olfactory receptor 888 MGI:3030722 Mm.271345 9 - NM_146482 + 7069 37866368 258475 Olfr889 1 ATGGAAAGAGGATGGGGAAGTAA ACAGAAGAGTCATTGCTGAAGGC 3 6 11 1.1.1.3.11.6 BCBC-5B-0 14131189 P221368 Fbxw4 Enhancer P221368 Enhancer Unique Tile chr19:45708830-45709737 (-) NM_013907 - 3629 45713366 30838 Fbxw4 Dac|Fbw4|SHFM3|SHSF3|dactylin F-box and WD-40 domain protein 4 MGI:1354698 Mm.254739 19 19 C3|19 43.0 cM FBXW4 6468 1 TACTTGTGCTTGAAGGCATTTGA GCCTTAAAGACCAATCAGCAATG 3 6 12 1.1.1.3.12.6 BCBC-5B-0 14131208 P222490 C130052I12Rik ProximalPromoter P222490 ProximalPromoter Unique Tile chr13:74069025-74069851 (+) NM_146047 + 451 74070302 218335 C130052I12Rik Crr9|MGC36304 RIKEN cDNA C130052I12 gene MGI:2442892 Mm.30099 13 13 C1 CRR9 81037 NM_009354 + 23151 74093002 21752 Tert 2 TCTCCCAAAGACTAAACCACCAA GTTGCTCTTCTTAAGGCCCTGTG 3 6 13 1.1.1.3.13.6 BCBC-5B-0 14131227 P223240 Adra2a ProximalPromoter P223240 ProximalPromoter Unique Tile chr19:54098527-54099427 (+) NM_007417 + 883 54098544 11551 Adra2a AW122659|Adra-2|Adra-2a|alpha2-C10|alpha2A adrenergic receptor, alpha 2a MGI:87934 Mm.235195 19 19 D2|19 50.0 cM ADRA2A 150 1 GCTTCATCCTGGGGCTATAAAAC GCCTCACATAAGGAAGAGGGC 3 6 14 1.1.1.3.14.6 BCBC-5B-0 14131246 P224080 Chst1 Enhancer P224080 Enhancer Unique Tile chr2:92408100-92409081 (+) NM_023850 + 3530 92412611 76969 Chst1 2610008E20Rik|AW125896|C6ST|GST-1|Gst1|KSGAL6ST carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 MGI:1924219 Mm.38021 2 - CHST1 8534 0 GCTATCTCTTGGCTCTTGTGGAA ACAAAGAAAACCACGTCAAGGAA 3 6 15 1.1.1.3.15.6 BCBC-5B-0 14131265 P225202 8430427H17Rik ProximalPromoter P225202 ProximalPromoter Unique Tile chr2:153175307-153176232 (-) NM_001001986 - 83 153175224 329540 8430427H17Rik 4931410H15|AI429157|Gm1636 RIKEN cDNA 8430427H17 gene MGI:1918765 Mm.428172; Mm.50600; Mm.428172; Mm.50600; Mm.428172; Mm.50600; Mm.428172; Mm.50600; Mm.428172; Mm.50600; Mm.428172; Mm.50600; Mm.428172; Mm.50600; Mm.428172; Mm.50600; Mm.428172; Mm.50600; Mm.428172; Mm.50600; Mm.428172; Mm.50600; Mm.428172; Mm.50600; Mm.428172; Mm.50600; Mm.428172; Mm.50600; Mm.428172; Mm.50600; Mm.428172; Mm.50600 2 2 H1 C20orf112 140688 0 CATGGGTGCCCATACTATTTGTT GTTAGTGTCAGGGTTGATGGAGG 3 6 16 1.1.1.3.16.6 BCBC-5B-0 14131284 P227594 E430034L04Rik Pdx1 P227594 Pdx1 Unique Tile chr5:93170961-93171918 (+) NM_011816 - 12103 93158858 23881 E430034L04Rik AA409541|G3BP|G3BP2|KIAA0660|mKIAA0660 RIKEN cDNA E430034L04 gene MGI:2442040 Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625; Mm.290530; Mm.426625 5 5 E2 G3BP2 9908 NM_019490 + 41219 93213137 56041 Vdp 0 GTTTTCCATCAAGGAGTAGCCAA CAGTGATTCTCAGTGTCTGGTGG 3 6 17 1.1.1.3.17.6 BCBC-5B-0 14131303 P226220 Pdx1 P226220 Pdx1 Unique Tile chr2:134979252-134980154 (+) 0 TTCGCCTTTGTCTTTGCTTTTT GTCACTAAAGGGTCAGGAGTCCA 3 6 18 1.1.1.3.18.6 BCBC-5B-0 14131322 P226196 Tex264 Pdx1 P226196 Pdx1 Unique Tile chr9:106533675-106534576 (+) NM_011573 - 9192 106543768 21767 Tex264 TEG-264 testis expressed gene 264 MGI:1096570 Mm.22266; Mm.394075; Mm.22266; Mm.394075; Mm.22266; Mm.394075; Mm.22266; Mm.394075; Mm.22266; Mm.394075; Mm.22266; Mm.394075; Mm.22266; Mm.394075; Mm.22266; Mm.394075; Mm.22266; Mm.394075 9 9 F1 TEX264 51368 0 CAGATTCTGCTGTCTTGTCCTCA GGAGAGAAATGAGAAGGCTCCAT 3 6 19 1.1.1.3.19.6 BCBC-5B-0 14131341 P003087 Blank P003087 Buffer Control Negative Blank 3 6 20 1.1.1.3.20.6 BCBC-5B-0 14130981 P211418 PufferfishHuman P211418 PufferfishHuman Unique Tile chr3:134239713-134240724 (+) 0 CAAATTCACCCGTGCACTAATTT TAATCAGGGAGCGAGTTCTATGC 3 7 1 1.1.1.3.1.7 BCBC-5B-0 14131000 P212258 miRNA P212258 miRNA Unique Tile chr6:28967344-28968295 (+) mmu-mir-129-1 0 AGTGCACTGGTAGGAAGCCACTA AAAACACAGAGAGGGAAGGGAAC 3 7 2 1.1.1.3.2.7 BCBC-5B-0 14131019 P213380 Resp18 Enhancer P213380 Enhancer Unique Tile chr1:75165584-75166494 (-) NM_009049 - 4056 75161528 19711 Resp18 AI851012 regulated endocrine-specific protein 18 MGI:1098222 Mm.4032 1 1 C3 RESP18 389075 NM_008985 - 18284 75147300 19275 Ptprn 0 GATCCTCCTGAGTCCAAGGAAAT TTGCTGTTTGTTAGATGGGGATT 3 7 3 1.1.1.3.3.7 BCBC-5B-0 14131038 P214130 Rps6ka2 Enhancer P214130 Enhancer Unique Tile chr17:7023429-7024368 (+) NM_011299 + 3567 7019862 20112 Rps6ka2 90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk ribosomal protein S6 kinase, polypeptide 2 Mm.268383; Mm.412422; Mm.268383; Mm.412422; Mm.268383; Mm.412422; Mm.268383; Mm.412422; Mm.268383; Mm.412422; Mm.268383; Mm.412422; Mm.268383; Mm.412422; Mm.268383; Mm.412422; Mm.268383; Mm.412422; Mm.268383; Mm.412422; Mm.268383; Mm.412422; Mm.268383; Mm.412422; Mm.268383; Mm.412422; Mm.268383; Mm.412422; Mm.268383; Mm.412422; Mm.268383; Mm.412422 17 17 F4|17 3.65 cM 0 TCTGGTAACTAGAAGCTCCCGTG GCTTTCTTAACATCCGTGATTGG 3 7 4 1.1.1.3.4.7 BCBC-5B-0 14131057 P215252 Crip2 Enhancer P215252 Enhancer Unique Tile chr12:113583961-113585016 (+) NM_024223 + 3338 113588354 68337 Crip2 0610010I23Rik|AW743261|C77570|CRP2|Crp|ESP1|Hlp cysteine rich protein 2 MGI:1915587 Mm.133825 12 12 F1|12 58.7 cM CRIP2 1397 NM_007763 + 14803 113599819 12925 Crip1 0 ACCTGGGCTGTAAGTTAGCTGTG GGTGGGGTTTTCCTTTTTATGAG 3 7 5 1.1.1.3.5.7 BCBC-5B-0 14131076 P216092 Syvn1 Enhancer P216092 Enhancer Unique Tile chr19:6047239-6048206 (+) NM_028769 + 95 6047144 74126 Syvn1 1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1 synovial apoptosis inhibitor 1, synoviolin MGI:1921376 Mm.149870; Mm.407726; Mm.149870; Mm.407726; Mm.149870; Mm.407726; Mm.149870; Mm.407726; Mm.149870; Mm.407726; Mm.149870; Mm.407726; Mm.149870; Mm.407726; Mm.149870; Mm.407726; Mm.149870; Mm.407726; Mm.149870; Mm.407726; Mm.149870; Mm.407726 19 19 A SYVN1 84447 NM_026246 - 9535 6057741 18120 Mrpl49 1 TGTCAGATGGCTGGAGACCTTAG GACAGGTCCCCAAGACTGTCATA 3 7 6 1.1.1.3.6.7 BCBC-5B-0 14131095 P216842 BC018242 Enhancer P216842 Enhancer Unique Tile chr9:21683702-21684711 (+) NM_144935 + 3964 21688675 235044 BC018242 MGC25492|PRG-4 cDNA sequence BC018242 MGI:2384575 Mm.277521 9 9 A3 LPPR2 64748 NM_025977 + 5830 21677872 67119 2510048L02Rik 0 GACTGAAAAGGTGGAAGGACTGA TTCCAGATGGAGTGGGTAGAGAG 3 7 7 1.1.1.3.7.7 BCBC-5B-0 14131114 P217964 Ccdc120 Enhancer P217964 Enhancer Unique Tile chrX:6896462-6897414 (-) NM_207202 - 869 6898283 54648 Ccdc120 AA030924|DXImx50e|Jm11|MGC56838|Sfc25 coiled-coil domain containing 120 MGI:1859619 Mm.63342 X X A1.1|X 1.6 cM CCDC120 90060 NM_138602 + 10933 6885529 54637 Praf2 0 CTGGAATGTGGTAGATTGCCTTC CTTGTGCTTTTCTGGAGTTTGCT 3 7 8 1.1.1.3.8.7 BCBC-5B-0 14131133 P218632 Map3k1 ProximalPromoter P218632 ProximalPromoter Unique Tile chr13:112929846-112930857 (-) NM_011945 - 15 112929861 26401 Map3k1 MAPKKK1|MEKK1|Mekk mitogen activated protein kinase kinase kinase 1 MGI:1346872 Mm.15918 13 13 D2.2|13 60.0 cM MAP3K1 4214 1 CTTTATCCCGTTGAAAAAGGGTC ATTTTCTCTCGCGGGCTACAT 3 7 9 1.1.1.3.9.7 BCBC-5B-0 14131152 P219472 Hspa4l Enhancer P219472 Enhancer Unique Tile chr3:40842383-40843416 (+) NM_011020 + 222 40842161 18415 Hspa4l 94kDa|AI461691|APG-1|MGC117843|Osp94 heat shock protein 4 like MGI:107422 Mm.39330 3 3 B HSPA4L 22824 NM_178386 + 36903 40805480 73333 Slc25a31 0 GTGACAGGTGCAGCGTCTACAG AAAGAGGAGGCCTAAAACATTGC 3 7 10 1.1.1.3.10.7 BCBC-5B-0 14131171 P220594 Olfr695 ProximalPromoter P220594 ProximalPromoter Unique Tile chr7:106508247-106509235 (-) NM_146598 - 81 106508328 258591 Olfr695 MGC123710|MGC123711|MOR283-6 olfactory receptor 695 MGI:3030529 Mm.389952 7 - NM_146452 - 24869 106483378 258444 Olfr694 0 CTCTGAGAAGGGAAGATGGTGAA AGAGCATTTCTGGAAAACCACTG 3 7 11 1.1.1.3.11.7 BCBC-5B-0 14131190 P221344 Sap30 Enhancer P221344 Enhancer Unique Tile chr8:60378505-60379457 (-) NM_021788 - 542 60379999 60406 Sap30 30kDa sin3 associated polypeptide MGI:1929129 Mm.118 8 8 B2|8 31.0 cM SAP30 8819 NM_008252 + 24560 60404017 97165 Hmgb2 0 CTTCAGCAAAAGGATCCAGAAGA ACTGAGCTGATTGACACTCTCCC 3 7 12 1.1.1.3.12.7 BCBC-5B-0 14131209 P222466 Mpp3 Enhancer P222466 Enhancer Unique Tile chr11:101841867-101842690 (-) NM_007863 - 305 101842995 13384 Mpp3 6430514B01|Dlgh3 membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3) MGI:1328354 Mm.20449 11 11 D|11 60.0 cM MPP3 4356 NM_027987 + 14947 101857637 52685 Cd300lg 2 AGTGTGTGTTTGTGTGGGGAAGT CAGCTGTCCCTACAGTTTGTGTG 3 7 13 1.1.1.3.13.7 BCBC-5B-0 14131228 P223306 Wibg Enhancer P223306 Enhancer Unique Tile chr10:128150736-128151800 (-) NM_030100 + 174 128150910 78428 Wibg A030010B05Rik|Pym within bgcn homolog (Drosophila) MGI:1925678 Mm.27358 10 10 D3 WIBG 84305 NM_016811 - 3731 128147005 13139 Dgka 0 GTACGGGACTCCAACAGCTAGAA GGTAGCCAAAGCTAATCCGAAGT 3 7 14 1.1.1.3.14.7 BCBC-5B-0 14131247 P224056 Nags ProximalPromoter P224056 ProximalPromoter Unique Tile chr11:101960629-101961615 (+) NM_145829;NM_178053; + 23 101961638 217214 Nags 1700120E20Rik|AI415708|argA N-acetylglutamate synthase MGI:2387600 Mm.31686 11 11 D NAGS 162417 NM_029649 - 10836 101972451 76547 Tmem101 0 ACCAGCCCAAATGAGATTTTCTT GCACTAGGGGTTCTTAACTTGCC 3 7 15 1.1.1.3.15.7 BCBC-5B-0 14131266 P225178 9130022K13Rik ProximalPromoter P225178 ProximalPromoter Unique Tile chr15:77226363-77227377 (-) NM_029419 - 2 77226365 75761 9130022K13Rik - RIKEN cDNA 9130022K13 gene MGI:1923011 Mm.232636 15 15 E1 NM_173743 - 10978 77238355 71898 2310016F22Rik 0 TCTGTAACTCCTTCCATGGGTGT AGCAAAAGCTTCCTTCTTCCAGT 3 7 16 1.1.1.3.16.7 BCBC-5B-0 14131285 P227570 Pdx1 P227570 Pdx1 Unique Tile chr10:119127419-119128375 (+) 0 ATCTCCAAGGATTTTCCGACTTC GATGGACAAGAGGATGAGAGGAA 3 7 17 1.1.1.3.17.7 BCBC-5B-0 14131304 P227066 Anks6 Pdx1 P227066 Pdx1 Unique Tile chr4:47044393-47045320 (+) NM_001024136 - 33086 47078406 75691 Anks6 2210417J20Rik|Ankrd14|Gm635|Samd6 ankyrin repeat and sterile alpha motif domain containing 6 MGI:1922941 Mm.86866 4 4 B1 ANKS6 203286 0 TATAACACCAGGCATTGATGTGG TTCTCTCCTCTCTTGCATCTGCT 3 7 18 1.1.1.3.18.7 BCBC-5B-0 14131323 P226172 Pdx1 P226172 Pdx1 Unique Tile chr2:135018000-135018901 (+) 0 TCTTTGGGTTATTTGCCATTGAG CACTTGCCTAGTCTGCAAAAGGT 3 7 19 1.1.1.3.19.7 BCBC-5B-0 14131342 P003303 Blank P003303 Buffer Control Negative Blank 3 7 20 1.1.1.3.20.7 BCBC-5B-0 14130982 P211484 Lhx9 PufferfishHuman P211484 PufferfishHuman Unique Tile chr1:140644778-140645687 (+) NM_001025565;NM_001042577;NM_010714; - 13168 140658855 16876 Lhx9 BB104635|LH2B LIM homeobox protein 9 MGI:1316721 Mm.250732 1 1 G-H2 LHX9 56956 0 GCCAGCTTGCTCTGGTTTAGATA GCAAAATTGTCCATGTTCCTTTG 3 8 1 1.1.1.3.1.8 BCBC-5B-0 14131001 P212234 miRNA P212234 miRNA End Repeat Tile chr9:41334752-41335652 (-) mmu-mir-125b-1 0 AAGGAAGGAAGGAAGGAAGGAAG AAACGGGTGCATGATCAATAAAG 3 8 2 1.1.1.3.2.8 BCBC-5B-0 14131020 P213356 2610524G07Rik Enhancer P213356 Enhancer Unique Tile chr13:55334876-55335827 (-) NM_025596 + 2998 55331878 66494 2610524G07Rik Preli RIKEN cDNA 2610524G07 gene MGI:1913744 Mm.315430; Mm.389087; Mm.315430; Mm.389087; Mm.315430; Mm.389087; Mm.315430; Mm.389087; Mm.315430; Mm.389087; Mm.315430; Mm.389087; Mm.315430; Mm.389087; Mm.315430; Mm.389087; Mm.315430; Mm.389087; Mm.315430; Mm.389087; Mm.315430; Mm.389087; Mm.315430; Mm.389087; Mm.315430; Mm.389087; Mm.315430; Mm.389087; Mm.315430; Mm.389087 13 13 B2 PX19 27166 NM_009000 - 3309 55331567 19336 Rab24 0 GTTCTACAGAAGCTGGAGGAGCA CATGATTTGATTAGCCCCAGTTC 3 8 3 1.1.1.3.3.8 BCBC-5B-0 14131039 P214106 Rbp1 Enhancer P214106 Enhancer Unique Tile chr9:98234372-98235350 (+) NM_011254 + 187 98234185 19659 Rbp1 CRBPI|Crbp|Rbp-1 retinol binding protein 1, cellular MGI:97876 Mm.279741 9 9 E3.3|9 52.0 cM RBP1 5947 0 TGAGAATTTCGAGGAGTACCTGC TTCTCCTCTCTTTCTGCTCTCCA 3 8 4 1.1.1.3.4.8 BCBC-5B-0 14131058 P214946 Tmem27 Enhancer P214946 Enhancer Unique Tile chrX:159437140-159438077 (+) NM_020626 + 2771 159434369 57394 Tmem27 0610008J07Rik|NX-17|NX17|NX=17|collectrin transmembrane protein 27 MGI:1926234 Mm.143766 X X F5 TMEM27 57393 NM_009173 - 16900 159420240 20438 Siah1b 0 TGCTTTGGATGTTGGAGTGAGTA TGCCAGTGTAGCAAACAAAAATG 3 8 5 1.1.1.3.5.8 BCBC-5B-0 14131077 P216068 2410075D05Rik Enhancer P216068 Enhancer Unique Tile chr10:30289054-30290065 (-) NM_028604 - 16 30290081 73681 2410075D05Rik 3110045I18Rik|AW213713 RIKEN cDNA 2410075D05 gene MGI:1920931 Mm.294503 10 10 A4 C6orf75 60487 NM_025798 - 17717 30307782 66847 Hint3 1 GGCTCCTTGAATCGCTATCTCTT CTCACCTCCTACATTGCCACTCT 3 8 6 1.1.1.3.6.8 BCBC-5B-0 14131096 P216818 Spg20 Enhancer P216818 Enhancer Unique Tile chr3:55200317-55201216 (+) NM_144895 + 249 55200068 229285 Spg20 AI840044|C79168|MGC28621|SPARTIN|TAHCCP1|mKIAA0610 spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) MGI:2139806 Mm.235523 3 3 C SPG20 23111 NM_177203 + 24051 55225267 320604 A730037C10Rik 0 AAGGAAGTTTCCAGAAGTCCTGC CCATTCCAACAATTCTTTCTTGC 3 8 7 1.1.1.3.7.8 BCBC-5B-0 14131115 P217940 Nexn Enhancer P217940 Enhancer Unique Tile chr3:152202506-152203451 (-) NM_199465 - 190 152203641 68810 Nexn 1110046H09Rik|AA553326|NELIN nexilin MGI:1916060 Mm.200188 3 3 H3 NEXN 91624 1 GAAGTCAGGGAGTTTTATGGGCT AAAACGCTTATCTCAAGCCACTG 3 8 8 1.1.1.3.8.8 BCBC-5B-0 14131134 P218698 Ksr1 Enhancer P218698 Enhancer Unique Tile chr11:78960955-78961969 (-) NM_013571 - 580 78962549 16706 Ksr1 AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb kinase suppressor of ras 1 MGI:105051 Mm.4745 11 11 B5|11 45.78 cM KSR1 8844 0 CCTATTTCCAGTGCCCACAGTAG AATAGCCAGCACTGTTTGGAGTC 3 8 9 1.1.1.3.9.8 BCBC-5B-0 14131153 P219448 Rfx2 Enhancer P219448 Enhancer Unique Tile chr17:56514852-56515838 (-) NM_009056 - 249 56516087 19725 Rfx2 - regulatory factor X, 2 (influences HLA class II expression) MGI:106583 Mm.102 17 17 D|17 36.0 cM RFX2 5990 NM_001039114 - 43733 56559571 328845 Acsbg2 0 GAACCCCTCTCACACTCTCAAAA GGAGTGTTCCGGAGACGTACTAA 3 8 10 1.1.1.3.10.8 BCBC-5B-0 14131172 P220570 Arx Enhancer P220570 Enhancer Unique Tile chrX:89535281-89536188 (+) NM_007492 + 3176 89539364 11878 Arx - aristaless related homeobox gene (Drosophila) MGI:1097716 Mm.275547 X X C3|X 33.9 cM ARX 170302 0 GAAAGCAGCGTTTGAGAAGGTTA AAATGACAATGATGGCTGGAAGT 3 8 11 1.1.1.3.11.8 BCBC-5B-0 14131191 P221320 Ifna13 ProximalPromoter P221320 ProximalPromoter Unique Tile chr4:88115632-88116563 (-) NM_177347 - 58 88115690 230396 Ifna13 - interferon alpha family, gene 13 MGI:2667155 Mm.246592 4 4 C4|4 42.6 cM NM_198663 - 10226 88105406 381590 C87499 1 TAGCTCTCACCCAGAATTGTTCC TGCAGATGCTTCTGGTATTCTGA 3 8 12 1.1.1.3.12.8 BCBC-5B-0 14131210 P222160 Tssk4 Enhancer P222160 Enhancer Unique Tile chr14:54605234-54606138 (+) NM_027673 + 980 54604254 71099 Tssk4 1700020B19Rik|4933424F08Rik testis-specific serine kinase 4 MGI:1918349 Mm.171300 14 14 C1 TSSK4 283629 NM_028780 - 7357 54597877 74140 Tm9sf1 0 ATGCATATTGCCCATTTTCTGTC CATTGCTGGGACCTAATTACCAA 3 8 13 1.1.1.3.13.8 BCBC-5B-0 14131229 P223282 Trim46 Enhancer P223282 Enhancer Unique Tile chr3:89330306-89331361 (+) NM_183037;NM_001039466; - 235 89331126 360213 Trim46 AI385631|MGC90834 tripartite motif protein 46 MGI:2673000 Mm.331156 3 3 F1 TRIM46 80128 NM_025327 + 531 89331892 66059 Krtcap2 1 CAGCAGTTCCTTCTCCATGTTCT CATGTGTGAGCTTGGATGTTTTC 3 8 14 1.1.1.3.14.8 BCBC-5B-0 14131248 P224032 H2afj ProximalPromoter P224032 ProximalPromoter Unique Tile chr6:136771461-136772383 (+) NM_177688 + 78 136772461 232440 H2afj E130307C13|MGC118637 H2A histone family, member J MGI:3606192 Mm.154564 6 6 G1 H2AFJ 55766 NM_175652 - 2886 136768575 320332 Hist4h4 0 CAGGCTCAATTCAAGTTCTCCAT ATCCAGATGTCTCCCAATCAAAA 3 8 15 1.1.1.3.15.8 BCBC-5B-0 14131267 P225154 ProximalPromoter P225154 ProximalPromoter Intra Repeat: LINE Tile chr10:58157345-58158294 (+) 0 ACACAACCGAAAATCTAGACCCA TGATTTCCGTCCTTGTATTGCTT 3 8 16 1.1.1.3.16.8 BCBC-5B-0 14131286 P227636 Pdx1 P227636 Pdx1 Unique Tile chr5:66669922-66670884 (+) 0 GATGCCCTCTTCTGGTGAGTCT ATGGCTTCTGCATCTAGTCTTGC 3 8 17 1.1.1.3.17.8 BCBC-5B-0 14131305 P227042 Apba2 Pdx1 P227042 Pdx1 Unique Tile chr7:64607219-64608145 (+) NM_007461 + 33237 64573982 11784 Apba2 X11-like|X11L|XllL|mXllL amyloid beta (A4) precursor protein-binding, family A, member 2 MGI:1261791 Mm.4657 7 7 C|7 25.5 cM APBA2 321 NM_183087 - 44441 64652586 70638 5730507A09Rik 0 TTGCAATCCTCTTTTTCTCCTTG GGAGGAGACTGCCTGTGAGTAGA 3 8 18 1.1.1.3.18.8 BCBC-5B-0 14131324 P226148 LOC632687 Pdx1 P226148 Pdx1 Unique Tile chr11:105235009-105235910 (+) NM_001039242 - 36904 105272814 632687 LOC632687 MGC118297 hypothetical protein LOC632686 Mm.275940 11 11 E1 0 GTCCCCAGAACCTAAGCAAAGTT TGGCCCTTTATTCTTCCTTCAGT 3 8 19 1.1.1.3.19.8 BCBC-5B-0 14131343 P003303 Blank P003303 Buffer Control Negative Blank 3 8 20 1.1.1.3.20.8 BCBC-5B-0 14130983 P211460 PufferfishHuman P211460 PufferfishHuman Unique Tile chr13:72494352-72495306 (+) 0 GTGTGAGGAGGTTATTTATGCGG ATGCGGATATAACCGTTTTCTGA 3 9 1 1.1.1.3.1.9 BCBC-5B-0 14131002 P212210 miRNA P212210 miRNA Unique Tile chr2:180320222-180321168 (-) mmu-mir-1-1 0 AAGGAGGACAAGGAGGAAGAAGA TCTATGCCCTACTCAATTCCAGC 3 9 2 1.1.1.3.2.9 BCBC-5B-0 14131021 P213332 Npepps Enhancer P213332 Enhancer Unique Tile chr11:97095076-97096004 (-) NM_008942 - 601 97096605 19155 Npepps MGC102199|MP100|Psa|R74825|goku aminopeptidase puromycin sensitive MGI:1101358 Mm.29824 11 11 D|11 56.0 cM NPEPPS 9520 NM_025927 + 35941 97131945 67036 Mrpl45 0 GAACTAGAAGGGGCTAGGACTGC GCAAAGCCAATGTTCCAAATCTA 3 9 3 1.1.1.3.3.9 BCBC-5B-0 14131040 P214172 Sox9 Enhancer P214172 Enhancer Unique Tile chr11:112599647-112600615 (+) NM_011448 + 1276 112598371 20682 Sox9 2010306G03Rik|AV220920|KIAA4243|mKIAA4243 SRY-box containing gene 9 MGI:98371 Mm.286407 11 11 E2|11 69.5 cM SOX9 6662 NM_027720 + 40653 112641268 71203 4933434M16Rik 0 GGAGCTATTTCCATCTTCAGGGT CGATAAGTCGCCGAATGATTAAC 3 9 4 1.1.1.3.4.9 BCBC-5B-0 14131059 P214922 Brd4 Enhancer P214922 Enhancer Unique Tile chr17:32012745-32013657 (-) NM_198094;NM_020508; - 192 32013849 57261 Brd4 Brd5|HUNK1|MCAP|WI-11513 bromodomain containing 4 MGI:1888520 Mm.253518 17 17 B2|17 20.0 cM BRD4 23476 NM_019774 - 39104 32052761 56399 Akap8 2 GAGTTCCCGCTTCATAGTCTCAC TTACAGATGGTTATGAGCCACCA 3 9 5 1.1.1.3.5.9 BCBC-5B-0 14131078 P216044 Txndc1 Enhancer P216044 Enhancer Unique Tile chr12:71371912-71372976 (+) NM_028339 + 154 71371758 72736 Txndc1 2810425A04Rik|AI465319 thioredoxin domain containing 1 MGI:1919986 Mm.204670 12 12 C2 TXNDC 81542 0 TGGATGATAGAATTGTGAGTGCG TTACTCTTGAAGCCCAACAAAGC 3 9 6 1.1.1.3.6.9 BCBC-5B-0 14131097 P216794 Mtmr6 Enhancer P216794 Enhancer Unique Tile chr14:59215394-59216351 (+) NM_144843 + 2986 59219337 219135 Mtmr6 4022440C11Rik|AI428804|AU041072|MGC27983 myotubularin related protein 6 MGI:2145637 Mm.247007 14 14 C3 MTMR6 9107 NM_170591 - 9875 59205519 71844 Nupl1 0 ATAAGCCACATGAACACCGATCT TCTTCCATGGAGCTCTAAACCAG 3 9 7 1.1.1.3.7.9 BCBC-5B-0 14131116 P217634 Impad1 Enhancer P217634 Enhancer Unique Tile chr4:4721565-4722485 (-) NM_177730 - 1112 4720453 242291 Impad1 1110001C20Rik|AA408880|AI451589|AL022796|B230207P20 inositol monophosphatase domain containing 1 MGI:1915720 Mm.218889; Mm.369779; Mm.392937; Mm.218889; Mm.369779; Mm.392937; Mm.218889; Mm.369779; Mm.392937; Mm.218889; Mm.369779; Mm.392937; Mm.218889; Mm.369779; Mm.392937; Mm.218889; Mm.369779; Mm.392937; Mm.218889; Mm.369779; Mm.392937; Mm.218889; Mm.369779; Mm.392937; Mm.218889; Mm.369779; Mm.392937; Mm.218889; Mm.369779; Mm.392937; Mm.218889; Mm.369779; Mm.392937 4 4 A1 IMPAD1 54928 0 TGCCAGCCAAACTTGATAGTGTA AGATTCGGTCTCAAAACCAAACA 3 9 8 1.1.1.3.8.9 BCBC-5B-0 14131135 P218674 Tcap Enhancer P218674 Enhancer Unique Tile chr11:98195771-98196769 (+) NM_011540 + 3131 98199900 21393 Tcap AI503981|AJ223855 titin-cap MGI:1330233 Mm.10762 11 11 D TCAP 8557 NM_008890 + 5952 98202721 18948 Pnmt 0 CCCAGTTATGGCTTACTGGACAT GCCACCTCTGCTTATCACAAAGT 3 9 9 1.1.1.3.9.9 BCBC-5B-0 14131154 P219424 Hist1h2ae ProximalPromoter P219424 ProximalPromoter Unique Tile chr13:23578668-23579643 (-) NM_178187 - 17 23578685 319166 Hist1h2ae 1190022L06 histone 1, H2ae MGI:2448290 Mm.261665 13 13 A2-A3 HIST1H2AE 3012 NM_178196 + 192 23578860 319181 Hist1h2bg 0 AACCTATCCTAGCACTCCCTTCG GTGGAAAAGCTGATGTGTGATTG 3 9 10 1.1.1.3.10.9 BCBC-5B-0 14131173 P220546 Dmrta1 ProximalPromoter P220546 ProximalPromoter Unique Tile chr4:89179302-89180212 (+) NM_175647 + 3 89180215 242523 Dmrta1 Dmrt4 doublesex and mab-3 related transcription factor like family A1 MGI:2653627 Mm.130167 4 4 C5 DMRTA1 63951 0 AGGTAGAGCCATTCCCACTTTTC CTAGAGTTTGCTGTCCTGTCCCA 3 9 11 1.1.1.3.11.9 BCBC-5B-0 14131192 P221386 Pi4k2b Enhancer P221386 Enhancer Unique Tile chr5:53030353-53031256 (+) NM_028744;NM_025951; + 439 53029914 67073 Pi4k2b 2610042N09Rik|4933409G22Rik phosphatidylinositol 4-kinase type 2 beta MGI:1914323 Mm.248647 5 5 C1 PI4K2B 55300 0 CAACACTGAGGGAAACTTCATCC TGGCTGAACAGAGATTTGTGAAA 3 9 12 1.1.1.3.12.9 BCBC-5B-0 14131211 P222136 Olfr1118 ProximalPromoter P222136 ProximalPromoter Unique Tile chr2:87108817-87109729 (+) NM_207632 + 100 87109629 404328 Olfr1118 MOR264-22 olfactory receptor 1118 MGI:3030952 Mm.377942 2 2 D NM_001011734 + 39133 87069684 257875 Olfr1116 0 CAAATTCACATGAAGAACACCAC TGTTGCACAACAGAATTGTCAT 3 9 13 1.1.1.3.13.9 BCBC-5B-0 14131230 P223258 Rps21 Enhancer P223258 Enhancer Unique Tile chr2:180190555-180191468 (+) NM_025587 + 3717 180186838 66481 Rps21 1810049N11Rik|2410030A14Rik|MGC107620 ribosomal protein S21 MGI:1913731 Mm.289669 2 2 H4 RPS21 6227 NM_145851 - 11405 180202873 252966 Cables2 0 GGATTGTATTCCACTGCATCTCC ATTAAGGCACAGTATTGGGAGCA 3 9 14 1.1.1.3.14.9 BCBC-5B-0 14131249 P224008 Kcns2 Enhancer P224008 Enhancer Unique Tile chr15:34782436-34783445 (+) NM_181317 + 201 34782637 16539 Kcns2 E130006J24Rik|Kv9.2 K+ voltage-gated channel, subfamily S, 2 MGI:1197011 Mm.398087; Mm.71045; Mm.398087; Mm.71045; Mm.398087; Mm.71045; Mm.398087; Mm.71045; Mm.398087; Mm.71045; Mm.398087; Mm.71045; Mm.398087; Mm.71045; Mm.398087; Mm.71045; Mm.398087; Mm.71045; Mm.398087; Mm.71045 15 15 B3.1 KCNS2 3788 0 ACCCAGGTAAGCGCTTTTAGAAC TATAGCTGCAGCAAGAGTCGATG 3 9 15 1.1.1.3.15.9 BCBC-5B-0 14131268 P224848 Kbtbd7 ProximalPromoter P224848 ProximalPromoter Unique Tile chr14:78159593-78160593 (+) NM_001024135 + 72 78160665 211255 Kbtbd7 1110008P08Rik|AU045792|Gm295 kelch repeat and BTB (POZ) domain containing 7 MGI:2685141 Mm.284526; Mm.396470; Mm.284526; Mm.396470; Mm.284526; Mm.396470; Mm.284526; Mm.396470; Mm.284526; Mm.396470; Mm.284526; Mm.396470; Mm.284526; Mm.396470 14 14 D3 KBTBD7 84078 NM_001034882 + 25396 78185989 432879 LOC432879 0 CAGTCTTTTAATGGCTCATGGCT GGACGAACTACTCTTCCCAGGTT 3 9 16 1.1.1.3.16.9 BCBC-5B-0 14131287 P227612 Pdx1 P227612 Pdx1 Unique Tile chr16:43108202-43109161 (+) 0 CCGAATAATTCCACCTCTCAGTG ATGGCTTTTCCATGTGTCCATAG 3 9 17 1.1.1.3.17.9 BCBC-5B-0 14131306 P227018 Pdx1 P227018 Pdx1 Unique Tile chr12:29953949-29954875 (+) 2 GAGAGAGAGAGAGAGGTGGGGTC GATGTCTGACAGCCCAGAGAGAT 3 9 18 1.1.1.3.18.9 BCBC-5B-0 14131325 P226124 Pdx1 P226124 Pdx1 Unique Tile chr6:53689872-53690772 (+) 0 TTTTCTCTCTCTCTCTCCCTCCC CTGGGAATGCGTTTTTCATTTAG 3 9 19 1.1.1.3.19.9 BCBC-5B-0 14131344 P003255 Blank P003255 Buffer Control Negative Blank 3 9 20 1.1.1.3.20.9 BCBC-5B-0 14130984 P211436 PufferfishHuman P211436 PufferfishHuman Unique Tile chr18:13933126-13934140 (+) 0 GTGGAGGAGCAGGGACTAAAAAT AGCAACCATGTTCCTTTTGTGTT 3 10 1 1.1.1.3.1.10 BCBC-5B-0 14131003 P212186 miRNA P212186 miRNA Unique Tile chr9:106035737-106036712 (+) mmu-let-7g 0 TTGACTGATTTCCCCTCGAATAA TTATCCTTATCCAAAAGCATCGG 3 10 2 1.1.1.3.2.10 BCBC-5B-0 14131022 P213026 Fgfr3 Enhancer P213026 Enhancer Unique Tile chr5:34039825-34040613 (+) NM_008010 + 1155 34038670 14184 Fgfr3 Fgfr-3|HBGFR fibroblast growth factor receptor 3 MGI:95524 Mm.6904 5 5 B|5 20.0 cM FGFR3 2261 0 CATGACAAGGTGACAGCTTCAGT CACCCGACGCAAGAAGTAATATC 3 10 3 1.1.1.3.3.10 BCBC-5B-0 14131041 P214148 Itsn2 Enhancer P214148 Enhancer Unique Tile chr12:4623464-4624393 (+) NM_011365 + 16500 4606964 20403 Itsn2 AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256 intersectin 2 MGI:1338049 Mm.341204 12 12 A1.1 ITSN2 50618 0 GCTGGAGGGAATGTCTGAAAGTA CTGTTTATGGCCTCCTGCATAAC 3 10 4 1.1.1.3.4.10 BCBC-5B-0 14131060 P214898 Ubiad1 Enhancer P214898 Enhancer Unique Tile chr4:147287786-147288712 (+) NM_027873 - 161 147288551 71707 Ubiad1 1200002M06Rik|AI426463|AW320947|Tere1 UbiA prenyltransferase domain containing 1 MGI:1918957 Mm.292503 4 4 E1 UBIAD1 29914 NM_020009 + 3694 147292406 56717 Frap1 0 CAATTTCAGAGCGGACAGGTAGT GCTAAACAGCTGCTTCTTTCCAG 3 10 5 1.1.1.3.5.10 BCBC-5B-0 14131079 P216020 2510003E04Rik Enhancer P216020 Enhancer Unique Tile chr10:61976950-61977989 (-) NM_028197 - 3136 61973814 72320 2510003E04Rik 0710007C18Rik|MGC107132|mKIAA1279 RIKEN cDNA 2510003E04 gene MGI:1919570 Mm.258955 10 10 B4 KIAA1279 26128 NM_019553 - 19626 61997615 56200 Ddx21 0 CATGGAACAAACCTTCTACCCAC CTAGACATGTTAGGCATTTGGGC 3 10 6 1.1.1.3.6.10 BCBC-5B-0 14131098 P216860 Rnh1 Enhancer P216860 Enhancer Unique Tile chr7:141023412-141024344 (-) NM_145135 - 3403 141020009 107702 Rnh1 AW546468|C80305|RNH ribonuclease/angiogenin inhibitor 1 MGI:1195456 Mm.279485 7 7 F5 RNH1 6050 NM_008284 - 19916 141044260 15461 Hras1 0 TCAGTTTCTAACAATGAGGGCGT GGGCTACTTTCAGATTTCCCACT 3 10 7 1.1.1.3.7.10 BCBC-5B-0 14131117 P217610 Pcyt1b Enhancer P217610 Enhancer End Repeat Tile chrX:89910040-89911051 (+) NM_177546;NM_211138; + 2459 89907581 236899 Pcyt1b AW045697|CTTbeta phosphate cytidylyltransferase 1, choline, beta isoform MGI:2147987 Mm.166467 X X C3 PCYT1B 9468 NM_008892 - 25166 89884874 18968 Pola1 1 AGTCTCCTCATTTGCATAGTGCC ACACACACACACACACACACACA 3 10 8 1.1.1.3.8.10 BCBC-5B-0 14131136 P218650 Mx1 Enhancer P218650 Enhancer Unique Tile chr16:97569352-97570302 (-) NM_010846 - 1537 97567815 17857 Mx1 AI893580|Mx|Mx-1 myxovirus (influenza virus) resistance 1 MGI:97243 Mm.33996 16 16 71.2 cM MX2 4600 0 AGATGTGTCCAAGACCCCATAGA CCTTCCTTTCTTTCTGCTTCTCC 3 10 9 1.1.1.3.9.10 BCBC-5B-0 14131155 P219400 Olfr586 ProximalPromoter P219400 ProximalPromoter Unique Tile chr7:102996597-102997562 (-) NM_147111 - 5 102996602 259115 Olfr586 MGC123788|MGC123800|MGC123801|MOR8-2|MOR8-7 olfactory receptor 586 MGI:3030420 Mm.223485 7 - NM_147087 + 25034 102971563 259091 Olfr585 0 AGTGAAAGAAAACAGGGAGGAGG TATGCATGGAATCAAGATGGATG 3 10 10 1.1.1.3.10.10 BCBC-5B-0 14131174 P220240 Wdr22 ProximalPromoter P220240 ProximalPromoter Unique Tile chr12:81355232-81356176 (-) NM_177267 - 155 81355387 320808 Wdr22 9430020B07Rik|AI325023|AI848110|AW124614|BCRG2|BCRP2|mKIAA1824 WD repeat domain 22 MGI:2444785 Mm.220310 12 12 D1 WDR22 8816 NM_133798 + 38665 81394841 97827 Exdl2 1 TTCTCACTTTCTTTTGGGAGTGG AGCTCTCCTCTTCATGCTGGAAC 3 10 11 1.1.1.3.11.10 BCBC-5B-0 14131193 P221362 V1rd9 ProximalPromoter P221362 ProximalPromoter Duplication Tile chr7:23367374-23368353 (+) NM_030735 + 1278 23367075 81010 V1rd9 V3R9 vomeronasal 1 receptor, D9 MGI:3033478 Mm.379267 7 7 A3 NM_030737 + 26627 23340747 81012 V1rd7 1 CCCAAAAGTGTATGTTTCATGGG TTTTCCTGGGTAAGAAGACACCA 3 10 12 1.1.1.3.12.10 BCBC-5B-0 14131212 P222112 Cma1 Enhancer P222112 Enhancer Unique Tile chr14:54899781-54900692 (-) NM_010780 - 1049 54898732 17228 Cma1 MMCP-5|Mcp-5|Mcpt5 chymase 1, mast cell MGI:96941 Mm.1252 14 14 C3|14 20.0 cM CMA1 1215 NM_001024714 + 24806 54925498 545055 Cma2 0 TTGTGCTCATGTCTTGGAACACT TCTTCTCGATGCTTCTCTGGACT 3 10 13 1.1.1.3.13.10 BCBC-5B-0 14131231 P223234 Zfp637 ProximalPromoter P223234 ProximalPromoter Unique Tile chr6:117805752-117806686 (+) NM_177684 + 174 117806860 232337 Zfp637 BC021601|MGC54806 zinc finger protein 637 MGI:2448537 Mm.290847 6 6 F1 ZNF32 7580 NM_008616;NM_001001792; + 22009 117828695 22685 Zfp239 0 CCTAATCCCACATCTGGTCTCAC GTTGAAGCTTGGGAATGCTTATG 3 10 14 1.1.1.3.14.10 BCBC-5B-0 14131250 P224074 Mapk13 Enhancer P224074 Enhancer Unique Tile chr17:28493936-28495020 (+) NM_011950 + 1916 28496936 26415 Mapk13 SAPK4|Serk4 mitogen activated protein kinase 13 MGI:1346864 Mm.27970 17 17 A3-B MAPK13 5603 0 TGACTCTGCTCACTGGATTGAAG TTGATTTCTAAGGCCACGTGAAT 3 10 15 1.1.1.3.15.10 BCBC-5B-0 14131269 P224824 Tmprss13 ProximalPromoter P224824 ProximalPromoter Unique Tile chr9:45069017-45069916 (+) NM_001013373 + 178 45070094 214531 Tmprss13 BC010843|MGC103261|Tpmrss13 transmembrane protease, serine 13 MGI:2682935 Mm.234192; Mm.394987; Mm.234192; Mm.394987; Mm.234192; Mm.394987; Mm.234192; Mm.394987; Mm.234192; Mm.394987; Mm.234192; Mm.394987; Mm.234192; Mm.394987 9 9 A5.2 TMPRSS13 84000 NM_008348 - 48876 45020141 16154 Il10ra 2 CCTAATTGTCAGGGCATTCTCAG CAGCTAATACCTGGGCTCTTGAA 3 10 16 1.1.1.3.16.10 BCBC-5B-0 14131288 P227588 Pdx1 P227588 Pdx1 Unique Tile chr13:30459239-30460196 (+) 0 ATTGAGGTGGAAGGAAACACGTA TTGCGTTCACTGAATGAGTTGTT 3 10 17 1.1.1.3.17.10 BCBC-5B-0 14131307 P226994 Mid2 Pdx1 P226994 Pdx1 Unique Tile chrX:136002657-136003581 (+) NM_011845 + 7738 136011319 23947 Mid2 FXY2|Trim1 midline 2 MGI:1344333 Mm.131097 X X F1|X 60.5 cM MID2 11043 0 CAAACCACAACATACAACATTGC ATTGGCCCATGATTATAGCCTCT 3 10 18 1.1.1.3.18.10 BCBC-5B-0 14131326 P227258 Pdx1 P227258 Pdx1 Unique Tile chr12:82100865-82101801 (+) 0 CACCTCTCTGGATTTCAATGTCC CTGCCCAACCTCAGAGTCTACAT 3 10 19 1.1.1.3.19.10 BCBC-5B-0 14131345 P003255 Blank P003255 Buffer Control Negative Blank 3 10 20 1.1.1.3.20.10 BCBC-5B-0 14130985 P211412 Kctd15 PufferfishHuman P211412 PufferfishHuman Unique Tile chr7:34364333-34365385 (-) NM_146188 - 2732 34361601 233107 Kctd15 BC031749|MGC25497 potassium channel tetramerisation domain containing 15 MGI:2385276 Mm.214380; Mm.407585; Mm.214380; Mm.407585; Mm.214380; Mm.407585; Mm.214380; Mm.407585; Mm.214380; Mm.407585; Mm.214380; Mm.407585 7 7 B1 KCTD15 79047 2 TGACAAGAAGAGAGGGGGTACTG CCTCCTCCTCGACCATTTCTC 3 11 1 1.1.1.3.1.11 BCBC-5B-0 14131004 P212252 miRNA P212252 miRNA Unique Tile chr6:28972476-28973546 (-) mmu-mir-129-1 0 CTAAGGATGACTGACCGCAGATT AATTTATCCTAAGGCTCCCCCTC 3 11 2 1.1.1.3.2.11 BCBC-5B-0 14131023 P213002 Mark2 Enhancer P213002 Enhancer Unique Tile chr19:7407142-7408135 (-) NM_007928 - 225 7408360 13728 Mark2 AU024026|Emk|KIAA4207|Par-1|mKIAA4207 MAP/microtubule affinity-regulating kinase 2 MGI:99638 Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228; Mm.258986; Mm.283859; Mm.393228 19 19 B|19 3.0 cM MARK2 2011 NM_001033139 - 41735 7449870 68229 AI846148 0 CTCGTGCTCCTGCTTTCTTCTAC GGGAAGGTTGAGCAATAGGAAGT 3 11 3 1.1.1.3.3.11 BCBC-5B-0 14131042 P214124 Mrpl23 Enhancer P214124 Enhancer Unique Tile chr7:142342716-142343664 (+) NM_011288 + 150 142342566 19935 Mrpl23 L23mrp|Rpl23|Rpl23l mitochondrial ribosomal protein L23 MGI:1196612 Mm.12144; Mm.314652; Mm.12144; Mm.314652; Mm.12144; Mm.314652; Mm.12144; Mm.314652; Mm.12144; Mm.314652; Mm.12144; Mm.314652; Mm.12144; Mm.314652; Mm.12144; Mm.314652; Mm.12144; Mm.314652 7 7 F5|7 69.0 cM MRPL23 6150 NM_011620 + 34463 142308253 21957 Tnnt3 2 GCTTAGTGTCCTGGCTGTCAATC GACTCATAGTTCATGGTCCCCAG 3 11 4 1.1.1.3.4.11 BCBC-5B-0 14131061 P214874 Mpp6 Enhancer P214874 Enhancer Unique Tile chr6:50039965-50040948 (+) NM_019939 + 3 50039962 56524 Mpp6 P55t|Pals2 membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) MGI:1927340 Mm.41288 6 6 B2.3 MPP6 51678 1 GAGCCCCTGAGTCGGTAGATG CCAAGTGAAGACCAATTTAACGC 3 11 5 1.1.1.3.5.11 BCBC-5B-0 14131080 P215714 Enhancer P215714 Enhancer No Hits Tile 1 ttaggagcagagtcaacggtagg gcagttgtcccaagtggagtatc 3 11 6 1.1.1.3.6.11 BCBC-5B-0 14131099 P216836 Akt1s1 Enhancer P216836 Enhancer Unique Tile chr7:44720443-44721381 (-) NM_026270 + 3175 44717268 67605 Akt1s1 1110012J22Rik|AI227026|Lobe|Lobel|PRAS40 AKT1 substrate 1 (proline-rich) MGI:1914855 Mm.148007; Mm.398123; Mm.148007; Mm.398123; Mm.148007; Mm.398123; Mm.148007; Mm.398123; Mm.148007; Mm.398123; Mm.148007; Mm.398123; Mm.148007; Mm.398123; Mm.148007; Mm.398123; Mm.148007; Mm.398123; Mm.148007; Mm.398123 7 7 B2 AKT1S1 84335 NM_144924 - 3322 44717121 233204 Tbc1d17 2 GTATGGAAAATGCTGTCTTTGGC AGCAAGCTAGGACTGGGAAAGAT 3 11 7 1.1.1.3.7.11 BCBC-5B-0 14131118 P217586 Zhx3 Enhancer P217586 Enhancer Unique Tile chr2:160563128-160564211 (-) NM_177263 - 220 160564431 320799 Zhx3 1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395 zinc fingers and homeoboxes 3 MGI:2444772 Mm.389359; Mm.44463; Mm.389359; Mm.44463; Mm.389359; Mm.44463; Mm.389359; Mm.44463; Mm.389359; Mm.44463; Mm.389359; Mm.44463; Mm.389359; Mm.44463; Mm.389359; Mm.44463; Mm.389359; Mm.44463; Mm.389359; Mm.44463; Mm.389359; Mm.44463; Mm.389359; Mm.44463; Mm.389359; Mm.44463; Mm.389359; Mm.44463; Mm.389359; Mm.44463; Mm.389359; Mm.44463; Mm.389359; Mm.44463 2 2 H2 ZHX3 23051 NM_022883 + 7962 160572173 64899 Lpin3 0 AACGTCCCCAGAGCTGTCAGT AGAAGCAAATTAAGCCCGAAATC 3 11 8 1.1.1.3.8.11 BCBC-5B-0 14131137 P218626 ProximalPromoter P218626 ProximalPromoter Unique Tile chr3:132775136-132776074 (+) 0 GAGCTATGCAAAAGTGACAGCAA AGAAAAGTGTTCTGTGGCAAAGC 3 11 9 1.1.1.3.9.11 BCBC-5B-0 14131156 P219466 Olfr399 ProximalPromoter P219466 ProximalPromoter Unique Tile chr11:73870954-73871908 (-) NM_147004 - 2 73870952 259006 Olfr399 MOR255-1 olfactory receptor 399 MGI:3030233 Mm.377785 11 - OR3A4 390756 NM_147003 - 9487 73861467 259005 Olfr139 0 AATCCAAGGCTGCTTGTTATCAG CCTCTCTTCCACCAGTGACAGTT 3 11 10 1.1.1.3.10.11 BCBC-5B-0 14131175 P220216 Sdro Enhancer P220216 Enhancer Unique Tile chr10:127304708-127305716 (+) NM_027301 + 3225 127301483 70061 Sdro 1810054F20Rik|Rdhs|SDR-O orphan short chain dehydrogenase/reductase MGI:1917311 Mm.158320 10 10 D3 SDR-O 121214 NM_017473 - 13060 127291648 54150 Rdh7 0 AGATGAATGCACAGATGGACTGA CATCTCTCTCCCCTTCTCTCTCC 3 11 11 1.1.1.3.11.11 BCBC-5B-0 14131194 P221338 Mcpt6 Enhancer P221338 Enhancer Unique Tile chr17:25094331-25095274 (+) NM_010781 + 182 25094149 17229 Mcpt6 AV011504|MMCP-6|Mcp-6 mast cell protease 6 MGI:96942 Mm.7409 17 17 A3.3|17 10.39 cM TPSAB1 7177 NM_012034 + 2909 25098183 26945 Tpsg1 0 CATGGAGGTTGCTTCTTGTCTCT AGACAGGGGTCAGCACACAGTAT 3 11 12 1.1.1.3.12.11 BCBC-5B-0 14131213 P222088 2010003O18Rik ProximalPromoter P222088 ProximalPromoter Unique Tile chr5:115602336-115603235 (-) NM_029645 - 176 115602160 384281 2010003O18Rik - RIKEN cDNA 2010003O18 gene MGI:1923776 Mm.229308 5 5 F 15E1.2 283459 NM_026933 + 88 115602248 69076 Triap1 0 AGGTAGCTTCTGGAATGGAGAGG TTTGCTGAGAAGTTCCTCAAAGG 3 11 13 1.1.1.3.13.11 BCBC-5B-0 14131232 P222928 Ergic2 ProximalPromoter P222928 ProximalPromoter Unique Tile chr6:148169298-148170260 (-) NM_026168;NM_026355; - 41 148169257 67456 Ergic2 1200009B18Rik|4930572C01Rik|AA408438|Ptx1 ERGIC and golgi 2 MGI:1914706 Mm.59812 6 6 G3 ERGIC2 51290 0 CCATTTGACAGATGAGGGGATAG GGTATGTGATCTAATCAAGCGGC 3 11 14 1.1.1.3.14.11 BCBC-5B-0 14131251 P224050 Pir ProximalPromoter P224050 ProximalPromoter Unique Tile chrX:159612544-159613585 (+) NM_027153 + 44 159613541 69656 Pir 2310042L19Rik pirin MGI:1916906 Mm.293463 X X F5 PIR 8544 NM_009759 - 10246 159602298 12169 Bmx 0 GGCTCTCTAGGGAGGTAAGACCA TTTACCCTGGGTTTGGATTCTCT 3 11 15 1.1.1.3.15.11 BCBC-5B-0 14131270 P224800 Wbp7 ProximalPromoter P224800 ProximalPromoter Unique Tile chr7:30297752-30298560 (-) NM_029274 - 275 30297477 75410 Wbp7 2610014H22Rik|mKIAA0304 WW domain binding protein 7 MGI:109565 Mm.168688 7 7 B1 MLL4 9757 NM_021397 - 2103 30300663 58206 Zbtb32 0 ACAAGCGAGTTGCAGAAGCCT TCTTCTGGGGAATGTAGTCCAGT 3 11 16 1.1.1.3.16.11 BCBC-5B-0 14131289 P227564 Pdx1 P227564 Pdx1 Unique Tile chr3:53272293-53273248 (+) 0 CCTCTCCAAGCTCTCTGTATTGC CCTGAACAGAATTACTGGGTTGC 3 11 17 1.1.1.3.17.11 BCBC-5B-0 14131308 P227060 Syt7 Pdx1 P227060 Pdx1 Unique Tile chr19:10430559-10431486 (+) NM_173067;NM_018801;NM_173068; + 25041 10456527 54525 Syt7 - synaptotagmin VII MGI:1859545 Mm.182654 19 19 B SYT7 9066 0 GAATGGTGGTGACAATACACCAA CCTGGCTCTTCACCTCTTTGTAG 3 11 18 1.1.1.3.18.11 BCBC-5B-0 14131327 P227234 Cd24a Pdx1 P227234 Pdx1 Unique Tile chr10:43307126-43308061 (+) NM_009846 + 39523 43267603 12484 Cd24a HSA|Ly-52 CD24a antigen MGI:88323 Mm.29742 10 10 B2|10 26.0 cM CD24 934 0 CTACCTATGACTTCCCTTCTGCG TTGGCATAAACTGTGCAGAGAAA 3 11 19 1.1.1.3.19.11 BCBC-5B-0 14131346 P003171 Blank P003171 Buffer Control Negative Blank 3 11 20 1.1.1.3.20.11 BCBC-5B-0 14130986 P211106 PufferfishHuman P211106 PufferfishHuman Unique Tile chr2:34082210-34083224 (+) 0 GAAAACCTGCAACAGCCATATTT ACAAGGGCAAGTGAATAGCCATA 3 12 1 1.1.1.3.1.12 BCBC-5B-0 14131005 P212228 miRNA P212228 miRNA Unique Tile chr18:65371045-65371994 (+) mmu-mir-122a 0 AATTGTCCACAGCCCCTAGAAAT TCACAGTGCTTTGGAAATGAGAA 3 12 2 1.1.1.3.2.12 BCBC-5B-0 14131024 P212978 Dpep1 Enhancer P212978 Enhancer Unique Tile chr8:126072638-126073659 (+) NM_007876 + 184 126072454 13479 Dpep1 AI327012|MBD dipeptidase 1 (renal) MGI:94917 Mm.20388 8 8 E1|8 67.0 cM DPEP1 1800 NM_013614 - 19298 126053340 18263 Odc1 0 AACTTACGGATAGACCGCAAACA CCACATCTGAACGTGACTCTCTG 3 12 3 1.1.1.3.3.12 BCBC-5B-0 14131043 P214100 Htf9c Enhancer P214100 Enhancer Unique Tile chr16:18164335-18165430 (-) NM_008307 + 1771 18162564 15547 Htf9c - HpaII tiny fragments locus 9c MGI:96270 Mm.271798 16 16 A3|16 10.9 cM HTF9C 27037 NM_011239 - 2059 18162276 19385 Ranbp1 0 GTGATTGATCCTGTTCTGGGTTC TGCTGGGTAATCAAGGTTGAGAT 3 12 4 1.1.1.3.4.12 BCBC-5B-0 14131062 P214940 H2-Ke2 Enhancer P214940 Enhancer Unique Tile chr17:33546126-33547199 (+) NM_010385 - 3560 33550759 14976 H2-Ke2 H-2Ke2|Ke-2 H2-K region expressed gene 2 MGI:95908 Mm.2948 17 17 B1|17 18.41 cM PFDN6 10471 NM_020603 + 3977 33551176 57315 Wdr46 2 CCTCTGACCACATCAGGACTTTT TAGGATGTACAGGGCTACCCAAA 3 12 5 1.1.1.3.5.12 BCBC-5B-0 14131081 P215690 6530403A03Rik Enhancer P215690 Enhancer Unique Tile chr13:38210317-38211276 (+) NM_026382 + 1128 38212404 67797 6530403A03Rik 1110050F08Rik|C6orf151 RIKEN cDNA 6530403A03 gene MGI:1915047 Mm.250783 13 13 A5 C6orf151 154007 1 TTCTTCCACTGGTGGTAAACGAT GAAATCACTAGGTGGTCATTGGC 3 12 6 1.1.1.3.6.12 BCBC-5B-0 14131100 P216812 1700029I01Rik Enhancer P216812 Enhancer Inter Repeats Tile chr4:145012001-145012970 (+) NM_027285 + 35259 145048229 70005 1700029I01Rik - RIKEN cDNA 1700029I01 gene MGI:1917255 Mm.327224; Mm.392861; Mm.327224; Mm.392861; Mm.327224; Mm.392861; Mm.327224; Mm.392861; Mm.327224; Mm.392861; Mm.327224; Mm.392861 4 4 E1 0 CATCGCTGACAGGAGAACGAG CCTTTGGAAGATCAGTCAGTGCT 3 12 7 1.1.1.3.7.12 BCBC-5B-0 14131119 P217562 Dusp4 Enhancer P217562 Enhancer Unique Tile chr8:36272767-36273666 (+) NM_176933 + 2460 36276126 319520 Dusp4 2700078F24Rik|AI844617|BB104621|E130306H24Rik dual specificity phosphatase 4 MGI:2442191 Mm.170276; Mm.392187; Mm.170276; Mm.392187; Mm.170276; Mm.392187; Mm.170276; Mm.392187; Mm.170276; Mm.392187; Mm.170276; Mm.392187 8 8 A4 DUSP4 1846 0 ACCGTCTTCTCTGGGGATTCTAC GTGCTCACATGGCCTGTAAATAA 3 12 8 1.1.1.3.8.12 BCBC-5B-0 14131138 P218320 Bmp5 ProximalPromoter P218320 ProximalPromoter Unique Tile chr9:75561170-75562264 (+) NM_007555 + 991 75561273 12160 Bmp5 AU023399|se bone morphogenetic protein 5 MGI:88181 Mm.118034 9 9 D|9 42.0 cM BMP5 653 0 AAAATGGAGGCTTTTCTGGTAGC ATGGCATTGTAGAGATCCAGCAT 3 12 9 1.1.1.3.9.12 BCBC-5B-0 14131157 P219442 Tbce ProximalPromoter P219442 ProximalPromoter Unique Tile chr13:13831734-13832700 (-) NM_178337 - 8 13831726 70430 Tbce 2610206D02Rik|C530005D02Rik|pmn tubulin-specific chaperone e MGI:1917680 Mm.260209 13 13 A1|13 7.0 cM TBCE 6905 NM_010282 - 22812 13855512 14593 Ggps1 0 GAAATGTTGTCCTTGAAAAACGC GGAAGTATCTGGAGACCGGAAGT 3 12 10 1.1.1.3.10.12 BCBC-5B-0 14131176 P220192 2900002H16Rik Enhancer P220192 Enhancer Unique Tile chr5:124789473-124790474 (-) NM_021430 - 1428 124791902 75695 2900002H16Rik 6330559I19Rik|FLJ39378 RIKEN cDNA 2900002H16 gene MGI:1922945 Mm.41180 5 5 F FLJ39378 353116 NM_019770 + 10934 124801408 56334 Tmed2 0 GAGGAAACTCCTTTACCCTGGAA GAGGGATTCCATCCTAGCTGTTT 3 12 11 1.1.1.3.11.12 BCBC-5B-0 14131195 P221314 1100001G20Rik ProximalPromoter P221314 ProximalPromoter Unique Tile chr11:83562318-83563281 (+) NM_183249 + 88 83563193 66107 1100001G20Rik - RIKEN cDNA 1100001G20 gene MGI:1913357 Mm.902 11 11 C NM_007969 + 37109 83525209 14038 Expi 0 TTGAGAAAATGCCTTAGAGCTGG CTGTACCTCTAGGCTGAGGGTGA 3 12 12 1.1.1.3.12.12 BCBC-5B-0 14131214 P222154 Cyp2e1 Enhancer P222154 Enhancer Unique Tile chr7:140617747-140618758 (+) NM_021282 + 2596 140615151 13106 Cyp2e1 Cyp2e cytochrome P450, family 2, subfamily e, polypeptide 1 MGI:88607 Mm.21758 7 7 F5|7 68.4 cM CYP2E1 1571 0 TTTTCTGTGTTTTCACAGCTCCA TCTAATCGCATGTGAGATGCCTA 3 12 13 1.1.1.3.13.12 BCBC-5B-0 14131233 P222904 1700067C01Rik ProximalPromoter P222904 ProximalPromoter Inter Repeats Tile chr7:29435879-29436820 (-) NM_029714 - 123 29435756 76718 1700067C01Rik - RIKEN cDNA 1700067C01 gene MGI:1923968 Mm.69030 7 7 B1 NM_023750 + 40543 29477363 74352 Zfp84 0 GTATTCAGGGCGAGCAGTACAGT GCTCTCAGATGTGTGACAGGCTA 3 12 14 1.1.1.3.14.12 BCBC-5B-0 14131252 P224026 BC010801 ProximalPromoter P224026 ProximalPromoter Unique Tile chr9:119958063-119958966 (+) NM_144793 + 130 119959096 208638 BC010801 AV019094|MGC18873 cDNA sequence BC010801 MGI:2384782 Mm.236656 9 9 F4 FLJ20551 54977 NM_007720 + 15559 119942504 12776 Ccr8 0 GAGGCAGAGGTAGGTGGATTTCT GTGATTCTCAGTTGCAGAGCCTT 3 12 15 1.1.1.3.15.12 BCBC-5B-0 14131271 P224776 Spatc1 ProximalPromoter P224776 ProximalPromoter Unique Tile chr15:76094259-76095212 (+) NM_028852 + 131 76095343 74281 Spatc1 1700084J23Rik|MGC144830|speriolin spermatogenesis and centriole associated 1 MGI:1921531 Mm.159156 15 15 E1 SPATC1 375686 NM_023168 + 20188 76074071 66168 Grina 0 CCTCTCCCTGACCTATGGAAAGT CTTACCTCAGCCTGCAATGTCTT 3 12 16 1.1.1.3.16.12 BCBC-5B-0 14131290 P225616 ProximalPromoter P225616 ProximalPromoter No Hits Tile 0 taattctgaagctgggtcaggag acaatgctgttgcctctgtcata 3 12 17 1.1.1.3.17.12 BCBC-5B-0 14131309 P227036 Hmgb1 Pdx1 P227036 Pdx1 Unique Tile chr5:149373362-149374288 (+) NM_010439 - 9976 149363386 15289 Hmgb1 Hmg1|MGC103168|MGC103169|MGC117896|MGC117897 high mobility group box 1 MGI:96113 Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345; Mm.207047; Mm.313345 5 5 G3|5 83.0 cM HMGB1 3146 2 AGAGTTACAGATGGGTGTGAGCC CAGTTAGCCTAGCCAGCCCTAGT 3 12 18 1.1.1.3.18.12 BCBC-5B-0 14131328 P227210 Ldha Pdx1 P227210 Pdx1 Unique Tile chr7:46714105-46715038 (+) NM_010699 + 176 46713929 16828 Ldha LDH-A|Ldh-1|Ldh1 lactate dehydrogenase A MGI:96759 Mm.29324; Mm.379599; Mm.29324; Mm.379599; Mm.29324; Mm.379599; Mm.29324; Mm.379599; Mm.29324; Mm.379599; Mm.29324; Mm.379599; Mm.29324; Mm.379599; Mm.29324; Mm.379599; Mm.29324; Mm.379599; Mm.29324; Mm.379599; Mm.29324; Mm.379599; Mm.29324; Mm.379599; Mm.29324; Mm.379599; Mm.29324; Mm.379599; Mm.29324; Mm.379599; Mm.29324; Mm.379599; Mm.29324; Mm.379599; Mm.29324; Mm.379599; Mm.29324; Mm.379599; Mm.29324; Mm.379599; Mm.29324; Mm.379599 7 7 B3|7 23.5 cM LDHA 3939 NM_013580 + 14262 46729300 16833 Ldhc 0 TAAAGAGGACTAAGGGGTGGCTG ATATAGGTCTAGCGACTGCTGGC 3 12 19 1.1.1.3.19.12 BCBC-5B-0 14131347 P003075 Blank P003075 Buffer Control Negative Blank 3 12 20 1.1.1.3.20.12 BCBC-5B-0 14130987 P211082 PufferfishHuman P211082 PufferfishHuman Unique Tile chr2:33610567-33611651 (-) 1 ATAACAGTTTCTGCCGTTTTCCA GGACACAGTGATGAACAATGAGC 3 13 1 1.1.1.3.1.13 BCBC-5B-0 14131006 P212204 miRNA P212204 miRNA Unique Tile chr2:74523722-74524650 (+) mmu-mir-10b 0 ACCTGAAACTGGAAAAGGAGGTC AATAATGGCTGGACAGCAGAGAG 3 13 2 1.1.1.3.2.13 BCBC-5B-0 14131025 P212954 Dbi Enhancer P212954 Enhancer Unique Tile chr1:121947454-121948434 (-) NM_001037999;NM_007830; - 31 121948465 13167 Dbi ACBD1|Acbp diazepam binding inhibitor MGI:94865 Mm.2785 1 1 E2 DBI 1622 NM_028439 + 306 121948740 73103 3110009E18Rik 0 TCTATTTCCTCAGATATCCCGCA GCCCACAGTAGCTTGTTTGAAGT 3 13 3 1.1.1.3.3.13 BCBC-5B-0 14131044 P213794 Fusip1 Enhancer P213794 Enhancer Unique Tile chr4:135130513-135131536 (+) NM_010178 + 2266 135128247 14105 Fusip1 FUSIP2|NSSR1|NSSR2|Nssr|SRrp40|TASR|TASR1|TASR2 FUS interacting protein (serine-arginine rich) 1 MGI:1333805 Mm.10229 4 4 D3 FUSIP1 10772 NM_026383 - 14359 135145895 52830 Pnrc2 0 TGAGGGGTGTTGAAGTTTGAAAT ACAAGAGCCTCTGATGAACAGGT 3 13 4 1.1.1.3.4.13 BCBC-5B-0 14131063 P214916 Sap30bp Enhancer P214916 Enhancer Unique Tile chr11:115753489-115754446 (+) NM_020483 + 3741 115749748 57230 Sap30bp 2700016D05Rik|Hcngp SAP30 binding protein MGI:1927479 Mm.267810; Mm.393253; Mm.267810; Mm.393253; Mm.267810; Mm.393253; Mm.267810; Mm.393253; Mm.267810; Mm.393253; Mm.267810; Mm.393253; Mm.267810; Mm.393253; Mm.267810; Mm.393253; Mm.267810; Mm.393253; Mm.267810; Mm.393253 11 - SAP30BP 29115 NM_130454 - 4183 115749306 170472 Recql5 0 TCCCATCTGCTTCTTAGCTTTTG ACCTATGAGAAGGAAGGCTGCTT 3 13 5 1.1.1.3.5.13 BCBC-5B-0 14131082 P215666 Dctn4 Enhancer P215666 Enhancer Unique Tile chr18:60651895-60652842 (+) NM_026302 + 306 60651589 67665 Dctn4 1110001K06Rik|4930547K17Rik|p62 dynactin 4 MGI:1914915 Mm.272801 18 18 D2 DCTN4 51164 NM_134133 - 25001 60626894 106878 2010002N04Rik 0 TTGCTTGTGGATAGTCACTTGGA ACAGTACAGCTTTTTCCCCCTTC 3 13 6 1.1.1.3.6.13 BCBC-5B-0 14131101 P216788 Ccdc28a Enhancer P216788 Enhancer Unique Tile chr10:17923274-17924296 (-) NM_144820 - 98 17924394 215814 Ccdc28a 1700009P13Rik|AI480677|MGC19351 coiled-coil domain containing 28A MGI:2443508 Mm.296565 10 10 A3 CCDC28A 25901 2 AAGGGTAACCACAGCCTTTTCTC TTAAACACACCAGAAGAGGGCAT 3 13 7 1.1.1.3.7.13 BCBC-5B-0 14131120 P217628 Fhod1 Enhancer P217628 Enhancer Unique Tile chr8:108238218-108239135 (-) NM_177699 - 1136 108237082 234686 Fhod1 BC017144|FHOS|FHOS1 formin homology 2 domain containing 1 MGI:2679008 Mm.87724 8 8 D3 FHOD1 29109 NM_025486 + 22677 108215541 66320 Hspc171 1 TCCAGGAGAATATCATCCCTTCA ACACTCGAAAGAGTGGGTTTCAG 3 13 8 1.1.1.3.8.13 BCBC-5B-0 14131139 P218296 Plp1 Enhancer P218296 Enhancer Unique Tile chrX:132172713-132173683 (+) NM_011123 + 3514 132169199 18823 Plp1 DM20|Plp|jimpy|jp|msd|rsh proteolipid protein (myelin) 1 MGI:97623 Mm.1268 X X F1-F2|X 56.0 cM PLP1 5354 NM_176971 - 41193 132214876 319642 Rab9b 0 GGACAAGGTTGAGACAATGTTCC CCTGATCCTGATGCTGTCTCTTT 3 13 9 1.1.1.3.9.13 BCBC-5B-0 14131158 P219418 Defb10 ProximalPromoter P219418 ProximalPromoter Unique Tile chr8:23323488-23324484 (+) NM_139225 + 39 23324445 246085 Defb10 Defb7 defensin beta 10 MGI:2179205 Mm.220170 8 8 A2 NM_010030 + 18006 23305482 13215 Defb2 0 TTGCCCAGAAGTGATAGAAGGAG GAGAGTCCTCATGGCTGGTAGAA 3 13 10 1.1.1.3.10.13 BCBC-5B-0 14131177 P220168 ProximalPromoter P220168 ProximalPromoter No Hits Tile 0 cgattcaagtagcatcgacacag tcagagcagggattagaaaccag 3 13 11 1.1.1.3.11.13 BCBC-5B-0 14131196 P221008 Olfr799 ProximalPromoter P221008 ProximalPromoter Unique Tile chr10:129049188-129050136 (+) NM_146927 + 58 129050078 258929 Olfr799 MOR114-2 olfactory receptor 799 MGI:3030633 Mm.377752 10 - NM_146548 + 12620 129062756 258541 Olfr800 0 AGGTGATTTGGTTTCACACTTCC GCCTAATGTCATCTGTCAGACCC 3 13 12 1.1.1.3.12.13 BCBC-5B-0 14131215 P222130 Edn2 Enhancer P222130 Enhancer Unique Tile chr4:119661467-119662373 (+) NM_007902 + 2400 119659067 13615 Edn2 VIC endothelin 2 MGI:95284 Mm.284855 4 4 D2.2 EDN2 1907 0 TTTCGGGTTCTAACCTAAGGCTC AACCACGCAGTCACTCTTACCTC 3 13 13 1.1.1.3.13.13 BCBC-5B-0 14131234 P222880 2310040C09Rik ProximalPromoter P222880 ProximalPromoter Unique Tile chr11:61499581-61500480 (+) NM_178618 + 175 61500655 69640 2310040C09Rik AI506990 RIKEN cDNA 2310040C09 gene MGI:1916890 Mm.33622 11 11 B2 NM_027817 + 30066 61469515 71520 Grap 0 GGAGGCCTTACTGGAAAATGAAC GTTCTCGGAATCCTGGGAATAAG 3 13 14 1.1.1.3.14.13 BCBC-5B-0 14131253 P224002 BC094916 ProximalPromoter P224002 ProximalPromoter Unique Tile chr1:175372626-175373655 (-) NM_001024721 - 100 175372526 545384 BC094916 - cDNA sequence BC094916 MGI:3584522 Mm.371698 1 1 H3 0 TCCATCCACCATGAATAAAGGAC ATGTCTCAGCTGGGTGTTGTTTT 3 13 15 1.1.1.3.15.13 BCBC-5B-0 14131272 P224842 Naaladl1 ProximalPromoter P224842 ProximalPromoter Unique Tile chr19:6104724-6105633 (+) NM_001009546 + 164 6105797 381204 Naaladl1 Gm964|Naaladasel N-acetylated alpha-linked acidic dipeptidase-like 1 MGI:2685810 Mm.359041 19 19 A NAALADL1 10004 NM_133678 - 12953 6118586 66406 Sac3d1 0 CAGAGCTGAGTGAGTAAGGGAGG TCTCTGAAGGAACCAGGAAGATG 3 13 16 1.1.1.3.16.13 BCBC-5B-0 14131291 P225592 Gpm6a ProximalPromoter P225592 ProximalPromoter Unique Tile chr8:56553653-56554595 (+) NM_153581 + 18570 56536025 234267 Gpm6a Gpm6|M6A|MGC38999 glycoprotein m6a MGI:107671 Mm.241700 8 8 B3.2 GPM6A 2823 0 TTTGCTTGCTGTGTGTTTTATGC CATGGGACAAAAAGAGAATACGC 3 13 17 1.1.1.3.17.13 BCBC-5B-0 14131310 P227012 Hint3 Pdx1 P227012 Pdx1 Unique Tile chr10:30307669-30308595 (+) NM_025798 - 113 30307782 66847 Hint3 0610010I17Rik|HINT-4|HINT4 histidine triad nucleotide binding protein 3 MGI:1914097 Mm.46218 10 10 A4 HINT3 135114 NM_028604 - 17561 30290108 73681 2410075D05Rik 0 AGAACACGCAGTTGCTGTCATAG TCAACCTTGGGAGTTTTCACAAT 3 13 18 1.1.1.3.18.13 BCBC-5B-0 14131329 P227186 Fnbp1 Pdx1 P227186 Pdx1 Unique Tile chr2:30918023-30918955 (+) NM_001038700;NM_019406; - 44993 30963948 14269 Fnbp1 1110057E06Rik|2210010H06Rik|FBP1|Fbp17 formin binding protein 1 MGI:109606 Mm.52297 2 2 B FNBP1 23048 0 CAAGATGCATTACCGATTTCCTC GTCTATGTCCATGAACCTGAGGG 3 13 19 1.1.1.3.19.13 BCBC-5B-0 14131348 P002410 Stratagene PCR 8 P002410 Spike Control Negative Stratagene PCR 8 3 13 20 1.1.1.3.20.13 BCBC-5B-0 14130988 P211058 PufferfishHuman P211058 PufferfishHuman Unique Tile chr2:169583496-169584402 (-) 1 AGGGTGTGTGTGTGTCTGTCTGT GATGAGCTCACTTGAAACCCAAC 3 14 1 1.1.1.3.1.14 BCBC-5B-0 14131007 P212180 miRNA P212180 miRNA Unique Tile chr9:106038787-106039767 (-) mmu-let-7g 0 GCCCAAAGGTGAACATCAGATAG ATGGAAGAGAGGGAGAGGTTTTG 3 14 2 1.1.1.3.2.14 BCBC-5B-0 14131026 P213020 Fbn1 Enhancer P213020 Enhancer Unique Tile chr2:125196723-125197789 (-) NM_007993 - 37 125197826 14118 Fbn1 AI536462|B430209H23|Fib-1|Tsk fibrillin 1 MGI:95489 Mm.271644 2 2 F|2 71.0 cM FBN1 2200 0 CGCTAGTCCAGTGGGTCTCAT GTTGATGACCGAGTAACTTTGGC 3 14 3 1.1.1.3.3.14 BCBC-5B-0 14131045 P213770 Rhbdf1 Enhancer P213770 Enhancer Unique Tile chr11:32121165-32122194 (-) NM_010117 - 44 32122238 13650 Rhbdf1 C16ORF8|Dist1|Egfr-rs|KIAA4242|mKIAA4242 rhomboid family 1 (Drosophila) MGI:104328 Mm.11545 11 11 A4|11 16.0 cM RHBDF1 64285 NM_010822 + 4316 32126510 268395 Mpg 0 CAGACCCTTCTGAGGACCCTAC CCTCTGCAACCTCTTGAGAACTG 3 14 4 1.1.1.3.4.14 BCBC-5B-0 14131064 P214892 Garnl1 Enhancer P214892 Enhancer Unique Tile chr12:56737674-56738579 (-) NM_019994;NM_001003719; - 718 56739297 56784 Garnl1 2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Tulip1|mKIAA0884 GTPase activating RANGAP domain-like 1 MGI:1931050 Mm.292180 12 12 C1 GARNL1 253959 NM_001037756 + 15916 56754495 52592 Brms1l 0 TGGAGTTCCTGGTCTGATTGTTT CAGCTCCATCCATCTTCAACTTT 3 14 5 1.1.1.3.5.14 BCBC-5B-0 14131083 P215642 Calcoco1 Enhancer P215642 Enhancer Unique Tile chr15:102547723-102548738 (-) NM_026192 - 1365 102550103 67488 Calcoco1 1810009B06Rik|Cocoa|KIAA1536|mKIAA1536 calcium binding and coiled coil domain 1 MGI:1914738 Mm.71682 15 15 F3 CALCOCO1 57658 NM_026468 - 48642 102499081 67942 Atp5g2 0 GTATAGGGTACTGGAGCTGGGCT CTCTTCCATGCTGTCCTCAAGAT 3 14 6 1.1.1.3.6.14 BCBC-5B-0 14131102 P216482 Sumo2 Enhancer P216482 Enhancer Unique Tile chr11:115351117-115352040 (-) NM_133354 - 192 115352232 170930 Sumo2 SUMO-2|Smt3b|Smt3h2 SMT3 suppressor of mif two 3 homolog 2 (yeast) MGI:2158813 Mm.29923 11 11 E2 SUMO2 6613 NM_008258 - 20657 115330460 15374 Hn1 1 TTTTCCTCTCTCGCTCTCTTCCT CAACTACTAGAGTCGGTTTGGGG 3 14 7 1.1.1.3.7.14 BCBC-5B-0 14131121 P217604 Zmym6 Enhancer P217604 Enhancer Unique Tile chr4:126574750-126575679 (+) NM_177462 + 4007 126579686 100177 Zmym6 9330177P20Rik|AI593204|AI661340|D4Wsu24e|Zfp258 zinc finger, MYM-type 6 MGI:106505 Mm.276096; Mm.392655; Mm.276096; Mm.392655; Mm.276096; Mm.392655; Mm.276096; Mm.392655; Mm.276096; Mm.392655; Mm.276096; Mm.392655; Mm.276096; Mm.392655; Mm.276096; Mm.392655; Mm.276096; Mm.392655; Mm.276096; Mm.392655; Mm.276096; Mm.392655; Mm.276096; Mm.392655; Mm.276096; Mm.392655; Mm.276096; Mm.392655; Mm.276096; Mm.392655; Mm.276096; Mm.392655; Mm.276096; Mm.392655; Mm.276096; Mm.392655; Mm.276096; Mm.392655; Mm.276096; Mm.392655 4 4 D2.2 ZMYM6 9204 NM_026670 - 11314 126563436 68310 Zmym1 2 TATTAACTGCTCTTTCCCCGTGA CACACCAGAAGAGGGAGTCAGAT 3 14 8 1.1.1.3.8.14 BCBC-5B-0 14131140 P218272 Gpx7 Enhancer P218272 Enhancer Unique Tile chr4:107906426-107907498 (-) NM_024198 - 1780 107904646 67305 Gpx7 3110050F08Rik|AI327032|GPX6 glutathione peroxidase 7 MGI:1914555 Mm.20164 4 4 C7 GPX7 2882 NM_175472 + 49859 107957357 230594 Zcchc11 1 ATGACTCAGTGGGTAAGAGCAGC ATGCTATCTTTCTCCACCACCAA 3 14 9 1.1.1.3.9.14 BCBC-5B-0 14131159 P219394 Ptprb ProximalPromoter P219394 ProximalPromoter Unique Tile chr10:115679968-115681287 (+) NM_029928 + 24327 115705614 19263 Ptprb 3230402H02Rik|Ptpz|RPTPB|VE-PTP protein tyrosine phosphatase, receptor type, B MGI:97809 Mm.37213 10 10 D2 PTPRB 5787 1 ACAGCTCAACTCCTGAAAGGATG AGCCCTCTGGAAGATGAAAGACT 3 14 10 1.1.1.3.10.14 BCBC-5B-0 14131178 P220234 1700001D09Rik ProximalPromoter P220234 ProximalPromoter Unique Tile chr3:105998035-105998985 (+) NM_027025 + 23 105998962 69296 1700001D09Rik 4930578J19Rik RIKEN cDNA 1700001D09 gene MGI:1916546 Mm.235024 3 3 F2.2 NM_009631 + 72 105998913 11542 Adora3 0 GCCTACCATCTCTGGTGTGTACC TCCACATGTGCTTGATGAAGTCT 3 14 11 1.1.1.3.11.14 BCBC-5B-0 14131197 P220984 Cnnm4 ProximalPromoter P220984 ProximalPromoter Unique Tile chr1:36415451-36416506 (+) NM_033570 + 24 36416530 94220 Cnnm4 5430430O18Rik|Acdp4 cyclin M4 MGI:2151060 Mm.422638; Mm.45651; Mm.422638; Mm.45651; Mm.422638; Mm.45651; Mm.422638; Mm.45651; Mm.422638; Mm.45651; Mm.422638; Mm.45651 1 1 B|1 20.2 cM CNNM4 26504 NM_001013374 - 25666 36389785 214895 Lman2l 1 CCCGTATGGCTTGTCTTGTTTAC AGGAGATCAGGTTGCTGGAGATA 3 14 12 1.1.1.3.12.14 BCBC-5B-0 14131216 P222106 Fgr Enhancer P222106 Enhancer Unique Tile chr4:132246541-132247459 (+) NM_010208 + 239 132246302 14191 Fgr - Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog MGI:95527 Mm.271665 4 4 D2.3|4 64.6 cM FGR 2268 NM_146155 + 36122 132283581 230793 Ahdc1 0 TAAAAACCTAGGAGAAGGCCGAG TCCAATGAGAAAAGCAAAAGTCC 3 14 13 1.1.1.3.13.14 BCBC-5B-0 14131235 P222856 Il3ra ProximalPromoter P222856 ProximalPromoter Unique Tile chr14:13140532-13141270 (+) NM_008369 + 1509 13139761 16188 Il3ra CD123|CDw123|SUT-1 interleukin 3 receptor, alpha chain MGI:96553 Mm.425857 14 14 A1|14 1.5 cM IL3RA 3563 NM_147027 + 19153 13121379 18330 Olfr31 0 GTGTCTCACAAGACTCAGGCCC GGTCCCAGCTCAGTGTGTAGTG 3 14 14 1.1.1.3.14.14 BCBC-5B-0 14131254 P223696 Mrpl41 ProximalPromoter P223696 ProximalPromoter Unique Tile chr2:24797067-24798119 (+) NM_001031808 - 21 24797046 107733 Mrpl41 MRP-L27|Rpml27 mitochondrial ribosomal protein L41 MGI:1333816 Mm.23010 2 2 A3 MRPL41 64975 NM_146251 + 23 24798096 241274 Pnpla7 0 GTCAGACACTCCGTAGCAAGAGC AGAAGCGTCTGCTTTCTCTGTGT 3 14 15 1.1.1.3.15.14 BCBC-5B-0 14131273 P224818 Sctr ProximalPromoter P224818 ProximalPromoter Unique Tile chr1:121833448-121834489 (+) NM_001012322 + 36 121834525 319229 Sctr 6530402O03Rik|MGC102218 secretin receptor MGI:2441720 Mm.189223 1 1 E2.3 SCTR 6344 0 TGGCTCAGTCTGTAAAGTGCTTG AGAGAGGAGGAGGGACCCTAGAC 3 14 16 1.1.1.3.16.14 BCBC-5B-0 14131292 P225568 A530094I17Rik ProximalPromoter P225568 ProximalPromoter Unique Tile chr13:67999562-68000530 (-) NM_001007575 - 43 67999605 238693 A530094I17Rik Rslcan5 RIKEN cDNA A530094I17 gene MGI:3040705 Mm.315879 13 13 B3 NM_133228 - 24706 68025236 170763 Zfp87 0 CATTAGGTGCCCTGTGGTCTATC TTTGGAGAAACAGCACACTTTCA 3 14 17 1.1.1.3.17.14 BCBC-5B-0 14131311 P226988 Pdx1 P226988 Pdx1 Unique Tile chr7:61698556-61699480 (+) 0 AGCAGCTCAGTGAGACTCTGCAT TTTGGATTCTGTTAGTTGGGTCA 3 14 18 1.1.1.3.18.14 BCBC-5B-0 14131330 P227252 Pdx1 P227252 Pdx1 Unique Tile chr7:116838958-116839893 (+) 0 AGAGGGGCATGAGGAAAGATTAC TTCCTTTCAAGTAGCTTGCCTTG 3 14 19 1.1.1.3.19.14 BCBC-5B-0 14131349 P002386 Stratagene PCR 6 P002386 Spike Control Negative Stratagene PCR 6 3 14 20 1.1.1.3.20.14 BCBC-5B-0 14130989 P211034 PufferfishHuman P211034 PufferfishHuman No Hits Tile 0 tgttattttcgtggttgtggatg tgaatgagttccttgctttttcc 3 15 1 1.1.1.3.1.15 BCBC-5B-0 14131008 P211874 PufferfishHuman P211874 PufferfishHuman End Repeat Tile chr13:84532400-84533304 (+) 1 GTGTGTGTGTGTGTGTGTGTGTG AGCTTTGTTCCTGGTAGGGGTAG 3 15 2 1.1.1.3.2.15 BCBC-5B-0 14131027 P212996 Eif4ebp1 Enhancer P212996 Enhancer Unique Tile chr8:28726696-28727609 (+) NM_007918 + 359 28726337 13685 Eif4ebp1 AA959816|PHAS-I eukaryotic translation initiation factor 4E binding protein 1 MGI:103267 Mm.6700 8 8 A4-B1|8 8.0 cM EIF4EBP1 1978 NM_013462 - 31172 28695524 11556 Adrb3 0 GCCTGCATTATTAGCCTTTTCCT TGCTTGCTACTTCTTGCTGAGTG 3 15 3 1.1.1.3.3.15 BCBC-5B-0 14131046 P213746 Cst3 Enhancer P213746 Enhancer Unique Tile chr2:148570077-148571161 (-) NM_009976 - 3168 148566909 13010 Cst3 CysC cystatin C MGI:102519 Mm.4263 2 2 G3|2 84.0 cM CST3 1471 NM_029960 - 27702 148542375 77705 9230104L09Rik 0 GGAGGTCACAGCCTGATAGAGAA GACAGCTTCCAGTTAGGTGCAGT 3 15 4 1.1.1.3.4.15 BCBC-5B-0 14131065 P214868 Crtap Enhancer P214868 Enhancer Unique Tile chr9:114237871-114238858 (-) NM_019922 - 489 114239347 56693 Crtap 5730529N23Rik|CASP cartilage associated protein MGI:1891221 Mm.20904 9 9 F3-F4 CRTAP 10491 NM_009752 + 10958 114249816 12091 Glb1 1 ACAAGTTTCTGCAGTTCGCCTAC ATATTTGCTACCTCAGCACAGGC 3 15 5 1.1.1.3.5.15 BCBC-5B-0 14131084 P215708 1810055E12Rik Enhancer P215708 Enhancer Unique Tile chr19:60868349-60869380 (+) NM_026437 + 2073 60866276 67894 1810055E12Rik - RIKEN cDNA 1810055E12 gene MGI:1915144 Mm.26148 19 19 D3 FAM45A 404636 NM_010123 - 23043 60845306 13669 Eif3s10 1 TTTAGTCCCCAGCAATGAGAAAA TTGTTTTCATCAGTTAGGCAGCA 3 15 6 1.1.1.3.6.15 BCBC-5B-0 14131103 P216458 Mfn2 Enhancer P216458 Enhancer Unique Tile chr4:146747475-146748506 (-) NM_133201 - 2 146748504 170731 Mfn2 D630023P19Rik|Fzo mitofusin 2 MGI:2442230 Mm.154312 4 4 E2 MFN2 9927 NM_011122 - 20832 146769338 18822 Plod1 0 CTAGTGACGTGTTGGGTGTGATG GAGACAAACACATTAGCCGTGTG 3 15 7 1.1.1.3.7.15 BCBC-5B-0 14131122 P217580 Phf8 Enhancer P217580 Enhancer Unique Tile chrX:146861991-146862901 (+) NM_177201 + 95 146861896 320595 Phf8 9830141C09Rik|mKIAA1111 PHD finger protein 8 MGI:2444341 Mm.17156 X X F3 PHF8 23133 0 GAAGAGAGCTCTGTAGCGTTTGG ACTTGGAAAGAACAGCAAGAACG 3 15 8 1.1.1.3.8.15 BCBC-5B-0 14131141 P218248 Enhancer P218248 Enhancer No Hits Tile 0 gtgagtacaatggcgtgttggta tgaccaaagttgtgtgtgtgttg 3 15 9 1.1.1.3.9.15 BCBC-5B-0 14131160 P219088 2010110K16Rik Enhancer P219088 Enhancer Unique Tile chr9:118002353-118003303 (-) NM_026442 - 3575 117998778 67899 2010110K16Rik 2010312P05Rik|AI596001 RIKEN cDNA 2010110K16 gene MGI:1915149 Mm.396353; Mm.9953; Mm.396353; Mm.9953; Mm.396353; Mm.9953; Mm.396353; Mm.9953; Mm.396353; Mm.9953; Mm.396353; Mm.9953; Mm.396353; Mm.9953; Mm.396353; Mm.9953; Mm.396353; Mm.9953 9 9 F3 MGC61571 152100 2 CAGTTACAGGCAGTTGTGAGCTG TCTGAGTAGTAATTGGGCTTGGC 3 15 10 1.1.1.3.10.15 BCBC-5B-0 14131179 P220210 S100a4 ProximalPromoter P220210 ProximalPromoter Unique Tile chr3:90688775-90689751 (+) NM_011311 + 55 90689696 20198 S100a4 18A2|42a|Capl|FSp1|Mts1|PeL98|metastasin|pk9a S100 calcium binding protein A4 MGI:1330282 Mm.3925 3 3 F1-F2|3 43.6 cM S100A4 6275 NM_011310 + 2631 90686144 20197 S100a3 0 ATTTCAGGAGGGTAGGGGTAACA CAGACCAACACAACTCACCAGAC 3 15 11 1.1.1.3.11.15 BCBC-5B-0 14131198 P220960 Nalp9b ProximalPromoter P220960 ProximalPromoter Unique Tile chr7:19165653-19166571 (+) NM_194058 + 27 19166544 243874 Nalp9b Nalp-delta NACHT, LRR and PYD containing protein 9b MGI:2675377 Mm.277114 7 7 A3 NALP9 338321 NM_027839 + 41701 19123952 71601 Ceacam20 0 CATCAGTGGGGAATATTGGATGT AACTGCACACATGCTCAAAAATG 3 15 12 1.1.1.3.12.15 BCBC-5B-0 14131217 P222082 Derl2 Enhancer P222082 Enhancer End Repeat Tile chr11:70831277-70832198 (+) NM_033562 - 3239 70835437 116891 Derl2 BC005682|CGI-101|Derlin-2|F-lana|Flana|MGC11613 Der1-like domain family, member 2 MGI:2151483 Mm.28131 11 11 B4|11 42.0 cM DERL2 51009 NM_025993 + 3607 70835805 67139 Mis12 1 TGGGAAGCCTCACATTAGAAACT CACACACACACACACACACACAC 3 15 13 1.1.1.3.13.15 BCBC-5B-0 14131236 P222922 Sprr2j Enhancer P222922 Enhancer Unique Tile chr3:92507052-92508034 (+) NM_011476 + 3563 92503489 20764 Sprr2j - small proline-rich protein 2J MGI:1330345 Mm.57084 3 3 F1|3 45.2 cM NM_011477 + 9950 92517984 20765 Sprr2k 0 ACGGACAAGAGGGGAAGCTATAC TCATAGCCTAGCTGGAAAGCAAC 3 15 14 1.1.1.3.14.15 BCBC-5B-0 14131255 P223672 Fgfr1op ProximalPromoter P223672 ProximalPromoter Unique Tile chr17:8006175-8007138 (+) NM_201230 + 3425 8003713 75296 Fgfr1op 4930553O10Rik|FOP|MGC117820|MGC90966 Fgfr1 oncogene partner MGI:1922546 Mm.227250 17 17 A1 FGFR1OP 11116 NM_029204;NM_026611; - 19904 7986271 68195 Rnaset2 0 TCCCCAGCATCTCAGTTAGTTTC AGTTCTCTGTTTTCCCATAGCCC 3 15 15 1.1.1.3.15.15 BCBC-5B-0 14131274 P224794 AI595406 ProximalPromoter P224794 ProximalPromoter Unique Tile chr11:35642154-35643079 (-) NM_001004147 - 157 35641997 237730 AI595406 MGC62475 expressed sequence AI595406 MGI:3034689 Mm.189222 11 11 A4 LOC345630 345630 NM_145962 + 28849 35613305 211347 Pank3 0 CCCCATCTGAGAGGACTGACTAA TATTCTCTGCTTTCCCAGGGACT 3 15 16 1.1.1.3.16.15 BCBC-5B-0 14131293 P225544 Ttll4 ProximalPromoter P225544 ProximalPromoter Unique Tile chr1:74594030-74594931 (+) NM_001014974 + 29 74594960 67534 Ttll4 4632407P03Rik|AI451681|mKIAA0173 tubulin tyrosine ligase-like family, member 4 MGI:1914784 Mm.260714 1 1 C3 TTLL4 9654 1 TCCAAATCTCATCAGGAGACAAA GATCTAAGGCCAGAAAGGAATGG 3 15 17 1.1.1.3.17.15 BCBC-5B-0 14131312 P226490 Pdx1 P226490 Pdx1 Unique Tile chr1:62939037-62939946 (+) 0 GGGGACCGAGAAAGAATCATTAC TGGAGCTTCCTGCTTTACCTAGA 3 15 18 1.1.1.3.18.15 BCBC-5B-0 14131331 P227228 Pdx1 P227228 Pdx1 Unique Tile chr8:111851968-111852902 (+) 0 GGGAGGCTGACTTGTTTTAAATG GATTAAAGACGTGCACCACCACT 3 15 19 1.1.1.3.19.15 BCBC-5B-0 14131350 P002362 Stratagene PCR 4 P002362 Spike Control Negative Stratagene PCR 4 3 15 20 1.1.1.3.20.15 BCBC-5B-0 14130990 P211100 PufferfishHuman P211100 PufferfishHuman Unique Tile chr2:33929275-33930334 (+) 0 GAATGCCTCTCCTCTCTCCTCTC AACAAAGCAGCCCGTTACACTTA 3 16 1 1.1.1.3.1.16 BCBC-5B-0 14131009 P211850 Nkx2-2 PufferfishHuman P211850 PufferfishHuman Unique Tile chr2:146877580-146878529 (+) NM_010919 - 220 146877800 18088 Nkx2-2 Nkx-2.2|Nkx2.2|tinman NK2 transcription factor related, locus 2 (Drosophila) MGI:97347 Mm.330639 2 2 H|2 82.0 cM NKX2-2 4821 1 GGGATGGGTTTTAATTATTGGGA AGGCTTACAGAAGTTGGGCTCTT 3 16 2 1.1.1.3.2.16 BCBC-5B-0 14131028 P212972 Dll3 Enhancer P212972 Enhancer Unique Tile chr7:28014432-28015382 (-) NM_007866 - 3888 28010544 13389 Dll3 pu|pudgy delta-like 3 (Drosophila) MGI:1096877 Mm.12896; Mm.212777; Mm.12896; Mm.212777; Mm.12896; Mm.212777; Mm.12896; Mm.212777; Mm.12896; Mm.212777 7 7 A3|7 10.0 cM DLL3 10683 NM_025616 - 5399 28020781 66525 Timm50 1 TCAGCACTGACAACATTCAGGAT AAACCCAGGTTTTCAGTTTCAGG 3 16 3 1.1.1.3.3.16 BCBC-5B-0 14131047 P213722 Mapkapk3 Enhancer P213722 Enhancer Unique Tile chr9:107150481-107151427 (+) NM_178907 - 2503 107147978 102626 Mapkapk3 3PK|AI874665|MAPKAP3|MapkKapk3 mitogen-activated protein kinase-activated protein kinase 3 MGI:2143163 Mm.222612 9 9 F1 MAPKAPK3 7867 NM_009895 + 3362 107154789 12700 Cish 0 TATTTTCCTTCTGCCTCTTTCCC ATAATGTCTGGAGCCGTTGATGT 3 16 4 1.1.1.3.4.16 BCBC-5B-0 14131066 P214562 Vezf1 Enhancer P214562 Enhancer Unique Tile chr11:87884725-87885683 (+) NM_016686 + 252 87884473 22344 Vezf1 AI848691|AW046909|db1 vascular endothelial zinc finger 1 MGI:1313291 Mm.46628 11 11 C ZNF161 7716 NM_173374 + 20752 87863973 110809 Sfrs1 1 GCCTTAATCCCCCTTTGTTTTTC ATTTGCAAACAGAAAGGAAGCAG 3 16 5 1.1.1.3.5.16 BCBC-5B-0 14131085 P215684 Jagn1 Enhancer P215684 Enhancer Unique Tile chr6:113409317-113410402 (+) NM_026365 + 906 113408411 67767 Jagn1 5830427H10Rik|AW146438 jagunal homolog 1 (Drosophila) MGI:1915017 Mm.2053 6 6 E3 JAGN1 84522 NM_178373 - 7785 113401532 14311 Cidec 0 TGGTGAGGAATTAGCAAGTCGTT TTTGGCTGGGATACATAAGCTGT 3 16 6 1.1.1.3.6.16 BCBC-5B-0 14131104 P216434 Higd1b Enhancer P216434 Enhancer Unique Tile chr11:102647468-102648464 (+) NM_080846 + 3921 102652385 75689 Higd1b 2310056K19Rik HIG1 domain family, member 1B MGI:1922939 Mm.44408 11 11 D HIGD1B 51751 NM_008122 - 11692 102635776 14615 Gja7 0 TTTTAGTCTGGGACCCATTTCCT TAGCTTGTTAGGGTGTCAGGAGC 3 16 7 1.1.1.3.7.16 BCBC-5B-0 14131123 P217556 Osbpl11 Enhancer P217556 Enhancer Unique Tile chr16:33105864-33106925 (+) NM_176840 + 1047 33104817 106326 Osbpl11 9430097N02Rik|AI132306|AU019795|ORP-11 oxysterol binding protein-like 11 MGI:2146553 Mm.26564 16 16 B3 OSBPL11 114885 2 CTTTCGTGAGCAGGATTGACTTT CCATGCTCCAGGATTAAGAGAGA 3 16 8 1.1.1.3.8.16 BCBC-5B-0 14131142 P218314 D330017J20Rik ProximalPromoter P218314 ProximalPromoter Unique Tile chr6:29866022-29866962 (+) NM_001037740;NM_177204; + 60 29867022 320609 D330017J20Rik FAM40B|mKIAA1170 RIKEN cDNA D330017J20 gene MGI:2444363 Mm.56097 6 6 A3.3 FAM40B 57464 0 AAAGTCATGGGTTACCATAGCGA TTGGCTGTAACTACTCTCCGAGG 3 16 9 1.1.1.3.9.16 BCBC-5B-0 14131161 P219064 Hp Enhancer P219064 Enhancer Unique Tile chr8:112465283-112466182 (-) NM_017370 - 1995 112468177 15439 Hp HP-1 haptoglobin MGI:96211 Mm.26730 8 8 D3|8 55.0 cM HP 3240 NM_175646 + 10148 112455135 234723 Txnl4b 0 AACTTCTCGAGTACTGCCTCGAA ACAGTCTGTGAACACTCAGCCCT 3 16 10 1.1.1.3.10.16 BCBC-5B-0 14131180 P220186 ProximalPromoter P220186 ProximalPromoter Unique Tile chr15:32188700-32189635 (+) 1 TCTGTCCATGAGGTAACCCTCTC GTACCCTCTGCTTAGTAGCTGCG 3 16 11 1.1.1.3.11.16 BCBC-5B-0 14131199 P220936 0610037D15Rik Enhancer P220936 Enhancer Unique Tile chr4:116207209-116208168 (-) NM_026714 + 349 116206860 68394 0610037D15Rik 4933430J04Rik RIKEN cDNA 0610037D15 gene MGI:1915644 Mm.425201 4 4 D1 NM_025962 - 953 116206256 67096 Mmachc 0 GGTCTTGCTTTCATTTGGTTTTG AGTATTGTCTTTTCTCCCAGCCC 3 16 12 1.1.1.3.12.16 BCBC-5B-0 14131218 P221776 Ghrh Enhancer P221776 Enhancer Unique Tile chr2:157027404-157028335 (-) NM_010285 - 9738 157038073 14601 Ghrh Ghrf growth hormone releasing hormone MGI:95709 Mm.389327 2 2 H1|2 89.0 cM GHRH 2691 NM_026968 + 30723 157059058 69161 Manbal 0 GCCAACTCAGTATAATTGCCTGG TTCCTTCATAGCAAGGCTCAGTC 3 16 13 1.1.1.3.13.16 BCBC-5B-0 14131237 P222898 Dbndd2 ProximalPromoter P222898 ProximalPromoter Unique Tile chr2:164176794-164177696 (+) NM_026797 + 61 164177757 52840 Dbndd2 1110017A21Rik|2900022J10Rik|AU041050|AW048677|D2Bwg0891e|R74724 dysbindin (dystrobrevin binding protein 1) domain containing 2 MGI:106562 Mm.195525 2 2 H3|2 93.0 cM DBNDD2 55861 NM_133779 + 11069 164188765 78928 Pigt 1 GCTGTCCTGTGTGCAGAATGTAG AGGACAGCTCCTCTAAACGCC 3 16 14 1.1.1.3.14.16 BCBC-5B-0 14131256 P223648 Olig1 Enhancer P223648 Enhancer Unique Tile chr16:91154860-91155839 (+) NM_016968 + 2788 91158627 50914 Olig1 AI836478|AW494459|Bhlhb6|Olg-1|Oligo1 oligodendrocyte transcription factor 1 MGI:1355334 Mm.39300 16 16 C3.3 OLIG1 116448 NM_016967 + 40452 91114408 50913 Olig2 2 GGAGAGAGAGAGAGAGAGAGCCC TGTACTTGCATTTGACTCTCCCA 3 16 15 1.1.1.3.15.16 BCBC-5B-0 14131275 P224770 B930037P14Rik ProximalPromoter P224770 ProximalPromoter Unique Tile chr19:5510640-5511575 (-) NM_001024560 - 151 5510489 225861 B930037P14Rik - RIKEN cDNA B930037P14 gene MGI:2444704 Mm.20071 19 19 A NM_023781 - 6853 5503787 75555 1700020D05Rik 1 GCCTCTCCCTACTGTCCATTTTT GAGGGTAGAGGTCACGTGTCAGT 3 16 16 1.1.1.3.16.16 BCBC-5B-0 14131294 P225610 Olfr1425 ProximalPromoter P225610 ProximalPromoter Unique Tile chr19:12141593-12142588 (-) NM_001011853 - 82 12141675 258155 Olfr1425 MOR239-7 olfactory receptor 1425 MGI:3031259 Mm.377363 19 19 A NM_146681 - 14798 12126795 258676 Olfr1424 0 AAAGCCTCATCCTTTTTCAGTCC AAAAGAAAGAGCACCATGCTCAC 3 16 17 1.1.1.3.17.16 BCBC-5B-0 14131313 P226466 Pdx1 P226466 Pdx1 Unique Tile chr2:153114122-153115030 (+) 0 GGTACCACCTGCTGAGCATCTAT ATGGTTTGGGTTTCCAGTTTCTT 3 16 18 1.1.1.3.18.16 BCBC-5B-0 14131332 P227204 Pdx1 P227204 Pdx1 End Repeat Tile chr3:19796332-19797265 (+) 2 AAGGTCTGTTAGATGATGACGGG ACACACACACACACACACACACA 3 16 19 1.1.1.3.19.16 BCBC-5B-0 14131351 P002338 Stratagene PCR 2 P002338 Spike Control Negative Stratagene PCR 2 3 16 20 1.1.1.3.20.16 BCBC-5B-0 14130991 P211076 Slc45a1 PufferfishHuman P211076 PufferfishHuman Unique Tile chr4:149450378-149451386 (-) NM_173774 - 44588 149495974 242773 Slc45a1 C230078B22|Dnb5 solute carrier family 45, member 1 MGI:2653235 Mm.29280 4 4 E2 SLC45A1 50651 0 CAGCTCTCAGGTCCCACATAAAG GCTGACAATTGAAGAAGTGGCTT 3 17 1 1.1.1.3.1.17 BCBC-5B-0 14131010 P211826 Shox2 PufferfishHuman P211826 PufferfishHuman Unique Tile chr3:67022872-67023832 (+) NM_013665 - 45868 67069700 20429 Shox2 6330543G17Rik|OG12|Og12x|Prx3|SHOT short stature homeobox 2 MGI:1201673 Mm.39093 3 3 E3-F1|3 31.6 cM SHOX2 6474 NM_025822 + 49800 67073632 66880 Rsrc1 0 TTTATGGCCCATCAGCTTCTTTA GCTGAGGTCTGAAATGAGATGGT 3 17 2 1.1.1.3.2.17 BCBC-5B-0 14131029 P212948 Cyba Enhancer P212948 Enhancer Unique Tile chr8:125322354-125323372 (-) NM_007806 - 3337 125319017 13057 Cyba b558 cytochrome b-245, alpha polypeptide MGI:1316658 Mm.271671 8 - CYBA 1535 NM_138656 - 6108 125329480 192156 Mvd 0 AGACCTATTGCCAGAGAGTGTGC TCATTTCTTAGAAGGGGGATGTG 3 17 3 1.1.1.3.3.17 BCBC-5B-0 14131048 P213788 F2rl2 Enhancer P213788 Enhancer Unique Tile chr13:96793355-96794363 (+) NM_010170 + 3292 96797655 14064 F2rl2 F730031A08|PAR3 coagulation factor II (thrombin) receptor-like 2 MGI:1298208 Mm.38878 13 13 D1|13 47.02 cM F2RL2 2151 0 AGGGTCAGAGGATAATGTGTGGA CAGGCAATTCCACCTCTAAAATG 3 17 4 1.1.1.3.4.17 BCBC-5B-0 14131067 P214538 BC031441 Enhancer P214538 Enhancer Unique Tile chr17:55541082-55542041 (+) NM_146249 - 752 55542793 240120 BC031441 MGC18735 cDNA sequence BC031441 MGI:2385323 Mm.294853 17 17 C NM_015766 + 3874 55545915 50498 Ebi3 0 ACAGTTCCCACCAACTTCCTACA GTGGGGATATGGCTCAGTAGATG 3 17 5 1.1.1.3.5.17 BCBC-5B-0 14131086 P215660 Obfc2b Enhancer P215660 Enhancer Unique Tile chr10:127812022-127812972 (+) NM_027257 - 227 127812745 69917 Obfc2b 2610036N15Rik|MGC30353|Nabp2 oligonucleotide/oligosaccharide-binding fold containing 2B MGI:1917167 Mm.46614 10 10 D3 OBFC2B 79035 NM_026259 + 1633 127814605 67588 Rnf41 0 TTATACCTGTCAGCAGCTCCCTC GGTCCATCCATCTTTCCCTCTAC 3 17 6 1.1.1.3.6.17 BCBC-5B-0 14131105 P216410 Grhpr Enhancer P216410 Enhancer Unique Tile chr4:45004534-45005514 (+) NM_080289 + 2024 45002510 76238 Grhpr 1110059D05Rik|6430629L09Rik glyoxylate reductase/hydroxypyruvate reductase MGI:1923488 Mm.196574 4 4 B2 GRHPR 9380 NM_173399 - 27856 45033370 230119 Zbtb5 0 AGGGTGAACATCATTCTGTGGAT CTGGTTTTAACATTGGCCTTGAG 3 17 7 1.1.1.3.7.17 BCBC-5B-0 14131124 P217250 4921511I16Rik Enhancer P217250 Enhancer Unique Tile chr8:49211300-49212360 (-) NM_172407 - 356 49212716 70925 4921511I16Rik AW208986|CARF RIKEN cDNA 4921511I16 gene MGI:1918175 Mm.53963 8 8 B1.1 CARF 55602 NM_023503 - 37325 49173975 69260 Ing2 0 GAACCATGTCTTCCTAGGGTGC TAGGCTGGGCTACACAGAGAAAC 3 17 8 1.1.1.3.8.17 BCBC-5B-0 14131143 P218290 V1rd15 ProximalPromoter P218290 ProximalPromoter Unique Tile chr7:23762534-23763548 (+) NM_203489 + 15 23763533 209824 V1rd15 Gm476 vomeronasal 1 receptor, D15 MGI:3033484 Mm.377233; Mm.421376 7 7 A3 NM_172483 + 27135 23790683 210135 Zfp180 0 AGTGGAGACTAGGCATCAGCTTG ACTATGAGCAGACATGGAGAGGG 3 17 9 1.1.1.3.9.17 BCBC-5B-0 14131162 P219040 Capsl Enhancer P219040 Enhancer Unique Tile chr15:9377338-9378236 (+) NM_029341 + 2516 9380752 75568 Capsl 1700028N11Rik|AW125205|MGC74120 calcyphosine-like MGI:1922818 Mm.82143 15 15 A1 CAPSL 133690 0 TGCTGACCTATGGGTATGTCCTT GGTGAGATGGCTCAGTGGTTAAG 3 17 10 1.1.1.3.10.17 BCBC-5B-0 14131181 P220162 Padi3 ProximalPromoter P220162 ProximalPromoter Unique Tile chr4:140082654-140083650 (-) NM_011060 - 70 140082724 18601 Padi3 AI507004|KIAA4171|Pad3|Pdi3|mKIAA4171 peptidyl arginine deiminase, type III MGI:1338891 Mm.20851 4 4 E1|4 71.0 cM PADI3 51702 NM_011059 - 34204 140117854 18599 Padi1 0 CCTGGTAGGAGGAAACAAGTCCT AGACACACGCACAATCCTCTGTA 3 17 11 1.1.1.3.11.17 BCBC-5B-0 14131200 P221002 Prkg1 Enhancer P221002 Enhancer Unique Tile chr19:31728872-31729849 (-) NM_011160;NM_001013833; - 500 31730349 19091 Prkg1 AW125416|CGKI|MGC132849|Prkg1b|Prkgr1b protein kinase, cGMP-dependent, type I MGI:108174 Mm.381170; Mm.381172; Mm.381170; Mm.381172; Mm.381170; Mm.381172; Mm.381170; Mm.381172; Mm.381170; Mm.381172; Mm.381170; Mm.381172; Mm.381170; Mm.381172; Mm.381170; Mm.381172; Mm.381170; Mm.381172; Mm.381170; Mm.381172; Mm.381170; Mm.381172; Mm.381170; Mm.381172; Mm.381170; Mm.381172; Mm.381170; Mm.381172; Mm.381170; Mm.381172; Mm.381170; Mm.381172; Mm.381170; Mm.381172; Mm.381170; Mm.381172; Mm.381170; Mm.381172; Mm.381170; Mm.381172 19 19 C2 PRKG1 5592 0 AATGTCTCATTTTCACGGCACTT GTGTCATCCAGCCGTGTTATGTA 3 17 12 1.1.1.3.12.17 BCBC-5B-0 14131219 P221752 Rcn3 ProximalPromoter P221752 ProximalPromoter Unique Tile chr7:44960152-44961051 (-) NM_026555 - 10 44960162 52377 Rcn3 6030455P07Rik|D530026G20Rik|D7Ertd671e|MGC102610|RLP49 reticulocalbin 3, EF-hand calcium binding domain MGI:1277122 Mm.29997 7 7 B3|7 23.1 cM RCN3 57333 NM_010189 - 10083 44971134 14132 Fcgrt 0 CGCGTCTGGGAAAGATCATATAG CTGAGTTAGCTCCCTACGCTGAG 3 17 13 1.1.1.3.13.17 BCBC-5B-0 14131238 P222874 Olfr1047 ProximalPromoter P222874 ProximalPromoter Unique Tile chr2:86029787-86030863 (-) NM_147012 - 21 86029808 259014 Olfr1047 MOR188-3 olfactory receptor 1047 MGI:3030881 Mm.377789 2 - OR8K3 219473 NM_147014 - 6809 86037672 259016 Olfr1048 0 TTCAGCTTCTGATCATTATGGCA CTGTAAGGTTGTGTCTCCCCATC 3 17 14 1.1.1.3.14.17 BCBC-5B-0 14131257 P223624 Gulp1 Enhancer P223624 Enhancer End Repeat Tile chr1:44496404-44497354 (+) NM_027506;NM_028450; + 166 44496238 70676 Gulp1 3110030A04Rik|5730529O06Rik|CED-6|Ced6|GULP GULP, engulfment adaptor PTB domain containing 1 MGI:1920407 Mm.133132 1 1 C1 GULP1 51454 0 CCTCTACAAGCCAGGGTAGGAAG TGTGTGTGTGTGTGTGTGTGTGT 3 17 15 1.1.1.3.15.17 BCBC-5B-0 14131276 P224464 Tmprss11d ProximalPromoter P224464 ProximalPromoter Unique Tile chr5:87447990-87448957 (-) NM_145561 - 42 87447948 231382 Tmprss11d AST|BC020151|MGC28382 transmembrane protease, serine 11d MGI:2385221 Mm.240139 5 5 E1 TMPRSS11D 9407 0 TTCTGTACTGAACCCAGGACCTC CTTTCGTGCTCTGTGTACCTGAA 3 17 16 1.1.1.3.16.17 BCBC-5B-0 14131295 P225586 Trappc1 ProximalPromoter P225586 ProximalPromoter Unique Tile chr11:69139255-69140196 (+) NM_001024206 + 22 69140174 245828 Trappc1 BET5|D11Ertd172e|MUM2 trafficking protein particle complex 1 MGI:1098727 Mm.28073 11 11 B3|11 37.0 cM TRAPPC1 58485 NM_172560 - 226 69139970 216846 Cntrob 0 AGATTTGGAAGGGAGGAAGACAC GGCAACCTCAAGAACCCTTAACT 3 17 17 1.1.1.3.17.17 BCBC-5B-0 14131314 P226442 Pdx1 P226442 Pdx1 Unique Tile chr7:135757347-135758254 (+) 0 CCTGTTAGGCCTAGACCTGATGC AATAGCTTGAGCATCATTCAGCA 3 17 18 1.1.1.3.18.17 BCBC-5B-0 14131333 P227180 Wnt7b Pdx1 P227180 Pdx1 Unique Tile chr15:85374607-85375539 (+) NM_009528 - 30297 85405836 22422 Wnt7b Wnt-7b wingless-related MMTV integration site 7B MGI:98962 Mm.306946 15 15 E2|15 46.9 cM WNT7B 7477 0 TGGTTTTAATGAGCCAAGTCCTC TGCCATCAAATCACCTAGAACAA 3 17 19 1.1.1.3.19.17 BCBC-5B-0 14131352 P002404 Stratagene PCR 7 P002404 Spike Control Negative Stratagene PCR 7 3 17 20 1.1.1.3.20.17 BCBC-5B-0 14130992 P211052 PufferfishHuman P211052 PufferfishHuman Unique Tile chr11:25999723-26000719 (-) 0 TCGAGGTCATGCCTTTACTGATT ATGGGAAAGATGCACCATAGAGA 3 18 1 1.1.1.3.1.18 BCBC-5B-0 14131011 P211802 PufferfishHuman P211802 PufferfishHuman Unique Tile chr1:190585236-190586272 (+) 0 TGCCAGATAGCTTGATTAATGGG TCACTCCTCTGGTCTGCTTTACC 3 18 2 1.1.1.3.2.18 BCBC-5B-0 14131030 P212642 miRNA P212642 miRNA Unique Tile chr9:118885496-118886418 (-) mmu-mir-26a-1 1 TGGATGAAGAGGGAGGTTAAACA GCCAATTTACCTGAATCATGAGC 3 18 3 1.1.1.3.3.18 BCBC-5B-0 14131049 P213764 Ebf3 Enhancer P213764 Enhancer Unique Tile chr7:137154967-137156045 (-) NM_010096 - 2179 137152788 13593 Ebf3 3110018A08Rik|KIAA4201|O/E-2|mKIAA4201 early B-cell factor 3 MGI:894289 Mm.258708 7 7 F3-F4 EBF3 253738 1 CCACAAACAGAGGCTGAAGAGTT AAGCCCATCACATAAGGTAACGA 3 18 4 1.1.1.3.4.18 BCBC-5B-0 14131068 P214514 Timm9 Enhancer P214514 Enhancer Unique Tile chr12:72054204-72055159 (-) NM_013896;NM_001024853;NM_001024854; - 94 72055253 30056 Timm9 2810011L15Rik|Tim10a|Timm10 translocase of inner mitochondrial membrane 9 homolog (yeast) MGI:1353436 Mm.207767 12 12 C3 TIMM9 26520 2 GTATGGTCCCTTTCCTCTGCTTT AGGGTTTCTCTATGTAGCCCCAG 3 18 5 1.1.1.3.5.18 BCBC-5B-0 14131087 P215636 Pdcl Enhancer P215636 Enhancer Unique Tile chr2:37182241-37183159 (-) NM_026176 - 1000 37181241 67466 Pdcl 1200011E13Rik|AW108059 phosducin-like MGI:1914716 Mm.30709 2 2 B PDCL 5082 NM_146374 + 28484 37153757 258371 Olfr368 0 TCATGCTCACCATTCTGATGTCT GCTGGAGTGGAGAAAAACTCAAA 3 18 6 1.1.1.3.6.18 BCBC-5B-0 14131106 P216476 Ing4 Enhancer P216476 Enhancer Unique Tile chr6:125001961-125002969 (+) NM_133345 + 2497 125005466 28019 Ing4 D6Wsu147e|D6Xrf92|p29ING4 inhibitor of growth family, member 4 MGI:107307 Mm.262547 6 6 F2|6 59.3 cM ING4 51147 NM_016845 + 12338 125015307 54137 Acrbp 0 CCTCCTGATCTTCAACAGCAAGT GGAAGGAGGCTGTTAAGGAAAAA 3 18 7 1.1.1.3.7.18 BCBC-5B-0 14131125 P217226 Eif2b5 Enhancer P217226 Enhancer Unique Tile chr16:20413873-20414838 (+) NM_172265 + 1425 20412448 224045 Eif2b5 - eukaryotic translation initiation factor 2B, subunit 5 epsilon MGI:2446176 Mm.233855 16 16 A3 EIF2B5 8893 NM_007889 + 15690 20430528 13544 Dvl3 0 CTTTCCAGGATTCTCCGTCTTTT CCAGCGTTTATACTCCTCTGTGG 3 18 8 1.1.1.3.8.18 BCBC-5B-0 14131144 P218266 Gfra2 ProximalPromoter P218266 ProximalPromoter Unique Tile chr14:69624935-69625851 (+) NM_008115 + 642 69625209 14586 Gfra2 - glial cell line derived neurotrophic factor family receptor alpha 2 MGI:1195462 Mm.32619 14 14 D3-E1 GFRA2 2675 1 ACTCCGGTGTAGCTTCCATCAC TAACAGCCAAGCAATGATAACGA 3 18 9 1.1.1.3.9.18 BCBC-5B-0 14131163 P219016 Ogfod1 ProximalPromoter P219016 ProximalPromoter Unique Tile chr8:96925438-96926359 (+) NM_177767 + 7 96926366 270086 Ogfod1 4930415J21Rik|AA387199|AA939912|AW061076|mKIAA1612 2-oxoglutarate and iron-dependent oxygenase domain containing 1 MGI:2442978 Mm.251085 8 8 C5 OGFOD1 55239 NM_026623 - 191 96926168 68219 Nudt21 0 TTGGCACTTTGGTAGACAAGACA CTACAGTTCCCGAAAACCCTCTT 3 18 10 1.1.1.3.10.18 BCBC-5B-0 14131182 P219856 Wdr61 Enhancer P219856 Enhancer Unique Tile chr9:54536306-54537227 (-) NM_001025376;NM_023191;NM_001025375; - 3641 54532665 66317 Wdr61 2700038L12Rik|2810418I05Rik|REC14 WD repeat domain 61 MGI:1917493 Mm.28437 9 9 C WDR61 80349 NM_013496 + 25717 54562944 12903 Crabp1 0 CCAGCCTTTGTTTAGGCCTAGTT CCTAGGACTCTCTCTCCTCTGGG 3 18 11 1.1.1.3.11.18 BCBC-5B-0 14131201 P220978 Dnase1l2 Enhancer P220978 Enhancer Unique Tile chr17:24172164-24173251 (-) NM_025718 - 1480 24170684 66705 Dnase1l2 4733401H14Rik|MGC118464 deoxyribonuclease 1-like 2 MGI:1913955 Mm.29017 17 17 A3.3 DNASE1L2 1775 NM_007893 - 9660 24182911 13560 E4f1 0 TACCTAAAGCCTGGAGGGAAGAG GGGTATCAGCTACCACAGACGAG 3 18 12 1.1.1.3.12.18 BCBC-5B-0 14131220 P221728 Olfr176; Olfr177 ProximalPromoter P221728 ProximalPromoter Unique Tile chr16:58815341-58816253 (-) NM_146993;NM_146996; - 63 58815404 258995; 258998 Olfr176; Olfr177 MOR184-8; MOR184-7 olfactory receptor 176; olfactory receptor 177 MGI:3030010; MGI:3030011 Mm.390843 16 - NM_146997 - 16221 58832474 258999 Olfr178 0 CAATATTTTTCCCTCCCTCAGGT CTGGGTGGTCTGAGAATCCTATG 3 18 13 1.1.1.3.13.18 BCBC-5B-0 14131239 P222850 Olfr397 ProximalPromoter P222850 ProximalPromoter Unique Tile chr11:73779749-73780747 (+) NM_146346 + 57 73780804 258343 Olfr397 MOR135-28 olfactory receptor 397 MGI:3030231 Mm.377443 11 - NM_146710 - 20054 73800801 258705 Olfr398 0 AAAGAAGGCCATGTGTTTCATGT ACACAAAGCCAATGCTTTAGGAA 3 18 14 1.1.1.3.14.18 BCBC-5B-0 14131258 P223690 Cyp11a1 Enhancer P223690 Enhancer Unique Tile chr9:57808920-57809907 (+) NM_019779 + 3242 57813149 13070 Cyp11a1 Cyp11a|Cypxia1|D9Ertd411e|P450scc|Scc cytochrome P450, family 11, subfamily a, polypeptide 1 MGI:88582 Mm.302865 9 9 B|9 31.0 cM CYP11A1 1583 0 TCCCTCTATGTGTTTGAATGGCT GAGAAGCAAAGGAATTTCACCCT 3 18 15 1.1.1.3.15.18 BCBC-5B-0 14131277 P224440 Tmem64 ProximalPromoter P224440 ProximalPromoter Unique Tile chr4:15191912-15192857 (+) NM_181401 + 120 15192977 100201 Tmem64 9630015D15Rik|AI790744|AV300874 transmembrane protein 64 MGI:2140359 Mm.38877 4 4 A2 TMEM64 169200 0 GCCTGGACATAGAAGTCAGCCTA AGACATAGCTGGGTGGTCGGT 3 18 16 1.1.1.3.16.18 BCBC-5B-0 14131296 P225562 Speer2 ProximalPromoter P225562 ProximalPromoter Unique Tile chr16:69744336-69745249 (-) NM_173069 - 15 69744321 224318 Speer2 SPEER-2 spermatogenesis associated glutamate (E)-rich protein 2 MGI:2668488 Mm.212743 16 16 C2 0 ACCCAACAAACCACAGAAACACT CCTTCCTCCTCTCTCTGGACTCT 3 18 17 1.1.1.3.17.18 BCBC-5B-0 14131315 P226418 Dlk1 Pdx1 P226418 Pdx1 Unique Tile chr12:109884717-109885624 (+) NM_010052 + 15405 109901029 13386 Dlk1 AW742678|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1 delta-like 1 homolog (Drosophila) MGI:94900 Mm.157069 12 12 E-F1|12 54.0 cM DLK1 8788 0 CATGTTCACACAGAGAAACAGCC TGTCTGCATTTCCTCAGAGAGTG 3 18 18 1.1.1.3.18.18 BCBC-5B-0 14131334 P226298 AI449175 Pdx1 P226298 Pdx1 Unique Tile chr8:72549942-72550845 (+) NM_172754 - 1564 72548378 234362 AI449175 AW108241|C530032E20|mszf62 expressed sequence AI449175 MGI:2142546 Mm.37919 8 8 B3.3 0 CCAGCCTGGTCTACAGAGTGAGT AAGTGTCCTATTCAGGCATGGAG 3 18 19 1.1.1.3.19.18 BCBC-5B-0 14131353 P002380 Stratagene PCR 5 P002380 Spike Control Negative Stratagene PCR 5 3 18 20 1.1.1.3.20.18 BCBC-5B-0 14130993 P211028 PufferfishHuman P211028 PufferfishHuman Unique Tile chr9:91260482-91261440 (-) 0 TTTCCCTTCTCAACTTTTCTCCC TGAAAGAAATGGCCTTAGAGCAG 3 19 1 1.1.1.3.1.19 BCBC-5B-0 14131012 P211868 PufferfishHuman P211868 PufferfishHuman Unique Tile chr17:51203347-51204304 (+) 0 GCTGGAGTCTTTGACTGTCTGGT CATATGCCAACAAATGCCTTGTA 3 19 2 1.1.1.3.2.19 BCBC-5B-0 14131031 P212618 miRNA P212618 miRNA Unique Tile chr8:87102586-87103503 (-) mmu-mir-23a 0 GTTGAGGCATGAAGACCAGAAGT ATATACCGTGCAACCGTGAAGAG 3 19 3 1.1.1.3.3.19 BCBC-5B-0 14131050 P213740 Bcar1 Enhancer P213740 Enhancer Unique Tile chr8:114631999-114632917 (-) NM_009954 - 1517 114630482 12927 Bcar1 AI385681|Cas|Crkas breast cancer anti-estrogen resistance 1 MGI:108091 Mm.3758 8 8 D3 BCAR1 9564 0 CCCACAGGCTAGTCTCTGAAGAA GGAGTGAGGGTGGGTCTCTAACT 3 19 4 1.1.1.3.4.19 BCBC-5B-0 14131069 P214490 Mocs2 Enhancer P214490 Enhancer Unique Tile chr13:115939189-115940122 (+) NM_013826 + 26 115939163 17434 Mocs2 AI415403 molybdenum cofactor synthesis 2 MGI:1336894 Mm.19027 13 13 D2.2 MOCS2 4338 0 TCCTAGGTGCCAGGTAAGAGTTG GGTGGTGGTGACACATGTCTTTA 3 19 5 1.1.1.3.5.19 BCBC-5B-0 14131088 P215330 Ifitm3 Enhancer P215330 Enhancer Unique Tile chr7:140859640-140860639 (-) NM_025378 - 1377 140862016 66141 Ifitm3 1110004C05Rik|Cd225|Cdw217|Fgls|IP15|mil-1 interferon induced transmembrane protein 3 MGI:1913391 Mm.141021 7 7 F5 IFITM3 10410 NM_001033632 - 7573 140868212 213002 Ifitm6 0 AGATGGTGTCAAAAGTTCCATGC AAAAAGTGTGTTCTGGGAAACCA 3 19 6 1.1.1.3.6.19 BCBC-5B-0 14131107 P216452 Prmt2 Enhancer P216452 Enhancer Unique Tile chr10:75680494-75681446 (-) NM_133182 - 45 75681491 15468 Prmt2 AI504737|Hrmt1l1 protein arginine N-methyltransferase 2 MGI:1316652 Mm.32020 10 10 C1|10 41.0 cM PRMT2 3275 NM_009115 + 16122 75697568 20203 S100b 0 GCTTAGACATCTGGATCGCAAGT TCATGTCTCATAACTGGGGCTTT 3 19 7 1.1.1.3.7.19 BCBC-5B-0 14131126 P217202 Dnttip2 Enhancer P217202 Enhancer Unique Tile chr3:122266692-122267592 (+) NM_153806 + 257 122266435 99480 Dnttip2 4930588M11Rik|AA408582|AU014960|HSU15552|MGC27716 deoxynucleotidyltransferase, terminal, interacting protein 2 MGI:1923173 Mm.278808 3 3 G1 DNTTIP2 30836 NM_008129 + 29079 122237613 14630 Gclm 0 TACTGTTAGGACAGTACCGGGGA CCATAGAAACCCCTGAAACATGA 3 19 8 1.1.1.3.8.19 BCBC-5B-0 14131145 P218242 2210021J22Rik ProximalPromoter P218242 ProximalPromoter Unique Tile chr15:85639446-85640516 (-) NM_197998 - 21 85639425 72355 2210021J22Rik - RIKEN cDNA 2210021J22 gene MGI:1919605 Mm.33706 15 15 E2 NM_011105 - 8983 85649499 18766 Pkdrej 0 ATGTCTCCTGGTGCAATAGTGGT CCACAGTACTAGTTCCGCCTCAC 3 19 9 1.1.1.3.9.19 BCBC-5B-0 14131164 P219082 Nfe2l1 ProximalPromoter P219082 ProximalPromoter Unique Tile chr11:96640155-96641074 (-) NM_008686 - 3650 96643805 18023 Nfe2l1 AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11 nuclear factor, erythroid derived 2,-like 1 MGI:99421 Mm.6743 11 11 D-E|11 57.0 cM NFE2L1 4779 NM_019877 + 24891 96665965 56358 Copz2 0 ACCAAATGCTCTCCTTTTCTCCT AAACTTGTTACCTAGGCTGCCG 3 19 10 1.1.1.3.10.19 BCBC-5B-0 14131183 P219832 1110061N23Rik Enhancer P219832 Enhancer Unique Tile chr2:25065401-25066309 (-) NM_176834 + 455 25064946 68846 1110061N23Rik - RIKEN cDNA 1110061N23 gene MGI:1916096 Mm.24777 2 2 A3 NM_026415 - 3495 25061906 67859 2310002J15Rik 0 TAGCCCACAGGAGTTAGCTTCAA ATGAAGATTGTCCACCCTGAAAA 3 19 11 1.1.1.3.11.19 BCBC-5B-0 14131202 P220954 1700108E19Rik Enhancer P220954 Enhancer Unique Tile chr7:41441746-41442702 (+) NM_029460 + 615 41441131 75835 1700108E19Rik 4930562N12Rik RIKEN cDNA 1700108E19 gene Mm.159597; Mm.427156; Mm.429454; Mm.159597; Mm.427156; Mm.429454; Mm.159597; Mm.427156; Mm.429454; Mm.159597; Mm.427156; Mm.429454 5 - NM_023363 + 21121 41420625 67607 2810426N06Rik 0 GGAACAGCTGATACCAGAGCCTA TGAAGTTGTCACTTGCTGCTCAT 3 19 12 1.1.1.3.12.19 BCBC-5B-0 14131221 P221704 Olfr622 ProximalPromoter P221704 ProximalPromoter Unique Tile chr7:103513864-103514810 (-) NM_147083 - 95 103513959 259087 Olfr622 MOR26-1 olfactory receptor 622 MGI:3030456 Mm.377832 7 - NM_147122 - 20259 103535069 259126 Olfr623 0 GAGAGCTGCTGCATTAGAGGAAG AACAGAGATGCCAATCCAACAGT 3 19 13 1.1.1.3.13.19 BCBC-5B-0 14131240 P222544 Pdpk1 Enhancer P222544 Enhancer Unique Tile chr17:23867972-23868780 (-) NM_011062 - 394 23869174 18607 Pdpk1 Pdk1 3-phosphoinositide dependent protein kinase-1 MGI:1338068 Mm.10504 17 17 A3.3 PDPK1 5170 NM_172935 - 22579 23891359 245847 Amdhd2 1 GGAAGTGCCTGGAAAGTTTGTTT CTCTTGAGCCTCTGGTAGCAACA 3 19 14 1.1.1.3.14.19 BCBC-5B-0 14131259 P223666 Eif5 ProximalPromoter P223666 ProximalPromoter Unique Tile chr12:111984990-111985936 (+) NM_173363 + 76 111986012 217869 Eif5 D12Ertd549e|MGC36374|MGC36509 eukaryotic translation initiation factor 5 MGI:95309 Mm.271222 12 12 F1|12 57.0 cM EIF5 1983 NM_021516;NM_022801; + 36842 112022778 17169 Mark3 0 CCTTCTTCCACAACACTGCTCTT CTCCCAACTTCTCTTGTCATTGG 3 19 15 1.1.1.3.15.19 BCBC-5B-0 14131278 P224416 B3galnt2 ProximalPromoter P224416 ProximalPromoter Unique Tile chr13:13745788-13746881 (+) NM_178640 + 79 13746802 97884 B3galnt2 A930105D20Rik|C80633|D230016N13Rik|MGC103263 UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2 MGI:2145517 Mm.21686 13 13 A1 B3GALNT2 148789 2 GAAAGATCAAGAGTTCAAGGCCA ATAGCGAGGGGACCTAAGAACAC 3 19 16 1.1.1.3.16.19 BCBC-5B-0 14131297 P225538 Olfr205 ProximalPromoter P225538 ProximalPromoter Unique Tile chr16:59271667-59272696 (-) NM_001011736 - 96 59271763 257881 Olfr205 MOR182-11P olfactory receptor 205 MGI:3030039 Mm.377282 16 16 C1.3 NM_146992 - 14006 59257661 258994 Olfr204 0 AGCAAAACTCCTCTTTCCCATTC TGAAGAAGAACACCAGGAAGAGG 3 19 17 1.1.1.3.17.19 BCBC-5B-0 14131316 P226484 Pdx1 P226484 Pdx1 Unique Tile chr7:109178303-109179211 (+) 0 CCAGGGGAAACTTACTGCTTCTA GATGGCTTTCAAACCTTTCACAC 3 19 18 1.1.1.3.18.19 BCBC-5B-0 14131335 P226274 1110012J17Rik Pdx1 P226274 Pdx1 Unique Tile chr17:66339201-66340104 (+) NM_172963 - 48346 66290855 68617 1110012J17Rik D130071O13|MGC77963|mKIAA0802|t8219b25 RIKEN cDNA 1110012J17 gene MGI:1915867 Mm.33421 17 17 E1.1 KIAA0802 23255 0 CTTCCATTTCTGTGAGGCTCCTA GTAGCAGGTCATGTCTTCTGGGT 3 19 19 1.1.1.3.19.19 BCBC-5B-0 14131354 P002356 Stratagene PCR 3 P002356 Spike Control Negative Stratagene PCR 3 3 19 20 1.1.1.3.20.19 BCBC-5B-0 14131355 P211652 PufferfishHuman P211652 PufferfishHuman Unique Tile chr12:119105217-119106316 (-) 0 GAAACACCAGGAAGCAAGGAGTA ATTCATTTCAAGGGGTCCAGAAT 4 1 1 1.1.1.4.1.1 BCBC-5B-0 14131374 P212402 miRNA P212402 miRNA Unique Tile chr14:60590668-60591750 (-) mmu-mir-16-1 0 CCTCTAACCTGATTGACTCCTGC TTATGTGCCAAGCTCTGATTTGA 4 1 2 1.1.1.4.2.1 BCBC-5B-0 14131393 P213524 Tpd52 Enhancer P213524 Enhancer Unique Tile chr3:8986328-8987254 (-) NM_001025264;NM_009412;NM_001025261;NM_001025262;NM_001025263; - 267 8987521 21985 Tpd52 AI043038|mD52 tumor protein D52 MGI:107749 Mm.371590 3 3 A1-A2 TPD52 7163 0 AGAGGCCACAGAGGTGTTAGGAT CCCAGGTTTTCCGATACAAACTT 4 1 3 1.1.1.4.3.1 BCBC-5B-0 14131412 P214364 AA536749 Enhancer P214364 Enhancer Unique Tile chr11:59479403-59480312 (+) NM_201245;NM_012027; + 579 59478824 26936 AA536749 9530046C02|AI647711|C76423|MGC67316|RIP3|Rhoip3|mKIAA0864|p116Rip expressed sequence AA536749 MGI:1349438 Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074; Mm.2402; Mm.392074 11 11 B1.3 M-RIP 23164 0 AAAAATGTCTGGTTTCCCTGGAT TCCACTCTAGTTTGCCCCATAAA 4 1 4 1.1.1.4.4.1 BCBC-5B-0 14131431 P215114 Map2k2 Enhancer P215114 Enhancer Unique Tile chr10:80509299-80510382 (+) NM_023138 + 206 80509093 26396 Map2k2 AA589381|MEK2|MK2|Prkmk2 mitogen activated protein kinase kinase 2 MGI:1346867 Mm.275436 10 10 C1|10 43.0 cM MAP2K2 5605 NM_145365 - 7298 80502001 208677 Creb3l3 1 GTTACCGGCACTCACTATCAACC TCCACTTTCCACTAGGTCACCAT 4 1 5 1.1.1.4.5.1 BCBC-5B-0 14131450 P216236 Kif20a Enhancer P216236 Enhancer Unique Tile chr18:34752431-34753337 (-) NM_009004 + 2598 34749833 19348 Kif20a AA415432|Rab6kifl kinesin family member 20A MGI:1201682 Mm.258846 18 18 B1|18 17.0 cM KIF20A 10112 NM_030147 - 2820 34749611 78656 Brd8 0 TGTCTGTCTCTTATGCTGATGGC GCAGAACTGGCTCATCTACACCT 4 1 6 1.1.1.4.6.1 BCBC-5B-0 14131469 P216986 Pitpnc1 Enhancer P216986 Enhancer Unique Tile chr11:107284942-107286022 (-) NM_145823 - 648 107286670 71795 Pitpnc1 1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|MGC118005|RDGBB|RDGBB1|rdgB-beta phosphatidylinositol transfer protein, cytoplasmic 1 MGI:1919045 Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413; Mm.340968; Mm.397413 11 11 E1 PITPNC1 26207 NM_025894 + 9577 107295599 66997 Psmd12 1 CTCAAGGAGTACCGAATCTGCAT ATACAAATACGTCGTGGATCGCT 4 1 7 1.1.1.4.7.1 BCBC-5B-0 14131488 P217826 D930049A15Rik Enhancer P217826 Enhancer Unique Tile chr14:24293162-24294134 (+) NM_001033402 + 640 24292522 328364 D930049A15Rik C130026E14 RIKEN cDNA D930049A15 gene MGI:3041228 Mm.227484; Mm.405458; Mm.227484; Mm.405458; Mm.227484; Mm.405458 14 14 A3 NM_183208 + 687 24292475 328365 Rai17 1 GGAAAGATGTGAAGTTGTGCTCC AGGCACAAGGTGGAACTGTAAAC 4 1 8 1.1.1.4.8.1 BCBC-5B-0 14131507 P218866 Olfr1093 ProximalPromoter P218866 ProximalPromoter Unique Tile chr2:86585593-86586510 (+) NM_146366 + 60 86586570 258363 Olfr1093 MOR179-6 olfactory receptor 1093 MGI:3030927 Mm.223054 2 - NM_181818 - 21326 86607836 257913 Olfr141 1 GAATTTGAAGACCTTCTGGGACA TCTTAGGGCATCGTGACTACCAT 4 1 9 1.1.1.4.9.1 BCBC-5B-0 14131526 P219616 V1rh7 ProximalPromoter P219616 ProximalPromoter Unique Tile chr13:22628533-22629451 (-) NM_134216 - 33 22628500 171250 V1rh7 - vomeronasal 1 receptor, H7 MGI:2159665 Mm.377205 13 13 A3.1 NM_134217 - 28138 22600395 171251 V1rh8 0 TCACACAGGACTTTTTCAGGACA CAGGATGCACAGACTTTTGAAGA 4 1 10 1.1.1.4.10.1 BCBC-5B-0 14131545 P220738 Qscn6l1 ProximalPromoter P220738 ProximalPromoter Unique Tile chr2:26059473-26060487 (-) NM_153559 - 65 26059408 227638 Qscn6l1 BC030934|MGC31729|QSOX2|SOXN quiescin Q6-like 1 MGI:2387194 Mm.116769 2 2 A3 QSCN6L1 169714 NM_001039653 - 30908 26028565 16871 Lhx3 0 AGGGTTTCTCTGTATAGCCCTGG CCCAGGCACTACTCTTCGTTCT 4 1 11 1.1.1.4.11.1 BCBC-5B-0 14131564 P221578 Atp1b2 Enhancer P221578 Enhancer Unique Tile chr11:69420410-69421310 (-) NM_013415 - 714 69422024 11932 Atp1b2 Amog|Atpb-2 ATPase, Na+/K+ transporting, beta 2 polypeptide MGI:88109 Mm.235204 11 11 B3|11 40.0 cM ATP1B2 482 NM_011367 - 12753 69434063 20415 Shbg 1 CGAATCAGCGGTCTAATCTCTCT TGTTCCAATCTCCCTGAACTCTC 4 1 12 1.1.1.4.12.1 BCBC-5B-0 14131583 P222328 1700030K09Rik ProximalPromoter P222328 ProximalPromoter Unique Tile chr8:75371810-75372748 (+) NM_028170 + 166 75372914 72254 1700030K09Rik - RIKEN cDNA 1700030K09 gene MGI:1919504 Mm.275872; Mm.30136; Mm.275872; Mm.30136; Mm.275872; Mm.30136; Mm.275872; Mm.30136; Mm.275872; Mm.30136; Mm.275872; Mm.30136; Mm.275872; Mm.30136; Mm.275872; Mm.30136; Mm.275872; Mm.30136 8 8 B3.3 C19orf44 84167 NM_029782;NM_028500; - 19 75372767 73316 Calr3 0 GCTACAGCATGGTTCCAATTTTC AGTTGTAGTTTCTGAGTTGCGCC 4 1 13 1.1.1.4.13.1 BCBC-5B-0 14131602 P223450 Tmem132e Enhancer P223450 Enhancer Unique Tile chr11:82203016-82203924 (+) NM_023438 + 1170 82205094 270893 Tmem132e Gm644 transmembrane protein 132E MGI:2685490 Mm.341593 11 11 C TMEM132E 124842 1 TGAGAGTACAGAGGGGCAGTTTC AGGCGGCCTAGAAAAGATAGAGA 4 1 14 1.1.1.4.14.1 BCBC-5B-0 14131621 P224200 Cart Enhancer P224200 Enhancer Unique Tile chr13:100998364-100999543 (-) NM_013732 - 1349 101000892 27220 Cart - cocaine and amphetamine regulated transcript MGI:1351330 Mm.75498 13 13 D1 CART 9607 1 GATGCAAGAATCTGGGTGATTTC TCACACACACTGGGAAGAGAGAG 4 1 15 1.1.1.4.15.1 BCBC-5B-0 14131640 P225040 Mobkl1a ProximalPromoter P225040 ProximalPromoter Unique Tile chr5:89794419-89795377 (+) NM_026735 + 80 89795457 68473 Mobkl1a 1110003E08Rik|AU015450|B230364F10|MGC129510|MGC129511 MOB1, Mps One Binder kinase activator-like 1A (yeast) MGI:1915723 Mm.35764; Mm.392493; Mm.35764; Mm.392493; Mm.35764; Mm.392493; Mm.35764; Mm.392493; Mm.35764; Mm.392493; Mm.35764; Mm.392493; Mm.35764; Mm.392493; Mm.35764; Mm.392493; Mm.35764; Mm.392493; Mm.35764; Mm.392493; Mm.35764; Mm.392493; Mm.35764; Mm.392493; Mm.35764; Mm.392493; Mm.35764; Mm.392493; Mm.35764; Mm.392493; Mm.35764; Mm.392493; Mm.35764; Mm.392493; Mm.35764; Mm.392493; Mm.35764; Mm.392493; Mm.35764; Mm.392493 5 5 E2 MOBKL1A 92597 NM_178700 - 43687 89750732 231413 Grsf1 0 TCTTTTGGAACGCTAAGCTCAAG CCACATTAGGATTACCTTCGGGT 4 1 16 1.1.1.4.16.1 BCBC-5B-0 14131659 P227708 Pdx1 P227708 Pdx1 Unique Tile chr18:55027462-55028431 (+) 0 TTGCCAGAAGGTTACTGCATTTT CCTCTCCACTGACTTAGAGCCAC 4 1 17 1.1.1.4.17.1 BCBC-5B-0 14131678 P227114 Pdx1 P227114 Pdx1 Unique Tile chr7:111457067-111457996 (+) 0 CTTTTGTGCCATTTATTTCTGCC TGTGAATCTGCCAAGAGTGATGT 4 1 18 1.1.1.4.18.1 BCBC-5B-0 14131697 P002332 Stratagene PCR 1 P002332 Spike Control Negative Stratagene PCR 1 4 1 19 1.1.1.4.19.1 BCBC-5B-0 14131716 P003387 Cy3 Anchor P003387 Anchor Control Positive Cy3 Anchor 4 1 20 1.1.1.4.20.1 BCBC-5B-0 14131356 P211628 Comtd1 PufferfishHuman P211628 PufferfishHuman Unique Tile chr14:20654821-20655873 (-) NM_026965 - 17359 20637462 69156 Comtd1 1810030M08Rik catechol-O-methyltransferase domain containing 1 MGI:1916406 Mm.11827 14 14 B COMTD1 118881 NM_176925 + 17823 20636998 319486 A430057M04Rik 2 ACCTTAAGGCCGAGGATGACTAC CTTCAGGTAGTGAGGAGGAGCAG 4 2 1 1.1.1.4.1.2 BCBC-5B-0 14131375 P212378 miRNA P212378 miRNA Unique Tile chr12:117692780-117693731 (-) mmu-mir-153 0 GCTAGTTACCCGGTTTACTCCGT CTGTCAAACCGACAAACCCTTAC 4 2 2 1.1.1.4.2.2 BCBC-5B-0 14131394 P213218 Mitf Enhancer P213218 Enhancer Unique Tile chr6:97955041-97956033 (+) NM_008601 + 1221 97957254 17342 Mitf MGC124309|MGC124310|bw|mi|vit|vitiligo|wh microphthalmia-associated transcription factor MGI:104554 Mm.100641; Mm.333284; Mm.100641; Mm.333284; Mm.100641; Mm.333284; Mm.100641; Mm.333284; Mm.100641; Mm.333284; Mm.100641; Mm.333284; Mm.100641; Mm.333284; Mm.100641; Mm.333284; Mm.100641; Mm.333284; Mm.100641; Mm.333284; Mm.100641; Mm.333284; Mm.100641; Mm.333284; Mm.100641; Mm.333284; Mm.100641; Mm.333284; Mm.100641; Mm.333284; Mm.100641; Mm.333284; Mm.100641; Mm.333284 6 6 D3|6 40.0 cM MITF 4286 0 CTGTCTTCCCAGAAACAGCAACT GCAGGAGCAGAATGTGCTTATTT 4 2 3 1.1.1.4.3.2 BCBC-5B-0 14131413 P214340 Mapk3 Enhancer P214340 Enhancer Unique Tile chr7:126551076-126552013 (+) NM_011952 + 297 126550779 26417 Mapk3 Erk-1|Erk1|Esrk1|Prkm3|p44|p44erk1|p44mapk mitogen activated protein kinase 3 MGI:1346859 Mm.8385 7 7 F3|7 61.0 cM MAPK3 5595 NM_024228 + 5548 126557561 68616 Gdpd3 0 GAGGACTAGGCGCTACTTTCTCC CCTATAACATTCTCATGGCGGAA 4 2 4 1.1.1.4.4.2 BCBC-5B-0 14131432 P215090 Edg7 Enhancer P215090 Enhancer Unique Tile chr3:146161514-146162484 (+) NM_022983 + 3144 146158370 65086 Edg7 lpA3 endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor 7 MGI:1929469 Mm.155520 3 3 H2|3 70.5 cM EDG7 23566 0 CCTTGTCCATTTACCTTCGTGAG CCCTTTATAACGCCACAAGTCAG 4 2 5 1.1.1.4.5.2 BCBC-5B-0 14131451 P216212 Bag1 Enhancer P216212 Enhancer Unique Tile chr4:41132267-41133288 (+) NM_009736 - 3588 41136876 12017 Bag1 Rap46 Bcl2-associated athanogene 1 MGI:108047 Mm.688 4 4 B1 BAG1 573 NM_029814 + 3935 41137223 76959 Chmp5 0 GAAGAGCTTTGATGGAAAAAGCA GGAGCATTTTCAGTTATTTGCCT 4 2 6 1.1.1.4.6.2 BCBC-5B-0 14131470 P217052 Habp2 Enhancer P217052 Enhancer Unique Tile chr19:56342421-56343391 (+) NM_146101 + 1234 56341187 226243 Habp2 AI035669|HABP|HGFAL|MGC28705|PHBP hyaluronic acid binding protein 2 MGI:1196378 Mm.25791 19 19 D2 HABP2 3026 0 TGCATCCAGTTAAGCACTTTTGA GCTAGCACTGGGGACTGACTCTA 4 2 7 1.1.1.4.7.2 BCBC-5B-0 14131489 P217802 Eif5a Enhancer P217802 Enhancer Unique Tile chr11:69736349-69737315 (-) NM_181582 - 109 69737424 276770 Eif5a AA410058|D19Wsu54e|Eif4d|MGC6725 eukaryotic translation initiation factor 5A MGI:106248 Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265; Mm.196607; Mm.425265 11 11 B3 EIF5A 1984 NM_026988 - 135 69737450 69202 2610009E16Rik 1 GCTACGAACGAGAGACGGAACTA TAACTCCCAAACAAAACACGACA 4 2 8 1.1.1.4.8.2 BCBC-5B-0 14131508 P218842 H2-M10.4 ProximalPromoter P218842 ProximalPromoter Unique Tile chr17:36070453-36071361 (-) NM_177634 - 71 36070382 224753 H2-M10.4 15H histocompatibility 2, M region locus 10.4 MGI:1276527 Mm.246581 17 17 B1 0 CACTTTGGAGCCAGTAGCAGATT TGATTGGCTTCTCGTAGATTTCC 4 2 9 1.1.1.4.9.2 BCBC-5B-0 14131527 P219592 Olfr1239 ProximalPromoter P219592 ProximalPromoter Unique Tile chr2:89219407-89220336 (-) NM_146970 - 157 89219250 258972 Olfr1239 MOR231-3 olfactory receptor 1239 MGI:3031073 Mm.223363 2 - NM_146790 - 11491 89207916 258786 Olfr1238 0 TTCTCTTCCTCTCTTCCTCCCTC AGGAGTCTCCAAATTCAATGGTG 4 2 10 1.1.1.4.10.2 BCBC-5B-0 14131546 P220432 Olfr498 ProximalPromoter P220432 ProximalPromoter Unique Tile chr7:108255588-108256521 (+) NM_146307 + 19 108256502 258304 Olfr498 MOR204-36 olfactory receptor 498 MGI:3030332 Mm.377424 7 - NM_146738 + 41839 108213749 258733 Olfr497 0 ACAAGAGAGTGTTGGGTCCTCTG CATCCTCTAGGAAAGCCATGAGA 4 2 11 1.1.1.4.11.2 BCBC-5B-0 14131565 P221554 Olfr781 ProximalPromoter P221554 ProximalPromoter Unique Tile chr10:128734972-128735896 (+) NM_146728 + 65 128735831 258723 Olfr781 MOR114-6 olfactory receptor 781 MGI:3030615 Mm.271534 10 - NM_146284 + 10399 128724573 258281 Olfr780 0 CATCCCAATCATAGCTTCACCTC ATTTGCAGCCGAATATCATCTGT 4 2 12 1.1.1.4.12.2 BCBC-5B-0 14131584 P222304 2810457I06Rik ProximalPromoter P222304 ProximalPromoter Unique Tile chr9:40908903-40909834 (-) NM_176860 - 340 40908563 72828 2810457I06Rik BB125008|p70 RIKEN cDNA 2810457I06 gene MGI:1920078 Mm.133615 9 9 A5.1 STS-1 84959 0 GGCTATACAGGTAGGCATCCTCA ACAGCCAGCCATAGTAGGAATTG 4 2 13 1.1.1.4.13.2 BCBC-5B-0 14131603 P223426 Olfr521 ProximalPromoter P223426 ProximalPromoter Unique Tile chr7:99640206-99641109 (+) NM_146356 + 137 99641246 258353 Olfr521 MGC123835|MOR101-2 olfactory receptor 521 MGI:3030355 Mm.377450 7 - NM_001002795 - 14462 99655571 442845 F730035P03Rik 0 TACAAAGCACCCCTTTCCATCTA AGTACAGGGGTTCTGTCTTGTGC 4 2 14 1.1.1.4.14.2 BCBC-5B-0 14131622 P224266 Olfr20 ProximalPromoter P224266 ProximalPromoter Unique Tile chr11:73168935-73169951 (+) NM_146923 + 2 73169949 258925 Olfr20 MOR135-11|MTPCR06|MTPCR55|Olfr21 olfactory receptor 20 MGI:109315 Mm.246526 11 - NM_146922 + 20994 73190945 258924 Olfr376 0 GAAATGAAAGAGACCCCCATACC ATGCTGGGTCACCAGATTCTTTA 4 2 15 1.1.1.4.15.2 BCBC-5B-0 14131641 P225016 Acaca ProximalPromoter P225016 ProximalPromoter Unique Tile chr11:84010616-84011524 (+) NM_133360 + 134 84011658 107476 Acaca Acac|Acc1|Gm738 acetyl-Coenzyme A carboxylase alpha MGI:108451 Mm.31374; Mm.352014; Mm.31374; Mm.352014; Mm.31374; Mm.352014; Mm.31374; Mm.352014; Mm.31374; Mm.352014; Mm.31374; Mm.352014; Mm.31374; Mm.352014; Mm.31374; Mm.352014; Mm.31374; Mm.352014; Mm.31374; Mm.352014; Mm.31374; Mm.352014; Mm.31374; Mm.352014; Mm.31374; Mm.352014; Mm.31374; Mm.352014; Mm.31374; Mm.352014; Mm.31374; Mm.352014; Mm.31374; Mm.352014; Mm.31374; Mm.352014 11 11 C ACACA 31 NM_001037932 - 26945 83983671 628813 RP23-340N22.1 1 GCTTCTTGAGTGCTGGGATTAAA TAAGAACTGGCTTGCTTGGCTAC 4 2 16 1.1.1.4.16.2 BCBC-5B-0 14131660 P227684 Ifi30 Pdx1 P227684 Pdx1 Unique Tile chr8:73699692-73700658 (+) NM_023065 - 4054 73695638 65972 Ifi30 GILT|IP30 interferon gamma inducible protein 30 MGI:2137648 Mm.30241 8 8 B3.3 IFI30 10437 NM_008841 - 4950 73705608 18709 Pik3r2 0 CTGAGAAGCCATAGTGACCATCC AGCTGCTGTATAGGGCAGAAAGA 4 2 17 1.1.1.4.17.2 BCBC-5B-0 14131679 P227090 Man1c1 Pdx1 P227090 Pdx1 Unique Tile chr4:134006548-134007476 (+) NM_207237 - 30182 133976366 230815 Man1c1 AI593348 mannosidase, alpha, class 1C, member 1 MGI:2446214 Mm.18905 4 4 D3 MAN1C1 57134 NM_145554 - 32543 134040019 100017 Ldlrap1 0 TTCATGTCTGAACCTAGTGTGCG CCAGCTAAGAAAGGGGACTGAAT 4 2 18 1.1.1.4.18.2 BCBC-5B-0 14131698 P227354 Pdx1 P227354 Pdx1 Unique Tile chr13:58929624-58930565 (+) 0 TTAGATGGATGCAAGGGATGAAT TGGCAGTGACAGAAGAGTAATGC 4 2 19 1.1.1.4.19.2 BCBC-5B-0 14131717 P003339 Cy3 Anchor P003339 Anchor Control Positive Cy3 Anchor 4 2 20 1.1.1.4.20.2 BCBC-5B-0 14131357 P211604 Pax2 PufferfishHuman P211604 PufferfishHuman Unique Tile chr19:44800933-44801855 (+) NM_011037 + 8849 44810704 18504 Pax2 Pax-2 paired box gene 2 MGI:97486 Mm.192158 19 19 C3|19 43.0 cM PAX2 5076 2 TGTTAGGGCCTCTCCTTTCTTTC GGACTGCCTCTCTCTGTTCTCTG 4 3 1 1.1.1.4.1.3 BCBC-5B-0 14131376 P212444 miRNA P212444 miRNA Unique Tile chr9:67033466-67034370 (+) mmu-mir-190 0 CAATACCTAGGACTCCCACAACG GGCTGATTCATATTCTGAGTGGG 4 3 2 1.1.1.4.2.3 BCBC-5B-0 14131395 P213194 Smad1 Enhancer P213194 Enhancer Unique Tile chr8:82294158-82295094 (-) NM_008539 - 446 82295540 17125 Smad1 AI528653|Madh1|Madr1|Mlp1|MusMLP MAD homolog 1 (Drosophila) MGI:109452 Mm.223717 8 8 C2 SMAD1 4086 1 CTGAAGGAAATCTGGGACGAG AGAGAGATTGATGCTGTGAAGGG 4 3 3 1.1.1.4.3.3 BCBC-5B-0 14131414 P214316 Peci Enhancer P214316 Enhancer Unique Tile chr13:35004231-35005295 (-) NM_011868 - 2650 35001581 23986 Peci ACBD2|DRS1|HCA88 peroxisomal delta3, delta2-enoyl-Coenzyme A isomerase MGI:1346064 Mm.28883 13 13 A4 PECI 10455 NM_026947 - 32957 34971274 69123 1810022C23Rik 0 GAAGAGTGCAGAGTGCTTTGTGA GGACATCCCAACCTATTCTTTCC 4 3 4 1.1.1.4.4.3 BCBC-5B-0 14131433 P215066 B4galt1 Enhancer P215066 Enhancer Unique Tile chr4:41039079-41040053 (-) NM_022305 - 2616 41042669 14595 B4galt1 AA407245|B-1,4-GalT|GalT|Ggtb|Ggtb2 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 MGI:95705 Mm.15622 4 4 A5|4 18.6 cM B4GALT1 2683 1 TGTGTAGTGTCAAGCCCATCTGT ACACACACACACACACACACACA 4 3 5 1.1.1.4.5.3 BCBC-5B-0 14131452 P215906 Mllt3 Enhancer P215906 Enhancer Unique Tile chr4:87503023-87504000 (-) NM_027326;NM_029931; - 503 87504503 70122 Mllt3 2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e myeloid/lymphoid or mixed lineage-leukemia translocation to 3 homolog (Drosophila) MGI:1917372 Mm.288898 4 4 C4 MLLT3 4300 1 GGTGGAAGGAGGCGAATAATAAC CTCCTTGAAACGCACATAAAAGG 4 3 6 1.1.1.4.6.3 BCBC-5B-0 14131471 P217028 Rpl36al Enhancer P217028 Enhancer Unique Tile chr12:70100769-70101711 (+) NM_025589 - 900 70102611 66483 Rpl36al 2410038A03Rik|RPL36A ribosomal protein L36a-like MGI:1913733 Mm.322015; Mm.379115; Mm.423018; Mm.322015; Mm.379115; Mm.423018; Mm.322015; Mm.379115; Mm.423018; Mm.322015; Mm.379115; Mm.423018; Mm.322015; Mm.379115; Mm.423018; Mm.322015; Mm.379115; Mm.423018 12 12 C2 RPL36AL 6166 NM_146035 + 1106 70102817 217664 Mgat2 0 AGCCAGGGTTAATAAGCCATCTC TTCTGTAAGAAATGTGGCAAGCA 4 3 7 1.1.1.4.7.3 BCBC-5B-0 14131490 P217778 Col14a1 Enhancer P217778 Enhancer Unique Tile chr15:55140718-55141671 (+) NM_181277 + 2885 55137833 12818 Col14a1 5730412L22Rik|AW108078 procollagen, type XIV, alpha 1 MGI:1341272 Mm.297859 15 15 D COL14A1 7373 0 CCACCCTAGTGAGGCCTCTTAAT CCAAGCACATCCTCTCTCATTCT 4 3 8 1.1.1.4.8.3 BCBC-5B-0 14131509 P218818 Adam25 Enhancer P218818 Enhancer Unique Tile chr8:42246769-42247753 (+) NM_011781 + 3271 42251024 23793 Adam25 4930529F22Rik a disintegrin and metallopeptidase domain 25 (testase 2) MGI:1345157 Mm.425525 8 8 A4 NM_001009548 + 45918 42293671 384806 LOC384806 0 AGGCAAACCATGTAGACTGGGTA TAGAGATGTCCACCAGAGCTTCC 4 3 9 1.1.1.4.9.3 BCBC-5B-0 14131528 P219658 Trpc7 Enhancer P219658 Enhancer Unique Tile chr13:56900323-56901258 (-) NM_012035 - 3952 56905210 26946 Trpc7 TRP7|Trrp8 transient receptor potential cation channel, subfamily C, member 7 MGI:1349470 Mm.62409 13 13 B2 TRPC7 57113 0 TAAAAAGGCCATCATCAGAAGGA TTAGTCATCACAGCTCAAACCCA 4 3 10 1.1.1.4.10.3 BCBC-5B-0 14131547 P220408 1700029I08Rik ProximalPromoter P220408 ProximalPromoter Unique Tile chr17:33034424-33035325 (+) NM_183282 + 18 33035343 69481 1700029I08Rik AV259599 RIKEN cDNA 1700029I08 gene MGI:1916731 Mm.154333 17 17 B1 NM_009542 - 30999 33003425 22643 Zfp101 0 GACCCTACCTTCCTTTGCAAGTT TGGCCAGAAAAAGACAGGATAAA 4 3 11 1.1.1.4.11.3 BCBC-5B-0 14131566 P221530 BC056349 ProximalPromoter P221530 ProximalPromoter Unique Tile chr1:180700573-180701634 (+) NM_177757 + 15 180701649 269152 BC056349 4832420M10 cDNA sequence BC056349 MGI:3607707 Mm.138659 1 1 H4 KIF26B 55083 0 AGGGACAGTCACATACCGGACTA AGTCAGGGGATCATACAAGGTGA 4 3 12 1.1.1.4.12.3 BCBC-5B-0 14131585 P222280 Mep1a Enhancer P222280 Enhancer Unique Tile chr17:42968329-42969259 (-) NM_008585 - 1173 42967156 17287 Mep1a AI098089|AW107200|Mep-1|Mep-1a|Mep1 meprin 1 alpha MGI:96963 Mm.5346 17 17 C1-D1|17 30.4 cM MEP1A 4224 0 GCTCTGCATATGTTTGAGCTCCT TAGACCAAAGTTTTACCTGCCCC 4 3 13 1.1.1.4.13.3 BCBC-5B-0 14131604 P223120 9130227C08Rik Enhancer P223120 Enhancer Unique Tile chr14:54841115-54842164 (-) NM_027143 + 2063 54839052 219094 9130227C08Rik 6330555F21|AI605259|mKIAA0323 RIKEN cDNA 9130227C08Rik gene MGI:2451333 Mm.37592; Mm.387102; Mm.37592; Mm.387102; Mm.37592; Mm.387102; Mm.37592; Mm.387102; Mm.37592; Mm.387102; Mm.37592; Mm.387102; Mm.37592; Mm.387102; Mm.37592; Mm.387102; Mm.37592; Mm.387102; Mm.37592; Mm.387102; Mm.37592; Mm.387102; Mm.37592; Mm.387102; Mm.37592; Mm.387102; Mm.37592; Mm.387102 14 14 C1 NM_019820 - 2788 54838327 56410 Cbln3 0 GGAGCATCTCTGTCCTACTCCAA GAGAAGGAGGAAAGGAAACAGGA 4 3 14 1.1.1.4.14.3 BCBC-5B-0 14131623 P224242 Fap Enhancer P224242 Enhancer Unique Tile chr2:62373623-62374696 (-) NM_007986 - 57 62374753 14089 Fap - fibroblast activation protein MGI:109608 Mm.41816 2 2 C1.3|2 36.0 cM FAP 2191 0 GGAAAAATGAAGGTTAGTGCGTG CTCAGTCAAGTGACATTGTTGCC 4 3 15 1.1.1.4.15.3 BCBC-5B-0 14131642 P224992 Cables2 ProximalPromoter P224992 ProximalPromoter Unique Tile chr12:88868193-88869172 (-) NM_145851 - 68 88868125 252966 Cables2 ik3-2 Cdk5 and Abl enzyme substrate 2 MGI:2182335 Mm.386884 2 2 H4 CABLES2 81928 NM_028105 + 4883 88874055 72113 Adck1 0 ACATATGCTGCCTTCCCATTAGA TTGCCTCAAGGAATGGCTAATAA 4 3 16 1.1.1.4.16.3 BCBC-5B-0 14131661 P227660 Pdx1 P227660 Pdx1 Unique Tile chr7:48911134-48912098 (+) 0 GGTGGAACATACACGGAGTAAGC ATATCCCTCGAATGTCCCAAACT 4 3 17 1.1.1.4.17.3 BCBC-5B-0 14131680 P227156 Pdx1 P227156 Pdx1 Unique Tile chr14:77324814-77325745 (+) 0 AAGCAGCCAGTGCTCTTAAAGG CTGTTTGGGTTCACCTTTCATTC 4 3 18 1.1.1.4.18.3 BCBC-5B-0 14131699 P227330 Pdx1 P227330 Pdx1 Unique Tile chr16:98002661-98003601 (+) 0 CCTCCCCAAACTTCCTCATTAGT TACCAGGCATCAAGTGTTCTTCA 4 3 19 1.1.1.4.19.3 BCBC-5B-0 14131718 P003159 Blank P003159 Buffer Control Negative Blank 4 3 20 1.1.1.4.20.3 BCBC-5B-0 14131358 P211298 PufferfishHuman P211298 PufferfishHuman Unique Tile chr2:44127135-44128044 (+) 0 ATTAGAGAGCTGTAATGCCACCG AAAGGCTCTTCTCCTAAAGCCAA 4 4 1 1.1.1.4.1.4 BCBC-5B-0 14131377 P212420 miRNA P212420 miRNA Unique Tile chr3:157479334-157480251 (-) mmu-mir-186 0 TTGATTGAGAGACAAAGCAGACG CCCATTCTAACATTTGAAGGCAG 4 4 2 1.1.1.4.2.4 BCBC-5B-0 14131396 P213170 Klk1b5 Enhancer P213170 Enhancer Unique Tile chr7:44086240-44087302 (+) NM_008456 + 1718 44084522 16622 Klk1b5 Klk5|mGK-5 kallikrein 1-related peptidase b5 MGI:892020 Mm.142722 7 7 B3|7 23.01 cM NM_010639 + 6176 44093478 16612 Klk1 0 TCTCTCTTTCTGGTTGCCTTGAC AACAGAAGACAAAGGAAGAGGGG 4 4 3 1.1.1.4.3.4 BCBC-5B-0 14131415 P214292 Dmtf1 Enhancer P214292 Enhancer Unique Tile chr5:9166726-9167628 (-) NM_011806 - 94 9167722 23857 Dmtf1 Dimp|Dmp1 cyclin D binding myb-like transcription factor 1 MGI:1344415 Mm.22480 5 - DMTF1 9988 2 AAACAGGAAGTAAGTGCGATGGA TTGTCCCAAAGGAAGTCTAGCTG 4 4 4 1.1.1.4.4.4 BCBC-5B-0 14131434 P215132 Pdcd11 Enhancer P215132 Enhancer Unique Tile chr19:47147831-47148797 (-) NM_011053 + 3742 47144089 18572 Pdcd11 1110021I22Rik|ALG-4|Pdcd7|mKIAA0185 programmed cell death protein 11 MGI:1341788 Mm.41166 19 19 D2 PDCD11 22984 NM_023211 - 3826 47144005 66477 Usmg5 0 ATGTCCTCAGGCACACGTATTTT GTAGCCCTTGGCTAGTCTGGAAT 4 4 5 1.1.1.4.5.4 BCBC-5B-0 14131453 P215882 Mrpl12 Enhancer P215882 Enhancer Unique Tile chr11:120295890-120296847 (+) NM_027204 + 3911 120300758 56282 Mrpl12 0610034O11Rik|1500031N16Rik|MRP-L12|Rpml12 mitochondrial ribosomal protein L12 MGI:1926273 Mm.133851 11 11 E2 MRPL12 6182 NM_013770 + 11114 120307961 27376 Slc25a10 1 AGTACCTGGAGGTGCAGAGACAG GCAGTCCTGAGGTGCTTTCTAAG 4 4 6 1.1.1.4.6.4 BCBC-5B-0 14131472 P217004 Kbtbd2 Enhancer P217004 Enhancer Unique Tile chr6:56712854-56713835 (-) NM_145958 - 2967 56709887 210973 Kbtbd2 BC022962|Bklhd1|MGC36672|mKIAA1489 kelch repeat and BTB (POZ) domain containing 2 MGI:2384811 Mm.57295 6 6 B3 KBTBD2 25948 NM_012056 + 47801 56761636 27055 Fkbp9 0 ACTGGCCACTTTGTAGCTGAGTC AGTCAGTTCTGTCCTTCCCACAG 4 4 7 1.1.1.4.7.4 BCBC-5B-0 14131491 P217754 Hadha Enhancer P217754 Enhancer Unique Tile chr5:30482500-30483437 (-) NM_178878 - 2304 30485741 97212 Hadha C77020|Mtpa hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit MGI:2135593 Mm.200497 5 5 B1 HADHA 3030 NM_145558 + 2671 30486108 231086 Hadhb 0 TCTGTCCTTGACCCTGAGAGTGT TCTTAATGGAATGCCCAATTCAC 4 4 8 1.1.1.4.8.4 BCBC-5B-0 14131510 P218512 Cldn18 Enhancer P218512 Enhancer Unique Tile chr9:99520415-99521398 (-) NM_019815 - 1048 99519367 56492 Cldn18 - claudin 18 MGI:1929209 Mm.386784 9 - CLDN18 51208 0 TGTTTTCATTGCTCTCTGGATCA ACAATTGTCAATGCTATCGGCTT 4 4 9 1.1.1.4.9.4 BCBC-5B-0 14131529 P219634 Rpa3 Enhancer P219634 Enhancer Unique Tile chr6:8206123-8207140 (-) NM_026632 - 1966 8209106 68240 Rpa3 14kDa|C330026P08Rik replication protein A3 MGI:1915490 Mm.29073 6 6 A1 RPA3 6119 NM_133236;NM_178072; + 2309 8209449 170772 Glcci1 0 CCACAGTTCTTCTCGGTGAGTTT CTTCAGTGTAGCTTCCTGGCAAT 4 4 10 1.1.1.4.10.4 BCBC-5B-0 14131548 P220384 Wfikkn2 ProximalPromoter P220384 ProximalPromoter Unique Tile chr11:94062035-94063013 (-) NM_181819 - 3396 94058639 278507 Wfikkn2 2610304F08Rik|AY100450|Gasp1|MGC130508|WFIKKNRP WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 MGI:2669209 Mm.342216 11 11 C WFIKKN2 124857 NM_009427 + 34492 94027543 22057 Tob1 0 CAAATCTGGAGGAATCAGGACAC TGGGTGGGGATTGAGACTAACTA 4 4 11 1.1.1.4.11.4 BCBC-5B-0 14131567 P221506 Sirpb1 ProximalPromoter P221506 ProximalPromoter Inter Repeats Tile chr3:16040555-16041498 (-) NM_198405;NM_178792;NM_001002898; - 83 16040638 320832 Sirpb1 9930027N05Rik|SIRP-beta|Sirpb signal-regulatory protein beta 1 MGI:2444824 Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126; Mm.330924; Mm.423523; Mm.425126 3 3 A1 SIRPB1 10326 0 ATGACTGAATACCCTGCCAAAGA GGAGAAGCATGGTTGGTGTTAAG 4 4 12 1.1.1.4.12.4 BCBC-5B-0 14131586 P222346 E130303B06Rik ProximalPromoter P222346 ProximalPromoter Unique Tile chr8:108597424-108598375 (-) NM_198299 - 127 108597297 102124 E130303B06Rik AI606951 RIKEN cDNA E130303B06 gene MGI:2142593 Mm.276087 8 8 D3 C16orf48 84080 NM_019695 + 6613 108590811 56513 Pard6a 0 CTTAGACAGTGAAGCTCCAAGCC CTAAGTCTCGGGTCTCAACAGGA 4 4 13 1.1.1.4.13.4 BCBC-5B-0 14131605 P223096 Spink2 ProximalPromoter P223096 ProximalPromoter Unique Tile chr5:78286271-78287414 (-) NM_183284 - 43 78286228 69982 Spink2 1700007F22Rik|AV038945|HUSI-II|MGC107139 serine peptidase inhibitor, Kazal type 2 MGI:1917232 Mm.46106 5 5 D SPINK2 6691 0 TTGATGTGTGGAGAAGTGAAGGA CTAGAGGCTAGTCCGAAGAAGGG 4 4 14 1.1.1.4.14.4 BCBC-5B-0 14131624 P224218 Ddx6 ProximalPromoter P224218 ProximalPromoter Unique Tile chr9:44377548-44378536 (+) NM_181324;NM_007841; + 20361 44358175 13209 Ddx6 E230023J21Rik|HLR2|mRCK/P54|p54|rck DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 MGI:104976 Mm.267061 9 9 B|9 26.0 cM DDX6 1656 NM_021481 + 45696 44424232 58866 Treh 0 CCAAGCCAAGTTCGTTTTATGTC GGCTTCTCCTGGCTATAACCCTA 4 4 15 1.1.1.4.15.4 BCBC-5B-0 14131643 P224968 9830163H01Rik ProximalPromoter P224968 ProximalPromoter Unique Tile chr9:51825191-51826241 (+) NM_001001500 + 2 51826243 414109 9830163H01Rik - RIKEN cDNA 9830163H01 gene MGI:3041213 Mm.245746 9 9 A5.3 NM_009041 + 24500 51800691 19684 Rdx 0 CAAAGAATTCCCTTGAGTTGTGG GCCAGCCTGAGCTATAGTGAAAA 4 4 16 1.1.1.4.16.4 BCBC-5B-0 14131662 P225808 Olfr699 ProximalPromoter P225808 ProximalPromoter Unique Tile chr7:106584559-106585477 (-) NM_001011862 - 89 106584648 258180 Olfr699 MOR283-10P olfactory receptor 699 MGI:3030533 Mm.377371 7 7 E3 NM_146600 - 14632 106600109 258593 Olfr700 0 GAGAATGTGGGGCATTGAAATAG TACAGCACAGAGCAGATCAGGAG 4 4 17 1.1.1.4.17.4 BCBC-5B-0 14131681 P227132 Rod1 Pdx1 P227132 Pdx1 Unique Tile chr4:59627057-59627987 (+) NM_144904;NM_178164; - 15336 59643323 230257 Rod1 5830471K22Rik|AA407443|AI462022|AW107884|C86549|MGC11742 ROD1 regulator of differentiation 1 (S. pombe) MGI:1923334 Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581; Mm.331640; Mm.389581 4 4 B3 ROD1 9991 NM_024255 + 47756 59675743 72479 Hsdl2 0 CTGCTGACCAGTGGAAGTCAATA TTCCTCGTTTCCTCCTTTCTTCT 4 4 18 1.1.1.4.18.4 BCBC-5B-0 14131700 P227306 Pdx1 P227306 Pdx1 Unique Tile chr7:72105161-72106099 (+) 0 TCAACTAGGCAGGTTCTGAAAGG CTTTTGACCCTTACCTCCCACTC 4 4 19 1.1.1.4.19.4 BCBC-5B-0 14131719 P003159 Blank P003159 Buffer Control Negative Blank 4 4 20 1.1.1.4.20.4 BCBC-5B-0 14131359 P211274 Helt PufferfishHuman P211274 PufferfishHuman Unique Tile chr8:47756507-47757537 (-) NM_173789 - 35836 47793373 234219 Helt A830086M02|Hesl|Mgn Hey-like transcription factor (zebrafish) MGI:3040955 Mm.145631 8 8 B1.1 HELT 391723 NM_007450 - 46660 47709847 11739 Slc25a4 0 CGTGTTGCCAAAGGAAATAAGAC CAAATGGCAAACCATTTTCTCTC 4 5 1 1.1.1.4.1.5 BCBC-5B-0 14131378 P212396 miRNA P212396 miRNA Unique Tile chr3:69097543-69098496 (+) mmu-mir-15b 0 GAAGCCATGGCATTGACTTAGAC CACAGCTGCTCTGCATAACAATC 4 5 2 1.1.1.4.2.5 BCBC-5B-0 14131397 P213146 Il2rb Enhancer P213146 Enhancer Unique Tile chr15:78321024-78322078 (-) NM_008368 - 13 78321011 16185 Il2rb CD122|IL-15Rbeta|IL15Rbeta|Il-2/15Rbeta|Il-2Rbeta|MGC118674|p70 interleukin 2 receptor, beta chain MGI:96550 Mm.35287 15 15 E|15 43.3 cM IL2RB 3560 NM_027902 - 25158 78295866 71753 Tmprss6 0 CTGGGCTTTGATGATTAACCTTG ACTGGGTCACCTGATTTCCAGTA 4 5 3 1.1.1.4.3.5 BCBC-5B-0 14131416 P213986 Msc Enhancer P213986 Enhancer Unique Tile chr1:14742447-14743375 (-) NM_010827 - 1267 14741180 17681 Msc MyoR musculin MGI:1333884 Mm.5820 1 1 A3|1 5.0 cM MSC 9242 0 CTGCAGCTGCTCACTACTATGGA ACAGCAGAACAAATAGCTGAGCC 4 5 4 1.1.1.4.4.5 BCBC-5B-0 14131435 P215108 Eno1 Enhancer P215108 Enhancer Unique Tile chr4:149081128-149082166 (+) NM_023119 + 62 149081066 13806 Eno1 0610008I15|AL022784|Eno-1|MBP-1|MGC103111|MGC107267 enolase 1, alpha non-neuron MGI:95393 Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666; Mm.372357; Mm.372389; Mm.70666 4 4 E2 ENO1 2023 NM_001025388 + 1103 149083269 433182 LOC433182 0 ATCCTACTGCCAGGTATGGTCCT ACCAGAACTCAGTGATCCTCCAG 4 5 5 1.1.1.4.5.5 BCBC-5B-0 14131454 P215858 Polr2d Enhancer P215858 Enhancer Unique Tile chr18:31927394-31928382 (+) NM_027101;NM_027002; + 3786 31932168 69241 Polr2d 2310002G05Rik|2610028L19Rik|HSRBP4|RBP4 polymerase (RNA) II (DNA directed) polypeptide D MGI:1916491 Mm.279898 18 18 B2 POLR2D 5433 NM_153515 + 23309 31904085 225339 E230022H04Rik 0 ACCTTTTCACCTTGCAACACAAT CATTTTCCCACAATCCCACTTTA 4 5 6 1.1.1.4.6.5 BCBC-5B-0 14131473 P216980 Pcmt1 Enhancer P216980 Enhancer Unique Tile chr10:7352881-7353841 (+) NM_008786 - 378 7353463 18537 Pcmt1 C79501|PIMT protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 MGI:97502 Mm.258431; Mm.401651; Mm.258431; Mm.401651; Mm.258431; Mm.401651; Mm.258431; Mm.401651; Mm.258431; Mm.401651; Mm.258431; Mm.401651; Mm.258431; Mm.401651; Mm.258431; Mm.401651; Mm.258431; Mm.401651; Mm.258431; Mm.401651; Mm.258431; Mm.401651; Mm.258431; Mm.401651; Mm.258431; Mm.401651; Mm.258431; Mm.401651; Mm.258431; Mm.401651; Mm.258431; Mm.401651; Mm.258431; Mm.401651; Mm.258431; Mm.401651; Mm.258431; Mm.401651 10 10 A1|10 7.0 cM PCMT1 5110 NM_145706 + 3864 7357705 69912 Nup43 2 TGCTAGTCCAGTCACCAGAAACA CTAGACAGCCATAGGAGCAGACC 4 5 7 1.1.1.4.7.5 BCBC-5B-0 14131492 P217820 Inpp5a Enhancer P217820 Enhancer Unique Tile chr7:139241732-139242765 (+) NM_183144 + 1303 139240429 212111 Inpp5a - inositol polyphosphate-5-phosphatase A MGI:2686961 Mm.277096 7 7 F4 INPP5A 3632 0 CCTTGGGGGACTTTATATTCCTG AGGTAGAGCCATCTGCCTAGTCC 4 5 8 1.1.1.4.8.5 BCBC-5B-0 14131511 P218488 Gmpr Enhancer P218488 Enhancer Unique Tile chr13:45518655-45519651 (+) NM_025508 + 174 45518481 66355 Gmpr 2310004P21Rik|AV028449 guanosine monophosphate reductase MGI:1913605 Mm.290802 13 13 A5 GMPR 2766 0 ACTCGACTTCAAGGATGTTCTGC GTCTTGTTTGTTGAGCAAAAGGG 4 5 9 1.1.1.4.9.5 BCBC-5B-0 14131530 P219610 Hgd Enhancer P219610 Enhancer Unique Tile chr16:37503095-37504138 (+) NM_013547 + 3559 37499536 15233 Hgd aku homogentisate 1, 2-dioxygenase MGI:96078 Mm.157442 16 16 B3|16 27.3 cM HGD 3081 NM_001042499 + 43944 37459151 67657 Rabl3 0 TCCAGAACACCCAGTAAAAGGAA GAACAGAATTGTAGATCAGCGGC 4 5 10 1.1.1.4.10.5 BCBC-5B-0 14131549 P220360 Ela1 ProximalPromoter P220360 ProximalPromoter Unique Tile chr15:100515871-100516871 (-) NM_033612 - 57 100515928 109901 Ela1 1810009A17Rik|1810062B19Rik|Ela-1|PC-TsF elastase 1, pancreatic MGI:95314 Mm.2131 15 15 56.8 cM ELA1 1990 NM_172451 - 40539 100557410 207839 Galnt6 0 AACCTTTCCAGACCTGTTTCCTC CCAAATGATCCACTTACCACACA 4 5 11 1.1.1.4.11.5 BCBC-5B-0 14131568 P221200 Cutl2 Enhancer P221200 Enhancer Unique Tile chr5:122310011-122310958 (-) NM_007804 - 1569 122308442 13048 Cutl2 Cux-2|Cux2 cut-like 2 (Drosophila) MGI:107321 Mm.156172; Mm.332661; Mm.156172; Mm.332661; Mm.156172; Mm.332661; Mm.156172; Mm.332661; Mm.156172; Mm.332661 5 5 F|5 71.0 cM CUTL2 23316 1 GCTCACTTTGTTCTTTACGGTCC AAGCGAGGTAGAACCGGTAGC 4 5 12 1.1.1.4.12.5 BCBC-5B-0 14131587 P222322 Ptplad1 ProximalPromoter P222322 ProximalPromoter Unique Tile chr9:64819833-64820758 (-) NM_021345 - 126 64819707 57874 Ptplad1 4930523M17Rik|AW742319|B-ind1|Hspc121|MGC25483 protein tyrosine phosphatase-like A domain containing 1 MGI:1889341 Mm.308180 9 9 D PTPLAD1 51495 NM_028906 + 9705 64830463 74388 Dpp8 0 CCGTGTACTTTTTAGCCTGGATG CTTTTGAGCTCCTCGCTTACCTC 4 5 13 1.1.1.4.13.5 BCBC-5B-0 14131606 P223072 Rpl23a ProximalPromoter P223072 ProximalPromoter Unique Tile chr11:77999878-78000801 (-) NM_207523 - 124 77999754 268449 Rpl23a BC029892|MDA20|MGC107550|MGC107551|MGC36820 ribosomal protein L23a MGI:3040672 Mm.22723; Mm.304790; Mm.352675; Mm.22723; Mm.304790; Mm.352675; Mm.22723; Mm.304790; Mm.352675; Mm.22723; Mm.304790; Mm.352675; Mm.22723; Mm.304790; Mm.352675; Mm.22723; Mm.304790; Mm.352675; Mm.22723; Mm.304790; Mm.352675; Mm.22723; Mm.304790; Mm.352675; Mm.22723; Mm.304790; Mm.352675; Mm.22723; Mm.304790; Mm.352675; Mm.22723; Mm.304790; Mm.352675; Mm.22723; Mm.304790; Mm.352675; Mm.22723; Mm.304790; Mm.352675; Mm.22723; Mm.304790; Mm.352675; Mm.22723; Mm.304790; Mm.352675; Mm.22723; Mm.304790; Mm.352675; Mm.22723; Mm.304790; Mm.352675; Mm.22723; Mm.304790; Mm.352675 11 11 B5 RPL23A 6147 NM_033475 + 4227 78005028 19376 Rab34 2 AAAATGAGCTCCAGGACAGTCAG ATTCCCTAGAGTGGGAGACCAAG 4 5 14 1.1.1.4.14.5 BCBC-5B-0 14131625 P224194 Spn Enhancer P224194 Enhancer Unique Tile chr7:126931610-126932650 (-) NM_009259;NM_001037810; - 2645 126928965 20737 Spn A630014B01Rik|Cd43|Galgp|Ly-48|Ly48 sialophorin MGI:98384 Mm.283714 7 7 F3-F4|7 62.0 cM SPN 6693 NM_133686 - 18433 126913177 67375 Qprt 0 ATTCTATCCCTTCTTTCCTCCCC ATGCTCTTGGTTTTCTTTCCTCC 4 5 15 1.1.1.4.15.5 BCBC-5B-0 14131644 P225034 Olfr967 ProximalPromoter P225034 ProximalPromoter Unique Tile chr9:39499919-39500943 (+) NM_001011826 + 15 39500958 258086 Olfr967 MOR171-30P olfactory receptor 967 MGI:3030801 Mm.377345 9 9 A5.1 NM_146612 - 22426 39523369 258605 Olfr968 1 TTCTGGCATCTTTATCCAAGGAA CCTGTGGGAAAGGAAGAAAAAGT 4 5 16 1.1.1.4.16.5 BCBC-5B-0 14131663 P225784 Olfr663 ProximalPromoter P225784 ProximalPromoter Unique Tile chr7:104576537-104577455 (+) NM_001011757 + 66 104577389 257914 Olfr663 MOR40-12 olfactory receptor 663 MGI:3030497 Mm.377299 7 7 E3 NM_146748 + 14700 104561837 258743 Olfr661 0 GGTGTGTGGTACATGCCCTTAAT TCCCATGAGAATGAACTCAGACA 4 5 17 1.1.1.4.17.5 BCBC-5B-0 14131682 P227108 Smad7 Pdx1 P227108 Pdx1 Unique Tile chr18:75465498-75466427 (+) NM_008543 + 26466 75492893 17131 Smad7 Madh7 MAD homolog 7 (Drosophila) MGI:1100518 Mm.34407 18 - SMAD7 4092 0 AGAGCTGGTCAGTAACAGGGAAG GGAGCCGGAAGGTATTAGACACT 4 5 18 1.1.1.4.18.5 BCBC-5B-0 14131701 P227282 Tmem20 Pdx1 P227282 Pdx1 Unique Tile chr19:38438200-38439137 (+) NM_175507 + 21986 38461123 240660 Tmem20 AA590464|D330039I19Rik transmembrane protein 20 MGI:2444789 Mm.262085 19 19 C3 TMEM20 159371 0 AGAGGTCATCTGTGAGAGGTTGG CTGGGCTACACTGGGAGACTCTA 4 5 19 1.1.1.4.19.5 BCBC-5B-0 14131720 P003063 Blank P003063 Buffer Control Negative Blank 4 5 20 1.1.1.4.20.5 BCBC-5B-0 14131360 P211250 PufferfishHuman P211250 PufferfishHuman Unique Tile chr2:75225768-75226710 (-) 0 CTGAGATGCTGACAAGCACTGTT GACCGGCAGGGACTTAAACTAAT 4 6 1 1.1.1.4.1.6 BCBC-5B-0 14131379 P212372 miRNA P212372 miRNA Unique Tile chr11:96668373-96669292 (-) mmu-mir-152 1 AGTTCAATTTCCAGCAACCACAT AACTCAGTCTGTCGACCTGGAAC 4 6 2 1.1.1.4.2.6 BCBC-5B-0 14131398 P213212 Slc3a2 Enhancer P213212 Enhancer Unique Tile chr19:8777910-8778851 (-) NM_008577 - 2051 8780902 17254 Slc3a2 4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 MGI:96955 Mm.4114 19 19 A|19 0.0 cM SLC3A2 6520 NM_134139 + 24032 8802883 107071 Wdr74 0 GATGTTGGTGCTGTGTGGATTTA CAAGGTAAAGGCAGACCAGAGAA 4 6 3 1.1.1.4.3.6 BCBC-5B-0 14131417 P213962 Smad2 Enhancer P213962 Enhancer Unique Tile chr18:76370816-76371758 (+) NM_010754 + 3527 76367289 17126 Smad2 Madh2|Madr2 MAD homolog 2 (Drosophila) MGI:108051 Mm.391091 18 18 E3|18 48.0 cM SMAD2 4087 0 GTTCTTGCCCTTTGGTTAGCTTT AAGGCCATGCTGGTTTACATAGA 4 6 4 1.1.1.4.4.6 BCBC-5B-0 14131436 P215084 Nisch Enhancer P215084 Enhancer Unique Tile chr14:30023899-30024881 (-) NM_022656 - 3340 30020559 64652 Nisch 1200007D05Rik|3202002H23Rik|AW494485|I-1 nischarin MGI:1928323 Mm.298728 14 14 B NISCH 11188 NM_009393 + 12439 30037320 21924 Tnnc1 0 CACACTGACACATGGTCCTCTTC ACTTCATCCCTCGGTGTACAGAA 4 6 5 1.1.1.4.5.6 BCBC-5B-0 14131455 P215834 Atpbd1c Enhancer P215834 Enhancer Unique Tile chr5:122634060-122635095 (-) NM_024216 + 936 122633124 68080 Atpbd1c A930018B01Rik|D5Ertd708e ATP binding domain 1 family, member C MGI:1289326 Mm.266328 5 5 F|5 65.0 cM ATPBD1C 51184 NM_026883 - 1088 122632972 68948 1500011H22Rik 1 TTTTTCGAGACAGGGTTTCTCTG AGTAGAAACGGCAATGGTGACAT 4 6 6 1.1.1.4.6.6 BCBC-5B-0 14131474 P216674 Drap1 Enhancer P216674 Enhancer Unique Tile chr19:5422838-5423858 (+) NM_024176 - 1058 5424916 66556 Drap1 2310074H19Rik Dr1 associated protein 1 (negative cofactor 2 alpha) MGI:1913806 Mm.275446 19 19 A DRAP1 10589 NM_134149 + 1298 5425156 107242 AI837181 1 AACAATCCCACCTTTCTCCTCTC CTTCTTGAAAGACTTGGTGGCAT 4 6 7 1.1.1.4.7.6 BCBC-5B-0 14131493 P217796 Enhancer P217796 Enhancer No Hits Tile 1 aaagataagattaacccgtgggg tggaacctccaaatgaaagactc 4 6 8 1.1.1.4.8.6 BCBC-5B-0 14131512 P218464 Olfr76 ProximalPromoter P218464 ProximalPromoter Unique Tile chr19:12187660-12188711 (-) NM_146682 - 59 12187719 258677 Olfr76 MOR215-3|V5 olfactory receptor 76 MGI:2153205 Mm.261576 19 - OR5A1 219982 NM_146678 - 11071 12176589 258673 Olfr1428 0 ATGGGTAGTCAGCCACATCTTGT GAATCCCAAGAAGATGAACATGG 4 6 9 1.1.1.4.9.6 BCBC-5B-0 14131531 P219586 Ear6 ProximalPromoter P219586 ProximalPromoter Unique Tile chr14:50774636-50775550 (+) NM_053111 + 168 50775718 93719 Ear6 - eosinophil-associated, ribonuclease A family, member 6 MGI:1890463 Mm.221324 14 14 C1 NM_001029990 + 31242 50806792 52535 Mett11d1 0 TAGATTGTAAAAGGCCCCAGGTT GAAGAAATTCCAAGCCCTCTTGT 4 6 10 1.1.1.4.10.6 BCBC-5B-0 14131550 P220426 9130401M01Rik Enhancer P220426 Enhancer Unique Tile chr15:57863147-57864064 (-) NM_029418 - 235 57864299 75758 9130401M01Rik AI849328 RIKEN cDNA 9130401M01 gene MGI:1923008 Mm.348018 15 15 D1 C8orf76 84933 NM_009572;NM_001042438; - 35374 57899438 22770 Zhx1 0 ACTCTTGTACCCTCGGGTTGTCT CGGTTTCAACCACAGTGAAGTTA 4 6 11 1.1.1.4.11.6 BCBC-5B-0 14131569 P221176 Osgepl1 Enhancer P221176 Enhancer Unique Tile chr1:53261420-53262456 (+) NM_028091 + 3213 53258207 72085 Osgepl1 2610001M19Rik|AA416452|MGC13061 O-sialoglycoprotein endopeptidase-like 1 MGI:1919335 Mm.378377 1 1 C1.1|1 0.0 cM OSGEPL1 64172 NM_145517 + 19736 53241684 227102 Ormdl1 0 CTGCAGGTTGTTTTCTTACCACC CCCACCTGTTCTGAAACAAAAAG 4 6 12 1.1.1.4.12.6 BCBC-5B-0 14131588 P222298 Npal2 ProximalPromoter P222298 ProximalPromoter Unique Tile chr15:34623468-34624507 (-) NM_145469 - 7 34623461 223473 Npal2 9330161F08Rik|Nipal2 NIPA-like domain containing 2 MGI:1924488 Mm.258402 15 15 B3.1 NPAL2 79815 0 GGGTATGGTGCTTGCTTAACATC GGAATGACATCATCTCTTTTGCC 4 6 13 1.1.1.4.13.6 BCBC-5B-0 14131607 P223048 Edf1 Enhancer P223048 Enhancer Unique Tile chr2:25375489-25376436 (+) NM_021519 + 3472 25379908 59022 Edf1 0610008L11Rik|AA409425 endothelial differentiation-related factor 1 MGI:1891227 Mm.29945 2 2 A3 EDF1 8721 NM_009422 - 6586 25368903 22030 Traf2 2 GGCTGTTCTGGAACTCACTCTGT TGAAGAAGAAGCTGATTCCCATC 4 6 14 1.1.1.4.14.6 BCBC-5B-0 14131626 P223888 Iars2 ProximalPromoter P223888 ProximalPromoter Unique Tile chr1:187030300-187031200 (-) NM_198653 - 111 187030189 381314 Iars2 2010002H18Rik|C79125|MGC63429 isoleucine-tRNA synthetase 2, mitochondrial MGI:1919586 Mm.275841; Mm.331142; Mm.275841; Mm.331142; Mm.275841; Mm.331142; Mm.275841; Mm.331142; Mm.275841; Mm.331142; Mm.275841; Mm.331142; Mm.275841; Mm.331142; Mm.275841; Mm.331142; Mm.275841; Mm.331142; Mm.275841; Mm.331142; Mm.275841; Mm.331142; Mm.275841; Mm.331142; Mm.275841; Mm.331142; Mm.275841; Mm.331142; Mm.275841; Mm.331142; Mm.275841; Mm.331142; Mm.275841; Mm.331142; Mm.275841; Mm.331142; Mm.275841; Mm.331142 1 1 H5 IARS2 55699 NM_011794 + 1746 187032946 23827 Bpnt1 0 GGTTTCCCAGAAAACAGCCTAGT GGCTTTCCCCAATCAGATACATT 4 6 15 1.1.1.4.15.6 BCBC-5B-0 14131645 P225010 Taar3 ProximalPromoter P225010 ProximalPromoter Unique Tile chr10:23637930-23638961 (+) NM_001008429 + 12 23638973 493809 Taar3 - trace amine-associated receptor 3 MGI:3527427 Mm.379737 10 10 A4 NM_001007266 + 9943 23627987 209512 Taar2 0 AGGCGAAGGAAATTAGAGAATGC TTCAAGTTCCTTTCCAGGATGAA 4 6 16 1.1.1.4.16.6 BCBC-5B-0 14131664 P225760 Mxi1 ProximalPromoter P225760 ProximalPromoter Unique Tile chr19:53382893-53383816 (+) NM_001008543;NM_001008542;NM_010847; + 59 53383757 17859 Mxi1 Mad2 Max interacting protein 1 MGI:97245 Mm.2154 19 19 D|19 49.5 cM MXI1 4601 1 GGAGTCGTCGTGGGACTGTAG TTAGGCTCTTCACGCTCCAATAC 4 6 17 1.1.1.4.17.6 BCBC-5B-0 14131683 P227084 Pdx1 P227084 Pdx1 Unique Tile chr13:32187764-32188692 (+) 0 GCCTGCTTCAGTGTTCTTTCAGT GCAATCTCAGGGGTATTTCTGTG 4 6 18 1.1.1.4.18.6 BCBC-5B-0 14131702 P227348 Pdx1 P227348 Pdx1 Unique Tile chr1:170199427-170200368 (+) 0 GAATAATTGCCCAGTACCCAGTG TCGTTTTCAGGAAGAGGTCTGAG 4 6 19 1.1.1.4.19.6 BCBC-5B-0 14131721 P003063 Blank P003063 Buffer Control Negative Blank 4 6 20 1.1.1.4.20.6 BCBC-5B-0 14131361 P211226 Phox2b PufferfishHuman P211226 PufferfishHuman Unique Tile chr5:67377120-67378140 (-) NM_008888 - 121 67378261 18935 Phox2b Dilp1|NBPhox|Pmx2b paired-like homeobox 2b MGI:1100882 Mm.62505 5 5 C3.1|5 40.0 cM PHOX2B 8929 0 ACCGTCTCCACATCCATCTTTTA AGAAGGAGGTTTTAGTTACGGCG 4 7 1 1.1.1.4.1.7 BCBC-5B-0 14131380 P212066 ChickenHuman P212066 ChickenHuman Unique Tile chr5:27643669-27644713 (+) 0 CAGTGTCTGTAACATCCCTGCTG TTCTTTGACTCCCAGAGGTTCAG 4 7 2 1.1.1.4.2.7 BCBC-5B-0 14131399 P213188 Lrp5 Enhancer P213188 Enhancer Unique Tile chr19:3685436-3686386 (-) NM_008513 - 160 3686546 16973 Lrp5 BMND1|HBM|KIAA4142|LR3|LRP7|OPPG|mKIAA4142 low density lipoprotein receptor-related protein 5 MGI:1278315 Mm.274581 19 19 B LRP5 4041 NM_028077 + 21946 3708332 72056 1810055G02Rik 1 GGTGCTGTACTGCAGCTTGGT CTTAATAAGGCCCAGACAAAGGG 4 7 3 1.1.1.4.3.7 BCBC-5B-0 14131418 P213938 Klf12 Enhancer P213938 Enhancer Unique Tile chr14:99029568-99030613 (-) NM_010636 - 2317 99032930 16597 Klf12 2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik Kruppel-like factor 12 MGI:1333796 Mm.201493; Mm.396499; Mm.201493; Mm.396499; Mm.201493; Mm.396499; Mm.201493; Mm.396499; Mm.201493; Mm.396499; Mm.201493; Mm.396499; Mm.201493; Mm.396499; Mm.201493; Mm.396499 14 - KLF12 11278 0 GTGGATAGAGAGCATGTTGGCTC AGATTCAGGGGCCTAGTTCATTC 4 7 4 1.1.1.4.4.7 BCBC-5B-0 14131437 P215060 Gtf2h2 Enhancer P215060 Enhancer Unique Tile chr13:101588329-101589405 (-) NM_022011 - 3190 101592595 23894 Gtf2h2 44kDa|Btf2p44|p44 general transcription factor II H, polypeptide 2 MGI:1345669 Mm.272533 13 13 D1|13 55.9 cM GTF2H2 2966 NM_008670 - 41561 101546768 17940 Birc1a 0 CCGACTTGGAATGGTATGTTAGG AGCATAAGAAAAAGTGAGGCGTG 4 7 5 1.1.1.4.5.7 BCBC-5B-0 14131456 P215900 Ace2 Enhancer P215900 Enhancer Unique Tile chrX:159484930-159485993 (+) NM_027286 + 194 159484736 70008 Ace2 2010305L05Rik angiotensin I converting enzyme (peptidyl-dipeptidase A) 2 MGI:1917258 Mm.13451 X X F5|X 70.5 cM ACE2 59272 0 CTGAAGAAAATGCCCAAAAGATG AGTCTCACCTTGAACCATTCAGC 4 7 6 1.1.1.4.6.7 BCBC-5B-0 14131475 P216650 Rnf44 Enhancer P216650 Enhancer Unique Tile chr13:54701839-54702756 (-) NM_134064 - 702 54703458 105239 Rnf44 AI854545|mKIAA1100 ring finger protein 44 MGI:2145310 Mm.25366 13 13 B1 RNF44 22838 NM_001033364 + 8328 54711084 268663 BC040758 1 TACACACAAGGTTCACACATCCC GCAGAGGGCCTAGTAAGTGGTTT 4 7 7 1.1.1.4.7.7 BCBC-5B-0 14131494 P217772 Reep4 Enhancer P217772 Enhancer Unique Tile chr14:69280982-69282030 (+) NM_180588 + 280 69280702 72549 Reep4 2700029E10Rik receptor accessory protein 4 MGI:1919799 Mm.46742 14 14 D2 REEP4 80346 NM_021877 + 7105 69289135 15460 Hr 0 ACCTGGTCACTGCATACCTTGTT CCAATACATCATCCACCGTACCT 4 7 8 1.1.1.4.8.7 BCBC-5B-0 14131513 P218440 Pcdh8 Enhancer P218440 Enhancer Unique Tile chr14:78507897-78508907 (-) NM_021543 - 2442 78505455 18530 Pcdh8 1700080P15Rik|Papc protocadherin 8 MGI:1306800 Mm.390715 14 14 D3|14 43.0 cM PCDH8 5100 1 CAAAAGGCAGTTTCGTCTGTTCT GGTTTGAAGACTATTGTCCACCG 4 7 9 1.1.1.4.9.7 BCBC-5B-0 14131532 P219280 Chrne ProximalPromoter P219280 ProximalPromoter Unique Tile chr11:70435319-70436351 (-) NM_009603 - 70 70435389 11448 Chrne Acre cholinergic receptor, nicotinic, epsilon polypeptide MGI:87894 Mm.4980 11 11 B3|11 42.0 cM CHRNE 1145 NM_010326 + 18965 70455316 14723 Gp1ba 0 GACCTAGCGAGCTTTTTAGGAGC CCCTACCAAAGAGTGTCAGGAGA 4 7 10 1.1.1.4.10.7 BCBC-5B-0 14131551 P220402 Olfr1208 ProximalPromoter P220402 ProximalPromoter Unique Tile chr2:88698417-88699350 (-) NM_146778 - 17 88698434 258774 Olfr1208 MOR225-4 olfactory receptor 1208 MGI:3031042 Mm.377685 2 - NM_146461 - 11880 88711230 258453 Olfr1209 0 CTGCCCAGCTTCACTGTTCTAAT AAGGTTTCCATATCCCATTGCTT 4 7 11 1.1.1.4.11.7 BCBC-5B-0 14131570 P221152 Olfr308 ProximalPromoter P221152 ProximalPromoter Unique Tile chr7:86197657-86198593 (-) NM_146621 - 54 86197711 258614 Olfr308 MOR104-1 olfactory receptor 308 MGI:3030142 Mm.271467 7 - NM_146617 - 13562 86212155 258610 Olfr307 0 ATGAATTCCCTGGCTGGAACTAT CAGGGAAGCCTAAGAGAAGGAAG 4 7 12 1.1.1.4.12.7 BCBC-5B-0 14131589 P222274 Rgs20 Enhancer P222274 Enhancer End Repeat Tile chr1:5012645-5013544 (-) NM_021374 - 3138 5009507 58175 Rgs20 2900073E09Rik|MGC151302|MGC151306|Rgsz1 regulator of G-protein signaling 20 MGI:1929866 Mm.103771 1 1 A1 RGS20 8601 0 CACACACACACACACACACACAC ATTAAGGTTTCCACTCTGGCCTC 4 7 13 1.1.1.4.13.7 BCBC-5B-0 14131608 P223114 Prmt5 ProximalPromoter P223114 ProximalPromoter Unique Tile chr14:53471656-53472622 (-) NM_013768 - 44 53471612 27374 Prmt5 Jbp1|Skb1 protein arginine N-methyltransferase 5 MGI:1351645 Mm.196585 14 - PRMT5 10419 NM_145462 - 35919 53508541 219072 D14Ertd500e 0 GAGTCATTTGGGAAGAGGGAACT AACAACCAGAGCGTCTTTACAGC 4 7 14 1.1.1.4.14.7 BCBC-5B-0 14131627 P223864 Igfbpl1 Enhancer P223864 Enhancer Unique Tile chr4:45843756-45844753 (-) NM_018741 - 3144 45847897 75426 Igfbpl1 2810011G06Rik|2810453O06Rik|IGFBPL insulin-like growth factor binding protein-like 1 MGI:1933198 Mm.3919 4 4 B2 IGFBPL1 347252 NM_028270 + 23539 45820217 72535 Aldh1b1 0 ATAGAAGGGAACATTGAGGCACA CAAGTGCTAGGATTAAAGGCGTG 4 7 15 1.1.1.4.15.7 BCBC-5B-0 14131646 P224986 9230002F21Rik ProximalPromoter P224986 ProximalPromoter Unique Tile chr2:152181579-152182628 (-) NM_001002791 - 0 152181579 442835 9230002F21Rik Defb22 RIKEN cDNA 9230002F21 gene MGI:3045368 Mm.99065 2 2 G3 NM_176950 + 13076 152168503 319579 9230107O10Rik 0 CACATTGCCTTGTTAAATGTGGA TATGGAGTCCAAGACTCTCAGGC 4 7 16 1.1.1.4.16.7 BCBC-5B-0 14131665 P225736 ProximalPromoter P225736 ProximalPromoter No Hits Tile 0 agtctctgcagacagagcgtctt ttttcttggggatctttcctttc 4 7 17 1.1.1.4.17.7 BCBC-5B-0 14131684 P002445 Blank P002445 Buffer Control Negative Blank 4 7 18 1.1.1.4.18.7 BCBC-5B-0 14131703 P227324 Dcn Pdx1 P227324 Pdx1 Unique Tile chr10:96863211-96864151 (+) NM_007833 + 47903 96912054 13179 Dcn DC|DSPG2|PG40|PGII|PGS2|SLRR1B|mDcn decorin MGI:94872 Mm.56769 10 10 C3|10 55.0 cM DCN 1634 0 GTGGAGAGGGAATGGAAAGAAAT GGTAAACAGCATATCATTTGCCC 4 7 19 1.1.1.4.19.7 BCBC-5B-0 14131722 P003291 Blank P003291 Buffer Control Negative Blank 4 7 20 1.1.1.4.20.7 BCBC-5B-0 14131362 P211292 Lmo4 PufferfishHuman P211292 PufferfishHuman Unique Tile chr3:144135214-144136202 (-) NM_010723 - 3383 144139585 16911 Lmo4 A730077C12Rik|Crp3|Etohi4 LIM domain only 4 MGI:109360 Mm.29187 3 3 H2|3 73.1 cM LMO4 8543 2 GCTTTTCTGTACCCCTACTTCGG CCTGCGAGTAAATATCAGCAACC 4 8 1 1.1.1.4.1.8 BCBC-5B-0 14131381 P212042 PufferfishHuman P212042 PufferfishHuman Unique Tile chr12:54272899-54273869 (-) 0 CCAAAGGCTTTTTGACTTCCTTT TCACTGGTCTTCAACTCTAGGGC 4 8 2 1.1.1.4.2.8 BCBC-5B-0 14131400 P213164 Kcnq1 Enhancer P213164 Enhancer Unique Tile chr7:142918570-142919579 (+) NM_008434 + 1882 142916688 16535 Kcnq1 AW559127|KVLQT1|Kcna9 potassium voltage-gated channel, subfamily Q, member 1 MGI:108083 Mm.356096 7 7 F5|7 69.3 cM KCNQ1 3784 NM_020277 - 19572 142898998 56843 Trpm5 0 ACTGTGCTTTCTTCCTGAATTGG CTCTTAAACCCCTCTGTTGGTCA 4 8 3 1.1.1.4.3.8 BCBC-5B-0 14131419 P213914 Il6st Enhancer P213914 Enhancer Unique Tile chr13:113585120-113586061 (+) NM_010560 + 134 113584986 16195 Il6st 5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130 interleukin 6 signal transducer MGI:96560 Mm.4364 13 13 D2.2|13 67.0 cM IL6ST 3572 1 GTCCGGAAGGTGAGAAGAACAG ATGACGATCATCCCCTGATAATG 4 8 4 1.1.1.4.4.8 BCBC-5B-0 14131438 P214754 Tcerg1 Enhancer P214754 Enhancer Unique Tile chr18:42637479-42638529 (+) NM_001039474 + 17 42637496 56070 Tcerg1 2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP 23|Taf2s|ca150|p144 transcription elongation regulator 1 (CA150) MGI:1926421 Mm.270511 18 18 B3 TCERG1 10915 0 GGATGAACTCGGCTGTCTGTAAT TGTCTTCCTCTTAAACGGTGGAA 4 8 5 1.1.1.4.5.8 BCBC-5B-0 14131457 P215876 Kif5a Enhancer P215876 Enhancer Unique Tile chr10:126665162-126666194 (+) NM_001039000;NM_008447; - 165 126666029 16572 Kif5a D10Bwg0738e|KIAA4086|Kif5|Kns|mKIAA4086 kinesin family member 5A MGI:109564 Mm.30355 10 10 D3|10 70.0 cM KIF5A 3798 NM_027151 + 3153 126669347 69654 Dctn2 1 GTACAGCTTTCCCAGAAAACCCT CCTAAGCCAAACTCCACCTTTG 4 8 6 1.1.1.4.6.8 BCBC-5B-0 14131476 P216626 Nup107 Enhancer P216626 Enhancer Unique Tile chr10:117194725-117195643 (-) NM_134010 - 22 117195665 103468 Nup107 AW541137|C76801 nucleoporin 107 MGI:2143854 Mm.12568 10 10 D2 NUP107 57122 NM_029875 - 45367 117149358 215436 Slc35e3 0 CAAAGAGTTGCAAGGTTCTAGGC CTGGTAATGTTTCTCTTTCCCCC 4 8 7 1.1.1.4.7.8 BCBC-5B-0 14131495 P217748 Slit2 Enhancer P217748 Enhancer Unique Tile chr5:48271041-48272050 (+) NM_178804 + 990 48273040 20563 Slit2 Drad-1|E030015M03Rik|E130320P19Rik|KIAA4141|Slil3|mKIAA4141 slit homolog 2 (Drosophila) MGI:1315205 Mm.289739 5 5 B3 SLIT2 9353 1 GGCTCTGCCTTCTCCATTTATTT CTACAAGTGGGTCCTCAGCCTC 4 8 8 1.1.1.4.8.8 BCBC-5B-0 14131514 P218506 Prkcm Enhancer P218506 Enhancer Unique Tile chr12:51569617-51570564 (-) NM_008858 - 541 51571105 18760 Prkcm PKD|PKD1|Pkcm protein kinase C, mu MGI:99879 Mm.133719 12 12 C1 PRKD1 5587 0 TCTCACCTCCTTTACCTCCCTTC TTTCACTTCCTGCATTAGTGGGT 4 8 9 1.1.1.4.9.8 BCBC-5B-0 14131533 P219256 Amigo3 ProximalPromoter P219256 ProximalPromoter Unique Tile chr9:107910295-107911291 (+) NM_177275 + 32 107911259 320844 Amigo3 E430002N15Rik|ali3|mKIAA1851 adhesion molecule with Ig like domain 3 MGI:2444854 Mm.22554 9 9 F2 AMIGO3 386724 NM_177910 + 2870 107907425 331026 Gmppb 0 CTCTGTTATGCCACACTCACCAG AGCCCTTCTTCTAGCTTCTCCAA 4 8 10 1.1.1.4.10.8 BCBC-5B-0 14131552 P220378 Tmem81 Enhancer P220378 Enhancer Unique Tile chr1:134330815-134331764 (+) NM_029025 + 2011 134333775 74626 Tmem81 4930429O20Rik|AI465369 transmembrane protein 81 MGI:1921876 Mm.34611 1 1 E4 TMEM81 388730 NM_172517 + 25835 134304980 213464 Rbbp5 0 CAGATTCTATGGAGTCACCAGGG AGGTGCTGGTAGCAAATTTTCAG 4 8 11 1.1.1.4.11.8 BCBC-5B-0 14131571 P221128 Olfr986 ProximalPromoter P221128 ProximalPromoter Unique Tile chr9:39936913-39937807 (+) NM_146615 + 120 39937687 258608 Olfr986 MOR104-3 olfactory receptor 986 MGI:3030820 Mm.377590 9 - OR6X1 390260 NM_030713 + 5089 39942896 80902 Zfp202 0 TTAAGTCCCCCAAAAAGAAAGGA ATTGCCCGAAAGGGTTAATATGT 4 8 12 1.1.1.4.12.8 BCBC-5B-0 14131590 P221968 1700010I14Rik Enhancer P221968 Enhancer Unique Tile chr17:8823816-8824847 (+) NM_025851 + 1687 8826534 66931 1700010I14Rik - RIKEN cDNA 1700010I14 gene MGI:1914181 Mm.67591 17 17 A1 C6orf118 168090 0 ATTATGGGTGTCCCCACTTTCTT CACAAACGAGAGCAAACTTGAGA 4 8 13 1.1.1.4.13.8 BCBC-5B-0 14131609 P223090 Olfr1297 ProximalPromoter P223090 ProximalPromoter Unique Tile chr2:111423001-111423961 (-) NM_146888 - 90 111422911 258890 Olfr1297 MGC123603|MGC123604|MOR248-4 olfactory receptor 1297 MGI:3031131 Mm.223300 2 - NM_146886 - 22873 111446834 258888 Olfr1298 0 AAGCACCCTGCTTGTACTTTGAG GGCATCACTATTGAAACTTGCCT 4 8 14 1.1.1.4.14.8 BCBC-5B-0 14131628 P223840 Tmem44 ProximalPromoter P223840 ProximalPromoter Unique Tile chr16:30470420-30471341 (-) NM_172614 - 95 30470325 224090 Tmem44 1700007N03Rik|9330161C17Rik|B230220N21 transmembrane protein 44 MGI:1924489 Mm.241459 16 16 B2 NM_178069 - 35989 30507330 224092 Lsg1 0 GTGCATTCAAGTGTGGAGTTCAG GGTTCCAAAGCCAGACAATACTC 4 8 15 1.1.1.4.15.8 BCBC-5B-0 14131647 P224962 Oxsm ProximalPromoter P224962 ProximalPromoter Unique Tile chr14:15043196-15044129 (-) NM_027695 - 121 15043075 71147 Oxsm 4933425A18Rik|C80494 3-oxoacyl-ACP synthase, mitochondrial MGI:1918397 Mm.197960 14 14 A2 OXSM 54995 NM_021504 + 570 15042626 59007 Ngly1 0 ATAGCAATGCAAAGAGGAACCTG TTAAAGGCTGTACAGTTCATGCG 4 8 16 1.1.1.4.16.8 BCBC-5B-0 14131666 P225802 Ssxb2 ProximalPromoter P225802 ProximalPromoter Unique Tile chrX:7618597-7619525 (-) NM_001001450 - 88 7618685 387132 Ssxb2 - synovial sarcoma, X member B, breakpoint 2 MGI:2446771 Mm.298030 X XA1.1 SSX5 6758 NM_026492 + 48334 7570263 67985 Ssxb1 0 TTCAGGCACTAGATGGAAAGGAG AGAAGAGACCCAAATAAGCACCC 4 8 17 1.1.1.4.17.8 BCBC-5B-0 14131685 P227810 A230079K17Rik Pdx1 P227810 Pdx1 Unique Tile chr1:183587290-183588281 (+) NM_172846 + 9580 183577710 240960 A230079K17Rik - RIKEN cDNA A230079K17 gene MGI:2444525 Mm.259654 1 1 H5 0 AGAGTCCCACATCAGGAAAATGA TGTACGTTAGGGAGAACGTGTCA 4 8 18 1.1.1.4.18.8 BCBC-5B-0 14131704 P227300 Pdx1 P227300 Pdx1 Unique Tile chr5:79286351-79287289 (+) 0 CACCTGGAACTTCTTAGTGGTGA TTTGCACTGTAGCTTATGCATGG 4 8 19 1.1.1.4.19.8 BCBC-5B-0 14131723 P003291 Blank P003291 Buffer Control Negative Blank 4 8 20 1.1.1.4.20.8 BCBC-5B-0 14131363 P211268 PufferfishHuman P211268 PufferfishHuman Unique Tile chr3:5397477-5398382 (-) 0 AAACGGTCCTTTGTTTTGTGAGA TTCCATTCATACTCTGGGCACTT 4 9 1 1.1.1.4.1.9 BCBC-5B-0 14131382 P212018 PufferfishHuman P212018 PufferfishHuman Unique Tile chr11:84566940-84567844 (-) 0 TGCTCAGAGTAAGAACTCCCAGG CCAGACCTCTCACATCTAGCCAT 4 9 2 1.1.1.4.2.9 BCBC-5B-0 14131401 P213140 Igfbp2 Enhancer P213140 Enhancer Unique Tile chr1:72760253-72761276 (+) NM_008342 + 2540 72757713 16008 Igfbp2 AI255832|Igfbp-2 insulin-like growth factor binding protein 2 MGI:96437 Mm.141936 1 1 C3|1 36.1 cM IGFBP2 3485 NM_010518 - 46206 72807482 16011 Igfbp5 1 CATACCCTCTTATTTCCACGCAG CCTCAGTTTACAAGCCAACCAAC 4 9 3 1.1.1.4.3.9 BCBC-5B-0 14131420 P213980 Mmp7 Enhancer P213980 Enhancer Unique Tile chr9:7688664-7689628 (+) NM_010810 + 2472 7692100 17393 Mmp7 MAT matrix metallopeptidase 7 MGI:103189 Mm.4825 9 9 A1|9 1.0 cM MMP7 4316 0 GTAGCCAGCAATGGTTTTGTTTC AAGGGATAGGTAAGAGGCTGGTG 4 9 4 1.1.1.4.4.9 BCBC-5B-0 14131439 P214730 Omg Enhancer P214730 Enhancer Unique Tile chr11:79318937-79319866 (-) NM_019409 - 304 79320170 18377 Omg - oligodendrocyte myelin glycoprotein MGI:106586 Mm.93335 11 11 B5|11 46.07 cM OMG 4974 NM_146023 - 20023 79339889 216984 Evi2b 0 TTACAAATGTACGCTATCGGGCT GCAGACTTTCAAGCCTGTTGTTT 4 9 5 1.1.1.4.5.9 BCBC-5B-0 14131458 P215852 Rhebl1 Enhancer P215852 Enhancer Unique Tile chr15:98708221-98709202 (-) NM_026967 - 153 98709355 69159 Rhebl1 1810036J22Rik Ras homolog enriched in brain like 1 MGI:1916409 Mm.259708 15 15 F2 RHEBL1 121268 NM_001033276 - 15778 98692443 223887 BC032281 0 CTAGGGTACCGCTCCGTAGGTAA GACTCCCAGAGCTGATTAGTGGA 4 9 6 1.1.1.4.6.9 BCBC-5B-0 14131477 P216602 Ptov1 Enhancer P216602 Enhancer Unique Tile chr7:44736287-44737186 (-) NM_133949 - 520 44737706 84113 Ptov1 1110030G05Rik|AU041779 prostate tumor over expressed gene 1 MGI:1933946 Mm.42855 7 7 B2 PTOV1 53635 NM_021549 + 10842 44725445 59047 Pnkp 0 GTTCGAATTACTGCTGACTGCG AGTGTCAGCATGTACACCACCAC 4 9 7 1.1.1.4.7.9 BCBC-5B-0 14131496 P217442 Slc31a1 Enhancer P217442 Enhancer Unique Tile chr4:61847316-61848215 (+) NM_175090 + 193 61847123 20529 Slc31a1 4930445G01Rik|AI787263|AU016967|Ctr1 solute carrier family 31, member 1 MGI:1333843 Mm.248637 4 4 C1-C2 SLC31A1 1317 NM_139291 - 41017 61889232 66440 Cdc26 0 CGGACTAGAAGTCATGGGATCTG CCACTGTGGGCAAGAAGACTTAC 4 9 8 1.1.1.4.8.9 BCBC-5B-0 14131515 P218482 Actg2 Enhancer P218482 Enhancer Unique Tile chr6:83505874-83506891 (-) NM_009610 - 3984 83501890 11468 Actg2 ACTA3|Act-4|Act4|SMGA actin, gamma 2, smooth muscle, enteric MGI:104589 Mm.292865 6 6 C3|6 34.95 cM ACTG2 72 NM_024239 - 31200 83538091 70527 Stambp 0 TTCTGGGTTTCAACACAACTCCT ACAGACAGAAGCAGACAGGCTCT 4 9 9 1.1.1.4.9.9 BCBC-5B-0 14131534 P219232 Ipo7 ProximalPromoter P219232 ProximalPromoter Unique Tile chr7:109808529-109809572 (+) NM_181517 + 29 109809601 233726 Ipo7 A330055O14Rik|C330016G14|Imp7|Ranbp7 importin 7 MGI:2152414 Mm.222328; Mm.400158; Mm.222328; Mm.400158; Mm.222328; Mm.400158; Mm.222328; Mm.400158; Mm.222328; Mm.400158; Mm.222328; Mm.400158; Mm.222328; Mm.400158; Mm.222328; Mm.400158; Mm.222328; Mm.400158; Mm.222328; Mm.400158; Mm.222328; Mm.400158; Mm.222328; Mm.400158; Mm.222328; Mm.400158; Mm.222328; Mm.400158; Mm.222328; Mm.400158; Mm.222328; Mm.400158; Mm.222328; Mm.400158; Mm.222328; Mm.400158 7 7 E3 IPO7 10527 NM_153525 - 31121 109777408 233724 Tmem41b 0 TTCACTGCTGCAATCCTTCAATA CGGTGCTACTGAGGCAGAAATAG 4 9 10 1.1.1.4.10.9 BCBC-5B-0 14131553 P220354 Scgb1a1 Enhancer P220354 Enhancer Unique Tile chr19:9157422-9158322 (-) NM_011681 - 2449 9154973 22287 Scgb1a1 CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg secretoglobin, family 1A, member 1 (uteroglobin) MGI:98919 Mm.2258 19 19 A SCGB1A1 7356 NM_025610 - 28055 9186377 66514 Asrgl1 0 TAAGCAAAACAACCAAGTGCTGA CACGTACTAGTCCCATGACCCTC 4 9 11 1.1.1.4.11.9 BCBC-5B-0 14131572 P221194 D17Ertd441e ProximalPromoter P221194 ProximalPromoter Unique Tile chr17:24688317-24689324 (-) NM_198937 - 65 24688252 52009 D17Ertd441e 2810430B18Rik|AL022629|C16orf34|Hn1l DNA segment, Chr 17, ERATO Doi 441, expressed MGI:1196260 Mm.34546; Mm.371601; Mm.34546; Mm.371601; Mm.34546; Mm.371601; Mm.34546; Mm.371601; Mm.34546; Mm.371601; Mm.34546; Mm.371601; Mm.34546; Mm.371601; Mm.34546; Mm.371601; Mm.34546; Mm.371601; Mm.34546; Mm.371601; Mm.34546; Mm.371601; Mm.34546; Mm.371601; Mm.34546; Mm.371601; Mm.34546; Mm.371601; Mm.34546; Mm.371601 17 17 A3.3|17 11.0 cM NM_013931 - 23750 24664567 30957 Mapk8ip3 1 ATGCATTCATGAGGAAATACCGT TCATGTCTCTGCAGCCTATCGTA 4 9 12 1.1.1.4.12.9 BCBC-5B-0 14131591 P221944 Olfr631 ProximalPromoter P221944 ProximalPromoter Unique Tile chr7:103788050-103788950 (+) NM_146959 + 68 103788882 258961 Olfr631 MOR3-1 olfactory receptor 631 MGI:3030465 Mm.377772 7 7 E3 OR51M1 390059 NM_013616 + 10773 103777277 18365 Olfr64 0 TGACACAGTTTTCATGCCAGTCT AAAAACCCATGAAGTCAGAGCAG 4 9 13 1.1.1.4.13.9 BCBC-5B-0 14131610 P223066 B930041F14Rik ProximalPromoter P223066 ProximalPromoter Unique Tile chr4:154537240-154538069 (+) NM_178699 + 72 154538141 230991 B930041F14Rik MNCb-3966 RIKEN cDNA B930041F14 gene MGI:2444790 Mm.29083 4 4 E2 NM_026899 + 10854 154548923 68991 Ssu72 0 GTCTCCTTGCTTGGTTGTTTTGT ACGGGCATGAGAAAGTCTACCTA 4 9 14 1.1.1.4.14.9 BCBC-5B-0 14131629 P223816 Olfr1389 ProximalPromoter P223816 ProximalPromoter Unique Tile chr11:49272872-49273833 (+) NM_147066 + 67 49273900 259069 Olfr1389 MOR256-1 olfactory receptor 1389 MGI:3031223 Mm.377820 11 - NM_146467 + 13442 49287275 258459 Olfr1388 0 CTGCAAGCCATGAAGGAAAATAC ATCCTCACGGTTCCCTAAACATT 4 9 15 1.1.1.4.15.9 BCBC-5B-0 14131648 P224656 Impad1 ProximalPromoter P224656 ProximalPromoter Unique Tile chr4:4720479-4721553 (-) NM_177730 - 26 4720453 242291 Impad1 1110001C20Rik|AA408880|AI451589|AL022796|B230207P20 inositol monophosphatase domain containing 1 MGI:1915720 Mm.218889; Mm.369779; Mm.392937; Mm.218889; Mm.369779; Mm.392937; Mm.218889; Mm.369779; Mm.392937; Mm.218889; Mm.369779; Mm.392937; Mm.218889; Mm.369779; Mm.392937; Mm.218889; Mm.369779; Mm.392937; Mm.218889; Mm.369779; Mm.392937; Mm.218889; Mm.369779; Mm.392937; Mm.218889; Mm.369779; Mm.392937; Mm.218889; Mm.369779; Mm.392937; Mm.218889; Mm.369779; Mm.392937 4 4 A1 IMPAD1 54928 0 CCAGGCTGGCCTAGAACTTTTAT TATATCCGGGTTAGGAGAGGGAA 4 9 16 1.1.1.4.16.9 BCBC-5B-0 14131667 P225778 AI597468 ProximalPromoter P225778 ProximalPromoter Unique Tile chr10:84531716-84532661 (+) NM_001013028 + 89 84532572 103266 AI597468 - expressed sequence AI597468 MGI:2143652 Mm.391435 10 10 C1 C12orf23 90488 NM_010214 - 420 84532241 14202 Fhl4 1 CTTGGAAGCTCACTGTCCTGTTT AGAAGTCGGAAGACTCTCGGTG 4 9 17 1.1.1.4.17.9 BCBC-5B-0 14131686 P227786 Pdx1 P227786 Pdx1 Unique Tile chr2:14807111-14808094 (+) 0 AGGAAATGAAACCTGGGATCTGT AGAAATTGCCAGTGAGGAGTCTG 4 9 18 1.1.1.4.18.9 BCBC-5B-0 14131705 P227276 Pdx1 P227276 Pdx1 Unique Tile chr14:117204215-117205152 (+) 0 AGATTTGGATCTGGGCAATCTTT CTGATCCCAAACTCACAAACTCC 4 9 19 1.1.1.4.19.9 BCBC-5B-0 14131724 P003243 Blank P003243 Buffer Control Negative Blank 4 9 20 1.1.1.4.20.9 BCBC-5B-0 14131364 P211244 PufferfishHuman P211244 PufferfishHuman Unique Tile chr12:26456947-26457974 (+) 0 CTCTAAACAAGAAAGGATGCCCA ACAGCTGTATCCTGATTCCCAGA 4 10 1 1.1.1.4.1.10 BCBC-5B-0 14131383 P211994 PufferfishHuman P211994 PufferfishHuman Unique Tile chr9:69643660-69644621 (+) 0 AACTCGCCACAAACTAAACCAAC TTTCCACAAAGACAGTTTCCTCC 4 10 2 1.1.1.4.2.10 BCBC-5B-0 14131402 P212834 Arg1 Enhancer P212834 Enhancer Unique Tile chr10:24615730-24616658 (-) NM_007482 - 196 24616854 11846 Arg1 AI|AI256583|Arg-1|PGIF|arginase I arginase 1, liver MGI:88070 Mm.154144 10 10 A4 ARG1 383 0 GTCTAGCTGCAAGCTGGAAATGT ACCAAATACAGTCTGGGTCTCCA 4 10 3 1.1.1.4.3.10 BCBC-5B-0 14131421 P213956 Tmed1 Enhancer P213956 Enhancer Unique Tile chr9:21264021-21265249 (-) NM_010744 - 3433 21260588 17083 Tmed1 Il1rl1l|Ly84l|St2l transmembrane emp24 domain containing 1 MGI:106201 Mm.196618 9 9 A4 TMED1 11018 NM_206536 + 11429 21276678 382062 AB124611 1 AAACCTGACTGCCTGAAGTGAAC AACTGTGGTGGTTTGAAAATGCT 4 10 4 1.1.1.4.4.10 BCBC-5B-0 14131440 P214706 Chm Enhancer P214706 Enhancer Unique Tile chrX:109301474-109302441 (-) NM_018818 - 8 109302449 12662 Chm Rep-1 choroidermia MGI:892979 Mm.257316; Mm.393010; Mm.257316; Mm.393010; Mm.257316; Mm.393010; Mm.257316; Mm.393010; Mm.257316; Mm.393010; Mm.257316; Mm.393010; Mm.257316; Mm.393010; Mm.257316; Mm.393010; Mm.257316; Mm.393010; Mm.257316; Mm.393010; Mm.257316; Mm.393010 X X E1 CHM 1121 0 CTGTCAAGATGGCGGATAATCTC CCCTCCCCAAACTCTCTCTTTTA 4 10 5 1.1.1.4.5.10 BCBC-5B-0 14131459 P215828 Sharpin Enhancer P215828 Enhancer Unique Tile chr15:76174500-76175526 (+) NM_025340 - 2780 76178306 106025 Sharpin 0610041B22Rik|AW121341|RBCKL1|SIPL1 SHANK-associated RH domain interacting protein MGI:1913331 Mm.41463 15 15 D3 SHARPIN 81858 NM_026859 + 3034 76178560 68877 Maf1 0 CCAGACTCTTGTACCTTTGGTGG TGTGGCTGGTGTCTAGTTGTGAT 4 10 6 1.1.1.4.6.10 BCBC-5B-0 14131478 P216668 A630042L21Rik Enhancer P216668 Enhancer Unique Tile chr18:61305524-61306451 (-) NM_134134 - 3105 61302419 106894 A630042L21Rik 2510002C16Rik|AI413166|mKIAA0194 RIKEN cDNA A630042L21 gene MGI:2441817 Mm.22574; Mm.27620; Mm.22574; Mm.27620; Mm.22574; Mm.27620; Mm.22574; Mm.27620; Mm.22574; Mm.27620; Mm.22574; Mm.27620; Mm.22574; Mm.27620; Mm.22574; Mm.27620; Mm.22574; Mm.27620; Mm.22574; Mm.27620; Mm.22574; Mm.27620; Mm.22574; Mm.27620; Mm.22574; Mm.27620; Mm.22574; Mm.27620; Mm.22574; Mm.27620; Mm.22574; Mm.27620 18 18 E1 NM_007885 - 30374 61336825 13521 Slc26a2 0 AAAGAGTCAGAAGGATTTGCACG ATACCTCCCTGCAACAGTTTTCA 4 10 7 1.1.1.4.7.10 BCBC-5B-0 14131497 P217418 Gpkow Enhancer P217418 Enhancer Intra Repeat: SINE Tile chrX:6849673-6850652 (+) NM_173747 + 3519 6854171 209416 Gpkow 4432411B18|DXImx41e|T54|mT54 G patch domain and KOW motifs MGI:1859610 Mm.148753 X X A1.1|X 1.6 cM GPKOW 27238 NM_018832 - 11625 6838048 54634 Pdzx 1 TTTTTCGAGACAGGGTTTCTCTG CAGGGTGTCTCTGTATAGCCCTG 4 10 8 1.1.1.4.8.10 BCBC-5B-0 14131516 P218458 Defb6 ProximalPromoter P218458 ProximalPromoter Unique Tile chr8:19224463-19225423 (+) NM_054074 + 31 19225454 116746 Defb6 mBD-6 defensin beta 6 MGI:2151044 Mm.358822 8 8 A1.3 NM_001025351 + 14469 19239892 574081 Defb53 0 AAAGATGTTGCAGAGAGCAGAGG GTGCCAGGTACTTTCTCCTGTGT 4 10 9 1.1.1.4.9.10 BCBC-5B-0 14131535 P219208 Klrc1 ProximalPromoter P219208 ProximalPromoter Unique Tile chr6:129644586-129645584 (-) NM_010652 - 17 129644603 16641 Klrc1 CD159a|NKG2A|NKG2B killer cell lectin-like receptor subfamily C, member 1 MGI:1336161 Mm.56899 6 6 G1-2 KLRC1 3821 NM_010653 - 18204 129626382 16642 Klrc2 0 CCAGGGCTAACTGATTGAATTGT GACGCGTTCATTACTCATGTCTG 4 10 10 1.1.1.4.10.10 BCBC-5B-0 14131554 P220048 Mycbpap ProximalPromoter P220048 ProximalPromoter Unique Tile chr11:94326271-94327184 (-) NM_170671 - 2452 94328723 104601 Mycbpap 4932408B01Rik|AMAP-1|AW125474 Mycbp associated protein MGI:2388726 Mm.84725 11 11 D MYCBPAP 84073 NM_027984 - 10258 94316013 71889 Epn3 0 GTCGATTCTCAGCAAAACATCCT ATACGGTTTCTGAGGGGTAGCTC 4 10 11 1.1.1.4.11.10 BCBC-5B-0 14131573 P221170 Cdkl2 Enhancer P221170 Enhancer Unique Tile chr5:93117136-93118075 (-) NM_177270;NM_016912; - 76 93118151 53886 Cdkl2 5330436L21Rik|AI505225|KKIAMRE|Kkm|MGC144031|MGC144032 cyclin-dependent kinase-like 2 (CDC2-related kinase) MGI:1858227 Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963; Mm.402124; Mm.44963 5 5 E2 CDKL2 8999 NM_011816 - 40783 93158858 23881 E430034L04Rik 0 GGCAGAAAGGTCCCTACAAACTT GGCCTAAAATATGCCTTGTTTCC 4 10 12 1.1.1.4.12.10 BCBC-5B-0 14131592 P221920 ProximalPromoter P221920 ProximalPromoter End Repeat Tile chr2:135350150-135351071 (+) 1 AGTGTAGGGTCTCCACAAAGGGT GTGTGTGTGTGTGTGTGTGTGTG 4 10 13 1.1.1.4.13.10 BCBC-5B-0 14131611 P223042 Rpl27 Enhancer P223042 Enhancer Unique Tile chr11:101253853-101254924 (+) NM_011289 + 3580 101258504 19942 Rpl27 MGC103134 ribosomal protein L27 MGI:98036 Mm.260737; Mm.340658; Mm.260737; Mm.340658; Mm.260737; Mm.340658; Mm.260737; Mm.340658; Mm.260737; Mm.340658; Mm.260737; Mm.340658; Mm.260737; Mm.340658; Mm.260737; Mm.340658; Mm.260737; Mm.340658; Mm.260737; Mm.340658; Mm.260737; Mm.340658; Mm.260737; Mm.340658; Mm.260737; Mm.340658; Mm.260737; Mm.340658 11 11 A1 RPL27 6155 NM_027320 + 9577 101264501 70110 Ifi35 2 TCGTGCAAACTTTATATGCCTCA CCTCAAACTCAAAAATCCACCTG 4 10 14 1.1.1.4.14.10 BCBC-5B-0 14131630 P223882 Txnl4b ProximalPromoter P223882 ProximalPromoter Unique Tile chr8:112453991-112455066 (+) NM_175646 + 67 112455133 234723 Txnl4b AI595343|D530025J19Rik|DLP|Dim2 thioredoxin-like 4B MGI:2443724 Mm.37667 8 8 D3 TXNL4B 54957 NM_178380 - 336 112454730 64340 Dhx38 0 ATTGAAAGCGAACAGGAAGTCAG CAATAGTCCGGTAATCCGACAAG 4 10 15 1.1.1.4.15.10 BCBC-5B-0 14131649 P224632 Donson ProximalPromoter P224632 ProximalPromoter Unique Tile chr16:91577529-91578609 (-) NM_021720 - 58 91577587 60364 Donson 1110025J21Rik|AI845729|ORF60 downstream neighbor of SON MGI:1890621 Mm.328698 16 16 C3.3 DONSON 29980 NM_133679 - 38822 91617431 66609 Cryzl1 1 TGTTGAGAAAAACCAAGGACGAT GCCTCTTGAAGCTAGGCGAGTA 4 10 16 1.1.1.4.16.10 BCBC-5B-0 14131668 P225754 Olfr456 ProximalPromoter P225754 ProximalPromoter Unique Tile chr6:42416720-42417665 (-) NM_001011528 - 78 42416798 259144 Olfr456 MOR257-7P olfactory receptor 456 MGI:3030290 Mm.377865 6 6 B2.1 NM_146987 - 14937 42401783 258989 Olfr457 0 CAGGGATATAAGCCTCCTCGAAT AGAGTCCAGCTTGGATGTTTTTG 4 10 17 1.1.1.4.17.10 BCBC-5B-0 14131687 P227762 Pdx1 P227762 Pdx1 Unique Tile chr16:49002922-49003899 (+) 0 TAATGTGCAGAACCATTTCAGGG AGCTCCATCACTCTCATAGCTGG 4 10 18 1.1.1.4.18.10 BCBC-5B-0 14131706 P226106 Pdx1 P226106 Pdx1 Unique Tile chr3:123529295-123530195 (+) 0 TCTTTTTCGTGAAGGTCATTTCC CCTCCCACCCAGTCTCTTACTCT 4 10 19 1.1.1.4.19.10 BCBC-5B-0 14131725 P003243 Blank P003243 Buffer Control Negative Blank 4 10 20 1.1.1.4.20.10 BCBC-5B-0 14131365 P211220 PufferfishHuman P211220 PufferfishHuman Unique Tile chr4:98867255-98868163 (-) 0 CTGGGGAGCTGACATATATCCTG CCAAATTCATTTGTCAAAGAGCC 4 11 1 1.1.1.4.1.11 BCBC-5B-0 14131384 P212060 B930011P16Rik ChickenHuman P212060 ChickenHuman Unique Tile chr5:27408334-27409321 (+) NM_207282 + 28155 27380179 403186 B930011P16Rik Gm1377 RIKEN cDNA B930011P16 gene MGI:2686223 Mm.42078 5 5 B1 0 GCTGCAGACATTCTACCACCTTT GAGACTCATTGGCCTTTTCAAGA 4 11 2 1.1.1.4.2.11 BCBC-5B-0 14131403 P212810 Adprh Enhancer P212810 Enhancer Unique Tile chr16:38374390-38375363 (-) NM_007414 - 2468 38371922 11544 Adprh Arh1 ADP-ribosylarginine hydrolase MGI:1098234 Mm.20047 16 16 B4 ADPRH 141 NM_009855 + 2802 38378165 12519 Cd80 1 TTAAGCATAGCTTGTGAGGAGGC CCAGGACAGCCAAGGATATACAG 4 11 3 1.1.1.4.3.11 BCBC-5B-0 14131422 P213932 Kif12 Enhancer P213932 Enhancer Unique Tile chr4:62660919-62661827 (-) NM_010616 - 2427 62658492 16552 Kif12 - kinesin family member 12 MGI:1098232 Mm.216057 4 4 C1 KIF12 113220 NM_007443 - 20408 62640511 11699 Ambp 0 ATTGTCAGAGATTGGACTGCCTC TTACATTTCCTGCAAAGTGCTCA 4 11 4 1.1.1.4.4.11 BCBC-5B-0 14131441 P214682 Agpat6 Enhancer P214682 Enhancer Unique Tile chr8:24672635-24673567 (-) NM_018743 - 324 24673891 102247 Agpat6 AU041707|AW545732|Tsarg7 1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta) MGI:2142716 Mm.200898 8 8 A2 AGPAT6 137964 NM_024240 - 29617 24703184 109145 Gins4 0 CTTTCTTTCCCTTCCCTCCTCTC CGCTCCAGTGCTAAATTTTTGTT 4 11 5 1.1.1.4.5.11 BCBC-5B-0 14131460 P215522 Zcchc18 Enhancer P215522 Enhancer Unique Tile chrX:132337574-132338553 (+) NM_025893;NM_001035510;NM_001035509; + 965 132339518 66995 Zcchc18 1500031H04Rik|Sizn2 zinc finger, CCHC domain containing 18 MGI:1914245 Mm.276518 X X F1 NM_207267 - 14360 132323214 399591 4930488E11Rik 0 TCAAGAGTCCAGTGTAAGCCCTC AAACTGAGACACGTTTCTGCTCC 4 11 6 1.1.1.4.6.11 BCBC-5B-0 14131479 P216644 Cenpo Enhancer P216644 Enhancer Unique Tile chr12:4245548-4246503 (-) NM_134046 - 3622 4241926 52504 Cenpo 2810429O05Rik|8430427C03Rik|D12Ertd482e|MGC36863 centromere protein O MGI:1923800 Mm.70546 12 12 A1.1|12 1.0 cM CENPO 79172 1 CCTCAGTTAGCCACATCACTCCT TTCATTTCACTGTGCTCTTGCTC 4 11 7 1.1.1.4.7.11 BCBC-5B-0 14131498 P217394 Sdccag3 Enhancer P217394 Enhancer Unique Tile chr2:26206708-26207630 (+) NM_026563;NM_030155; - 3644 26211274 68112 Sdccag3 C330016H24Rik|C630038K21Rik serologically defined colon cancer antigen 3 MGI:1915362 Mm.253771 2 2 A3 SDCCAG3 10807 NM_173180 + 3726 26211356 66865 Pmpca 0 ACTGTTCATGACAAGGTGGAGGT TCCTCTACTGAGGGTGAGGACAC 4 11 8 1.1.1.4.8.11 BCBC-5B-0 14131517 P218434 Tnfsf15 ProximalPromoter P218434 ProximalPromoter Unique Tile chr4:63231457-63232385 (-) NM_177371 - 9 63231448 326623 Tnfsf15 TL1|TL1A|VEGI tumor necrosis factor (ligand) superfamily, member 15 MGI:2180140 Mm.208152 4 4 C1 TNFSF15 9966 0 GGAGGAAGAAGGGAAATGAAAGA GCAGCTGTCACACTGAGTGAGTT 4 11 9 1.1.1.4.9.11 BCBC-5B-0 14131536 P219274 B930041G04 ProximalPromoter P219274 ProximalPromoter Unique Tile chrX:135727372-135728272 (+) NM_177750 + 62 135728334 245643 B930041G04 - hypothetical protein B930041G04 Mm.208683 X X F1 0 GAAGAGGACAGCAGATCCCATTA CCTTCCTTCCTTCCTTCCTTTTT 4 11 10 1.1.1.4.10.11 BCBC-5B-0 14131555 P220024 Olfr669 ProximalPromoter P220024 ProximalPromoter Unique Tile chr7:104811416-104812433 (+) NM_147043 + 85 104812348 259045 Olfr669 MGC129246|MOR34-6 olfactory receptor 669 MGI:3030503 Mm.389971 7 - OR52N5 390075 NM_147059 - 11833 104799583 259061 Olfr668 0 ATCCTTAGTGGTTGTTGCTTTGC TCCATATATGCACTGCTTCGAGA 4 11 11 1.1.1.4.11.11 BCBC-5B-0 14131574 P221146 Cdx4 Enhancer P221146 Enhancer Unique Tile chrX:99528089-99529051 (+) NM_007674 + 3973 99524116 12592 Cdx4 Cdx-3|Cdx-4|Cdx3 caudal type homeo box 4 MGI:88362 Mm.4353 X X D|X 42.5 cM CDX4 1046 NM_009767 + 30223 99559274 12212 Chic1 0 TTCATATGGGCTTTTCTGCCTAA TCAGGACCTCGGTTTTAGAATCA 4 11 12 1.1.1.4.12.11 BCBC-5B-0 14131593 P221896 Ndufa6 Enhancer P221896 Enhancer Unique Tile chr15:82180731-82181661 (-) NM_025987 - 340 82182001 67130 Ndufa6 14kDa|2700038D15Rik|B230217P19Rik NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14) MGI:1914380 Mm.27570 15 15 E2 NDUFA6 4700 NM_026914 + 6922 82173809 69029 1500032L24Rik 0 CCTTATTTCTTATGGAGCCCCTG CAGAACCCGTCACTCAGAATCTT 4 11 13 1.1.1.4.13.11 BCBC-5B-0 14131612 P222736 Enhancer P222736 Enhancer Unique Tile chr6:118982280-118983278 (-) 0 GCTCGTAGAATAGCCAAAGGGAT CAGATTATCACCTGCCCTTTCAC 4 11 14 1.1.1.4.14.11 BCBC-5B-0 14131631 P223858 Surf4 Enhancer P223858 Enhancer Unique Tile chr2:26754198-26755217 (-) NM_011512 - 163 26755380 20932 Surf4 AL033340|AL033373|Surf-4 surfeit gene 4 MGI:98445 Mm.300594 2 2 A3|2 15.5 cM SURF4 6836 NM_198628 + 860 26756077 279029 Gm711 1 TAGCTCTACGGAGAAATCCGAGG GATAGTTGGCAGCTTCTTGGAGA 4 11 15 1.1.1.4.15.11 BCBC-5B-0 14131650 P224608 Zfp654 Enhancer P224608 Enhancer Unique Tile chr16:64724073-64725053 (-) NM_028059 - 3470 64728523 72020 Zfp654 1600021C16Rik|1810008K20Rik zinc finger protein 654 MGI:1919270 Mm.25960 16 16 C1.3 0 TGGAATTTGTTTTCTTGTCCTGC TAGCTGGGACACTTAATTGGCAT 4 11 16 1.1.1.4.16.11 BCBC-5B-0 14131669 P225730 Myh4 ProximalPromoter P225730 ProximalPromoter Unique Tile chr11:67053351-67054323 (+) NM_010855 + 100 67054223 17884 Myh4 AI506973|MHC2B|MyHC-IIb|Myhsf myosin, heavy polypeptide 4, skeletal muscle MGI:1339713 Mm.297382 11 11 B3|11 35.0 cM MYH4 4622 NM_030679 + 37043 67016308 17879 Myh1 0 CTATGACAAACCCTCCAGAAACG ATAGCGAGAGCCCTTTGTTCTCT 4 11 17 1.1.1.4.17.11 BCBC-5B-0 14131688 P002439 Blank P002439 Buffer Control Negative Blank 4 11 18 1.1.1.4.18.11 BCBC-5B-0 14131707 P226082 Pdx1 P226082 Pdx1 Unique Tile chr13:41310403-41311303 (+) 0 ACCGTGTGATCCATGTTTCTTTT CAGATGCTCTGGCTGGATCTAAG 4 11 19 1.1.1.4.19.11 BCBC-5B-0 14131726 P003147 Blank P003147 Buffer Control Negative Blank 4 11 20 1.1.1.4.20.11 BCBC-5B-0 14131366 P210914 Metapl1 PufferfishHuman P210914 PufferfishHuman Unique Tile chr2:71317406-71318486 (+) NM_025633 + 5392 71312014 66559 Metapl1 2310066F24Rik|3110033D18Rik|AV117938 methionine aminopeptidase-like 1 MGI:1913809 Mm.152796 2 2 C2 MAP1D 254042 NM_010053 + 11797 71330283 13390 Dlx1 0 GGAAAGCTCAGTCACCTTGAAAA TACTGATCTAGCCTGTTCCCAGC 4 12 1 1.1.1.4.1.12 BCBC-5B-0 14131385 P212036 PufferfishHuman P212036 PufferfishHuman Unique Tile chr12:39852116-39853037 (-) 0 CAGTGCAGTGTTCTACCAACCAC GCTTCTGCCTATGTAGCCATCTC 4 12 2 1.1.1.4.2.12 BCBC-5B-0 14131404 P212786 Neurod1 ChickenHuman P212786 ChickenHuman Unique Tile chr2:79253845-79254810 (+) NM_010894 - 2605 79257415 18012 Neurod1 BETA2|BHF-1|Neurod neurogenic differentiation 1 MGI:1339708 Mm.4636 2 2 C3|2 46.0 cM NEUROD1 4760 0 TCAAACACTCCGTAAAATCATGG ACGATTAGAGGCACGTCAGTTTC 4 12 3 1.1.1.4.3.12 BCBC-5B-0 14131423 P213908 Ctbp2 Enhancer P213908 Enhancer Unique Tile chr7:132916757-132917663 (-) NM_009980 - 2540 132920203 13017 Ctbp2 AA407280|D7Ertd45e|Ribeye C-terminal binding protein 2 MGI:1201686 Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984; Mm.246240; Mm.389984 7 7 F3|7 66.0 cM CTBP2 1488 0 AGGTTGTTAGGTCAGGCTGTCAC AACCTTTCGGAAGATCAAAGTCC 4 12 4 1.1.1.4.4.12 BCBC-5B-0 14131442 P214748 Ppie Enhancer P214748 Enhancer Unique Tile chr4:122641019-122641968 (-) NM_019489 - 271 122642239 56031 Ppie 2010010D16Rik|Cyp33 peptidylprolyl isomerase E (cyclophilin E) MGI:1917118 Mm.126873 4 4 D2.2 PPIE 10450 NM_181859 + 22453 122618566 353371 Oxct2b 0 TCTGCCCTAAAGGAGGAGTTACC TGTGATTAGTGCTGGGAACTGAA 4 12 5 1.1.1.4.5.12 BCBC-5B-0 14131461 P215498 3110001D03Rik Enhancer P215498 Enhancer Unique Tile chr4:74747574-74748492 (-) NM_025849 - 1025 74749517 66928 3110001D03Rik 1700027K24Rik RIKEN cDNA 3110001D03 gene MGI:1914178 Mm.24332 4 4 C3 C9orf123 90871 0 TATCTTCAAGTCCACCCCTGATT TTATTGAAAGGAAGGGTTGCAGA 4 12 6 1.1.1.4.6.12 BCBC-5B-0 14131480 P216620 A530089I17Rik Enhancer P216620 Enhancer Unique Tile chr10:40992789-40993764 (-) NM_133999 - 1133 40991656 103199 A530089I17Rik AI326867|Sac3 RIKEN cDNA A530089I17 gene MGI:2143585 Mm.277242 10 10 B1 KIAA0274 9896 0 ATGAGTGAGCGGTTAGAGACCTG CTGTAGATTCAAGGCAGGACGTT 4 12 7 1.1.1.4.7.12 BCBC-5B-0 14131499 P217370 Slc7a14 Enhancer P217370 Enhancer Unique Tile chr3:31500078-31500978 (-) NM_172861 - 195 31501173 241919 Slc7a14 A930013N06|BC061928 solute carrier family 7 (cationic amino acid transporter, y+ system), member 14 MGI:3040688 Mm.285366 3 3 A3 SLC7A14 57709 0 AGACTAAGATGAACCAGGGAGCC CTCAAGCTCTCAATGAACCGAGT 4 12 8 1.1.1.4.8.12 BCBC-5B-0 14131518 P001443 Blank P001443 Buffer Control Negative Blank 4 12 9 1.1.1.4.9.12 BCBC-5B-0 14131537 P219250 Otof Enhancer P219250 Enhancer Unique Tile chr5:30737947-30738888 (+) NM_031875 - 405 30738483 83762 Otof - otoferlin MGI:1891247 Mm.244502 5 - OTOF 9381 NM_029285 + 3766 30742654 75434 1700001C02Rik 0 TCAGGCATAGACTCCTTTTCAGC CAAGCTCAGACAGTGAAGTTCCA 4 12 10 1.1.1.4.10.12 BCBC-5B-0 14131556 P220000 2700062C07Rik Enhancer P220000 Enhancer End Repeat Tile chr18:24611886-24612874 (+) NM_026529 + 996 24613870 68046 2700062C07Rik AI195775|C87515|MGC103375 RIKEN cDNA 2700062C07 gene MGI:1915296 Mm.276574 18 18 A2 C18orf21 83608 1 AGGTCTGTGTGGAAAATCAGGAG ACACACACACACACACACACACA 4 12 11 1.1.1.4.11.12 BCBC-5B-0 14131575 P221122 Ykt6 Enhancer P221122 Enhancer Unique Tile chr11:5860045-5860960 (+) NM_019661 + 4211 5855834 56418 Ykt6 0610042I15Rik|1810013M05Rik|AW105923 YKT6 homolog (S. Cerevisiae) MGI:1927550 Mm.294821 11 11 A1 YKT6 10652 NM_010292 - 10443 5849602 103988 Gck 0 TCAGTGGCCTCAGGATAGAGTTC TAGCAGGATCTAAATGAGCTGCC 4 12 12 1.1.1.4.12.12 BCBC-5B-0 14131594 P221962 Il15 Enhancer P221962 Enhancer Unique Tile chr8:85296966-85297940 (-) NM_008357 - 352 85298292 16168 Il15 AI503618 interleukin 15 MGI:103014 Mm.4392 8 8 C2|8 38.0 cM IL15 3600 0 CTCCTCTCTCCCTTTGCAAAAAT CTGTCAGGGATCTGAACTAGGGA 4 12 13 1.1.1.4.13.12 BCBC-5B-0 14131613 P222712 Olfr1340 ProximalPromoter P222712 ProximalPromoter Unique Tile chr4:118223121-118224055 (+) NM_146304 + 125 118224180 258301 Olfr1340 MGC123648|MOR258-6 olfactory receptor 1340 MGI:3031174 Mm.377421 4 - NM_146852 + 8407 118232462 258851 Olfr1339 0 TGTAGCAGGCATTTAGGAACCAT TGCCCTGGAAGTAATCTATCCAA 4 12 14 1.1.1.4.14.12 BCBC-5B-0 14131632 P223834 Krtap16-4 ProximalPromoter P223834 ProximalPromoter Unique Tile chr16:88773940-88774976 (-) NM_130873 - 8 88773948 170654 Krtap16-4 - keratin associated protein 16-4 MGI:2157757 Mm.196689 16 16 C3.3 KRTAP19-3 337970 NM_130857 - 7091 88766849 77918 Krtap16-5 0 AGAGACACTATTGGGGGACATCA AGAGCTTGGTATGCTGTTCAAGG 4 12 15 1.1.1.4.15.12 BCBC-5B-0 14131651 P224584 Olfr1404 ProximalPromoter P224584 ProximalPromoter Unique Tile chr1:175051324-175052317 (+) NM_146881 + 10 175052327 258881 Olfr1404 MOR267-2 olfactory receptor 1404 MGI:3031238 Mm.377733 1 - NM_001001809 + 11292 175040032 258880 Olfr218 0 AAGGATACCCCTGCCCTATTACA ATATGCTTCAGGAAATGAGGCAA 4 12 16 1.1.1.4.16.12 BCBC-5B-0 14131670 P225424 Gucy2f ProximalPromoter P225424 ProximalPromoter Unique Tile chrX:137443229-137444259 (-) NM_001007576 - 70 137443299 245650 Gucy2f A930002I06 guanylate cyclase 2f MGI:105119 Mm.208511 X X F2|X 61.0 cM GUCY2F 2986 NM_172782 + 30315 137474574 237082 Nxt2 0 GGTGGCTTCAAAAGACCACATAG TGCATATCTTCTGGGCTGTCATA 4 12 17 1.1.1.4.17.12 BCBC-5B-0 14131689 P227804 Pdx1 P227804 Pdx1 Unique Tile chr3:84402189-84403176 (+) 0 CATCGCAGAGGGATAAGAAACAC GCTTCTCTTCCTCCTCAACCTTC 4 12 18 1.1.1.4.18.12 BCBC-5B-0 14131708 P226058 Dnm2 Pdx1 P226058 Pdx1 Unique Tile chr9:21208913-21209812 (+) NM_001039520 + 20908 21230720 13430 Dnm2 - dynamin 2 MGI:109547 Mm.325205 9 9 A3|9 7.0 cM DNM2 1785 NM_021888 + 46609 21162304 60507 Qtrt1 0 CTGATTCTACCAGTTAGGCGTGG GAAGATCAGGAGCTCAAGGTCAC 4 12 19 1.1.1.4.19.12 BCBC-5B-0 14131727 P003051 Blank P003051 Buffer Control Negative Blank 4 12 20 1.1.1.4.20.12 BCBC-5B-0 14131367 P210890 PufferfishHuman P210890 PufferfishHuman Unique Tile chr13:18470158-18471084 (-) 0 AGAATGCAAAGTCTGTGTCCCTT AGATACCGTGGATGGAGAAGGAT 4 13 1 1.1.1.4.1.13 BCBC-5B-0 14131386 P212012 PufferfishHuman P212012 PufferfishHuman Unique Tile chr14:21437961-21438913 (-) 0 AATCATCTCTCATCTGGCAGGAG AGAGTTCTTGCCAGCTTCTCTCA 4 13 2 1.1.1.4.2.13 BCBC-5B-0 14131405 P212762 miRNA P212762 miRNA Unique Tile chr16:77479009-77480000 (+) mmu-mir-99a 0 AAGCCAACTTCCAAAGGCTTAAT GAGGAAACACTGGCTGTAGCTTT 4 13 3 1.1.1.4.3.13 BCBC-5B-0 14131424 P213602 Adipoq Enhancer P213602 Enhancer Unique Tile chr16:23059905-23060872 (+) NM_009605 + 997 23061869 11450 Adipoq 30kDa|Acdc|Acrp30|GBP28|adipo|apM1 adiponectin, C1Q and collagen domain containing MGI:106675 Mm.3969 16 16 16.0 cM ADIPOQ 9370 NM_145480 - 16841 23043064 106344 Rfc4 0 AGTATTGATGTGGTTTTGGGGTG GGCGGACTCACATCTTATTTTTG 4 13 4 1.1.1.4.4.13 BCBC-5B-0 14131443 P214724 Lsp1 Enhancer P214724 Enhancer Unique Tile chr7:142283832-142284775 (+) NM_019391 + 2292 142281540 16985 Lsp1 Lsp-1|WP34|p50|pp52 lymphocyte specific 1 MGI:96832 Mm.234003 7 7 F5|7 69.0 cM LSP1 4046 NM_011620 + 23457 142308232 21957 Tnnt3 1 CAAACCCCAGGCTTACTCCTACT GCATTGTTCTCTGGAGAGATGCT 4 13 5 1.1.1.4.5.13 BCBC-5B-0 14131462 P215474 Ppp1r2 Enhancer P215474 Enhancer Unique Tile chr16:31197110-31198162 (-) NM_025800 - 2086 31195024 66849 Ppp1r2 0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|IPP-2 protein phosphatase 1, regulatory (inhibitor) subunit 2 MGI:1914099 Mm.194477; Mm.291593; Mm.194477; Mm.291593; Mm.194477; Mm.291593; Mm.194477; Mm.291593; Mm.194477; Mm.291593; Mm.194477; Mm.291593; Mm.194477; Mm.291593; Mm.194477; Mm.291593; Mm.194477; Mm.291593; Mm.194477; Mm.291593; Mm.194477; Mm.291593; Mm.194477; Mm.291593; Mm.194477; Mm.291593; Mm.194477; Mm.291593; Mm.194477; Mm.291593; Mm.194477; Mm.291593; Mm.194477; Mm.291593; Mm.194477; Mm.291593 16 16 B2 PPP1R2 5504 NM_007470 - 36181 31234343 11815 Apod 0 ACCTGAAAAGAAAAAGGCCACTC GGTTTTCCTCACGTTTTAGAGCA 4 13 6 1.1.1.4.6.13 BCBC-5B-0 14131481 P216596 Pot1 Enhancer P216596 Enhancer End Repeat Tile chr6:25761006-25762017 (-) NM_133931 - 1770 25759236 101185 Pot1 1500031H18Rik|AI851169 protection of telomeres 1 MGI:2141503 Mm.274589; Mm.397208; Mm.274589; Mm.397208; Mm.274589; Mm.397208; Mm.274589; Mm.397208; Mm.274589; Mm.397208; Mm.274589; Mm.397208; Mm.274589; Mm.397208; Mm.274589; Mm.397208; Mm.274589; Mm.397208; Mm.274589; Mm.397208 6 6 A3.1 POT1 25913 1 AAACTCCCAGTCCACTTCTGATG CACACACACACACACACACACAC 4 13 7 1.1.1.4.7.13 BCBC-5B-0 14131500 P217436 Enhancer P217436 Enhancer No Hits Tile 1 ccaatgccaagtgctctaaaatc tcactgtcaccagggcttaattt 4 13 8 1.1.1.4.8.13 BCBC-5B-0 14131519 P001419 Blank P001419 Buffer Control Negative Blank 4 13 9 1.1.1.4.9.13 BCBC-5B-0 14131538 P219226 Tnrc15 ProximalPromoter P219226 ProximalPromoter Unique Tile chr1:89157235-89158248 (+) NM_146112 + 25 89158223 227331 Tnrc15 2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Gigyf2|MGC38689|mKIAA0642 trinucleotide repeat containing 15 MGI:2138584 Mm.23065 1 1 D TNRC15 26058 1 GTGAAACTGAGTGGATCCCAAAC GGAGTCTCTCAGAACCCAAGTCA 4 13 10 1.1.1.4.10.13 BCBC-5B-0 14131557 P219976 Cdyl Enhancer P219976 Enhancer Unique Tile chr13:35669254-35670267 (+) NM_009881 + 1877 35667377 12593 Cdyl AI325931 chromodomain protein, Y chromosome-like MGI:1339956 Mm.29002 13 13 A3.3|13 17.0 cM CDYL 9425 0 AATCAGCTGCTTGGTATCTCCAG GTAGAGGTGCCAGTGTCAGAGGT 4 13 11 1.1.1.4.11.13 BCBC-5B-0 14131576 P220816 Spata7 ProximalPromoter P220816 ProximalPromoter Unique Tile chr12:99028318-99029288 (+) NM_178914 + 55 99029233 104871 Spata7 AI661438|B230306G18Rik|HSD3 spermatogenesis associated 7 MGI:2144877 Mm.210053 12 12 E SPATA7 55812 NM_029911 - 49328 98978990 72258 1700024D23Rik 0 GCCTCCCTATTCTGGAGGTTCTA GGTGAAAAGGAAAAGACCAGGAC 4 13 12 1.1.1.4.12.13 BCBC-5B-0 14131595 P221938 Mrc2 Enhancer P221938 Enhancer Unique Tile chr11:105109394-105110306 (+) NM_008626 + 585 105108809 17534 Mrc2 Endo180|MGC141530|mKIAA0709|uPARAP mannose receptor, C type 2 MGI:107818 Mm.235616 11 11 E1 MRC2 9902 0 TATACAACCAGAGAGCCAGAGGC GCAGTCCCGTGTCCTATACAGAG 4 13 13 1.1.1.4.13.13 BCBC-5B-0 14131614 P222688 Ssh2 ProximalPromoter P222688 ProximalPromoter Unique Tile chr11:77031346-77032336 (+) NM_177710 + 283 77032619 237860 Ssh2 BB104748|BC030940|SSH-2|mSSH-2L slingshot homolog 2 (Drosophila) MGI:2679255 Mm.1843 11 11 B5 SSH2 85464 1 AAGAGGTGGGCTTTAGAAACTGG GTAACCCTTAAGTTGCCGGAAG 4 13 14 1.1.1.4.14.13 BCBC-5B-0 14131633 P223810 BC021381 ProximalPromoter P223810 ProximalPromoter Unique Tile chr13:55559655-55560660 (-) NM_145382 - 573 55559082 212483 BC021381 MGC29235|MGC38018|MGC39032 cDNA sequence BC021381 MGI:2385851 Mm.35661 13 13 B1 FLJ10404 54540 NM_134059 - 13521 55546134 72935 Ddx41 0 CCACAATTGCTAAATAGGATGGC AGAAACCACGAGAAGAACACAGC 4 13 15 1.1.1.4.15.13 BCBC-5B-0 14131652 P224650 Eea1 ProximalPromoter P224650 ProximalPromoter Unique Tile chr10:95369338-95370245 (+) NM_001001932 + 105 95370350 216238 Eea1 A430109M19Rik|B230358H09Rik|ZFYVE2 early endosome antigen 1 MGI:2442192 Mm.210035; Mm.408385; Mm.210035; Mm.408385; Mm.210035; Mm.408385; Mm.210035; Mm.408385; Mm.210035; Mm.408385; Mm.210035; Mm.408385; Mm.210035; Mm.408385; Mm.210035; Mm.408385; Mm.210035; Mm.408385; Mm.210035; Mm.408385; Mm.210035; Mm.408385; Mm.210035; Mm.408385 10 10 C3 EEA1 8411 2 AATCTAGGCATCCCCAGTTCC CTAGTGTGAGAGACAGGCCACAG 4 13 16 1.1.1.4.16.13 BCBC-5B-0 14131671 P225400 9630041A04Rik ProximalPromoter P225400 ProximalPromoter Unique Tile chr9:101793778-101794805 (+) NM_001002768 + 62 101794743 442798 9630041A04Rik - RIKEN cDNA 9630041A04 gene MGI:3045242 Mm.119480 9 9 F1 0 TGAGGTATACTTGGATGGGCACT TGGTCTATCTCAAGATGTGGCAA 4 13 17 1.1.1.4.17.13 BCBC-5B-0 14131690 P227780 Pdx1 P227780 Pdx1 Unique Tile chr11:52382706-52383687 (+) 0 ATGGAGTTTTCATTGGCTTTCTG AAATGCAAACTGTGTCCTTGGAT 4 13 18 1.1.1.4.18.13 BCBC-5B-0 14131709 P226034 Tyrp1 Pdx1 P226034 Pdx1 End Repeat Tile chr4:80334081-80334980 (+) NM_031202 + 28621 80305460 22178 Tyrp1 TRP-1|Tyrp|b|brown|isa tyrosinase-related protein 1 MGI:98881 Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291; Mm.30438; Mm.412291 4 4 C3|4 38.0 cM TYRP1 7306 NM_026821 + 46946 80381926 52829 D4Bwg0951e 2 GGAAGAAAAGAAGGGACACTGAA ACACACACACACACACACACACA 4 13 19 1.1.1.4.19.13 BCBC-5B-0 14131728 P002410 Stratagene PCR 8 P002410 Spike Control Negative Stratagene PCR 8 4 13 20 1.1.1.4.20.13 BCBC-5B-0 14131368 P210866 6430601A21Rik ChickenHuman P210866 ChickenHuman Unique Tile chr2:113886670-113887588 (-) NM_175466 - 5285 113892873 228491 6430601A21Rik - RIKEN cDNA 6430601A21 gene MGI:2445100 Mm.132523 2 2 E4 NM_009702 - 19910 113866760 11834 Aqr 2 TGGACATAAGATGTGTCCCTGTG TGGACATGATGGATTCCTAGCTT 4 14 1 1.1.1.4.1.14 BCBC-5B-0 14131387 P211988 PufferfishHuman P211988 PufferfishHuman Unique Tile chr7:36604918-36605955 (-) 0 CCTCCATTGAAACACCATTTAGC CCCTCATCTCCCCAAATTTTAAC 4 14 2 1.1.1.4.2.14 BCBC-5B-0 14131406 P212828 Aqp8 Enhancer P212828 Enhancer Unique Tile chr7:123248378-123249278 (+) NM_007474 + 4181 123253459 11833 Aqp8 AI255744 aquaporin 8 MGI:1195271 Mm.273175 7 7 F3|7 61.0 cM AQP8 343 0 TTCTCTCATCGTAGCCTAGTGGG TGGCTTCAAACTCAGAAATCCTC 4 14 3 1.1.1.4.3.14 BCBC-5B-0 14131425 P213578 Wnt5b Enhancer P213578 Enhancer Unique Tile chr6:119431333-119432264 (-) NM_009525 - 566 119432830 22419 Wnt5b AW545702|Wnt-5b wingless-related MMTV integration site 5B MGI:98959 Mm.321818 6 6 F1|6 56.2 cM WNT5B 81029 NM_133940 + 13140 119445404 101358 Fbxl14 0 GGAGTCCTTGGTGTAATTGGTTG TGGAGAGCTAAGCTGAAAGAGGA 4 14 4 1.1.1.4.4.14 BCBC-5B-0 14131444 P214700 Tyk2 Enhancer P214700 Enhancer Unique Tile chr9:20885502-20886433 (-) NM_018793 - 3890 20881612 54721 Tyk2 JTK1 tyrosine kinase 2 MGI:1929470 Mm.20249 9 9 A3 TYK2 7297 NM_016742 - 13875 20900308 12539 Cdc37 0 TCTGGGTCAGAAGAACAAACACA AAGAGGACTGTGCCAAATTCAAG 4 14 5 1.1.1.4.5.14 BCBC-5B-0 14131463 P215450 Dcbld1 Enhancer P215450 Enhancer Unique Tile chr10:51922343-51923275 (+) NM_025705 + 280 51922063 66686 Dcbld1 4631413K11Rik discoidin, CUB and LCCL domain containing 1 MGI:1913936 Mm.62982 10 10 B3 DCBLD1 285761 NM_011282 - 38684 51883659 19886 Ros1 0 GATTGAAGTCAGAGGGTGCATTT TAGTTTGGTTGTTGAAAGGCTTG 4 14 6 1.1.1.4.6.14 BCBC-5B-0 14131482 P216290 Enhancer P216290 Enhancer No Hits Tile 0 atttgaattcaccacccccttac gaatgataccctcttctggtccc 4 14 7 1.1.1.4.7.14 BCBC-5B-0 14131501 P217412 Gcnt1 Enhancer P217412 Enhancer Unique Tile chr19:17422330-17423320 (-) NM_010265;NM_173442; - 291 17423611 14537 Gcnt1 5630400D21Rik|B130048E03|C2 GlcNAcT|IGnT glucosaminyl (N-acetyl) transferase 1, core 2 MGI:95676 Mm.244825 19 19 B|19 17.0 cM GCNT1 2650 NM_019437 + 37781 17461101 54391 Rfk 0 GTGAGGGCTTAGAAATCAGGGTT GCTTTCCATCTTTCCAGAACTGA 4 14 8 1.1.1.4.8.14 BCBC-5B-0 14131520 P001395 Blank P001395 Buffer Control Negative Blank 4 14 9 1.1.1.4.9.14 BCBC-5B-0 14131539 P219202 Nudt16 Enhancer P219202 Enhancer Unique Tile chr9:104988730-104989687 (-) NM_029385 - 205 104989892 75686 Nudt16 2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783 nudix (nucleoside diphosphate linked moiety X)-type motif 16 MGI:1922936 Mm.305810 9 9 F1 NUDT16 131870 NM_028562 - 13484 105003171 73532 1700080E11Rik 0 CAACCATCATACCCTCCTCCC TCAGGAGAGCTTAGAGAGCCAAA 4 14 10 1.1.1.4.10.14 BCBC-5B-0 14131558 P220042 B3galt1 ProximalPromoter P220042 ProximalPromoter Unique Tile chr2:67904577-67905535 (+) NM_020283 + 13031 67918566 26877 B3galt1 6330417G03Rik|beta3GalT-I|beta3GalT1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 MGI:1349403 Mm.226435; Mm.389272; Mm.393260; Mm.226435; Mm.389272; Mm.393260; Mm.226435; Mm.389272; Mm.393260; Mm.226435; Mm.389272; Mm.393260; Mm.226435; Mm.389272; Mm.393260; Mm.226435; Mm.389272; Mm.393260 2 2 C3 B3GALT1 8708 0 TAGCTTGTCCCAGCTGCTATTTC CAACCAGCTGACTGATTATCCCT 4 14 11 1.1.1.4.11.14 BCBC-5B-0 14131577 P220792 Fads3 Enhancer P220792 Enhancer Unique Tile chr19:10109109-10110025 (+) NM_021890 + 400 10108709 60527 Fads3 AI464531 fatty acid desaturase 3 MGI:1928740 Mm.253875 19 19 B FADS3 3995 NM_144538 + 23802 10085307 74760 Rab3il1 1 TTTGCTCTTTCTGACCTTTGACC AAAGAAGGAAGGCTCACACACAC 4 14 12 1.1.1.4.12.14 BCBC-5B-0 14131596 P221914 Olfr365 ProximalPromoter P221914 ProximalPromoter Unique Tile chr2:37022415-37023314 (+) NM_146662 + 63 37023251 258656 Olfr365 MOR138-1 olfactory receptor 365 MGI:3030199 Mm.377619 2 - NM_001005569 + 18185 37041499 236509 Olfr366 0 CCTTCTGAGAGGAGCATTATCCA GGTAGAGAGACCCAGCAAGATGA 4 14 13 1.1.1.4.13.14 BCBC-5B-0 14131615 P222664 Tnp1 ProximalPromoter P222664 ProximalPromoter Unique Tile chr1:72949235-72950139 (-) NM_009407 - 129 72949106 21958 Tnp1 Stp-1|TP1|Tp-1 transition protein 1 MGI:98784 Mm.425024 1 1 C3|1 38.4 cM TNP1 7141 0 AACACCCCCTCTAAAAGTCCTTG TTAAGGAAGCAGCCTCTTCAATG 4 14 14 1.1.1.4.14.14 BCBC-5B-0 14131634 P223504 Gsh2 ProximalPromoter P223504 ProximalPromoter Unique Tile chr5:75356260-75357231 (+) NM_133256 + 66 75357297 14843 Gsh2 Gsh-2 genomic screened homeo box 2 MGI:95843 Mm.218752 5 5 C3.3|5 82.0 cM GSH2 170825 NM_028850 - 29947 75326313 74277 Chic2 2 GGAGAAATTGCTGTCACCTCTGT AGTACCGCTCAGCTCAGACTCCT 4 14 15 1.1.1.4.15.14 BCBC-5B-0 14131653 P224626 Upk2 ProximalPromoter P224626 ProximalPromoter Unique Tile chr9:44205775-44206764 (-) NM_009476 - 13 44205762 22269 Upk2 AW491716|MGC129164|MGC129165|UPII uroplakin 2 MGI:98913 Mm.4453 9 9 A5.2|9 26.0 cM UPK2 7379 NM_001033469 - 13912 44191863 382074 Foxr1 0 GTGTTTCTTCCCCAACTGTTGTC CAGGATAGCTGATTTTGTCTCGG 4 14 16 1.1.1.4.16.14 BCBC-5B-0 14131672 P225376 Olfr1287 ProximalPromoter P225376 ProximalPromoter Unique Tile chr2:111249008-111250005 (+) NM_001011773 + 25 111249980 257935 Olfr1287 MOR248-15 olfactory receptor 1287 MGI:3031121 Mm.377308 2 2 E3 NM_207254 - 27220 111221788 277562 Olfr1286 0 TTTATGGAGATTGACCCAGGAAA CCACAGTCTGGTTTGTTTCTTCC 4 14 17 1.1.1.4.17.14 BCBC-5B-0 14131691 P227756 Pdx1 P227756 Pdx1 End Repeat Tile chrX:118184776-118185751 (+) 0 TAGCCTGCTTCCCTATGTACTGC CCTAGGGAAGAGACAGGGAGAAA 4 14 18 1.1.1.4.18.14 BCBC-5B-0 14131710 P226100 Slc13a3 Pdx1 P226100 Pdx1 Unique Tile chr2:165171513-165172413 (+) NM_054055 - 7119 165164394 114644 Slc13a3 NaDC-3|NaDC3|SDCT2 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 MGI:2149635 Mm.250738 2 2 H3 SLC13A3 64849 NM_001007581 - 12106 165184519 381406 2810408M09Rik 0 TGTGATGTGTTCCTGAGTGTCAA CATCCAGGACAGGAGGAACTCTA 4 14 19 1.1.1.4.19.14 BCBC-5B-0 14131729 P002386 Stratagene PCR 6 P002386 Spike Control Negative Stratagene PCR 6 4 14 20 1.1.1.4.20.14 BCBC-5B-0 14131369 P210842 Adcyap1 ChickenHuman P210842 ChickenHuman Unique Tile chr17:93521780-93522712 (+) NM_009625 + 18068 93503712 11516 Adcyap1 PACAP adenylate cyclase activating polypeptide 1 MGI:105094 Mm.3407 17 17 E5 ADCYAP1 116 0 AGGCATAGACATCGACACAGACA GCTTGTTTTCATCCCATTACTGC 4 15 1 1.1.1.4.1.15 BCBC-5B-0 14131388 P211682 PufferfishHuman P211682 PufferfishHuman Unique Tile chr13:79760661-79761627 (+) 0 AATCTCCCTACAGGCCACTTTTC AATGTGACTCGTCCTCGTTCTTC 4 15 2 1.1.1.4.2.15 BCBC-5B-0 14131407 P212804 Acvr1b Enhancer P212804 Enhancer Unique Tile chr15:101003059-101004029 (+) NM_007395 + 901 101002158 11479 Acvr1b 6820432J04|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2 activin A receptor, type 1B MGI:1338944 Mm.308467 15 15 F2|15 60.4 cM ACVR1B 91 NM_009612 + 46102 100956957 11482 Acvrl1 0 CAGGTGAGATCCTGAAAACTGCT CTGTCACAGATCTCGAAACATGG 4 15 3 1.1.1.4.3.15 BCBC-5B-0 14131426 P213554 Ucp3 Enhancer P213554 Enhancer Unique Tile chr7:100343357-100344308 (+) NM_009464 + 2764 100347072 22229 Ucp3 AI645527|Slc25a9|UCP-3 uncoupling protein 3 (mitochondrial, proton carrier) MGI:1099787 Mm.6254 7 7 E2|7 50.0 cM UCP3 7352 NM_011671 + 23137 100367445 22228 Ucp2 0 TATTTGCAAACCAGGGACCTAGA TGGAGTGATGGCTGTATCCTTCT 4 15 4 1.1.1.4.4.15 BCBC-5B-0 14131445 P214676 Rragc Enhancer P214676 Enhancer Unique Tile chr4:123420053-123421147 (+) NM_017475 + 238 123419815 54170 Rragc AU041672|Gtr2|MGC47404|RAGC|TIB929|YGR163W Ras-related GTP binding C MGI:1858751 Mm.220922; Mm.393325; Mm.220922; Mm.393325; Mm.220922; Mm.393325; Mm.220922; Mm.393325; Mm.220922; Mm.393325; Mm.220922; Mm.393325; Mm.220922; Mm.393325; Mm.220922; Mm.393325; Mm.220922; Mm.393325; Mm.220922; Mm.393325; Mm.220922; Mm.393325; Mm.220922; Mm.393325; Mm.220922; Mm.393325; Mm.220922; Mm.393325; Mm.220922; Mm.393325; Mm.220922; Mm.393325 4 4 D RRAGC 64121 NM_019660 + 12725 123407328 56309 Mycbp 1 AAATCCTCCATCCAGAAGGTGAG GCTTGCCTGATACAACCCTAACA 4 15 5 1.1.1.4.5.15 BCBC-5B-0 14131464 P215516 Luc7l Enhancer P215516 Enhancer Unique Tile chr17:25981192-25982128 (+) NM_025881;NM_028190; + 154 25982282 66978 Luc7l 1810045C04Rik|2410018D03Rik Luc7 homolog (S. cerevisiae)-like MGI:1914228 Mm.321828 17 17 B1|17 11.8 cM LUC7L 55692 NM_207217 - 9451 25971741 106581 Itfg3 0 CCCTCCGCGTACTTTTCTAGTCT TTCTTCTTCTTCCCCTTTCATCC 4 15 6 1.1.1.4.6.15 BCBC-5B-0 14131483 P216266 Maged2 Enhancer P216266 Enhancer Unique Tile chrX:146153510-146154410 (-) NM_030700 - 33 146154377 80884 Maged2 Mage-d2|ORF1 melanoma antigen, family D, 2 MGI:1933391 Mm.22575 X X F2 MAGED2 10916 1 CTTTAGTGGGGAGGGCAGTATCT TTGTTCTGCCTAGAAGCTGATCC 4 15 7 1.1.1.4.7.15 BCBC-5B-0 14131502 P217388 Hes5 Enhancer P217388 Enhancer Unique Tile chr4:153804565-153805541 (+) NM_010419 + 157 153804722 15208 Hes5 - hairy and enhancer of split 5 (Drosophila) MGI:104876 Mm.137268 4 4 E2|4 81.5 cM HES5 388585 NM_172990 + 2391 153807932 269614 Pank4 1 CAATTCACAGGCAATTTAGCGT GTCTTCCCACATCCAGAGGAAC 4 15 8 1.1.1.4.8.15 BCBC-5B-0 14131521 P218138 Abce1 ChickenHuman P218138 ChickenHuman Unique Tile chr8:82598103-82599014 (+) NM_015751 - 8673 82607687 24015 Abce1 C79080|Oabp|RLI|RNS41|Rnaseli ATP-binding cassette, sub-family E (OABP), member 1 MGI:1195458 Mm.5831 8 8 C ABCE1 6059 NM_026904 + 8877 82607891 68999 Anapc10 0 GTGGAGAGAAAACAGCCAAGAGA GAAAATGATCTTGCGCATCTACC 4 15 9 1.1.1.4.9.15 BCBC-5B-0 14131540 P218896 Olfr771 ProximalPromoter P218896 ProximalPromoter Unique Tile chr10:128563999-128564908 (-) NM_146547 - 68 128563931 258540 Olfr771 MOR114-8 olfactory receptor 771 MGI:3030605 Mm.223077 10 - NM_146266 - 13060 128577968 257666 Olfr772 0 TCTAGGACTGTGTTGGTTTGGGT CCAGAGAGCGGTAAACAGTGAAT 4 15 10 1.1.1.4.10.15 BCBC-5B-0 14131559 P220018 Enhancer P220018 Enhancer Unique Tile chr4:136933113-136934048 (+) 0 GCTGGAATGGCTACCCCTAATAC TGCCTGACACTGGTAAAGAATGA 4 15 11 1.1.1.4.11.15 BCBC-5B-0 14131578 P220768 Il17f ProximalPromoter P220768 ProximalPromoter Unique Tile chr1:20764817-20765744 (-) NM_145856 - 154 20764663 257630 Il17f IL-17F interleukin 17F MGI:2676631 Mm.222807 1 1 A4 IL17F 112744 NM_008563 - 39620 20805364 17215 Mcm3 0 CCCTACCTACACAGTGTGAGCCT TACAAAGCAGAAAGGGTCAGGAG 4 15 12 1.1.1.4.12.15 BCBC-5B-0 14131597 P221890 Slc7a3 Enhancer P221890 Enhancer Unique Tile chrX:97291387-97292300 (-) NM_007515 - 3316 97288071 11989 Slc7a3 Atrc3|CAT3|SLC7A1|SLC7A2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 MGI:1100521 Mm.5140 X X C3 SLC7A3 84889 NM_031384 - 29031 97262356 83558 Tex11 0 CAACTTGTCAGACCACTTTGCAG AAAAATTGCTGAAAGAAGACCCC 4 15 13 1.1.1.4.13.15 BCBC-5B-0 14131616 P222730 Gpx5 Enhancer P222730 Enhancer Unique Tile chr13:21303675-21304614 (-) NM_010343 - 3524 21300151 14780 Gpx5 AV379049|Arep|MGC124090|MGC124091|MGC124177 glutathione peroxidase 5 MGI:104886 Mm.1332 13 13 A2-A4|13 8.0 cM GPX5 2880 NM_145451 + 15100 21319714 75512 Gpx6 0 AAAGAATGTTGTTGGTGGAGCAT CACAGCACTCCATGTCCTCATAA 4 15 14 1.1.1.4.14.15 BCBC-5B-0 14131635 P223480 V1rh9 ProximalPromoter P223480 ProximalPromoter Duplication Tile chr13:22780916-22781829 (-) NM_134218 - 126 22780790 171252 V1rh9 - vomeronasal 1 receptor, H9 MGI:2159668 Mm.390562 13 13 A3.1 NM_001013787 - 32154 22813983 432736 RP23-75H1.7 0 TAACAGCACCCTTGTACCCACTT AGCAGGGACAGAGACAGGTAATG 4 15 15 1.1.1.4.15.15 BCBC-5B-0 14131654 P224602 Crym Enhancer P224602 Enhancer Unique Tile chr7:119988343-119989425 (-) NM_016669 - 3673 119993098 12971 Crym - crystallin, mu MGI:102675 Mm.9114 7 7 F2|7 55.0 cM CRYM 1428 NM_026458 + 5687 119995112 67928 Abca14 2 AAGTAGAGGAAAATGGGGCTCTG CATACTTTCATCAGTTCCACCCC 4 15 16 1.1.1.4.16.15 BCBC-5B-0 14131673 P225352 Olfr1182 ProximalPromoter P225352 ProximalPromoter Unique Tile chr2:88247755-88248754 (-) NM_001011535 - 20 88247775 258167 Olfr1182 MOR225-7P olfactory receptor 1182 MGI:3031016 Mm.223246 2 2 D NM_146529 + 13426 88262180 258522 Olfr1183 1 TTGGTTCTTGCATTTCTCTTGGT TATGTTCCTCTGGCATTCCATTT 4 15 17 1.1.1.4.17.15 BCBC-5B-0 14131692 P227738 Pdx1 P227738 Pdx1 Unique Tile chr2:143331031-143332004 (+) 0 TCAGAAATCAAGGCTAGGGAGGT GACATGAGTATCTGAGCCCTTGG 4 15 18 1.1.1.4.18.15 BCBC-5B-0 14131711 P226076 Odc1 Pdx1 P226076 Pdx1 Unique Tile chr12:17609051-17609951 (+) NM_013614 + 38482 17570569 18263 Odc1 MGC103389|ODC ornithine decarboxylase, structural 1 MGI:97402 Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102; Mm.287163; Mm.34102 12 12 A1.1|12 6.0 cM ODC1 4953 0 TAGGGGATAGCCTAGAGTGCTCC TTCACAGCAAGGATCACACAGAT 4 15 19 1.1.1.4.19.15 BCBC-5B-0 14131730 P002362 Stratagene PCR 4 P002362 Spike Control Negative Stratagene PCR 4 4 15 20 1.1.1.4.20.15 BCBC-5B-0 14131370 P210908 Dlx2 PufferfishHuman P210908 PufferfishHuman Unique Tile chr2:71338591-71339586 (+) NM_010054 - 7707 71347293 13392 Dlx2 AW121999|Dlx-2|Tes-1 distal-less homeobox 2 MGI:94902 Mm.3896 2 2 C2|2 44.0 cM DLX2 1746 NM_010053 + 8166 71330425 13390 Dlx1 2 CAAAACCAGAGCAAAACAAAACC GGAGGAGGCAAAAGAAAAAGAAA 4 16 1 1.1.1.4.1.16 BCBC-5B-0 14131389 P211658 PufferfishHuman P211658 PufferfishHuman Unique Tile chr3:128335910-128336822 (-) 0 ACAGATGTGTCTCCTGAGCTGTG TAGATTGTCCAGTGGGGTGAGAT 4 16 2 1.1.1.4.2.16 BCBC-5B-0 14131408 P212780 C230050L11 ChickenHuman P212780 ChickenHuman Unique Tile chr19:47329798-47330710 (+) NM_177833 + 14321 47315477 329070 C230050L11 - hypothetical protein C230050L11 Mm.127560 19 19 C3 0 AAGCATAGAATGTCAAGGGTGGA TCTAAGCAGTGAAAGCTGGAACC 4 16 3 1.1.1.4.3.16 BCBC-5B-0 14131427 P213530 Traf2 Enhancer P213530 Enhancer Unique Tile chr2:25371692-25372606 (-) NM_009422 - 2789 25368903 22030 Traf2 AI325259 Tnf receptor-associated factor 2 MGI:101835 Mm.3399 2 2 A3 TRAF2 7186 NM_021519 + 7302 25379908 59022 Edf1 0 AGTGAACATCACTGCCTGATGAA TACTCAGCAAGACAGCCACTGAG 4 16 4 1.1.1.4.4.16 BCBC-5B-0 14131446 P214370 Brd7 Enhancer P214370 Enhancer Unique Tile chr8:91250691-91251675 (-) NM_012047 - 583 91252258 26992 Brd7 BP75|CELTIX1|Ptpn13ip bromodomain containing 7 MGI:1349766 Mm.5400 8 8 C4 BRD7 29117 0 AAAAAGAGGAAGAAAGGCGAGAA ACTCATGCCTGTGTGCTTTTGTA 4 16 5 1.1.1.4.5.16 BCBC-5B-0 14131465 P215492 M6prbp1 Enhancer P215492 Enhancer Unique Tile chr17:55927307-55928269 (-) NM_025836 - 3087 55924220 66905 M6prbp1 1300012C15Rik mannose-6-phosphate receptor binding protein 1 MGI:1914155 Mm.311696 17 17 D M6PRBP1 10226 NM_029799 - 5726 55933995 76920 Arrdc5 0 CGAGAAGGTGACATTCACATCAG GAGTCTCAGGGGTAGAGGGGTAA 4 16 6 1.1.1.4.6.16 BCBC-5B-0 14131484 P216242 Tada1l Enhancer P216242 Enhancer Unique Tile chr1:168216135-168217101 (+) NM_030245 + 96 168216039 27878 Tada1l 2900026B15Rik|D1Ertd251e|Staf42 transcriptional adaptor 1 (HFI1 homolog, yeast) like MGI:1196415 Mm.100665; Mm.426210; Mm.100665; Mm.426210; Mm.100665; Mm.426210; Mm.100665; Mm.426210; Mm.100665; Mm.426210; Mm.100665; Mm.426210; Mm.100665; Mm.426210; Mm.100665; Mm.426210; Mm.100665; Mm.426210; Mm.100665; Mm.426210; Mm.100665; Mm.426210; Mm.100665; Mm.426210; Mm.100665; Mm.426210; Mm.100665; Mm.426210; Mm.100665; Mm.426210 1 1 H2|1 86.6 cM TADA1L 117143 NM_175170 - 29356 168246457 71592 Pogk 1 GGGGACAACGTGAAACAGTAAGA GTCTTATTTCCCTGGGCATCTCT 4 16 7 1.1.1.4.7.16 BCBC-5B-0 14131503 P217364 St6gal2 Enhancer P217364 Enhancer Unique Tile chr17:54921826-54922879 (+) NM_172829 + 91 54921735 240119 St6gal2 C230064G14Rik|ST6Gal II|mKIAA1877 beta galactoside alpha 2,6 sialyltransferase 2 MGI:2445190 Mm.311687 17 17 C ST6GAL2 84620 1 CAGGTAAGCTCGGGCTGTAGA CACTGCACCAGTACCATCAAGTC 4 16 8 1.1.1.4.8.16 BCBC-5B-0 14131522 P001437 Blank P001437 Buffer Control Negative Blank 4 16 9 1.1.1.4.9.16 BCBC-5B-0 14131541 P218872 Lrtm1 ProximalPromoter P218872 ProximalPromoter Unique Tile chr14:27844471-27845440 (+) NM_176920 + 20 27845420 319476 Lrtm1 A930016D02Rik|MGC118429 leucine-rich repeats and transmembrane domains 1 MGI:2442106 Mm.386754; Mm.95780; Mm.386754; Mm.95780; Mm.386754; Mm.95780; Mm.386754; Mm.95780; Mm.386754; Mm.95780; Mm.386754; Mm.95780; Mm.386754; Mm.95780; Mm.386754; Mm.95780; Mm.386754; Mm.95780; Mm.386754; Mm.95780 14 14 A3 LRTM1 57408 0 GTTTGTTTGGTTGGTTGATTGGT CTTATTTAAGCAGCCTGTCCCCT 4 16 10 1.1.1.4.10.16 BCBC-5B-0 14131560 P219994 Psg19 Enhancer P219994 Enhancer Unique Tile chr7:17958672-17959687 (-) NM_011964 - 1640 17957032 26439 Psg19 CGM7|Cea-4|Cea4|MGC117673 pregnancy specific glycoprotein 19 MGI:1347252 Mm.36878 7 7 A2|7 4.0 cM NM_007677 - 20423 17980110 26437 Psg17 0 TTCAGACATGCATTACCATCCAG TGTTGAGTCTTCCTCCTCCAAAG 4 16 11 1.1.1.4.11.16 BCBC-5B-0 14131579 P220744 Rbm11 ProximalPromoter P220744 ProximalPromoter Unique Tile chr16:75474505-75475404 (+) NM_198302 + 119 75475523 224344 Rbm11 A330018F01 RNA binding motif protein 11 MGI:2447622 Mm.273214 16 16 C3.1 RBM11 54033 NM_177142 - 24143 75450362 320355 D930038D03Rik 0 ATAATGGCAGGACCAGTTGTCAC ACTTGGCACAGTGCTTCTACCTC 4 16 12 1.1.1.4.12.16 BCBC-5B-0 14131598 P221584 4921523A10Rik ProximalPromoter P221584 ProximalPromoter Unique Tile chr17:53004310-53005235 (-) NM_173449 - 70 53004380 110332 4921523A10Rik - RIKEN cDNA 4921523A10 gene MGI:3612067 Mm.276021 17 17 C|17 32.0 cM NM_020005 + 27008 53032243 18519 Pcaf 0 CAAGTGCTGGGATTAAAGGAATG GGCAAGCAGTGAAGGAGGTAGTA 4 16 13 1.1.1.4.13.16 BCBC-5B-0 14131617 P222706 Tnfsf14 Enhancer P222706 Enhancer Unique Tile chr17:56877510-56878517 (-) NM_019418 - 995 56879512 50930 Tnfsf14 HVEM-L|HVEML|LIGHT|LTg|Ly113 tumor necrosis factor (ligand) superfamily, member 14 MGI:1355317 Mm.19131 17 17 D-E1 TNFSF14 8740 NM_009778 - 34895 56913412 12266 C3 0 GCTATTTAGCAAGTCTGAGGCCA CCATGACTAGCAGGGTGAAGAGT 4 16 14 1.1.1.4.14.16 BCBC-5B-0 14131636 P223456 4930523C11Rik ProximalPromoter P223456 ProximalPromoter Duplication Tile chr12:113937727-113938699 (+) NM_001009545 + 1327 113937372 238405 4930523C11Rik ADAM6b RIKEN cDNA 4930523C11 gene MGI:2444636 Mm.25797 12 12 F1 0 TATATTGGCTACCTGGAGGGGAT CTGAATAACATGCCTTTTGGGAG 4 16 15 1.1.1.4.15.16 BCBC-5B-0 14131655 P224578 Mon1a Enhancer P224578 Enhancer Unique Tile chr9:107746500-107747424 (+) NM_028369 + 199 107746301 72825 Mon1a 2810468K17Rik MON1 homolog A (yeast) MGI:1920075 Mm.38037 9 9 F1 MON1A 84315 NM_029169;NM_011251; - 15578 107730922 19654 Rbm6 0 ACAGGTGAGTTCGACTGCTAACC GAAGGCTGAGTGGAGCAGATAAA 4 16 16 1.1.1.4.16.16 BCBC-5B-0 14131674 P225418 Klhl11 ProximalPromoter P225418 ProximalPromoter Unique Tile chr11:100314879-100315822 (-) NM_172565 - 26007 100288872 217194 Klhl11 BC011167 kelch-like 11 (Drosophila) MGI:2388648 Mm.183320 11 11 D KLHL11 55175 NM_134037 - 28169 100343991 104112 Acly 0 CAGATCTTGCAGAGGACTTGGTT ACCCAGAACACACACCTTAGGAA 4 16 17 1.1.1.4.17.16 BCBC-5B-0 14131693 P227714 Pdx1 P227714 Pdx1 Unique Tile chr1:120947440-120948410 (+) 0 AGACCCTGCTGAGGACAGACTAA GAGTGCCATCTTCCTGCTGTATT 4 16 18 1.1.1.4.18.16 BCBC-5B-0 14131712 P226052 Npy1r Pdx1 P226052 Pdx1 Unique Tile chr7:5947907-5948806 (-) NM_010934 + 11028 5959834 18166 Npy1r Npyr|Y1-R neuropeptide Y receptor Y1 MGI:104963 Mm.391585; Mm.5112; Mm.391585; Mm.5112; Mm.391585; Mm.5112; Mm.391585; Mm.5112; Mm.391585; Mm.5112; Mm.391585; Mm.5112 8 8 B3-C2|8 33.0 cM NPY1R 4886 NM_001033249 - 14386 5933521 213011 Zfp583 0 ATGCAAAACATCCCTAATTTCCC TCAACCATCTTTCCAGTCCAGAT 4 16 19 1.1.1.4.19.16 BCBC-5B-0 14131731 P002338 Stratagene PCR 2 P002338 Spike Control Negative Stratagene PCR 2 4 16 20 1.1.1.4.20.16 BCBC-5B-0 14131371 P210884 Cpe ChickenHuman P210884 ChickenHuman Unique Tile chr8:67563766-67564755 (-) NM_013494 - 20477 67585232 12876 Cpe CPH|Cph-1|Cph1|MGC7101|R74677|fat carboxypeptidase E MGI:101932 Mm.31395 8 8 B3.1|8 32.6 cM CPE 1363 0 AGGTTCCTGATTTGTGTTTTCCA TCCACTCACACCAGAAAAGAACA 4 17 1 1.1.1.4.1.17 BCBC-5B-0 14131390 P211634 Zfp503 PufferfishHuman P211634 PufferfishHuman Unique Tile chr14:20779415-20780344 (-) NM_145459 - 1262 20778153 218820 Zfp503 AI181838|B830002A16Rik|Nolz1 zinc finger protein 503 MGI:1353644 Mm.292401 14 14 A3|14 9.0 cM ZNF503 84858 0 AGAAGAGTGCAGACTATGTCGGG TTAAAACTCAACTCCGAAGGTCG 4 17 2 1.1.1.4.2.17 BCBC-5B-0 14131409 P212756 miRNA P212756 miRNA Unique Tile chr17:55881621-55882573 (-) mmu-mir-7b 0 CTCAGTGGGTAAGAGTGGTTGCT GAAAGTCCCTCTTCTTGTGGGAT 4 17 3 1.1.1.4.3.17 BCBC-5B-0 14131428 P213596 1700034H15Rik Enhancer P213596 Enhancer Unique Tile chr1:193611312-193612221 (+) NM_001024489 - 3170 193608142 74265 1700034H15Rik - RIKEN cDNA 1700034H15 gene MGI:1921515 Mm.379232 1 1 H6 NM_009579 + 3908 193607404 22782 Slc30a1 2 GAATACATTTCTTCATGGGCAGC AAAATCAGACTGACACAGCCCTC 4 17 4 1.1.1.4.4.17 BCBC-5B-0 14131447 P214346 AY074887 Enhancer P214346 Enhancer Unique Tile chr9:54749303-54750219 (+) NM_145229 - 168 54749135 246735 AY074887 Mcpr1 cDNA sequence AY074887 MGI:3575512 Mm.422781 9 9 B NM_011966 + 308 54748995 26441 Psma4 0 CAGAGAGTCAATTCGGGAAAGTG CCTGTGAAAAGAAAACAGGATCA 4 17 5 1.1.1.4.5.17 BCBC-5B-0 14131466 P215468 Fbxo25 Enhancer P215468 Enhancer Unique Tile chr8:13907947-13908907 (+) NM_025785 + 151 13907796 66822 Fbxo25 9130015I06Rik|AI649137|Fbx25 F-box only protein 25 MGI:1914072 Mm.37950 8 8 A1.1 FBXO25 26260 NM_025556 - 17700 13890247 66423 2410022L05Rik 0 GTCCAACCTCGGTAGATGCAG ACAAAAATAGCAAGGCAGGTTCA 4 17 6 1.1.1.4.6.17 BCBC-5B-0 14131485 P216218 Slc35e3 Enhancer P216218 Enhancer Unique Tile chr10:117147637-117148656 (-) NM_029875 - 695 117149351 215436 Slc35e3 9330166G04Rik|AI481200 solute carrier family 35, member E3 MGI:2448489 Mm.256753; Mm.427587; Mm.256753; Mm.427587; Mm.256753; Mm.427587; Mm.256753; Mm.427587; Mm.256753; Mm.427587; Mm.256753; Mm.427587; Mm.256753; Mm.427587 10 10 D2 SLC35E3 55508 NM_010786 - 33928 117113709 17246 Mdm2 0 AATCTTTACTCCACACACGAGCC AGACTTCCAAGAAGTTTGTCCCC 4 17 7 1.1.1.4.7.17 BCBC-5B-0 14131504 P217058 Hnrpa3 Enhancer P217058 Enhancer Unique Tile chr2:75460147-75461242 (+) NM_198090;NM_146130; + 9 75460138 229279 Hnrpa3 2410013L13Rik|2610209F03Rik|2610510D13Rik|MGC101940|MGC37309|hnRNPA3 heterogeneous nuclear ribonucleoprotein A3 MGI:1917171 Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375; Mm.316306; Mm.331491; Mm.379375 2 2 A7.2 HNRPA3 220988 NM_010902 - 44179 75505421 18024 Nfe2l2 1 CGGTCTCAAAATGGAGGTAAAAC ACCAGAAACCCAACTACCCAAAT 4 17 8 1.1.1.4.8.17 BCBC-5B-0 14131523 P001413 Blank P001413 Buffer Control Negative Blank 4 17 9 1.1.1.4.9.17 BCBC-5B-0 14131542 P218848 Gabra3 Enhancer P218848 Enhancer Unique Tile chrX:68907747-68908689 (-) NM_008067 - 217 68908906 14396 Gabra3 Gabra-3 gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 3 MGI:95615 Mm.102286 X X A7.2-A7.3|X 28.5 cM GABRA3 2556 0 AAGCTCAGGTCTCCTTTCCAGAT CTTCAAATCAACCAAAGTGGAGG 4 17 10 1.1.1.4.10.17 BCBC-5B-0 14131561 P219970 Iqcb1 ProximalPromoter P219970 ProximalPromoter Unique Tile chr16:36746708-36747744 (+) NM_177128 + 98 36747646 320299 Iqcb1 6820449I09Rik|AV128382 IQ calmodulin-binding motif containing 1 MGI:2443764 Mm.222934 16 16 B3 IQCB1 9657 NM_134111 - 257 36747487 106389 Eaf2 1 ATCCCAGAGAACAAAACACCAAA TCGGGTCTGTTACCTCATCTCTT 4 17 11 1.1.1.4.11.17 BCBC-5B-0 14131580 P220810 1700019N19Rik Enhancer P220810 Enhancer Unique Tile chr19:58842695-58843614 (-) NM_026208 - 4038 58847652 67507 1700019N19Rik - RIKEN cDNA 1700019N19 gene MGI:1914757 Mm.27027 19 19 D2 C10orf82 143379 NM_011128 + 29682 58813013 18947 Pnliprp2 0 TAGCAGTCATCTATACCGGCCAT GTTGTTGTTTGCATCATAGCTCG 4 17 12 1.1.1.4.12.17 BCBC-5B-0 14131599 P221560 ProximalPromoter P221560 ProximalPromoter Unique Tile chr14:47531683-47532637 (+) 0 TTTGGGGCCATTTATTATGACAG CTGACAGGTCAGTATTGAGGGCT 4 17 13 1.1.1.4.13.17 BCBC-5B-0 14131618 P222682 Olfr700 ProximalPromoter P222682 ProximalPromoter Unique Tile chr7:106600086-106601170 (-) NM_146600 - 23 106600109 258593 Olfr700 MGC123707|MGC123754|MOR283-4 olfactory receptor 700 MGI:3030534 Mm.377583 7 - NM_028910 + 6622 106607792 66786 Olfr701 0 AAAGTAGCCCAGCACAAAATCTG CAAGGTAGAGTTCCAAAGCTCCA 4 17 14 1.1.1.4.14.17 BCBC-5B-0 14131637 P223432 2600001B17Rik ProximalPromoter P223432 ProximalPromoter Unique Tile chr11:102001432-102002346 (-) NM_172947 - 86 102001346 268490 2600001B17Rik 1110032E16Rik|1110059P07 RIKEN cDNA 2600001B17 gene MGI:1919592 Mm.259079 11 11 D NM_175935 + 3442 102005788 68401 G6pc3 0 TGGATATCATTGGGACTGGACTT GGGAGCCTTAGGTAGAAGAGGAA 4 17 15 1.1.1.4.15.17 BCBC-5B-0 14131656 P224272 Socs3 Enhancer P224272 Enhancer Unique Tile chr11:117783946-117784976 (-) NM_007707 - 276 117785252 12702 Socs3 CIS3|Cish3|EF-10|SOCS-3|SSI-3 suppressor of cytokine signaling 3 MGI:1201791 Mm.3468 11 11 E2 SOCS3 9021 NM_133757 + 17970 117802946 74451 Pgs1 0 CTTCGGGACTAGGTAGGAAGGAG GTGCACCAGCTTGAGTACACAGT 4 17 16 1.1.1.4.16.17 BCBC-5B-0 14131675 P225394 F730035P03Rik ProximalPromoter P225394 ProximalPromoter Unique Tile chr7:99655584-99656539 (-) NM_001002795 - 13 99655571 442845 F730035P03Rik - RIKEN cDNA F730035P03 gene MGI:3045385 Mm.244829 7 7 E2 NM_146356 + 14338 99641246 258353 Olfr521 0 GGTGCTTATATTTTATGCAGCCG AAGAGAGGAAGCAAAAGCCCTTA 4 17 17 1.1.1.4.17.17 BCBC-5B-0 14131694 P227690 Pdx1 P227690 Pdx1 Unique Tile chr18:79162458-79163425 (+) 0 GTGCACACACATGTGAGAAAACA ATGCTACAGTGTTGGAAGATGGG 4 17 18 1.1.1.4.18.17 BCBC-5B-0 14131713 P226028 Foxj3 Pdx1 P226028 Pdx1 Unique Tile chr4:119040199-119041098 (+) NM_172699 + 2580 119037619 230700 Foxj3 C330039G02Rik|DKFZp761E2211|mKIAA1041 forkhead box J3 MGI:2443432 Mm.259227 4 4 D2.1 FOXJ3 22887 NM_001004178 - 3498 119036701 433752 AA415398 2 TTTGGTTTGGTAGGCTGCTGTAT GTTGGATCTCATGAAGGCATTTC 4 17 19 1.1.1.4.19.17 BCBC-5B-0 14131732 P002404 Stratagene PCR 7 P002404 Spike Control Negative Stratagene PCR 7 4 17 20 1.1.1.4.20.17 BCBC-5B-0 14131372 P210860 Atp1b1 ChickenHuman P210860 ChickenHuman Unique Tile chr1:166290445-166291312 (-) NM_009721 - 3356 166294668 11931 Atp1b1 Atpb|Atpb-1 ATPase, Na+/K+ transporting, beta 1 polypeptide MGI:88108 Mm.4550 1 1 H2.2|1 86.8 cM ATP1B1 481 2 TTTCCATGTATGGAGAAGGCTGT GAGAAATGCTTAAGGTGGCTGAA 4 18 1 1.1.1.4.1.18 BCBC-5B-0 14131391 P211610 PufferfishHuman P211610 PufferfishHuman Unique Tile chr19:44694292-44695260 (+) 0 ATGGCAGACAGGTTGTCTATGGT CTCCAAAGAGGACTTGACCAATG 4 18 2 1.1.1.4.2.18 BCBC-5B-0 14131410 P212450 miRNA P212450 miRNA Unique Tile chr9:67038691-67039602 (-) mmu-mir-190 0 TTATTCCGAGGAGAAACAGGACA TCTTCCTAAAGGTGGCTGAAGTG 4 18 3 1.1.1.4.3.18 BCBC-5B-0 14131429 P213572 Vil2 Enhancer P213572 Enhancer Unique Tile chr17:6629406-6630450 (-) NM_009510 - 1940 6632390 22350 Vil2 AW146364|MGC107499|R75297|p81 villin 2 MGI:98931 Mm.277812 17 17 A1 VIL2 7430 0 AAATAGCCATATTGGCCACCTCT TCACAGTGGCTTGAAAGGTAACA 4 18 4 1.1.1.4.4.18 BCBC-5B-0 14131448 P214322 Slc35a1 Enhancer P214322 Enhancer Unique Tile chr4:34877243-34878157 (-) NM_011895 - 1003 34876240 24060 Slc35a1 AA408150|AI314851 solute carrier family 35 (CMP-sialic acid transporter), member 1 MGI:1345622 Mm.281885 4 4 A5 SLC35A1 10559 NM_027041 - 40908 34919065 69329 1700003M02Rik 0 GGGTTTTCCTCTCTCTTCCACAT CACTTGTTCCAGATAGCAAGGCT 4 18 5 1.1.1.4.5.18 BCBC-5B-0 14131467 P215444 5730521E12Rik Enhancer P215444 Enhancer Unique Tile chr10:52080776-52081688 (+) NM_025684 + 754 52080022 66650 5730521E12Rik - RIKEN cDNA 5730521E12 gene MGI:1913900 Mm.90950 10 10 B3 NM_053187 - 10286 52070490 94221 Gopc 0 CTGCTTGCAACACAAGTCATACC AATTCACAACAAAGTGGCAGGAT 4 18 6 1.1.1.4.6.18 BCBC-5B-0 14131486 P216284 Krt85 Enhancer P216284 Enhancer Unique Tile chr15:101830780-101831747 (-) NM_016879 - 324 101832071 53622 Krt85 AA589597|BB007925|Hb5|Krt2-18 keratin 85 MGI:1859268 Mm.25292 15 15 F2|15 58.71 cM KRT85 3891 NM_031170 - 570 101832317 16691 Krt8 0 ACTAAATCTTGGAGCACCTTCCC AACAGGCAGAGAAACTGATTTGG 4 18 7 1.1.1.4.7.18 BCBC-5B-0 14131505 P217034 Arhgap8 Enhancer P217034 Enhancer Unique Tile chr15:84509175-84510087 (+) NM_146061 + 408 84508767 109270 Arhgap8 AU043908|C030017C09Rik|C78947|MGC32512|Prr5 Rho GTPase activating protein 8 MGI:1924714 Mm.291372 15 15 E ARHGAP8 23779 NM_028455 + 37780 84547867 73167 3110043J09Rik 0 AGGGAAGTGAGTGCAACGTGT GAAACTGAGGACCAGAAGTGGAA 4 18 8 1.1.1.4.8.18 BCBC-5B-0 14131524 P001389 Blank P001389 Buffer Control Negative Blank 4 18 9 1.1.1.4.9.18 BCBC-5B-0 14131543 P218824 Tssc4 Enhancer P218824 Enhancer Unique Tile chr7:142876127-142877188 (+) NM_138631;NM_020285; + 1569 142878757 56844 Tssc4 AA241958|ESTM671070 tumor-suppressing subchromosomal transferable fragment 4 MGI:1861712 Mm.139675 7 7 F5|7 69.3 cM TSSC4 10078 NM_133790 - 13647 142862480 97423 R74862 0 GCAACATACTCACCCCCTTACTG GAGGCAGGAAAGGAACAAAGATT 4 18 10 1.1.1.4.10.18 BCBC-5B-0 14131562 P219664 3830403N18Rik ProximalPromoter P219664 ProximalPromoter Unique Tile chrX:52482406-52483387 (+) NM_027510 + 32 52483355 70691 3830403N18Rik Xlrl RIKEN cDNA 3830403N18 gene MGI:1917941 Mm.335676 X X A5 0 AAGATGTAAGTTGGGTCAGGCAA CAAGAACTTCGCTTCCTCAAAAA 4 18 11 1.1.1.4.11.18 BCBC-5B-0 14131581 P220786 Psg17 ProximalPromoter P220786 ProximalPromoter Unique Tile chr7:17980103-17981030 (-) NM_007677 - 7 17980110 26437 Psg17 Cea-2|Cea2|mmCGM5 pregnancy specific glycoprotein 17 MGI:1347250 Mm.302844 7 7 A2|7 4.0 cM NM_153760;NM_153761; + 17457 17998487 243864 Mill2 0 CTGTTAGAAGGACTCGTGGTCGT TCACTCACTTCCACTCTCAGTGC 4 18 12 1.1.1.4.12.18 BCBC-5B-0 14131600 P221536 D330050I23Rik ProximalPromoter P221536 ProximalPromoter Unique Tile chr15:60651550-60652468 (-) NM_207269 - 566 60652116 399603 D330050I23Rik BF642811 RIKEN cDNA D330050I23 gene MGI:3026924 Mm.230853; Mm.383298; Mm.230853; Mm.383298; Mm.230853; Mm.383298; Mm.230853; Mm.383298; Mm.230853; Mm.383298; Mm.230853; Mm.383298 15 15 D1 NM_177166 + 6285 60658753 320469 9930014A18Rik 0 ACTTAGGGAGCAGGTAGGATTGG AAAAGCAAAACGAACCCTAGGTC 4 18 13 1.1.1.4.13.18 BCBC-5B-0 14131619 P222658 Olfr43; Olfr403 ProximalPromoter P222658 ProximalPromoter Unique Tile chr11:74010603-74011551 (+) NM_207622;NM_146711; + 148 74011699 258706; 404316 Olfr43; Olfr403 IA7|MGC129217|MGC129218|MOR125-1|MOR125-5_p|Olfr403; MOR125-5_p|Olfr43 olfactory receptor 43; olfactory receptor 403 MGI:1333770; MGI:3030237 Mm.246537; Mm.377937 11 11 B4; 11 B5 OR1A1; 8383; NM_146708 + 39253 73971350 258703 Olfr402 0 TGGGTAAGAGCAGTTGTTGTGAA GTTGGTCCATGGCAAAAGTAGTC 4 18 14 1.1.1.4.14.18 BCBC-5B-0 14131638 P223498 Scnn1a ProximalPromoter P223498 ProximalPromoter Unique Tile chr6:125285922-125286966 (+) NM_011324 + 505 125287471 20276 Scnn1a Scnn1|mENaC sodium channel, nonvoltage-gated, type I, alpha MGI:101782 Mm.144114 6 6 F3|6 60.6 cM SCNN1A 6337 NM_010736 - 6449 125279473 17000 Ltbr 0 TTCCACTTCTTTCTAGGACAGCG CTGTGACTGGTTCCTTTCCAGTT 4 18 15 1.1.1.4.15.18 BCBC-5B-0 14131657 P224248 Gykl1 Enhancer P224248 Enhancer Unique Tile chr18:52814782-52815684 (+) NM_010293 + 3374 52819058 14625 Gykl1 AI449806|Gk-rs1 glycerol kinase-like 1 MGI:891990 Mm.32242 18 18 D1|18 26.0 cM NM_030097 + 43194 52771588 78414 1700034E13Rik 0 TCCCAGTATGGATGGAGAAAAGA GAATCCCTGAGAAAACACCAAGA 4 18 16 1.1.1.4.16.18 BCBC-5B-0 14131676 P225370 1700001J03Rik ProximalPromoter P225370 ProximalPromoter Unique Tile chr5:146489533-146490513 (-) NM_001008547 - 5 146489538 69282 1700001J03Rik - RIKEN cDNA 1700001J03 gene MGI:1916532 Mm.373573 5 5 G3 NM_028774 - 35158 146525671 74132 Rnf6 0 TTTCCTCAGGGTAGGCAATGTTA TAAGTCGGGTAAGGCTACTGCTG 4 18 17 1.1.1.4.17.18 BCBC-5B-0 14131695 P227666 Pdx1 P227666 Pdx1 Unique Tile chr13:84612284-84613249 (+) 0 GGAACTCACTTTGTAGACCAGGC ATAACCCATGCTGTCAAGGTTGT 4 18 18 1.1.1.4.18.18 BCBC-5B-0 14131714 P227162 Pdx1 P227162 Pdx1 No Hits Tile 2 ctgaaggagtgaaggaattggtg aaatggagctggaatacacagga 4 18 19 1.1.1.4.19.18 BCBC-5B-0 14131733 P002380 Stratagene PCR 5 P002380 Spike Control Negative Stratagene PCR 5 4 18 20 1.1.1.4.20.18 BCBC-5B-0 14131373 P210836 2600003E23Rik ChickenHuman P210836 ChickenHuman Unique Tile chr5:36165976-36166893 (-) NM_027373 + 43286 36210179 70292 2600003E23Rik 9630044L16Rik|AI848729|Afap|mKIAA3018 RIKEN cDNA 2600003E23 gene MGI:1917542 Mm.125167 5 5 B1 AFAP 60312 2 AAGGAACCCCATTAGCTGAGAAC CTCCTAATGCAATGTGTTTGCAC 4 19 1 1.1.1.4.1.19 BCBC-5B-0 14131392 P211676 PufferfishHuman P211676 PufferfishHuman Unique Tile chr13:38904162-38905106 (-) 2 GACCATGACAGTTGTGGCAGTAG CACCTGACAGATGTGAAGGACAG 4 19 2 1.1.1.4.2.19 BCBC-5B-0 14131411 P212426 miRNA P212426 miRNA Unique Tile chr3:157477326-157478244 (+) mmu-mir-186 0 AAACCTTGGAAGTTGCCTGTTCT GTTTCAGTGACCACTTTCCAAGC 4 19 3 1.1.1.4.3.19 BCBC-5B-0 14131430 P213548 Ube1x Enhancer P213548 Enhancer Unique Tile chrX:19819374-19820298 (+) NM_009457 + 385 19819913 22201 Ube1x A1S9|AA989744|Sbx|Ube-1 ubiquitin-activating enzyme E1, Chr X MGI:98890 Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949; Mm.1104; Mm.422949 X X A2-A3|X 5.7 cM UBE1 7317 NM_011049 + 25094 19845392 18555 Pctk1 0 GCAGTAGCCCTGTTTCTTGCTTA ATTTCGAAGCTCAAGGGAATAGG 4 19 4 1.1.1.4.4.19 BCBC-5B-0 14131449 P214298 Gadd45g Enhancer P214298 Enhancer Unique Tile chr13:51860916-51861960 (+) NM_011817 + 1726 51859190 23882 Gadd45g AI327420|C86281|CR6|DDIT2|OIG37 growth arrest and DNA-damage-inducible 45 gamma MGI:1346325 Mm.281298 13 13 A5-B GADD45G 10912 1 TCTAAAGGACGCTATCGTGGAAG TGGCCTTCTTAGAAAAACAGCAC 4 19 5 1.1.1.4.5.19 BCBC-5B-0 14131468 P215138 Sbds Enhancer P215138 Enhancer Unique Tile chr5:130536377-130537291 (-) NM_023248 - 2874 130540165 66711 Sbds 4733401P19Rik|AI836084|CGI-97|SDS Shwachman-Bodian-Diamond syndrome homolog (human) MGI:1913961 Mm.280484 5 5 G1.3 SBDS 51119 NM_178897;NM_001015876; + 3030 130540321 100929 Tyw1 0 AAAATCCAAGGTGGAGAGGAGAC TGGGAAGCACAATCAGGTTATTT 4 19 6 1.1.1.4.6.19 BCBC-5B-0 14131487 P216260 Slc14a2 Enhancer P216260 Enhancer Unique Tile chr18:78762750-78763755 (-) NM_030683;NM_207651; - 3730 78759020 27411 Slc14a2 UT-A3|UT-A5 solute carrier family 14 (urea transporter), member 2 MGI:1351653 Mm.44158 18 18 E3 SLC14A2 8170 0 AAGGAGCTGCAGGATCAATAAGA TCAATACTAGGCAAAGGGTCCAA 4 19 7 1.1.1.4.7.19 BCBC-5B-0 14131506 P217010 Prepl Enhancer P217010 Enhancer Unique Tile chr17:84997381-84998334 (-) NM_145984 - 197 84998531 213760 Prepl 2810457N15Rik|9530014L06Rik|D030028O16Rik|MGC7980|mKIAA0436 prolyl endopeptidase-like MGI:2441932 Mm.227176; Mm.259035; Mm.227176; Mm.259035; Mm.227176; Mm.259035; Mm.227176; Mm.259035; Mm.227176; Mm.259035; Mm.227176; Mm.259035; Mm.227176; Mm.259035; Mm.227176; Mm.259035; Mm.227176; Mm.259035; Mm.227176; Mm.259035; Mm.227176; Mm.259035; Mm.227176; Mm.259035; Mm.227176; Mm.259035; Mm.227176; Mm.259035 17 17 E4 PREPL 9581 0 CTCTTCTGTACGTTCTGACCCGT AAACCATGACATAAAAGGGGGAT 4 19 8 1.1.1.4.8.19 BCBC-5B-0 14131525 P218132 Abce1 ChickenHuman P218132 ChickenHuman Unique Tile chr8:82588647-82589556 (+) NM_015751 - 18131 82607687 24015 Abce1 C79080|Oabp|RLI|RNS41|Rnaseli ATP-binding cassette, sub-family E (OABP), member 1 MGI:1195458 Mm.5831 8 8 C ABCE1 6059 NM_026904 + 18335 82607891 68999 Anapc10 0 GGGCTAGAACTTAGGTGGTCGTT TGTCTATATGGGGTACCGAGTGC 4 19 9 1.1.1.4.9.19 BCBC-5B-0 14131544 P218890 1500001A10Rik ProximalPromoter P218890 ProximalPromoter Unique Tile chr5:116852894-116853793 (-) NM_026886 - 88 116852806 68955 1500001A10Rik mKIAA1853 RIKEN cDNA 1500001A10 gene MGI:1916205 Mm.146779 5 5 F KIAA1853 84530 0 GGGAGACATTGTTGTCTACTGCC GTACTTTCCTCCCTCCCCTTCTC 4 19 10 1.1.1.4.10.19 BCBC-5B-0 14131563 P219640 Lrrc19 ProximalPromoter P219640 ProximalPromoter Unique Tile chr4:94142195-94143113 (-) NM_175305 - 33 94142162 100061 Lrrc19 9130022A01Rik|AI314124|AL022954|AW261791 leucine rich repeat containing 19 MGI:2140219 Mm.26760 4 4 C5 LRRC19 64922 NM_026319 + 3731 94146844 67694 Ift74 0 CCTTGTTTCTTGCAGTCCTCACT CAAGCTGGACTTCCTTAGCAAAA 4 19 11 1.1.1.4.11.19 BCBC-5B-0 14131582 P220762 Gorasp1 ProximalPromoter P220762 ProximalPromoter Unique Tile chr9:119786269-119787318 (-) NM_028976 - 13 119786256 74498 Gorasp1 5430411C10Rik|GOLPH5|GRASP65|P65 golgi reassembly stacking protein 1 MGI:1921748 Mm.277089 9 9 F4 GORASP1 64689 NM_028735 + 34 119786303 74052 ttc21a 0 CGAATGGCTTTAAGTAGGGGAGT CTCCCGGATGTCACAGTTCTTAG 4 19 12 1.1.1.4.12.19 BCBC-5B-0 14131601 P221512 Clic1 Enhancer P221512 Enhancer Unique Tile chr17:34657565-34658590 (-) NM_033444 + 292 34658298 114584 Clic1 Clcp|G6 chloride intracellular channel 1 MGI:2148924 Mm.29524 17 17 B1 CLIC1 1192 NM_013600 - 2887 34654678 17687 Msh5 0 ACTTGCAGAAATCCTGAGAGTGG CACTGACCTGTCTGACCTTTCCT 4 19 13 1.1.1.4.13.19 BCBC-5B-0 14131620 P222352 Mgat4b ProximalPromoter P222352 ProximalPromoter Unique Tile chr11:50067694-50068596 (+) NM_145926 + 459 50069055 103534 Mgat4b AA407995 mannoside acetylglucosaminyltransferase 4, isoenzyme B MGI:2143974 Mm.86759 11 11 B1.3 MGAT4B 11282 NM_008521 - 13298 50081894 17001 Ltc4s 0 GTCATTCCAAGCAGGGTCTTTC TACAGTGGTGATGAATGAGGGTC 4 19 14 1.1.1.4.14.19 BCBC-5B-0 14131639 P223474 Hapln2 Enhancer P223474 Enhancer Unique Tile chr3:88108740-88109658 (-) NM_022031 - 3709 88113367 73940 Hapln2 4930401E20Rik|Bral1 hyaluronan and proteoglycan link protein 2 MGI:2137300 Mm.294467 3 3 F1|3 42.75 cM HAPLN2 60484 NM_025663 + 19392 88129050 66614 Gpatc4 0 AATTATATTGGGGCACCTCACCT AAGAACACCTGGCCTGGAAAT 4 19 15 1.1.1.4.15.19 BCBC-5B-0 14131658 P224224 Ptprm Enhancer P224224 Enhancer Unique Tile chr17:67257999-67258909 (-) NM_008984 - 109 67259018 19274 Ptprm KIAA4044|MGC90724|RPTPmu|mKIAA4044 protein tyrosine phosphatase, receptor type, M MGI:102694 Mm.311809 17 17 E1.1|17 38.3 cM PTPRM 5797 0 ATTTTCAGGTAAGCGAGACACCA CTCCTGGGACAGAAGATACCAGA 4 19 16 1.1.1.4.16.19 BCBC-5B-0 14131677 P225346 LOC433873 ProximalPromoter P225346 ProximalPromoter Unique Tile chr5:33945801-33946824 (+) NM_001004179 + 43 33946781 433873 LOC433873 - hypothetical gene supported by AK040173 Mm.240488 5 5 B2 NM_178390 - 411 33946212 74504 2410018C17Rik 1 AGGGACCATCATATCTCGTCAAA CCTATAGGTACCACTACCGGCCT 4 19 17 1.1.1.4.17.19 BCBC-5B-0 14131696 P227732 Ebf3 Pdx1 P227732 Pdx1 Unique Tile chr7:137170718-137171690 (+) NM_010096 - 17930 137152788 13593 Ebf3 3110018A08Rik|KIAA4201|O/E-2|mKIAA4201 early B-cell factor 3 MGI:894289 Mm.258708 7 7 F3-F4 EBF3 253738 0 CCCTCAGGGACACTACTTACGTC AGGTTGTCACCAACTGACTCTCC 4 19 18 1.1.1.4.18.19 BCBC-5B-0 14131715 P227138 Abhd2 Pdx1 P227138 Pdx1 Unique Tile chr7:79195818-79196748 (+) NM_018811 + 49010 79146808 54608 Abhd2 2210009N18Rik|LABH2|Labh-2|MGC107122 abhydrolase domain containing 2 MGI:1914344 Mm.365490; Mm.413386; Mm.365490; Mm.413386; Mm.365490; Mm.413386; Mm.365490; Mm.413386; Mm.365490; Mm.413386; Mm.365490; Mm.413386; Mm.365490; Mm.413386; Mm.365490; Mm.413386; Mm.365490; Mm.413386; Mm.365490; Mm.413386 7 7 D2 ABHD2 11057 0 GCCCCATGTTCTGTGACTTAAAC ACGCCAAGTTAGCTTTAGGAACC 4 19 19 1.1.1.4.19.19 BCBC-5B-0 14131734 P002356 Stratagene PCR 3 P002356 Spike Control Negative Stratagene PCR 3 4 19 20 1.1.1.4.20.19 BCBC-5B-0 14131735 P211952 PufferfishHuman P211952 PufferfishHuman Unique Tile chr18:81843225-81844154 (+) 0 AGGTAAAGCCAAAGGGAAGTCAC ACTTCTTCCTCCCTCTATGGGTG 5 1 1 1.1.2.1.1.1 BCBC-5B-0 14131754 P212702 miRNA P212702 miRNA Unique Tile chr4:88380530-88381575 (+) mmu-mir-31 0 TTATAATGCCCAGCCAAGAAGAA GAGAACTCTTTCACCATGGCACT 5 1 2 1.1.2.1.2.1 BCBC-5B-0 14131773 P213824 Nr6a1 Enhancer P213824 Enhancer Unique Tile chr2:38747125-38748068 (-) NM_010264 - 1629 38749697 14536 Nr6a1 1700113M01Rik|Gcnf|NCNF|RTR nuclear receptor subfamily 6, group A, member 1 MGI:1352459 Mm.16340; Mm.242728; Mm.16340; Mm.242728; Mm.16340; Mm.242728; Mm.16340; Mm.242728; Mm.16340; Mm.242728; Mm.16340; Mm.242728; Mm.16340; Mm.242728; Mm.16340; Mm.242728; Mm.16340; Mm.242728; Mm.16340; Mm.242728 2 2 B NR6A1 2649 NM_172854 + 5920 38753988 241327 Olfml2a 1 TAAGCTGACTCTAGCTCCGGGAT ACTGTTCGGGTCCTAGATCTTCC 5 1 3 1.1.2.1.3.1 BCBC-5B-0 14131792 P214664 Cugbp1 Enhancer P214664 Enhancer Unique Tile chr2:90741515-90742535 (+) NM_017368;NM_198683; + 219 90741296 13046 Cugbp1 1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|D2Wsu101e|HNAB50|NAB50 CUG triplet repeat, RNA binding protein 1 MGI:1342295 Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764 2 2 E1|2 47.5 cM CUGBP1 10658 NM_025576 - 22647 90718868 66461 Ptpmt1 2 GATGAAGGGAGGGAAAGAGAGG ATTCCATCTGAAGACACCGTCAT 5 1 4 1.1.2.1.4.1 BCBC-5B-0 14131811 P215414 Map3k7ip1 Enhancer P215414 Enhancer Unique Tile chr15:79960513-79961482 (+) NM_025609 + 105 79960408 66513 Map3k7ip1 2310012M03Rik|Tab1 mitogen-activated protein kinase kinase kinase 7 interacting protein 1 MGI:1913763 Mm.288245 15 15 E2 MAP3K7IP1 10454 NM_010795 + 39493 80000975 17309 Mgat3 1 TGTTGTCTTTAGATGGCAGAGCA CAGACCTCTTTACTCCCAGGGTT 5 1 5 1.1.2.1.5.1 BCBC-5B-0 14131830 P216536 Wfdc3 Enhancer P216536 Enhancer Unique Tile chr2:164434172-164435151 (+) NM_027961 - 300 164434472 71856 Wfdc3 1700015L13Rik|1700127F16Rik WAP four-disulfide core domain 3 MGI:1923897 Mm.330770 2 2 H3 WFDC3 140686 NM_133763 + 2068 164437219 76233 Dnttip1 0 CCACTCCCCTGGTTAACTTTTCT AAGTTGTCTTTCCAGTTCCTCCC 5 1 6 1.1.2.1.6.1 BCBC-5B-0 14131849 P217286 Zdhhc17 Enhancer P217286 Enhancer Unique Tile chr10:110412999-110413927 (-) NM_172554 - 191 110414118 320150 Zdhhc17 A230053P19Rik|BB187739|D130071N24Rik|HIP3|HYPH|Hip14|mKIAA0946 zinc finger, DHHC domain containing 17 MGI:2445110 Mm.339281 10 10 D1 ZDHHC17 23390 1 GAGGCTGAAGAAAGCGAGTCC ATCGAATGCAAAGTAACCACGTT 5 1 7 1.1.2.1.7.1 BCBC-5B-0 14131868 P218126 G430041M01Rik ChickenHuman P218126 ChickenHuman Unique Tile chr6:49181887-49182787 (+) NM_198102 - 10809 49193596 101214 G430041M01Rik AL022798 RIKEN cDNA G430041M01 gene Mm.196598; Mm.403576; Mm.196598; Mm.403576; Mm.196598; Mm.403576; Mm.196598; Mm.403576; Mm.196598; Mm.403576; Mm.196598; Mm.403576; Mm.196598; Mm.403576 6 6 B2.3 NM_173366 - 10829 49193616 68965 1500010G04Rik 0 GCAGATGGTGAACTTTCTGTGTG GGCCTTCCCATTTGGTAGATAAC 5 1 8 1.1.2.1.8.1 BCBC-5B-0 14131887 P219166 Olfr532 ProximalPromoter P219166 ProximalPromoter Unique Tile chr7:140271110-140272058 (-) NM_147026 - 19 140271091 259028 Olfr532 MOR251-1 olfactory receptor 532 MGI:3030366 Mm.377796 7 7 F4 NM_146953 - 18746 140252364 258955 Olfr531 0 AAGGCCTTGATCTGTGCACTAAC ATTTACTGTGAAACAGCTGGGGA 5 1 9 1.1.2.1.9.1 BCBC-5B-0 14131906 P219916 Gmppb ProximalPromoter P219916 ProximalPromoter Unique Tile chr9:107906452-107907435 (+) NM_177910 + 10 107907425 331026 Gmppb AI317178|E430010H19 GDP-mannose pyrophosphorylase B MGI:2660880 Mm.22554 9 9 F2 GMPPB 29925 NM_177275 + 3824 107911259 320844 Amigo3 1 GGACAGTATCCGTTCAGTATCCG AACAGAAGACGAGGAACTGGTTG 5 1 10 1.1.2.1.10.1 BCBC-5B-0 14131925 P221038 Sva ProximalPromoter P221038 ProximalPromoter Unique Tile chr6:41967112-41968046 (+) NM_009299 + 44 41968002 20939 Sva MGC129252|MGC129253 seminal vesicle antigen MGI:102785 Mm.4119 6 6 B2.1 0 CTGCCTCCAAGTCTCTGTTTGAT CTTTTGAAGAGAAGCCATGCTGT 5 1 11 1.1.2.1.11.1 BCBC-5B-0 14131944 P221878 Slc22a21 ProximalPromoter P221878 ProximalPromoter Unique Tile chr11:53823259-53824165 (-) NM_019723 - 191 53823450 56517 Slc22a21 Octn3|Slc22a9 solute carrier family 22 (organic cation transporter), member 21 MGI:1929481 Mm.154284 11 11 B1.3 NM_019687 - 47348 53871513 30805 Slc22a4 0 CAGAAGGTTGTAAGCCTCCAATG TCACCTCGTCGTAGTCAAGCATA 5 1 12 1.1.2.1.12.1 BCBC-5B-0 14131963 P222628 Gzmb Enhancer P222628 Enhancer Unique Tile chr14:55215198-55216207 (-) NM_013542 - 121 55216328 14939 Gzmb AI553453|CCP-1/C11|CCP1|Ctla-1|Ctla1 granzyme B MGI:109267 Mm.14874 14 14 D3|14 20.5 cM GZMB 3002 NM_010371 - 26471 55188727 14940 Gzmc 0 TGCTACTGCTGACCTTGTCTCTG GAATAAGGAAGCCCCCACATATC 5 1 13 1.1.2.1.13.1 BCBC-5B-0 14131982 P223750 Lhx2 Enhancer P223750 Enhancer Unique Tile chr2:38169864-38170924 (+) NM_010710 + 2392 38173316 16870 Lhx2 LH2A|Lh-2|Lim2|ap|apterous LIM homeobox protein 2 MGI:96785 Mm.142856 2 2 B LHX2 9355 1 GCAAACACACACTTCTGAACGTC TTATTCCTCGCATCTGGTTAGGA 5 1 14 1.1.2.1.14.1 BCBC-5B-0 14132001 P224500 Trpc5 Enhancer P224500 Enhancer Unique Tile chrX:139931220-139932131 (-) NM_009428 - 2234 139934365 22067 Trpc5 CCE2|MGC124500|TRP5|Trrp5 transient receptor potential cation channel, subfamily C, member 5 MGI:109524 Mm.328378 X X F2|X 63.0 cM TRPC5 7224 0 TGACACAGATTCACCTGGCTTTA GTGTCATTGGACAAGTGCTTGAG 5 1 15 1.1.2.1.15.1 BCBC-5B-0 14132020 P225340 Spag8 ProximalPromoter P225340 ProximalPromoter Unique Tile chr4:43674558-43675634 (-) NM_001007463 - 94 43674652 433700 Spag8 MH-SPAG8 sperm associated antigen 8 MGI:3056295 Mm.331569 4 4 B1 SPAG8 26206 NM_026871 - 1911 43677545 68917 Hint2 0 CTGAAAGATGGGTATCGACTTGG CTGCAAAGTTAGTCCGTTGACCT 5 1 16 1.1.2.1.16.1 BCBC-5B-0 14132039 P226664 Pdx1 P226664 Pdx1 Unique Tile chr9:4455730-4456643 (+) 0 AATACCCATGATTTAGGCCCACT ACAGAAGCAAAAATGAGGTCTGA 5 1 17 1.1.2.1.17.1 BCBC-5B-0 14132058 P226838 Pdx1 P226838 Pdx1 Unique Tile chr18:53153751-53154670 (+) 2 AAGGAAACATTTAAGCCAGGAGC TTGTGTGTGTGTGTATGTGTGTG 5 1 18 1.1.2.1.18.1 BCBC-5B-0 14132077 P002344 Stratagene PCR 1 P002344 Spike Control Negative Stratagene PCR 1 5 1 19 1.1.2.1.19.1 BCBC-5B-0 14132096 P003424 Cy3 Anchor P003424 Anchor Control Positive Cy3 Anchor 5 1 20 1.1.2.1.20.1 BCBC-5B-0 14131736 P211928 PufferfishHuman P211928 PufferfishHuman Unique Tile chr5:101391990-101392929 (-) 0 GTCTATAGAGTCCCCGAATGGCT TGTCAACCCTCATTCCAGATTTT 5 2 1 1.1.2.1.1.2 BCBC-5B-0 14131755 P212678 miRNA P212678 miRNA Unique Tile chr3:127534200-127535233 (+) mmu-mir-302 0 GCAACAGAGCTCAGGTTTTGTTT CTCATGTGAAATGTCAGGAGTGG 5 2 2 1.1.2.1.2.2 BCBC-5B-0 14131774 P213518 Titf1 Enhancer P213518 Enhancer Unique Tile chr12:57453201-57454296 (-) NM_009385 - 83 57453118 21869 Titf1 AV026640|Nkx-2.1|Nkx2-1|Nkx2.1|T/EBP|Ttf-1 thyroid transcription factor 1 MGI:108067 Mm.89972 12 12 C1-C3|12 28.0 cM TITF1 7080 0 CGTGGTGGACTCTCCTGTTAATC TTGGATGTACACGTAACGGAGTG 5 2 3 1.1.2.1.3.2 BCBC-5B-0 14131793 P214640 Ak2 Enhancer P214640 Enhancer Unique Tile chr4:128495769-128496727 (+) NM_001033966;NM_016895; + 152 128495617 11637 Ak2 Ak-2|D4Ertd220e adenylate kinase 2 MGI:87978 Mm.29460 4 4 D2.2|4 61.0 cM AK2 204 NM_172875 - 31048 128464721 242669 Adc 0 GAGCCCGAGAAGCTACAAGGT TAGTGATCATCAAAGCTTGGGGT 5 2 4 1.1.2.1.4.2 BCBC-5B-0 14131812 P215390 Mrps15 Enhancer P215390 Enhancer Unique Tile chr4:125544982-125546064 (+) NM_025544 + 3167 125549231 66407 Mrps15 1500003E24Rik|2410002B11Rik|Mprs15 mitochondrial ribosomal protein S15 MGI:1913657 Mm.195628 4 4 D2.1 MRPS15 64960 NM_172701 + 14840 125560904 230751 1810007P19Rik 0 TTTTCCTGGGCATACTTTGCTTA ACAGTCATCTTCCTGGTTTGGAG 5 2 5 1.1.2.1.5.2 BCBC-5B-0 14131831 P216512 Pycr2 Enhancer P216512 Enhancer Unique Tile chr1:182745206-182746179 (+) NM_133705 + 4223 182740983 69051 Pycr2 1810018M05Rik|Leftb|P5cr2 pyrroline-5-carboxylate reductase family, member 2 MGI:1277956 Mm.274180 1 1 H5 PYCR2 29920 NM_177099 + 15413 182729793 320202 Lefty2 0 TCTGAACTTTGGAGTCTGTGCTG TCCATGTCATAAATGCATGTGGT 5 2 6 1.1.2.1.6.2 BCBC-5B-0 14131850 P217352 Loh11cr2a Enhancer P217352 Enhancer Unique Tile chr9:38469485-38470475 (+) NM_172767 + 577 38468908 67776 Loh11cr2a 5830475I06Rik|AW552491|BCSC-1|E130119J22 loss of heterozygosity, 11, chromosomal region 2, gene A homolog (human) MGI:1915026 Mm.290950 9 9 B LOH11CR2A 4013 NM_146440 - 20538 38448947 258432 Olfr919 0 AGGTTCTTCACTCCACAAAGCAC CATTGGAAATGCATTCTAGGGAG 5 2 7 1.1.2.1.7.2 BCBC-5B-0 14131869 P218102 ChickenHuman P218102 ChickenHuman Unique Tile chr5:90310349-90311277 (+) 0 AAAAGAAGCATTTGAGGGTCACA AGCACAGTCATTACCACAGCAGA 5 2 8 1.1.2.1.8.2 BCBC-5B-0 14131888 P219142 Olfr1184 ProximalPromoter P219142 ProximalPromoter Unique Tile chr2:88286605-88287645 (+) NM_146823 + 73 88287572 258820 Olfr1184 MOR225-3 olfactory receptor 1184 MGI:3031018 Mm.377709 2 2 D NM_146529 + 24425 88262180 258522 Olfr1183 0 TACCTACTCCTGCGCATAAGGTC AAAACACCTCAATGTTCCGCTTA 5 2 9 1.1.2.1.9.2 BCBC-5B-0 14131907 P219892 Cct8 Enhancer P219892 Enhancer Unique Tile chr16:87383865-87384823 (-) NM_009840 - 200 87385023 12469 Cct8 AI132397|Cctq chaperonin subunit 8 (theta) MGI:107183 Mm.328673 16 16 C3.3 CCT8 10694 NM_024258 + 39614 87344251 74112 Usp16 0 AAGGTTCTAGAAAGGGAAGCGTG CTTTTCCAGGGATTGAACACAAG 5 2 10 1.1.2.1.10.2 BCBC-5B-0 14131926 P220732 Olfr1080 ProximalPromoter P220732 ProximalPromoter Unique Tile chr2:86354979-86356060 (-) NM_146409 - 3998 86358977 258404 Olfr1080 MOR192-1 olfactory receptor 1080 MGI:3030914 Mm.271334 2 - NM_146407 - 15227 86339752 258402 Olfr1079 0 GAAAACAGTGCAATGGTAGTCCA GTCATCAGCAGAGGCAGAAAAAT 5 2 11 1.1.2.1.11.2 BCBC-5B-0 14131945 P221854 Mtmr9 ProximalPromoter P221854 ProximalPromoter Unique Tile chr14:62497904-62498924 (-) NM_177594 - 159 62498063 210376 Mtmr9 9430075G12Rik|AA516943|AF073881|LIP-STYX|MGC54783|MTMR8|mMTMH3 myotubularin related protein 9 MGI:2442842 Mm.390684 14 14 D1 MTMR9 66036 NM_021480 - 34702 62463202 58865 Tdh 0 CTTGCAAACTTTATATGCCCCAG CTTCTCCAAGTCTCTTCCGCAC 5 2 12 1.1.2.1.12.2 BCBC-5B-0 14131964 P222604 9030625A04Rik ProximalPromoter P222604 ProximalPromoter Unique Tile chr14:75771122-75771832 (-) NM_172488 - 350 75770772 210808 9030625A04Rik - RIKEN cDNA 9030625A04 gene MGI:2445077 Mm.89278 14 14 D3 FLJ38725 144811 NM_175369 + 196 75770926 108811 4933415L06Rik 0 TCCATTTTCCTTAACAGACAGCA CTCAAGTAAGGGGACTCTGGTGA 5 2 13 1.1.2.1.13.2 BCBC-5B-0 14131983 P223726 4930511I11Rik Enhancer P223726 Enhancer Unique Tile chr17:28258553-28259525 (+) NM_026290 + 103 28258450 67645 4930511I11Rik AV041658 RIKEN cDNA 4930511I11 gene MGI:1914895 Mm.46170 17 17 A3.3 C6orf81 221481 NM_001034871 + 17550 28277075 328788 Gm749 0 CTTATACCTGCTGTACAAGGCCG TAGAATTAGGAAAAGCAAGGGGC 5 2 14 1.1.2.1.14.2 BCBC-5B-0 14132002 P224566 Col12a1 Enhancer P224566 Enhancer Unique Tile chr9:79502223-79503217 (-) NM_007730 - 1145 79504362 12816 Col12a1 AW743884 procollagen, type XII, alpha 1 MGI:88448 Mm.3819 9 9 E1|9 43.0 cM COL12A1 1303 NM_009945 - 42155 79545372 12866 Cox7a2 0 ATAGAAGACGTAGGTGACGCCTG CCATAGGCCTCATGACAAATAGC 5 2 15 1.1.2.1.15.2 BCBC-5B-0 14132021 P225316 ProximalPromoter P225316 ProximalPromoter Duplication Tile chr4:145294748-145295776 (-) 0 TCATTCTCCAAAGGGGATAGTCA ACTGCTACAACTTGAGAGGGTGG 5 2 16 1.1.2.1.16.2 BCBC-5B-0 14132040 P226640 Parp2 Pdx1 P226640 Pdx1 Unique Tile chr14:49729371-49730284 (+) NM_009632 + 388 49729896 11546 Parp2 Adprt2|Adprtl2|Aspartl2|C78626|PARP-2 poly (ADP-ribose) polymerase family, member 2 MGI:1341112 Mm.281482 14 14 C1|14 19.5 cM PARP2 10038 NM_177625 - 21925 49707446 219022 Ttc5 0 ACTCCAAAAGGATCTCGATCAAA GACCACTTCATCATGGTCATCAG 5 2 17 1.1.2.1.17.2 BCBC-5B-0 14132059 P226814 Cct3 Pdx1 P226814 Pdx1 Unique Tile chr3:88382301-88383219 (+) NM_009836 + 158 88383061 12462 Cct3 AL024092|Cctg|Tcp1-rs3|TriC-P5 chaperonin subunit 3 (gamma) MGI:104708 Mm.256034 3 3 F|3 42.9 cM CCT3 7203 NM_020003 + 27730 88410949 56700 0610031J06Rik 0 GACAGGGTTACTTCCTAGCACCC GAGAGACATCCCTTCCCTGAACT 5 2 18 1.1.2.1.18.2 BCBC-5B-0 14132078 P003045 Blank P003045 Buffer Control Negative Blank 5 2 19 1.1.2.1.19.2 BCBC-5B-0 14132097 P003376 Cy3 Anchor P003376 Anchor Control Positive Cy3 Anchor 5 2 20 1.1.2.1.20.2 BCBC-5B-0 14131737 P211904 Lbx1 PufferfishHuman P211904 PufferfishHuman Unique Tile chr19:45278979-45279879 (+) NM_010691 - 8668 45288547 16814 Lbx1 Lbx1h ladybird homeobox homolog 1 (Drosophila) MGI:104867 Mm.116815 19 19 D LBX1 10660 0 CTGAGCAGATCATAAAACCGGAC ACTATCCGCCCTTCTACACACAC 5 3 1 1.1.2.1.1.3 BCBC-5B-0 14131756 P212744 miRNA P212744 miRNA End Repeat Tile chr12:110154177-110155079 (+) mmu-mir-411 1 TGACCATGTGTCAAAGTGGATTC CACACACACACACACACACACAC 5 3 2 1.1.2.1.2.3 BCBC-5B-0 14131775 P213494 Tcf7l2 Enhancer P213494 Enhancer Unique Tile chr19:55799476-55800393 (+) NM_009333 + 3957 55795519 21416 Tcf7l2 TCF4B|TCF4E|Tcf-4|Tcf4|mTcf-4B|mTcf-4E transcription factor 7-like 2, T-cell specific, HMG-box MGI:1202879 Mm.139815 19 19 D2|19 53.0 cM TCF7L2 6934 2 GTTGAGCAGATAAGTGAGCAGCA AGCAGAATTCTTGGGGTTAGTCC 5 3 3 1.1.2.1.3.3 BCBC-5B-0 14131794 P214616 Atxn10 Enhancer P214616 Enhancer Unique Tile chr15:85164369-85165400 (+) NM_016843 + 223 85164146 54138 Atxn10 AI325283|C77170|E46|Sca10 ataxin 10 MGI:1859293 Mm.248906 15 15 E2 ATXN10 25814 0 CTAGGAAGGAGGAAGAGGAACCA ACTCATGACCTTTGGAAGAGCAG 5 3 4 1.1.2.1.4.3 BCBC-5B-0 14131813 P215366 Ccdc28b Enhancer P215366 Enhancer Unique Tile chr4:129130118-129131026 (-) NM_025455 - 3906 129126212 66264 Ccdc28b 1110002E08Rik|1810010N17Rik coiled coil domain containing 28B MGI:1913514 Mm.383215 4 4 D2.3 CCDC28B 79140 NM_198026 - 8744 129121374 230767 Iqcc 0 ACCCTCATGCGGTTCTATAGTCA AGAGCAGTCCTCAAAAACCACAC 5 3 5 1.1.2.1.5.3 BCBC-5B-0 14131832 P216206 Cyb5r3 Enhancer P216206 Enhancer Unique Tile chr15:82997521-82998434 (-) NM_029787 - 1522 82999956 109754 Cyb5r3 0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1 cytochrome b5 reductase 3 MGI:94893 Mm.22560 15 15 45.2 cM CYB5R3 1727 NM_178627 - 20419 82977102 73826 Poldip3 0 TCTTTGACTTAAGGGGCTGACAC CCCTTACCCCAACCAGTTTTAAG 5 3 6 1.1.2.1.6.3 BCBC-5B-0 14131851 P217328 D930015E06Rik Enhancer P217328 Enhancer Unique Tile chr3:84124795-84125848 (-) NM_172681 - 216 84126064 229473 D930015E06Rik mKIAA0922 RIKEN cDNA D930015E06 gene MGI:2443399 Mm.28838 3 3 F1 KIAA0922 23240 1 GGGAACTGTTGAAATCTGTGAGG GGCTAATGGCAAAGTACCACTCA 5 3 7 1.1.2.1.7.3 BCBC-5B-0 14131870 P218078 Hist1h2bf ChickenHuman P218078 ChickenHuman Unique Tile chr13:23581452-23582394 (+) NM_178195 - 203 23581655 319180 Hist1h2bf - histone 1, H2bf MGI:2448383 Mm.261672 13 - HIST1H2BF 8343 NM_178188;NM_178184; + 459 23581935 319170; 319165 Hist1h2an; Hist1h2ad 1 GTTCACAAACGAGTTCATGATGC TTTAAATGACGAAGTGGATGGCT 5 3 8 1.1.2.1.8.3 BCBC-5B-0 14131889 P219118 Ttc29 ProximalPromoter P219118 ProximalPromoter Unique Tile chr8:81108420-81109346 (+) NM_183096 + 67 81109413 73301 Ttc29 1700031F13Rik tetratricopeptide repeat domain 29 MGI:1920551 Mm.61243 8 8 C1 TTC29 83894 0 GGAGGAATTTCTGTCTTCCCTGT GCGTAGTTAGGCTAAAATGGGCT 5 3 9 1.1.2.1.9.3 BCBC-5B-0 14131908 P219958 Cntnap1 ProximalPromoter P219958 ProximalPromoter Unique Tile chr11:100991271-100992209 (+) NM_016782 + 3 100992206 53321 Cntnap1 Caspr|NCP1|Nrxn4|p190 contactin associated protein 1 MGI:1858201 Mm.8021 11 - CNTNAP1 8506 NM_146030 - 3879 100987392 217198 Plekhh3 1 TAAAGGGGCTTCTGTTTCCTTTC CCCCCAATCTCTCTCTCTCTCTC 5 3 10 1.1.2.1.10.3 BCBC-5B-0 14131927 P220708 Accn2 ProximalPromoter P220708 ProximalPromoter Unique Tile chr15:99497653-99498589 (+) NM_009597 + 162 99498751 11419 Accn2 AI843610|ASIC|ASIC1|ASIC1 beta|ASIC1a|ASICalpha|B530003N02Rik|BNaC2 amiloride-sensitive cation channel 2, neuronal MGI:1194915 Mm.172359 15 15 F3 ACCN2 41 NM_012025 - 17998 99479655 26934 Racgap1 0 CTCTGCTAATTGGATAGGGAGGG GAGTGTCTGCGAGGGTGTCTCT 5 3 11 1.1.2.1.11.3 BCBC-5B-0 14131946 P221830 Serpinb9c Enhancer P221830 Enhancer Unique Tile chr13:33165118-33166203 (-) NM_011453 - 387 33165816 20707 Serpinb9c 3830421J05Rik|NK9|Spi11|ovalbumin serine (or cysteine) peptidase inhibitor, clade B, member 9c MGI:894669 Mm.219429 13 13 A3.3|13 12.7 cM NM_011460 + 34220 33200423 20726 Serpinb9d 0 GATTGAGAGATCCGAAGTTCCCT TTATGCATGCGAAATAGATGTGG 5 3 12 1.1.2.1.12.3 BCBC-5B-0 14131965 P222580 Slc12a2 ProximalPromoter P222580 ProximalPromoter Unique Tile chr18:58002985-58004063 (+) NM_009194 + 17 58004046 20496 Slc12a2 Nkcc1|mBSC2|sy-ns solute carrier family 12, member 2 MGI:101924 Mm.4168 18 18 D3|18 32.0 cM SLC12A2 6558 2 CATAACAGGCAGTGAGTGACCAG AGAAAGAGTCACAGCGCCACTAC 5 3 13 1.1.2.1.13.3 BCBC-5B-0 14131984 P223420 Zfp414 ProximalPromoter P223420 ProximalPromoter Unique Tile chr17:33234746-33235658 (+) NM_026712 + 131 33235789 328801 Zfp414 0610030H11Rik|MGC49274 zinc finger protein 414 MGI:1915641 Mm.181488; Mm.272606; Mm.181488; Mm.272606; Mm.181488; Mm.272606; Mm.181488; Mm.272606; Mm.181488; Mm.272606; Mm.181488; Mm.272606 17 17 B2 NM_001002842 + 9169 33244827 378460 Pram1 0 CTTGCTGTAGTGCTCTGCTTCTG AAAACTGACAAAAGCTCTTCCCC 5 3 14 1.1.2.1.14.3 BCBC-5B-0 14132003 P224542 Olfr908 ProximalPromoter P224542 ProximalPromoter Unique Tile chr9:38265599-38266671 (+) NM_146872 + 67 38266604 258872 Olfr908 MOR165-2 olfactory receptor 908 MGI:3030742 Mm.377730 9 - NM_146873 + 7633 38274304 258873 Olfr909 0 CTGGTTGTCCTGGAACTCACTCT GATCAGGATCACTTGTCAATCCC 5 3 15 1.1.2.1.15.3 BCBC-5B-0 14132022 P225292 BC051142 ProximalPromoter P225292 ProximalPromoter Unique Tile chr17:34005578-34006583 (+) NM_001001177 + 15 34006568 407788 BC051142 - cDNA sequence BC051142 MGI:3039565 Mm.73205 17 17 B1 NM_201405 + 20712 33984866 240074 Btnl1 1 GGAAACTTGAAAAACAATGGCTG CTTTCCTTCGGGCTTGTTAGAAT 5 3 16 1.1.2.1.16.3 BCBC-5B-0 14132041 P226616 Lgals12 Pdx1 P226616 Pdx1 Unique Tile chr19:7673056-7673968 (+) NM_019516 - 216 7674184 56072 Lgals12 AW987437|Grip1 lectin, galactose binding, soluble 12 MGI:1929094 Mm.298242 19 19 A LGALS12 85329 NM_025731 + 5645 7679613 66727 Hrasls5 0 TGTCACAGGGTCAGCCCTTATAG GTTGATGTGGTTCCTAGAGGTGG 5 3 17 1.1.2.1.17.3 BCBC-5B-0 14132060 P226880 Pdx1 P226880 Pdx1 Unique Tile chr2:5515978-5516898 (+) 0 ATCACCCTCCTCCACTCTCTCAG GGGCATCTTGTACTCCAGGTAAA 5 3 18 1.1.2.1.18.3 BCBC-5B-0 14132079 P003021 Blank P003021 Buffer Control Negative Blank 5 3 19 1.1.2.1.19.3 BCBC-5B-0 14132098 P003232 Blank P003232 Buffer Control Negative Blank 5 3 20 1.1.2.1.20.3 BCBC-5B-0 14131738 P211598 D19Ertd737e PufferfishHuman P211598 PufferfishHuman Unique Tile chr19:60257668-60258675 (+) NM_029648 - 22484 60281159 76539 D19Ertd737e 2310065H12Rik|2610015K05Rik DNA segment, Chr 19, ERATO Doi 737, expressed MGI:1289174 Mm.290183 19 19 D3|19 57.0 cM C10orf84 63877 2 TTTAATGAAGAGCCCATCCAGAA AGTGCCTTGAAAGTGTTCGAAAG 5 4 1 1.1.2.1.1.4 BCBC-5B-0 14131757 P212720 miRNA P212720 miRNA Unique Tile chr10:93397559-93398464 (-) mmu-mir-331 0 GTTTTGGGGTCACTCATGAAAAC GTCAATTCTATCAACACCCAGCC 5 4 2 1.1.2.1.2.4 BCBC-5B-0 14131776 P213470 Srm Enhancer P213470 Enhancer Unique Tile chr4:147435560-147436502 (+) NM_009272 + 242 147435318 20810 Srm AA407669|SpdSy spermidine synthase MGI:102690 Mm.10 4 4 E2 SRM 6723 NM_001003893;NM_010767; + 9841 147446343 17175 Masp2 0 GTACCAAGACATCCTCGTCTTCC TGAACCCTCTTTTCAGACTGAGG 5 4 3 1.1.2.1.3.4 BCBC-5B-0 14131795 P214592 Mcrs1 Enhancer P214592 Enhancer Unique Tile chr15:99077612-99078518 (-) NM_016766 - 1445 99079963 51812 Mcrs1 C78274|ICP22BP|MGC103140|MGC117915|MSP58|P78 microspherule protein 1 MGI:1858420 Mm.272015; Mm.383472; Mm.272015; Mm.383472; Mm.272015; Mm.383472; Mm.272015; Mm.383472; Mm.272015; Mm.383472; Mm.272015; Mm.383472; Mm.272015; Mm.383472; Mm.272015; Mm.383472; Mm.272015; Mm.383472; Mm.272015; Mm.383472; Mm.272015; Mm.383472; Mm.272015; Mm.383472; Mm.272015; Mm.383472; Mm.272015; Mm.383472; Mm.272015; Mm.383472; Mm.272015; Mm.383472 15 15 F1 MCRS1 10445 NM_010601 + 24603 99053009 16512 Kcnh3 0 GACTGTGAGAGGATGGACAAAGG TGGGAACTAACTGCCTTCACTTT 5 4 4 1.1.2.1.4.4 BCBC-5B-0 14131814 P215432 Gngt2 Enhancer P215432 Enhancer Unique Tile chr11:95661066-95662024 (-) NM_001038664;NM_023121; + 2259 95658807 14710 Gngt2 AV096488 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 MGI:893584 Mm.46299 11 11 D|11 55.7 cM GNGT2 2793 NM_025659 - 2816 95658250 66610 Abi3 0 CTAGAAGACATTTGCCACCTGCT GCCAGGAAGAGTGTAGAATTGGA 5 4 5 1.1.2.1.5.4 BCBC-5B-0 14131833 P216182 LOC432670 Enhancer P216182 Enhancer Unique Tile chr12:74206523-74207501 (-) NM_001037717 + 626 74205897 432670 LOC432670 - similar to Na+-dependent neutral amino acid transporter Mm.290605 12 12 C3 NM_029580 - 984 74205539 76357 Trmt5 0 TAGATAGGCACAAGGGGAACAAA GTTTATTGCGGTCCTCGTACTTG 5 4 6 1.1.2.1.6.4 BCBC-5B-0 14131852 P217304 1700021K19Rik Enhancer P217304 Enhancer Unique Tile chr16:32786803-32787752 (-) NM_172615 - 334 32788086 224118 1700021K19Rik 5330403K09|mKIAA0226 RIKEN cDNA 1700021K19 gene MGI:1915160 Mm.327319; Mm.402903; Mm.327319; Mm.402903; Mm.327319; Mm.402903; Mm.327319; Mm.402903; Mm.327319; Mm.402903; Mm.327319; Mm.402903; Mm.327319; Mm.402903; Mm.327319; Mm.402903; Mm.327319; Mm.402903; Mm.327319; Mm.402903; Mm.327319; Mm.402903; Mm.327319; Mm.402903; Mm.327319; Mm.402903; Mm.327319; Mm.402903; Mm.327319; Mm.402903; Mm.327319; Mm.402903; Mm.327319; Mm.402903 16 16 B3 KIAA0226 9711 NM_027226 + 9816 32797568 69823 Fyttd1 0 CGGCATCCTGTAGAGCTACTGTT TTTGCTTCTAGTCGTGGGACTTC 5 4 7 1.1.2.1.7.4 BCBC-5B-0 14131871 P218054 Hist1h4f ChickenHuman P218054 ChickenHuman Unique Tile chr13:23557460-23558464 (+) NM_175655 - 644 23559108 319157 Hist1h4f - histone 1, H4f MGI:2448425 Mm.377875 13 - HIST1H4F 8361 NM_145713 + 4034 23562498 14957 Hist1h1d 0 TGAGGTTTTCTGAAAGCAAGCTC GCTCTTTCCCCTGTATCCTTGAT 5 4 8 1.1.2.1.8.4 BCBC-5B-0 14131890 P218812 Hbb-bh1 Enhancer P218812 Enhancer Unique Tile chr7:103718890-103719789 (-) NM_008219 - 1907 103716983 15132 Hbb-bh1 betaH1 hemoglobin Z, beta-like embryonic chain Mm.288567 7 7 E3|7 49.96 cM NM_008221 - 7216 103727005 15135 Hbb-y 0 TAAATCCCAGGACTTGTGAAGGA GTTGGACAGCCATGCTAGACTTT 5 4 9 1.1.2.1.9.4 BCBC-5B-0 14131909 P219934 NP_TR6JSE50FPA ProximalPromoter P219934 ProximalPromoter Unique Tile chr11:52001231-52002268 (-) NM_203509 - 99 52001330 272723 NP_TR6JSE50FPA GA_x5J8B7TQSKC-412-5|MGC67752 olfactory receptor NP_TR6JSE50FPA Mm.253576 11 11 B1.3 NM_207227 - 12280 51988951 211472 Olfr1373 0 GGAATGGAACCAAATTCTTAGCC CCCATGTCTTAGGTTGGACTGAG 5 4 10 1.1.2.1.10.4 BCBC-5B-0 14131928 P220684 Mettl7a Enhancer P220684 Enhancer Unique Tile chr15:100129667-100130566 (+) NM_027334 + 2284 100132850 70152 Mettl7a 2210414H16Rik|3300001H21Rik|Aam-B|UbiE1 methyltransferase like 7A MGI:1916523 Mm.220975 15 15 F3 METTL7A 25840 NM_183109 + 20797 100108870 75002 4930478A21Rik 0 AGCACAGCCAAAGAAGTCAAGAG ATCCGTAATGAGATCTGACACCC 5 4 11 1.1.2.1.11.4 BCBC-5B-0 14131947 P221806 Thrap4 Enhancer P221806 Enhancer Unique Tile chr11:98542070-98542971 (-) NM_011869 - 2486 98545457 23989 Thrap4 100kDa|AU040102|AW547152|D11Ertd307e|DRIP100|Gse2|KIAA0130|Pparb2|Pparbp2|R75526|Trap100 thyroid hormone receptor associated protein 4 MGI:1344385 Mm.246493 11 11 D|11 56.5 cM THRAP4 9862 NM_178060 + 14991 98557962 21833 Thra 0 TACTCGGCTCCAGAAGTAACAGG TTCTACAACCCCAGCACATACCT 5 4 12 1.1.2.1.12.4 BCBC-5B-0 14131966 P222646 Wtap ProximalPromoter P222646 ProximalPromoter Unique Tile chr17:12835607-12836518 (-) NM_175394 - 129 12835478 60532 Wtap 2810408K05Rik|9430038B09Rik Wilms' tumour 1-associating protein MGI:1926395 Mm.275521; Mm.392668; Mm.275521; Mm.392668; Mm.275521; Mm.392668; Mm.275521; Mm.392668; Mm.275521; Mm.392668; Mm.275521; Mm.392668; Mm.275521; Mm.392668; Mm.275521; Mm.392668; Mm.275521; Mm.392668; Mm.275521; Mm.392668; Mm.275521; Mm.392668; Mm.275521; Mm.392668; Mm.275521; Mm.392668; Mm.275521; Mm.392668; Mm.275521; Mm.392668; Mm.275521; Mm.392668; Mm.275521; Mm.392668 17 17 A1 WTAP 9589 NM_013671 + 14252 12850770 20656 Sod2 0 AGAGCCAGAGCATGAAATTCAAA CAGTCTCACAGCTCAGGATGCTT 5 4 13 1.1.2.1.13.4 BCBC-5B-0 14131985 P223396 MGC48079 ProximalPromoter P223396 ProximalPromoter Duplication Tile chr7:24433096-24434144 (-) NM_177593 - 46 24433050 210155 MGC48079 - hypothetical protein MGC48079 Mm.425399 7 7 A3 NM_199150 + 15078 24418018 232972 BC049730 2 GCTCATATGTTCTGGGGTCAAAC CCTATCACAGCTCAGCAGAACAA 5 4 14 1.1.2.1.14.4 BCBC-5B-0 14132004 P224518 Sirt6 ProximalPromoter P224518 ProximalPromoter Unique Tile chr10:81030800-81031700 (-) NM_181586 - 113 81030687 50721 Sirt6 2810449N18Rik sirtuin 6 (silent mating type information regulation 2, homolog) 6 (S. cerevisiae) MGI:1354161 Mm.131825; Mm.25643; Mm.131825; Mm.25643; Mm.131825; Mm.25643; Mm.131825; Mm.25643 10 10 C1|10 43.0 cM SIRT6 51548 NM_027480 + 975 81032675 70615 Ankrd24 0 ACCAGCAGCAGAGTAGAGGTGAC TGGAGGTGAAAAACAGCATTCTT 5 4 15 1.1.2.1.15.4 BCBC-5B-0 14132023 P225268 Gm1082 ProximalPromoter P225268 ProximalPromoter Unique Tile chr7:30222884-30223803 (+) NM_001004161 + 78 30223881 381868 Gm1082 - gene model 1082, (NCBI) MGI:2685928 Mm.297831 7 7 B1 NM_178252 - 15582 30239385 233071 Snx26 2 TCTTCCAGAGGTCCTGAGTTCAA AGCGAAGGTTCAGAGATGTTGAC 5 4 16 1.1.2.1.16.4 BCBC-5B-0 14132042 P226790 Tdrd7 Pdx1 P226790 Pdx1 Unique Tile chr4:46036151-46037068 (+) NM_146142 + 27590 46008561 100121 Tdrd7 5730495N10Rik|AI447470|MGC36668|PCTAIRE2BP tudor domain containing 7 MGI:2140279 Mm.275413 4 4 B1 TDRD7 23424 NM_021883 + 44997 46082065 21916 Tmod1 0 AGCCCACTGTTTTCCAGTTTCTT CAATTCAAAGTTCTGGATCTGGC 5 4 17 1.1.2.1.17.4 BCBC-5B-0 14132061 P226856 Pdx1 P226856 Pdx1 Unique Tile chr5:100597786-100598705 (+) 0 AGTGAGCCTGATCAGAGGACAAG AAGCAACCCTCCAGAAAGAAAAG 5 4 18 1.1.2.1.18.4 BCBC-5B-0 14132080 P002997 Blank P002997 Buffer Control Negative Blank 5 4 19 1.1.2.1.19.4 BCBC-5B-0 14132099 P003232 Blank P003232 Buffer Control Negative Blank 5 4 20 1.1.2.1.20.4 BCBC-5B-0 14131739 P211574 PufferfishHuman P211574 PufferfishHuman Unique Tile chr6:16677210-16678184 (-) 1 ACACACACACACACACACACACA ATAAACGATTGTTTCCTGCCAGA 5 5 1 1.1.2.1.1.5 BCBC-5B-0 14131758 P212696 miRNA P212696 miRNA Unique Tile chr4:120270879-120271802 (-) mmu-mir-30c-1 0 TTAGCCAGAGGATGGTGGTTTTA TCATGGGGTCATAGGTTCTGACT 5 5 2 1.1.2.1.2.5 BCBC-5B-0 14131777 P213446 Slc12a2 Enhancer P213446 Enhancer Unique Tile chr18:57999839-58000865 (+) NM_009194 + 3181 58004046 20496 Slc12a2 Nkcc1|mBSC2|sy-ns solute carrier family 12, member 2 MGI:101924 Mm.4168 18 18 D3|18 32.0 cM SLC12A2 6558 2 TCTGGAACTCAAGATCCTTCTGC GAGAGAGAACCTGAGCCAGTGAG 5 5 3 1.1.2.1.3.5 BCBC-5B-0 14131796 P214286 Adamts5 Enhancer P214286 Enhancer Unique Tile chr16:85790315-85791304 (-) NM_011782 - 835 85789480 23794 Adamts5 ADAM-TS5|ADAMTS1|ADAMTS11|AI481094|ASMP-2|implantin a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2) MGI:1346321 Mm.112933; Mm.393688; Mm.112933; Mm.393688; Mm.112933; Mm.393688; Mm.112933; Mm.393688; Mm.112933; Mm.393688; Mm.112933; Mm.393688; Mm.112933; Mm.393688; Mm.112933; Mm.393688; Mm.112933; Mm.393688; Mm.112933; Mm.393688 16 16 C3.3|16 62.0 cM ADAMTS5 11096 2 GCTGACAGTGAGTGGCTGACTTA CAATTTCAACAATTCGTCACTGC 5 5 4 1.1.2.1.4.5 BCBC-5B-0 14131815 P215408 Aamp Enhancer P215408 Enhancer Unique Tile chr1:74214065-74215018 (+) NM_146110 - 2158 74217176 227290 Aamp AU040907|Aamp-rs|MGC30660 angio-associated migratory protein MGI:107809 Mm.379371 1 1 C3 AAMP 14 NM_174985 + 2259 74211806 227289 Gpbar1 0 CAGAGACGTACAACACCATCCAG GCTGTGGTAGGGTATGAAGATGG 5 5 5 1.1.2.1.5.5 BCBC-5B-0 14131834 P216158 Cul2 Enhancer P216158 Enhancer Unique Tile chr18:3383139-3384156 (+) NM_029402 + 111 3383028 71745 Cul2 1300003D18Rik|4932411N15Rik|AI327301|KIAA4106|mKIAA4106 cullin 2 MGI:1918995 Mm.291707 18 18 A1 CUL2 8453 1 GGCATTGTTTTACTAGGCTCCCT CACACACACACACACACACCTTT 5 5 6 1.1.2.1.6.5 BCBC-5B-0 14131853 P217280 Sema6d Enhancer P217280 Enhancer Unique Tile chr2:124303226-124304298 (+) NM_199240;NM_199239;NM_199241;NM_199238;NM_172537; + 784 124302442 214968 Sema6d 1110067B02Rik|AA409156|D330011G23|Sema6D-1|Sema6D-2|Sema6D-4|Sema6D-5|Sema6D-6|mKIAA1479 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D MGI:2387661 Mm.330536 2 2 F1 SEMA6D 80031 1 AATCTCCAAGGCTTTTCTTCCAG CATCCGAAGAGTGAAAAATGACC 5 5 7 1.1.2.1.7.5 BCBC-5B-0 14131872 P218120 Igf2bp3 ChickenHuman P218120 ChickenHuman Unique Tile chr6:49143982-49144958 (+) NM_023670 - 188 49144170 140488 Igf2bp3 2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3 insulin-like growth factor 2 mRNA binding protein 3 MGI:1890359 Mm.281018 6 6 B2.3|6 20.3 cM IGF2BP3 10643 NM_198102 - 48638 49193596 101214 G430041M01Rik 1 TAGCGTCCTTGAAGACACTTTCC GTTCTACTTTCCCCGGTCATCAG 5 5 8 1.1.2.1.8.5 BCBC-5B-0 14131891 P218788 Olfr638 ProximalPromoter P218788 ProximalPromoter Unique Tile chr7:103876099-103877130 (+) NM_147120 + 51 103877079 259124 Olfr638 MOR5-1 olfactory receptor 638 MGI:3030472 Mm.159801 7 - NM_147084 - 9391 103886521 259088 Olfr639 1 CCTGTGACACATTGGACATTCAT AGGGCCATGAGTGGTGTTAGTTA 5 5 9 1.1.2.1.9.5 BCBC-5B-0 14131910 P219910 D7Wsu128e ProximalPromoter P219910 ProximalPromoter Unique Tile chr7:121857650-121858606 (+) NM_138589 + 255 121858351 28018 D7Wsu128e AI467302|D7Wsu105e|Ubph DNA segment, Chr 7, Wayne State University 128, expressed MGI:107301 Mm.282122 7 7 F2|7 59.0 cM UBPH 56061 NM_026140 - 395 121858211 67417 3230401I01Rik 1 CGGGTCTTCTTGACACTTGTTCT ATGATTGTGTACAACACCCACCA 5 5 10 1.1.2.1.10.5 BCBC-5B-0 14131929 P220660 Olfr727 ProximalPromoter P220660 ProximalPromoter Unique Tile chr14:49047626-49048589 (+) NM_146319 + 60 49048529 258316 Olfr727 MOR246-2 olfactory receptor 727 MGI:3030561 Mm.223012 14 14 C1 OR4K14 122740 NM_001011809 - 13999 49062588 258039 Olfr728 0 CTGTGCAGGAAAGAAAACCATTC TGAACTAGACAGACCCAACAGCA 5 5 11 1.1.2.1.11.5 BCBC-5B-0 14131948 P221500 V1re2 ProximalPromoter P221500 ProximalPromoter Unique Tile chr17:20391343-20392266 (+) NM_134191 + 62 20392204 171225 V1re2 - vomeronasal 1 receptor, E2 MGI:2159616 Mm.377184 17 17 A3.2 NM_134195 + 47530 20439796 171229 V1re6 1 CCTCCAAGAGTTCTTTACCCCAT AGAATACCAAGTGCCGTCTGAAG 5 5 12 1.1.2.1.12.5 BCBC-5B-0 14131967 P222622 Lag3 Enhancer P222622 Enhancer Unique Tile chr6:124879021-124880105 (-) NM_008479 - 1697 124877324 16768 Lag3 CD223|LAG-3|Ly66 lymphocyte-activation gene 3 MGI:106588 Mm.4528 6 6 F2 LAG3 3902 NM_001002785 + 2376 124882481 442825 A230083G16Rik 0 ACTTGTTTCTGGCTCCTCAGATG TCCTGTTTCTATCTGCCTGGTTC 5 5 13 1.1.2.1.13.5 BCBC-5B-0 14131986 P223372 Tuba3 Enhancer P223372 Enhancer Unique Tile chr6:125252926-125253990 (-) NM_009446 - 1276 125251650 22144 Tuba3 AI528779|MGC107295|M[a]3 tubulin, alpha 3 MGI:1095406 Mm.287784 6 6 F3 NM_010736 - 25483 125279473 17000 Ltbr 0 AAACAGTGTGGCTTACAGTGGGT TTATTGTTGGGGATCTGATTTGG 5 5 14 1.1.2.1.14.5 BCBC-5B-0 14132005 P224494 ProximalPromoter P224494 ProximalPromoter Unique Tile chr7:144547877-144548967 (-) 1 GTTGTCAACAAATGACTCTCCCC GTCCTGCATGATGTGTTCGCT 5 5 15 1.1.2.1.15.5 BCBC-5B-0 14132024 P225334 AI316807 ProximalPromoter P225334 ProximalPromoter Unique Tile chr8:23942460-23943383 (-) NM_001012667 - 60 23942400 102032 AI316807 BG694986|EST-c39 expressed sequence AI316807 MGI:2142501 Mm.378231 8 8 A2 C8orf40 114926 NM_011394 + 126 23942334 20516 Slc20a2 1 CGCCTATGTAAGAAGTTCCCCTT CGAGAAGCCAGGTTTTGTTATTG 5 5 16 1.1.2.1.16.5 BCBC-5B-0 14132043 P226766 Ssbp4 Pdx1 P226766 Pdx1 Unique Tile chr8:73539585-73540501 (+) NM_133772 - 2323 73537262 76900 Ssbp4 1210002E11Rik|AW743380|Sspb4 single stranded DNA binding protein 4 MGI:1924150 Mm.6667 8 8 C1 SSBP4 170463 NM_153074 + 5331 73545832 211228 Lrrc25 0 CCACATGATGGAAACTGTTGACT GGCTTTTGCACCCAGTAACTCTA 5 5 17 1.1.2.1.17.5 BCBC-5B-0 14132062 P226832 Pdx1 P226832 Pdx1 Unique Tile chr10:5386026-5386945 (+) 0 TCTCCTCGTCCCTACTTCCTTCT GGAAGCAGCTGTTTAATGCTGTA 5 5 18 1.1.2.1.18.5 BCBC-5B-0 14132081 P002973 Blank P002973 Buffer Control Negative Blank 5 5 19 1.1.2.1.19.5 BCBC-5B-0 14132100 P003136 Blank P003136 Buffer Control Negative Blank 5 5 20 1.1.2.1.20.5 BCBC-5B-0 14131740 P211550 PufferfishHuman P211550 PufferfishHuman Unique Tile chr14:97722515-97723460 (+) 0 GGGGCTTGAAAGAGAAAAGGATA GCTCTATGAGTGAATAGGGCAGC 5 6 1 1.1.2.1.1.6 BCBC-5B-0 14131759 P212672 miRNA P212672 miRNA Unique Tile chr11:86925978-86927016 (+) mmu-mir-301 0 AGCTGGGACAGTCTGAAAGAAGA AGCAACCCGTTAAAAACACAGAA 5 6 2 1.1.2.1.2.6 BCBC-5B-0 14131778 P213512 Tgfbr2 Enhancer P213512 Enhancer Unique Tile chr9:116022577-116023478 (-) NM_009371;NM_029575; - 257 116023735 21813 Tgfbr2 1110020H15Rik|AU042018|DNIIR|RIIDN|TbetaR-II|TbetaRII transforming growth factor, beta receptor II MGI:98729 Mm.172346 9 9 F3|9 69.0 cM TGFBR2 7048 0 CAAGATCTCTCGCAAAAGAGCAG TGCAACACGATCCAAAACTCTTA 5 6 3 1.1.2.1.3.6 BCBC-5B-0 14131797 P214262 Vim Enhancer P214262 Enhancer Unique Tile chr2:13493461-13494376 (+) NM_011701 + 1294 13492167 22352 Vim MGC102095 vimentin MGI:98932 Mm.268000 2 2 A2|2 7.0 cM VIM 7431 NM_010067 - 30944 13462517 13434 Dnmt2 0 AGACTTCTTTTTCACATGCAGCC AAACAAACAAATCCTCCCTCCAT 5 6 4 1.1.2.1.4.6 BCBC-5B-0 14131816 P215384 Ergic3 Enhancer P215384 Enhancer Unique Tile chr2:155694702-155695655 (+) NM_025516 + 3891 155699546 66366 Ergic3 2310015B14Rik|AV318804|CGI-54|D2Ucla1|DKFZp547A2190|NY-BR-84|Sdbcag84 ERGIC and golgi 3 MGI:1913616 Mm.141276 2 2 H2|2 92.0 cM ERGIC3 51614 NM_008383 + 41290 155653412 16328 Cep250 0 AGGCAGAAACTGACTGAATCTGG TCTGATATAATGAGTGGCGCTGA 5 6 5 1.1.2.1.5.6 BCBC-5B-0 14131835 P216134 Ddit4 Enhancer P216134 Enhancer Unique Tile chr10:59348200-59349186 (-) NM_029083 - 1073 59347127 74747 Ddit4 5830413E08Rik|AA415483|REDD1|Rtp801|dig2 DNA-damage-inducible transcript 4 MGI:1921997 Mm.21697 10 10 B3 DDIT4 54541 NM_026937 + 49009 59398195 69090 Ascc1 0 TTTCATCTTACCACCCTATCCGA CTTTGGAAAAGTCCAAATGCAAG 5 6 6 1.1.2.1.6.6 BCBC-5B-0 14131854 P216974 Rnu3ip2 Enhancer P216974 Enhancer Unique Tile chr9:106338737-106339755 (-) NM_145620 + 3328 106335409 27966 Rnu3ip2 55kDa|D19435|D9Wsu10e|MGC25949|U3-55k RNA, U3 small nucleolar interacting protein 2 MGI:2384313 Mm.239997 9 9 F1|9 56.0 cM RNU3IP2 9136 NM_145619 - 3985 106334752 235587 Parp3 0 TTTTGGTGTCTTGAGACAGGGTT ACAGTTCTAGTGGCCAGATGAGG 5 6 7 1.1.2.1.7.6 BCBC-5B-0 14131873 P218096 ChickenHuman P218096 ChickenHuman Unique Tile chr5:90074122-90075057 (+) 0 CCATCCATTTGCCTACAAAACTC TCTCAGTGACAGACTGAAGCACC 5 6 8 1.1.2.1.8.6 BCBC-5B-0 14131892 P218764 Tmem14a Enhancer P218764 Enhancer Unique Tile chr1:21206083-21207113 (+) NM_029398 + 2302 21203781 75712 Tmem14a 5730496E24Rik|C85783|PTD011 transmembrane protein 14A MGI:1922962 Mm.14719 1 1 A4 TMEM14A 28978 NM_010356 + 27788 21234901 14859 Gsta3 0 TCATCAGATGTCCTGGTGCTAGA GCTGAACAAGGTGAACAACAGTG 5 6 9 1.1.2.1.9.6 BCBC-5B-0 14131911 P219886 2200001I15Rik ProximalPromoter P219886 ProximalPromoter Unique Tile chr14:33184474-33185424 (-) NM_183278 - 11 33184485 69134 2200001I15Rik - RIKEN cDNA 2200001I15 gene MGI:1916384 Mm.27156 14 14 B NM_011430 - 18295 33203719 20618 Sncg 0 GGAGAAACTGAGGCTTTGTTTGA GTAAAGCTTGCTCCTCAGACTGG 5 6 10 1.1.2.1.10.6 BCBC-5B-0 14131930 P220726 Med25 ProximalPromoter P220726 ProximalPromoter Unique Tile chr7:44760595-44761544 (-) NM_029365 - 144 44760451 75613 Med25 2610034E13Rik|2610529E18Rik|ESTM2|X83308 mediator of RNA polymerase II transcription, subunit 25 homolog (yeast) MGI:1922863 Mm.157778 7 7 B2|7 7.0 cM MED25 81857 NM_133949 - 22765 44737830 84113 Ptov1 1 GGCAATGTCTCAGTTGCTAACCT GAAACTCTCAGAATGGGCACAAC 5 6 11 1.1.2.1.11.6 BCBC-5B-0 14131949 P221476 Smg6 Enhancer P221476 Enhancer Unique Tile chr11:74745773-74746693 (-) NM_001002764 + 3707 74742066 103677 Smg6 AI317223|AU041178|MGC7717 Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans) MGI:2144117 Mm.288460 11 11 B5 SMG6 23293 NM_013761 - 3875 74741898 27364 Srr 0 CTACTGGGTACTGCAGAGGGCTA CAAAGAAGGTGGCTGATGACTCT 5 6 12 1.1.2.1.12.6 BCBC-5B-0 14131968 P222598 Nlgn1 ProximalPromoter P222598 ProximalPromoter Unique Tile chr3:26522631-26523697 (-) NM_138666 - 351 26522982 192167 Nlgn1 6330415N05Rik|BB179718|MGC107366|mKIAA1070 neuroligin 1 MGI:2179435 Mm.316080 3 3 A3 NLGN1 22871 0 ATCCCTGTTCTCTACCTTGCTCC ACTCAGTGTCTCACTCCTCTCGG 5 6 13 1.1.2.1.13.6 BCBC-5B-0 14131987 P223348 Robo1 ProximalPromoter P223348 ProximalPromoter Unique Tile chr16:72545532-72546543 (+) NM_019413 + 30 72546573 19876 Robo1 AW494633|AW742721|DUTT1 roundabout homolog 1 (Drosophila) MGI:1274781 Mm.310772 16 16 C3.1 ROBO1 6091 0 GGACCTGGAGGATTTTGAAGTCT AACAAAGAGCCTAAACCGAGGAG 5 6 14 1.1.2.1.14.6 BCBC-5B-0 14132006 P224188 Ugt1a7c ProximalPromoter P224188 ProximalPromoter Unique Tile chr1:89925233-89926243 (+) NM_201642 + 5 89926248 394432 Ugt1a7c A10'|A13|Ugt1a10 UDP glucuronosyltransferase 1 family, polypeptide A7C MGI:3032636 Mm.300095 1 1 D NM_201410 + 8204 89934447 394435 Ugt1a6b 0 GTTACAAAATGCAAGCAGAACCC AGAGGAAGTGTGAGCCAGAGAGA 5 6 15 1.1.2.1.15.6 BCBC-5B-0 14132025 P225310 Add1 ProximalPromoter P225310 ProximalPromoter Unique Tile chr5:34917191-34918102 (+) NM_001024458;NM_013457; + 76 34918178 11518 Add1 AI256389 adducin 1 (alpha) MGI:87918 Mm.289106 5 5 B2|5 20.0 cM ADD1 118 NM_026660 - 35869 34953971 68294 0610009O03Rik 0 GAAGAGCCCCAAGCTCTTTCTAC GAAGTGCATGCTTCTATGTGGTG 5 6 16 1.1.2.1.16.6 BCBC-5B-0 14132044 P226742 Mtdh Pdx1 P226742 Pdx1 Unique Tile chr15:34029020-34029936 (+) NM_026002 + 1713 34027307 67154 Mtdh 2610103J23Rik|3D3|3D3/Lyric|AV353288|D8Bwg1112e|Lyric Metadherin MGI:1914404 Mm.130883 15 15 B3.3|15 53.5 cM MTDH 92140 0 TAGTGTAGTGGTGGTGGTGGATG AACCAAAGTTTCAGGGCCATAAC 5 6 17 1.1.2.1.17.6 BCBC-5B-0 14132063 P226808 Jag1 Pdx1 P226808 Pdx1 Unique Tile chr2:136774987-136775905 (+) NM_013822 - 31833 136807738 16449 Jag1 Headturner|Htu|Ser-1|Serrate-1|slalom jagged 1 MGI:1095416 Mm.22398 2 2 F3|2 77.0 cM JAG1 182 0 CAGTGGTCTTCCTGTATTCGGTC TGATAACTACCATGGGTTTGCTT 5 6 18 1.1.2.1.18.6 BCBC-5B-0 14132082 P003039 Blank P003039 Buffer Control Negative Blank 5 6 19 1.1.2.1.19.6 BCBC-5B-0 14132101 P003136 Blank P003136 Buffer Control Negative Blank 5 6 20 1.1.2.1.20.6 BCBC-5B-0 14131741 P211526 PufferfishHuman P211526 PufferfishHuman Unique Tile chr8:92749033-92749997 (-) 2 AAGCTACAGCAGTTAGTGGTGGC GGCCAAAGGAGCTGTTCTTATTT 5 7 1 1.1.2.1.1.7 BCBC-5B-0 14131760 P212366 miRNA P212366 miRNA Unique Tile chr7:44986583-44987502 (+) mmu-mir-150 0 GTTGAGGCAACAAGGTCAGAAGT CTCCTCCTTTTTGGGTTCTTTGT 5 7 2 1.1.2.1.2.7 BCBC-5B-0 14131779 P213488 Slc6a6 Enhancer P213488 Enhancer Unique Tile chr6:91650249-91651220 (+) NM_009320 + 604 91649645 21366 Slc6a6 AA589629|C80501|Taut solute carrier family 6 (neurotransmitter transporter, taurine), member 6 MGI:98488 Mm.247352 6 6 D1|6 38.2 cM SLC6A6 6533 0 ACACACACACACACACATCTTGC CTTGCTAAAACACCTCCCTCTCA 5 7 3 1.1.2.1.3.7 BCBC-5B-0 14131798 P214238 Trp53 Enhancer P214238 Enhancer Unique Tile chr11:69396755-69397654 (+) NM_011640 + 173 69396582 22059 Trp53 bbl|bfy|bhy|p53 transformation related protein 53 MGI:98834 Mm.222 11 11 B2-C|11 39.0 cM TP53 7157 NM_144824 - 304 69396451 216853 Wdr79 0 TCTCCGTTTGCATCCATAAAACT ACCGGATACTCGGTAATTTGCTT 5 7 4 1.1.2.1.4.7 BCBC-5B-0 14131817 P215360 AI553587 Enhancer P215360 Enhancer Unique Tile chr11:17115405-17116355 (-) NM_178909 + 3439 17111966 103784 AI553587 HZGJ expressed sequence AI553587 MGI:2144224 Mm.298132 11 11 A2 LOC116143 116143 NM_025443 - 3842 17111563 66249 1810003N24Rik 0 AAAAAGTCCAAAGCCCAAGAAAG CACATGACCAGTGTCTAGCCAAG 5 7 5 1.1.2.1.5.7 BCBC-5B-0 14131836 P216200 Alg12 Enhancer P216200 Enhancer Unique Tile chr15:88643107-88644012 (+) NM_145477 - 3034 88647046 223774 Alg12 ECM39|MGC29374 asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase) MGI:2385025 Mm.41512 15 15 E3 ALG12 79087 NM_029720 + 3399 88647411 76737 Creld2 0 ATGAGATGAAACTGTGTGGCTGA AGTTCAAAGCTCTACATGGCTGG 5 7 6 1.1.2.1.6.7 BCBC-5B-0 14131855 P216950 Fbxo21 Enhancer P216950 Enhancer Unique Tile chr5:118238384-118239262 (+) NM_145564 + 585 118237799 231670 Fbxo21 2810425J22Rik|AU016673|MGC28066|mKIAA0875 F-box only protein 21 MGI:1924223 Mm.21912 5 5 F FBXO21 23014 NM_021344 + 49591 118288853 57816 Tesc 1 GCATTCCTGGCTAGCTCCTTAG AAGTAGGGCTAGCAGGGACAAAT 5 7 7 1.1.2.1.7.7 BCBC-5B-0 14131874 P218072 Hist1h2ae ChickenHuman P218072 ChickenHuman Unique Tile chr13:23575308-23576267 (+) NM_178187 - 2336 23578603 319166 Hist1h2ae 1190022L06 histone 1, H2ae MGI:2448290 Mm.261665 13 13 A2-A3 HIST1H2AE 3012 NM_178196 + 2593 23578860 319181 Hist1h2bg 0 CAAGATGGACCTGGATAGCAACT AGTTTGAGCTCCTCCATGATGTC 5 7 8 1.1.2.1.8.7 BCBC-5B-0 14131893 P218740 Olfr424 ProximalPromoter P218740 ProximalPromoter Unique Tile chr1:175972439-175973479 (+) NM_146721 + 59 175973420 258716 Olfr424 MGC123722|MGC123723|MOR105-2 olfactory receptor 424 MGI:3030258 Mm.377651 1 - NM_146720 + 14713 175988192 258715 Olfr421 0 TCTGCTTCATTTTGCACCTAACA AACTGGGGAAATCCAGAGAAGAG 5 7 9 1.1.2.1.9.7 BCBC-5B-0 14131912 P219580 Dtwd1 Enhancer P219580 Enhancer Unique Tile chr2:125843320-125844355 (+) NM_026981 + 314 125843634 69185 Dtwd1 1810033A06Rik DTW domain containing 1 MGI:1916435 Mm.29019 2 2 F2 DTWD1 56986 0 AAAGCGGTGTTACTAGCTCCTCA ACACACTAAGCTGATTTGCCTCC 5 7 10 1.1.2.1.10.7 BCBC-5B-0 14131931 P220702 Adrb1 ProximalPromoter P220702 ProximalPromoter Unique Tile chr19:56774388-56775192 (+) NM_007419 + 429 56775621 11554 Adrb1 Adrb-1|beta-AR adrenergic receptor, beta 1 MGI:87937 Mm.399609; Mm.46797; Mm.399609; Mm.46797 19 19 D2|19 51.0 cM ADRB1 153 1 GCGGATGTTAAGGTGTTGGTACT ATTGAAAGGCTCCAAAGATTGC 5 7 11 1.1.2.1.11.7 BCBC-5B-0 14131950 P221452 Sprr2g ProximalPromoter P221452 ProximalPromoter Unique Tile chr3:92458452-92459364 (+) NM_011473 + 47 92459317 20761 Sprr2g - small proline-rich protein 2G MGI:1330348 Mm.57083 3 3 F1|3 45.2 cM NM_011472 + 7863 92450589 20760 Sprr2f 1 TTGTGAGTGTGTGTGTGTGTGTG CTCACCAGCTTCTCCAACGTAGT 5 7 12 1.1.2.1.12.7 BCBC-5B-0 14131969 P222574 Tmem154 ProximalPromoter P222574 ProximalPromoter Unique Tile chr3:84786786-84787880 (+) NM_177260 + 35645 84752235 320782 Tmem154 9930117H01Rik transmembrane protein 154 MGI:2444725 Mm.107370 3 3 F1 TMEM154 201799 0 TTGTTTATCCCCTGCCTCAGATA AACGCCTCTTGGACTTAGGATTC 5 7 13 1.1.2.1.13.7 BCBC-5B-0 14131988 P223414 Sema6a ProximalPromoter P223414 ProximalPromoter Unique Tile chr18:47493690-47494644 (-) NM_018744 - 87 47493777 20358 Sema6a 9330158E07|A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa|sema sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A MGI:1203727 Mm.397257; Mm.40909; Mm.397257; Mm.40909; Mm.397257; Mm.40909; Mm.397257; Mm.40909; Mm.397257; Mm.40909; Mm.397257; Mm.40909; Mm.397257; Mm.40909; Mm.397257; Mm.40909; Mm.397257; Mm.40909; Mm.397257; Mm.40909; Mm.397257; Mm.40909; Mm.397257; Mm.40909; Mm.397257; Mm.40909 18 18 C SEMA6A 57556 1 GCTGTCTGGGATTTCTTTCCTTT GCAAGCCTTTGTCATTCCTACAT 5 7 14 1.1.2.1.14.7 BCBC-5B-0 14132007 P224164 Olfr69 ProximalPromoter P224164 ProximalPromoter Unique Tile chr7:103645347-103646433 (-) NM_013621 - 68 103645415 18370 Olfr69 3'[b]3|3'beta3|MOR22-2 olfactory receptor 69 MGI:1341789 Mm.377110 7 7 E3 NM_013620 - 5731 103652164 18369 Olfr68 0 GATTCTCAGAGGACAGCCATGAT AAGCCCATAAACTTACCTGGAGC 5 7 15 1.1.2.1.15.7 BCBC-5B-0 14132026 P225286 LOC381806 ProximalPromoter P225286 ProximalPromoter Unique Tile chr6:122101254-122102334 (+) NM_001013775 + 88 122102246 381806 LOC381806 - similar to Murinoglobulin 2 precursor (MuG2) Mm.422976 6 6 F1 0 TCTGGACATGTTCATCTCTGCAT ACAGGAGGACAGAGCTTATGGTG 5 7 16 1.1.2.1.16.7 BCBC-5B-0 14132045 P226718 Pdx1 P226718 Pdx1 Unique Tile chr4:127656189-127657104 (+) 0 AAAAATTTAAGGCCGAGGGATGT GGATCTGAAGATGATTGTCCAGG 5 7 17 1.1.2.1.17.7 BCBC-5B-0 14132064 P227558 Cacna2d3 Pdx1 P227558 Pdx1 Unique Tile chr14:28523028-28523983 (+) NM_009785 - 24892 28548875 12294 Cacna2d3 Cacnad3 calcium channel, voltage-dependent, alpha2/delta subunit 3 MGI:1338890 Mm.386754 14 14 B CACNA2D3 55799 0 AGTATGCACTGGGAACTAGGGGT GGTACTGGGCTTTTTCCTCTGAC 5 7 18 1.1.2.1.18.7 BCBC-5B-0 14132083 P003015 Blank P003015 Buffer Control Negative Blank 5 7 19 1.1.2.1.19.7 BCBC-5B-0 14132102 P003328 Blank P003328 Buffer Control Negative Blank 5 7 20 1.1.2.1.20.7 BCBC-5B-0 14131742 P211592 PufferfishHuman P211592 PufferfishHuman Unique Tile chr6:143951914-143952954 (-) 0 TGGGAAGCTTGTGGTTCATAGTT AACTAAACCCCACTGGTGACTGA 5 8 1 1.1.2.1.1.8 BCBC-5B-0 14131761 P212342 miRNA P212342 miRNA Unique Tile chr8:110441257-110442208 (-) mmu-mir-140 0 GACTTAGAAAAGCTGGCACTGGA CAAACTTCAGGTGCTGTCCTCTT 5 8 2 1.1.2.1.2.8 BCBC-5B-0 14131780 P213464 Serpinb6a Enhancer P213464 Enhancer Unique Tile chr13:33938309-33939287 (-) NM_009254 - 4141 33943428 20719 Serpinb6a AI876477|Serpinb6|Spi3|ovalbumin serine (or cysteine) peptidase inhibitor, clade B, member 6a MGI:103123 Mm.252210 13 13 A3.3|13 13.7 cM SERPINB6 5269 NM_148942 - 25136 33913173 97848 Serpinb6c 0 AAGACAAAGATGAGTCAGCCCAG AGACAGTTCCAACTGAAGGCAAG 5 8 3 1.1.2.1.3.8 BCBC-5B-0 14131799 P214214 Tfpi Enhancer P214214 Enhancer Unique Tile chr2:84271950-84272869 (-) NM_011576 - 2144 84275013 21788 Tfpi A630013F22Rik|AW552122|EPI|LACI tissue factor pathway inhibitor MGI:1095418 Mm.124316 2 2 D TFPI 7035 0 TGGCTTGCAACACAGTTAAAGAA AGATTACTGGTGGAGAGGAAGGG 5 8 4 1.1.2.1.4.8 BCBC-5B-0 14131818 P215054 Trp53inp1 Enhancer P215054 Enhancer Unique Tile chr4:11079532-11080529 (+) NM_021897 + 3058 11083587 60599 Trp53inp1 2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap transformation related protein 53 inducible nuclear protein 1 MGI:1926609 Mm.28708; Mm.393018; Mm.28708; Mm.393018; Mm.28708; Mm.393018; Mm.28708; Mm.393018; Mm.28708; Mm.393018; Mm.28708; Mm.393018; Mm.28708; Mm.393018; Mm.28708; Mm.393018; Mm.28708; Mm.393018; Mm.28708; Mm.393018 4 4 A1-A2 TP53INP1 94241 NM_009830;NM_001037134; + 37971 11118500 12448 Ccne2 0 TTTATGTTGGAAGGAGGCCTGTA CACCAACAACAGCAACAAATCTC 5 8 5 1.1.2.1.5.8 BCBC-5B-0 14131837 P216176 Tmem59 Enhancer P216176 Enhancer Unique Tile chr4:106677121-106678073 (+) NM_029565 + 464 106676657 56374 Tmem59 1110001M20Rik|3110046P06Rik|AI256529|D4Ertd20e|MTDCF1|ORF18 transmembrane protein 59 MGI:1929278 Mm.291192 4 4 51.8 cM TMEM59 9528 NM_025617 - 869 106676252 66526 2210012G02Rik 0 GCTTGCTAGGGTAGATGGAGGAT CCTGTCTCGAAAAACCAAAAGAA 5 8 6 1.1.2.1.6.8 BCBC-5B-0 14131856 P216926 Pi4k2a Enhancer P216926 Enhancer Unique Tile chr19:42144224-42145261 (+) NM_145501 + 441 42143783 84095 Pi4k2a MGC118011|MGC37783|Pi4k2 phosphatidylinositol 4-kinase type 2 alpha MGI:1934031 Mm.117037 19 19 C3|19 47.0 cM PI4KII 55361 NM_198108 - 11780 42132444 226123 BC023055 0 TACTTCGTCAAGGACTCTCAGGG TAGGGCTACAGAGAGAAACGGTG 5 8 7 1.1.2.1.7.8 BCBC-5B-0 14131875 P218048 Hist1h3f ChickenHuman P218048 ChickenHuman Unique Tile chr13:23551334-23552268 (+) NM_013548 + 95 23551429 260423 Hist1h3f H3.2-221|Hist1 histone 1, H3f MGI:2448329 Mm.221389 13 13 A2-A3|13 12.0 cM HIST1H3F 8968 NM_178197 - 510 23550824 319182 Hist1h2bh 0 GGCTAAAGTAGGCATGCTTTTCA CCTCAAACAGACCCACAAGGTAG 5 8 8 1.1.2.1.8.8 BCBC-5B-0 14131894 P218806 Tph2 ProximalPromoter P218806 ProximalPromoter Unique Tile chr10:114589170-114590112 (-) NM_173391 - 38 114589132 216343 Tph2 AU043594|Ntph tryptophan hydroxylase 2 MGI:2651811 Mm.31597 10 10 D2 TPH2 121278 0 GTGCTGGTTTTCAGAGGACAAGT CTGAGGACTGATGGAAAGCTGAT 5 8 9 1.1.2.1.9.8 BCBC-5B-0 14131913 P219556 3110082I17Rik Enhancer P219556 Enhancer Unique Tile chr5:139710629-139711540 (-) NM_028469 - 2615 139714155 73212 3110082I17Rik AW411904 RIKEN cDNA 3110082I17 gene MGI:1920462 Mm.84294 5 5 G2 MGC11257 84310 NM_133349 - 26519 139738059 100494 Zfand2a 0 CTAGCAATCGTAGGCTGACCTGT GAAAGGTGGCAGATTTAATCCCT 5 8 10 1.1.2.1.10.8 BCBC-5B-0 14131932 P220678 ProximalPromoter P220678 ProximalPromoter Unique Tile chr2:123780528-123781445 (+) 0 AGCACTGTGTAAAGAAAGGCCAG TTTGACACTTCACCGGTTACTCC 5 8 11 1.1.2.1.11.8 BCBC-5B-0 14131951 P221428 Bcmo1 Enhancer P221428 Enhancer Unique Tile chr8:119979904-119980865 (+) NM_021486 + 976 119981841 63857 Bcmo1 Bcdo|Bcdo1|beta-CD|betaCMOOX beta-carotene 15,15'-monooxygenase MGI:1926923 Mm.174133 8 8 E1 BCMO1 53630 NM_029686 - 11478 119968426 76645 Pkd1l2 0 GCAGCATGAAGTAGCAGGTAGGT CCAAAGAAAGACCCTGAGATCAA 5 8 12 1.1.2.1.12.8 BCBC-5B-0 14131970 P222268 Fmr1nb ProximalPromoter P222268 ProximalPromoter Unique Tile chrX:65021476-65022480 (+) NM_174993 + 23 65022503 207854 Fmr1nb 3830422N12Rik|MGC117577|NY-SAR-35|NYSAR35 fragile X mental retardation 1 neighbor MGI:2672032 Mm.284945 X X A7.1 FMR1NB 158521 0 AGTTTCTGCAAGGCAAAAGACAC GGGAACTTTGAGCTCTCGTGATA 5 8 13 1.1.2.1.13.8 BCBC-5B-0 14131989 P223390 Plekhf2 ProximalPromoter P223390 ProximalPromoter Unique Tile chr4:10935006-10935824 (-) NM_175175 - 289 10934717 71801 Plekhf2 1110070J07Rik|AA673237|ZFYVE18 pleckstrin homology domain containing, family F (with FYVE domain) member 2 MGI:1919051 Mm.34351 4 4 A1 PLEKHF2 79666 1 TGTTTCACAGACATTCTTCTTCC GCCTGACCTGACTTTCCTGACT 5 8 14 1.1.2.1.14.8 BCBC-5B-0 14132008 P224140 1700113O17Rik Enhancer P224140 Enhancer Unique Tile chr2:17912322-17913327 (-) NM_026627 - 1373 17914700 68231 1700113O17Rik - RIKEN cDNA 1700113O17 gene MGI:1915481 Mm.23887 2 2 A2 0 CAATCCGTGTTGCATTTGAGATA TGATAATAACAAGCATCCACCCC 5 8 15 1.1.2.1.15.8 BCBC-5B-0 14132027 P225262 Olfr774 ProximalPromoter P225262 ProximalPromoter Unique Tile chr10:128640102-128641148 (+) NM_207620 + 49 128641099 258232 Olfr774 MOR111-11|MOR111-2 olfactory receptor 774 MGI:3030608 Mm.391464 10 10 D3 NM_146546;NM_146545; + 12336 128653484 258538; 258539 Olfr1518; Olfr775 0 AATTCTTTGAGAAGGATGGCACT CTGATATGCCCAAGAGCAGAAAC 5 8 16 1.1.2.1.16.8 BCBC-5B-0 14132046 P226784 Pdx1 P226784 Pdx1 Unique Tile chr2:27394654-27395571 (+) 0 GTGTAGGTTAATGAGGACCAGCG CATTCATTAGCAGGAAGAGGGTG 5 8 17 1.1.2.1.17.8 BCBC-5B-0 14132065 P227534 Dnm2 Pdx1 P227534 Pdx1 Unique Tile chr9:21185487-21186440 (+) NM_001039520 + 10141 21175346 13430 Dnm2 - dynamin 2 MGI:109547 Mm.325205 9 9 A3|9 7.0 cM DNM2 1785 NM_021888 + 23183 21162304 60507 Qtrt1 2 GAAGAGGGCGTCAGATCTTGTTA AATAGTGGATGCAGAAGGCTCAG 5 8 18 1.1.2.1.18.8 BCBC-5B-0 14132084 P002991 Blank P002991 Buffer Control Negative Blank 5 8 19 1.1.2.1.19.8 BCBC-5B-0 14132103 P003328 Blank P003328 Buffer Control Negative Blank 5 8 20 1.1.2.1.20.8 BCBC-5B-0 14131743 P211568 PufferfishHuman P211568 PufferfishHuman No Hits Tile 0 ttagtcccatatttgccaggaga agaagagtgatggatagaggggg 5 9 1 1.1.2.1.1.9 BCBC-5B-0 14131762 P212318 miRNA P212318 miRNA Unique Tile chr9:106013177-106014119 (-) mmu-mir-135a-1 0 AGACTGCCTGCATATTCTCAACC TAATCTAGTTGGGGGAACAAGCA 5 9 2 1.1.2.1.2.9 BCBC-5B-0 14131781 P213440 St8sia4 Enhancer P213440 Enhancer Unique Tile chr1:97495141-97496170 (-) NM_009183 - 1807 97497977 20452 St8sia4 PST|PST-1|ST8SiaIV|Siat8d ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 MGI:106018 Mm.306228 1 1 D ST8SIA4 7903 0 GTTGGAAAATCCATGTCAATGGT CTGCACTGCTCTTGGTAACACTG 5 9 3 1.1.2.1.3.9 BCBC-5B-0 14131800 P214280 Zfp207 Enhancer P214280 Enhancer Unique Tile chr11:80199657-80200622 (+) NM_011751 + 117 80199540 22680 Zfp207 8430401D15Rik|Zep zinc finger protein 207 MGI:1340045 Mm.102253; Mm.401332; Mm.102253; Mm.401332; Mm.102253; Mm.401332; Mm.102253; Mm.401332; Mm.102253; Mm.401332; Mm.102253; Mm.401332; Mm.102253; Mm.401332; Mm.102253; Mm.401332; Mm.102253; Mm.401332; Mm.102253; Mm.401332; Mm.102253; Mm.401332; Mm.102253; Mm.401332; Mm.102253; Mm.401332; Mm.102253; Mm.401332; Mm.102253; Mm.401332; Mm.102253; Mm.401332; Mm.102253; Mm.401332; Mm.102253; Mm.401332 11 11 B5 ZNF207 7756 NM_027472 - 5463 80194194 70591 5730455P16Rik 0 GCAAGAAGAAGAAGCAGCTCAAG GACAGAGCAATTTCCAGACAACC 5 9 4 1.1.2.1.4.9 BCBC-5B-0 14131819 P215030 C1galt1c1 Enhancer P215030 Enhancer Unique Tile chrX:34878534-34879580 (-) NM_021550 - 156 34879736 59048 C1galt1c1 1500002I11Rik|AB030184|C81205 C1GALT1-specific chaperone 1 MGI:1913493 Mm.327675; Mm.406424; Mm.327675; Mm.406424; Mm.327675; Mm.406424; Mm.327675; Mm.406424; Mm.327675; Mm.406424; Mm.327675; Mm.406424; Mm.327675; Mm.406424; Mm.327675; Mm.406424; Mm.327675; Mm.406424; Mm.327675; Mm.406424 X X A2 C1GALT1C1 29071 NM_026902 + 33223 34845311 68995 Mcts1 0 ACTTCAAGCACAACCCAGAGCTA ACCTATAAACGCGACATGTGGAT 5 9 5 1.1.2.1.5.9 BCBC-5B-0 14131838 P216152 Pcdh1 Enhancer P216152 Enhancer Unique Tile chr18:38337383-38338350 (-) NM_029357 - 1647 38335736 75599 Pcdh1 2010005A06Rik|AI585920 protocadherin 1 MGI:104692 Mm.355494; Mm.36560; Mm.355494; Mm.36560; Mm.355494; Mm.36560; Mm.355494; Mm.36560; Mm.355494; Mm.36560; Mm.355494; Mm.36560; Mm.355494; Mm.36560; Mm.355494; Mm.36560; Mm.355494; Mm.36560 18 18 B3 PCDH1 5097 NM_024179 + 37882 38376232 66839 0610009O20Rik 1 GGGAAGAAAGAGCCAGAAGAGAC GTGGATAACGTTCCTAGCTTCCC 5 9 6 1.1.2.1.6.9 BCBC-5B-0 14131857 P216902 Nr1d1 Enhancer P216902 Enhancer Unique Tile chr11:98589737-98590749 (-) NM_145434 - 163 98590912 217166 Nr1d1 A530070C09Rik|R75201 nuclear receptor subfamily 1, group D, member 1 MGI:2444210 Mm.390397 11 11 D NR1D1 9572 NM_028722 + 20856 98611605 74026 4121402D02Rik 0 GAGGAACTTTGTAAGGGATTGGG TGTGAGGTTTAGCTGGGACGTAT 5 9 7 1.1.2.1.7.9 BCBC-5B-0 14131876 P217742 Zfp750 Enhancer P217742 Enhancer Unique Tile chr11:121334234-121335234 (-) NM_178763 - 157 121335391 319530 Zfp750 A030007D23Rik zinc finger protein 750 MGI:2442210 Mm.11395 11 11 E2 ZNF750 79755 0 GTTGTCTGCTCTTTCCTGCTCTC GTCCTGTGAATTGACCTGCAAAT 5 9 8 1.1.2.1.8.9 BCBC-5B-0 14131895 P218782 4930403L05Rik Enhancer P218782 Enhancer Unique Tile chrX:14264600-14265503 (-) NM_026128 - 2922 14268425 67395 4930403L05Rik - RIKEN cDNA 4930403L05 gene MGI:1914645 Mm.50369 X X A1.1 0 CACCCCATTTGCTCAGAATCTAT CCTTTGTAAACTTGACCGTGTCC 5 9 9 1.1.2.1.9.9 BCBC-5B-0 14131914 P219532 Gsdm1 Enhancer P219532 Enhancer Unique Tile chr11:98483692-98484687 (+) NM_021347 + 3252 98480440 57911 Gsdm1 BB149167|Gsdm|H312E gasdermin 1 MGI:1889509 Mm.86870 11 11 D GSDM1 284110 NM_009439 + 13956 98498643 22123 Psmd3 0 CTTGGGTTTAGCCTTGAATGATG AGAGAGAGAGGGGAGTGTGTGTG 5 9 10 1.1.2.1.10.9 BCBC-5B-0 14131933 P220654 Pbsn ProximalPromoter P220654 ProximalPromoter Unique Tile chrX:74106222-74107123 (-) NM_017471 - 3 74106219 54192 Pbsn PB|Prbs probasin MGI:1860484 Mm.8034 X X A7.3 0 GGGAAACCCAGGACTAATGAGAT CTCTGTGGGTATCTGGACCTCAC 5 9 11 1.1.2.1.11.9 BCBC-5B-0 14131952 P221494 H2-M10.6 ProximalPromoter P221494 ProximalPromoter Unique Tile chr17:36419365-36420292 (+) NM_201611 + 65 36420227 399549 H2-M10.6 - histocompatibility 2, M region locus 10.6 MGI:2687364 Mm.329034 17 17 B1 NM_030698;NM_001025599; + 24944 36445236 22670 Trim26 0 CTGATATGAAGGACCTTGCTGCT ATACTGGGTCAGGTCTATTGCCA 5 9 12 1.1.2.1.12.9 BCBC-5B-0 14131971 P222244 Cyp2c29 Enhancer P222244 Enhancer Unique Tile chr19:39335355-39336265 (+) NM_007815 + 4148 39340413 13095 Cyp2c29 AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C cytochrome P450, family 2, subfamily c, polypeptide 29 MGI:103238 Mm.20764 19 19 D2|19 27.0 cM 0 CCCATTTCTAAGCACAATGGAAG CCAAAGTCATCTTACCCTGCTGT 5 9 13 1.1.2.1.13.9 BCBC-5B-0 14131990 P223366 Gata1 Enhancer P223366 Enhancer Unique Tile chrX:7128335-7129334 (-) NM_008089 - 3511 7124824 14460 Gata1 Gata-1|Gf-1 GATA binding protein 1 MGI:95661 Mm.335973 X X A2|X 1.9 cM GATA1 2623 NM_010413 - 23639 7104696 15185 Hdac6 2 ATGAGTACTGGGAATTGAACCCA AGGAAATGAAGGGTGCCTCTAAG 5 9 14 1.1.2.1.14.9 BCBC-5B-0 14132009 P224116 Olfr393 ProximalPromoter P224116 ProximalPromoter Unique Tile chr11:73664247-73665338 (-) NM_147008 - 71 73664318 259010 Olfr393 MOR135-7 olfactory receptor 393 MGI:3030227 Mm.377787 11 - NM_147006 - 32972 73631275 259008 Olfr392 0 AATGAGGAGAGAAAAGCATGTGG TTTGTACTCTAGGGAAATGGGCA 5 9 15 1.1.2.1.15.9 BCBC-5B-0 14132028 P224956 Tm7sf4 ProximalPromoter P224956 ProximalPromoter Unique Tile chr15:39574951-39575908 (+) NM_029422 + 97 39576005 75766 Tm7sf4 4833414I07Rik|DC-STAMP|DCSTAMP|FIND transmembrane 7 superfamily member 4 MGI:1923016 Mm.159563 15 15 C TM7SF4 81501 0 ACAGGAAAACTGTTGGCATTGTT TTTCCTCCACAAAGTGACGAAGT 5 9 16 1.1.2.1.16.9 BCBC-5B-0 14132047 P226760 Mmd2 Pdx1 P226760 Pdx1 Unique Tile chr5:142844044-142845500 (+) NM_175217 - 15726 142861226 75104 Mmd2 4930518M15Rik|C88001 monocyte to macrophage differentiation-associated 2 MGI:1922354 Mm.48712 5 5 G2 MMD2 221938 NM_178398 + 36556 142882056 74781 Wipi2 0 GGTGTCATGATGTCTGCCTGTAA CGTGAGTTCTATTGATGGGGTTC 5 9 17 1.1.2.1.17.9 BCBC-5B-0 14132066 P227510 Pdx1 P227510 Pdx1 Unique Tile chr3:85571084-85572035 (+) 0 TGAGGTCAGTGAGTGAGCAAGTC GAATCTAGCAGAACCCGCTGATA 5 9 18 1.1.2.1.18.9 BCBC-5B-0 14132085 P002967 Blank P002967 Buffer Control Negative Blank 5 9 19 1.1.2.1.19.9 BCBC-5B-0 14132104 P003280 Blank P003280 Buffer Control Negative Blank 5 9 20 1.1.2.1.20.9 BCBC-5B-0 14131744 P211544 Dach1 PufferfishHuman P211544 PufferfishHuman Unique Tile chr14:97052440-97053457 (+) NM_007826;NM_001038610; - 237 97052677 13134 Dach1 AI182278|Dac|Dach|E130112M23Rik dachshund 1 (Drosophila) MGI:1277991 Mm.320593 14 14 E3|14 48.0 cM DACH1 1602 1 CCATGGTCACATATAAGGGGAAA TTCCTTTTGTAACTGCTTGCACA 5 10 1 1.1.2.1.1.10 BCBC-5B-0 14131763 P212294 miRNA P212294 miRNA Unique Tile chr12:110195770-110196848 (-) mmu-mir-134 0 GTCACCCCAGAACCCTATAATCC CACACAATCTCACTTTGTCCTCG 5 10 2 1.1.2.1.2.10 BCBC-5B-0 14131782 P213134 Irf8 Enhancer P213134 Enhancer Unique Tile chr8:123623237-123624153 (+) NM_008320 + 885 123622352 15900 Irf8 AI893568|ICSBP|IRF-8|Icsbp1|Myls interferon regulatory factor 8 MGI:96395 Mm.334861 8 8 E1|8 65.0 cM IRF8 3394 0 GAGATGGGTCTGTGATGGATTTC TTCTGGAGAGGAGATAGGAGGCT 5 10 3 1.1.2.1.3.10 BCBC-5B-0 14131801 P214256 Vbp1 Enhancer P214256 Enhancer Unique Tile chrX:71762312-71763286 (+) NM_011692 + 3786 71767072 22327 Vbp1 - von Hippel-Lindau binding protein 1 MGI:1333804 Mm.8294 X X A7.3|X 30.8 cM VBP1 7411 0 AAATGAAAAGTCATTGGAGGCAG CTGGCCTCTAACTCAGAAATCCA 5 10 4 1.1.2.1.4.10 BCBC-5B-0 14131820 P215006 Pvrl3 Enhancer P215006 Enhancer Unique Tile chr16:46414964-46415984 (-) NM_021496;NM_021495;NM_021497; - 127 46416111 58998 Pvrl3 2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082 poliovirus receptor-related 3 MGI:1930171 Mm.328072 16 16 B5 PVRL3 25945 1 TTATTCCCCTGCTTCTCTTCTCC CCGTCAGCAATCCTTAAATGAAC 5 10 5 1.1.2.1.5.10 BCBC-5B-0 14131839 P216128 Snx11 Enhancer P216128 Enhancer Unique Tile chr11:96591089-96592109 (-) NM_028965 - 1501 96593610 74479 Snx11 4933439F10Rik|A930041K09Rik|AI117694 sorting nexin 11 MGI:1921729 Mm.270781 11 11 D SNX11 29916 NM_007622 + 13139 96605248 12412 Cbx1 0 AAGAGGAGAAGAGAGGGGGAAAT CACTACAATCAGTTGCGATCCTG 5 10 6 1.1.2.1.6.10 BCBC-5B-0 14131858 P216968 Zfp330 Enhancer P216968 Enhancer Unique Tile chr8:85663024-85663986 (-) NM_145600 - 243 85664229 30932 Zfp330 BC008086|MGC103365|MGC41503|MGC6718|Noa36 zinc finger protein 330 MGI:1353574 Mm.269248; Mm.424883; Mm.269248; Mm.424883; Mm.269248; Mm.424883; Mm.269248; Mm.424883; Mm.269248; Mm.424883; Mm.269248; Mm.424883; Mm.269248; Mm.424883; Mm.269248; Mm.424883; Mm.269248; Mm.424883; Mm.269248; Mm.424883; Mm.269248; Mm.424883; Mm.269248; Mm.424883 8 8 C2 ZNF330 27309 0 TCAAAGAAATCTCTCCTCGTTGG ACTTCTTGATGCTCGCAGTTGTT 5 10 7 1.1.2.1.7.10 BCBC-5B-0 14131877 P217718 Sccpdh Enhancer P217718 Enhancer Unique Tile chr1:181505461-181506383 (+) NM_178653 + 548 181504913 109232 Sccpdh AW214504|C330023F11Rik saccharopine dehydrogenase (putative) MGI:1924486 Mm.136458 1 1 H4 SCCPDH 51097 0 GCTCCTCTGTCCATCTCTGTTGT ATCCACAGGTCTCTGAGAACCAC 5 10 8 1.1.2.1.8.10 BCBC-5B-0 14131896 P218758 Klf13 Enhancer P218758 Enhancer Unique Tile chr7:63816043-63817003 (-) NM_021366 - 804 63817807 50794 Klf13 0610043C13Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel-like factor 13 MGI:1354948 Mm.240473 7 7 C KLF13 51621 1 AGAGGAAGCACAAGTGCCACTAC GTCGGACTTCGACATCAACTACC 5 10 9 1.1.2.1.9.10 BCBC-5B-0 14131915 P219508 Top1mt ProximalPromoter P219508 ProximalPromoter Unique Tile chr15:75503434-75504341 (-) NM_028404 - 2611 75506045 72960 Top1mt 2900052H09Rik DNA topoisomerase 1, mitochondrial MGI:1920210 Mm.182401 15 15 E1 TOP1MT 116447 NM_008164 + 27242 75531583 14787 Rhpn1 0 TGATCCTTTCTTTCCTCAAACCA GCCTCTGGCCTATTACCTAGGAG 5 10 10 1.1.2.1.10.10 BCBC-5B-0 14131934 P220348 C1rl ProximalPromoter P220348 ProximalPromoter Unique Tile chr6:124457855-124458773 (+) NM_181344 + 5 124458768 232371 C1rl C1r-LP|C1rl1|C1rlp complement component 1, r subcomponent-like MGI:2660692 Mm.132974 6 6 F2 C1RL 51279 NM_023143 + 19250 124478023 50909 C1r 0 ATTGAACTCAAGACCTCTGCTCG ACATCTGGAACTGGCTAGAGTGC 5 10 11 1.1.2.1.11.10 BCBC-5B-0 14131953 P221470 Pit1 Enhancer P221470 Enhancer Unique Tile chr16:65435386-65436325 (+) NM_008849 + 2536 65438861 18736 Pit1 GHF-1|Hmp1|Pit-1|Pou1f1|dw|dwarf pituitary specific transcription factor 1 MGI:97588 Mm.355440 16 16 C1.3|16 43.5 cM POU1F1 5449 NM_026879 - 44632 65480957 68942 Chmp2b 1 TTACCCAATATGGCCAAGAGAGA CTCACCGCAAACTTACTGCTTCT 5 10 12 1.1.2.1.12.10 BCBC-5B-0 14131972 P222220 Ica1l ProximalPromoter P222220 ProximalPromoter Unique Tile chr1:59987856-59988766 (-) NM_027407 - 223 59987633 70375 Ica1l 1700030B17Rik|Als2cr15 islet cell autoantigen 1-like MGI:1917625 Mm.17834 1 1 C2 ICA1L 130026 0 TAGCTGTGACTACCACTCGCTCC CTTGCTCGTGAGAAGTGACGG 5 10 13 1.1.2.1.13.10 BCBC-5B-0 14131991 P223342 Sipa1 ProximalPromoter P223342 ProximalPromoter Unique Tile chr19:5663806-5664722 (-) NM_011379 - 155 5663651 20469 Sipa1 KIAA4074|mKIAA4074 signal-induced proliferation associated gene 1 MGI:107576 Mm.3072 19 19 A|19 2.0 cM SIPA1 6494 NM_144868 - 23427 5688149 104401 Pcnxl3 0 GTGGGTTCATTCGTTCTTTTGTC ACAGCCTGAAGTTCTCTGTCCC 5 10 14 1.1.2.1.14.10 BCBC-5B-0 14132010 P224182 Btbd1 ProximalPromoter P224182 ProximalPromoter Unique Tile chr7:81702686-81703586 (-) NM_146193 - 258 81702944 83962 Btbd1 1190005H08Rik|MGC37676 BTB (POZ) domain containing 1 MGI:1933765 Mm.330652; Mm.71103; Mm.330652; Mm.71103; Mm.330652; Mm.71103; Mm.330652; Mm.71103; Mm.330652; Mm.71103; Mm.330652; Mm.71103; Mm.330652; Mm.71103; Mm.330652; Mm.71103; Mm.330652; Mm.71103; Mm.330652; Mm.71103 7 7 D1 BTBD1 53339 NM_145375 + 29057 81732643 107769 Tm6sf1 0 GATTACAGGCATGAGCCAATCTC CAGCTCCGAGTTGAAGAGGAAG 5 10 15 1.1.2.1.15.10 BCBC-5B-0 14132029 P224932 LOC240549 ProximalPromoter P224932 ProximalPromoter Unique Tile chr19:12666074-12667119 (+) NM_001013762 + 13 12667132 240549 LOC240549 MGC107682 similar to arylacetyl acyl-CoA N-acyltransferase Mm.302458 19 19 A NM_026640 + 25488 12640586 107373 4632417K18Rik 0 CTGACCAAATTGAAAAGGTCCAG CTCTGTCAGTCTCTCCAGAAGCC 5 10 16 1.1.2.1.16.10 BCBC-5B-0 14132048 P226736 Nol10 Pdx1 P226736 Pdx1 Unique Tile chr12:17422473-17423772 (+) NM_001008421 + 48501 17373972 217431 Nol10 Gm67|MGC113734 nucleolar protein 10 MGI:2684913 Mm.27536 12 12 A1.1 NOL10 79954 1 ATCTCTCCATCCCCCAAAATATG CCCAGGAGTCTGACTTTATCCCT 5 10 17 1.1.2.1.17.10 BCBC-5B-0 14132067 P227486 Larp7 Pdx1 P227486 Pdx1 Unique Tile chr3:127564318-127565267 (+) NM_138593 - 18947 127545371 28036 Larp7 C330027G06Rik|D3Wsu161e La ribonucleoprotein domain family, member 7 Mm.291032; Mm.379060; Mm.425195; Mm.291032; Mm.379060; Mm.425195; Mm.291032; Mm.379060; Mm.425195; Mm.291032; Mm.379060; Mm.425195; Mm.291032; Mm.379060; Mm.425195; Mm.291032; Mm.379060; Mm.425195; Mm.291032; Mm.379060; Mm.425195; Mm.291032; Mm.379060; Mm.425195; Mm.291032; Mm.379060; Mm.425195; Mm.291032; Mm.379060; Mm.425195; Mm.291032; Mm.379060; Mm.425195; Mm.291032; Mm.379060; Mm.425195; Mm.291032; Mm.379060; Mm.425195; Mm.291032; Mm.379060; Mm.425195; Mm.291032; Mm.379060; Mm.425195 3 3 G2|3 62.9 cM 0 TCTTCTGGCTTCTTTAGGCATGT CAATGCTGTCTGGAAACTGAGTG 5 10 18 1.1.2.1.18.10 BCBC-5B-0 14132086 P227462 Sh3glb2 Pdx1 P227462 Pdx1 Unique Tile chr2:30147769-30148716 (+) NM_139302 - 32524 30181240 227700 Sh3glb2 mKIAA1848 SH3-domain GRB2-like endophilin B2 MGI:2385131 Mm.33343 2 2 B SH3GLB2 56904 NM_175392 + 37627 30186343 108958 5730472N09Rik 0 GAAACACTGGTTACTGGCTTGCT GAAAGGGAAGGAGGAAAATGATG 5 10 19 1.1.2.1.19.10 BCBC-5B-0 14132105 P003280 Blank P003280 Buffer Control Negative Blank 5 10 20 1.1.2.1.20.10 BCBC-5B-0 14131745 P211520 PufferfishHuman P211520 PufferfishHuman Unique Tile chr8:92486352-92487384 (-) 0 CCTGTAGGACCACAGTCTCACAA GGTGCAGAATAAAAGTGACACCC 5 11 1 1.1.2.1.1.11 BCBC-5B-0 14131764 P212360 miRNA P212360 miRNA Unique Tile chr1:94679506-94680573 (+) mmu-mir-149 0 GACTAGACAGGTTTGTTGGGGAA ACGTCTCTCCGTTCTACCCTACC 5 11 2 1.1.2.1.2.11 BCBC-5B-0 14131783 P213110 Hmgn1 Enhancer P213110 Enhancer Unique Tile chr16:96231365-96232400 (-) NM_008251 - 177 96232577 15312 Hmgn1 HMG-14|Hmg14|MGC103397 high mobility group nucleosomal binding domain 1 MGI:96120 Mm.2756 16 16 C4|16 69.8 cM HMGN1 3150 NM_207301 + 17928 96250328 71446 Wrb 0 ATTGTTCTCCGCTGTGCTTTCT GATAGACGGTTCCCTGGCTAAGT 5 11 3 1.1.2.1.3.11 BCBC-5B-0 14131802 P214232 Top2a Enhancer P214232 Enhancer Unique Tile chr11:98841224-98842199 (-) NM_011623 - 1019 98840205 21973 Top2a Top-2 topoisomerase (DNA) II alpha MGI:98790 Mm.4237 11 11 D|11 57.0 cM TOP2A 7153 NM_010517 + 15155 98857354 16010 Igfbp4 0 TGCTCCTGGTATTCTCTCAGGAC GGAAGCTTCAATTTCCTGTGCTA 5 11 4 1.1.2.1.4.11 BCBC-5B-0 14131821 P214982 Ube2j2 Enhancer P214982 Enhancer Unique Tile chr4:154788076-154789033 (+) NM_001039159;NM_001039158;NM_021402;NM_001039157; + 119 154787957 140499 Ube2j2 1200007B18Rik|2400008G19Rik|5730472G04Rik|AL022923|Ubc6|Ubc6p ubiquitin-conjugating enzyme E2, J2 homolog (yeast) MGI:2153608 Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673; Mm.266575; Mm.371673 4 4 E2|4 83.0 cM UBE2J2 118424 NM_026125 + 17084 154806117 67389 C1qdc2 0 AACGTATCCCGTGAGTTTGTTGT CACTATCTGCTGCCCTATCTGCT 5 11 5 1.1.2.1.5.11 BCBC-5B-0 14131840 P215822 Enhancer P215822 Enhancer No Hits Tile 1 ctgttctggaaggaggaaatgg cttctaccccctccagtctcact 5 11 6 1.1.2.1.6.11 BCBC-5B-0 14131859 P216944 Clcc1 Enhancer P216944 Enhancer Unique Tile chr3:108784933-108785930 (+) NM_145543 + 2631 108782302 229725 Clcc1 Mclc chloride channel CLIC-like 1 MGI:2385186 Mm.214545 3 3 F3 CLCC1 23155 0 ACTATAAAAGAGGCTGCTTGCCC CCGGCCTGTCATTTACATTTTTA 5 11 7 1.1.2.1.7.11 BCBC-5B-0 14131878 P217694 D10Ucla1 Enhancer P217694 Enhancer Unique Tile chr10:66491255-66492184 (-) NM_178606 - 30 66492214 28193 D10Ucla1 Reep3 DNA segment, Chr 10, University of California at Los Angeles 1 MGI:88930 Mm.391593; Mm.392396; Mm.41272; Mm.391593; Mm.392396; Mm.41272; Mm.391593; Mm.392396; Mm.41272; Mm.391593; Mm.392396; Mm.41272; Mm.391593; Mm.392396; Mm.41272; Mm.391593; Mm.392396; Mm.41272; Mm.391593; Mm.392396; Mm.41272; Mm.391593; Mm.392396; Mm.41272; Mm.391593; Mm.392396; Mm.41272; Mm.391593; Mm.392396; Mm.41272; Mm.391593; Mm.392396; Mm.41272; Mm.391593; Mm.392396; Mm.41272; Mm.391593; Mm.392396; Mm.41272 10 10 B5.1|10 30.0 cM REEP3 221035 1 GAAAAGATGGTGTCCTGGATGAT TACATGAATAATGAATTCCCGCC 5 11 8 1.1.2.1.8.11 BCBC-5B-0 14131897 P218734 Synpr Enhancer P218734 Enhancer Unique Tile chr14:12078362-12079296 (+) NM_028052 + 263 12078099 72003 Synpr 1500003F20Rik|SPO synaptoporin MGI:1919253 Mm.317515 14 14 A2 SYNPR 132204 NM_177813 - 457 12077905 328354 C630025C03 0 TCGGCTCATACTTTTGCTTTCTC AATTCTACATGACGGGCTTTGAA 5 11 9 1.1.2.1.9.11 BCBC-5B-0 14131916 P219574 Kitl Enhancer P219574 Enhancer Unique Tile chr10:99445643-99446728 (+) NM_013598 + 102 99445541 17311 Kitl Clo|Con|Gb|Mgf|SCF|SF|SLF|Sl|Steel|contrasted kit ligand MGI:96974 Mm.45124 10 10 D1|10 57.0 cM KITLG 4254 0 CTCCAGAACAGCTAAACGGAGTC CTCTTTCCACACATACACCCTCC 5 11 10 1.1.2.1.10.11 BCBC-5B-0 14131935 P220324 Rhbdd1 Enhancer P220324 Enhancer Unique Tile chr1:82223123-82224103 (+) NM_029777 + 3781 82219342 76867 Rhbdd1 4930418P06Rik|MGC7809 rhomboid domain containing 1 MGI:1924117 Mm.226994 1 1 C5 RHBDD1 84236 0 GGAGAACACACTTCCCTATGGTG GTGACAAGTGTGTCAGGTTCAGG 5 11 11 1.1.2.1.11.11 BCBC-5B-0 14131954 P221446 Marveld1 ProximalPromoter P221446 ProximalPromoter Unique Tile chr19:42199879-42200791 (+) NM_183195 + 46 42200745 277010 Marveld1 AI504298|MGC62793|Mrvldc1 MARVEL (membrane-associating) domain containing 1 MGI:2147570 Mm.206250 19 19 C3 MARVELD1 83742 NM_027106 - 17541 42182338 69534 Avpi1 0 CTGAAACCCTTCAGTCTTCAGGA CCTCCTCCCTCTACTTCAAGTCC 5 11 12 1.1.2.1.12.11 BCBC-5B-0 14131973 P222196 Zfp28 ProximalPromoter P222196 ProximalPromoter Unique Tile chr7:5978713-5979614 (+) NM_175247 + 7714 5987328 22690 Zfp28 2810438M17Rik|Zfp-28|mkr-5 zinc finger protein 28 MGI:99175 Mm.127014 7 7 A1 ZFP28 140612 NM_177888;NM_001025163; + 11186 5967527 330463 Zfp78 2 GGAGAAATGGCTCAGCAGTTAAG TGTACTCTGCTTCCTGTCACCTG 5 11 13 1.1.2.1.13.11 BCBC-5B-0 14131992 P223036 Gpr44 ProximalPromoter P223036 ProximalPromoter Unique Tile chr19:10987766-10988728 (-) NM_009962 + 15476 11004204 14764 Gpr44 Crth2|Grp45|MGC130436 G protein-coupled receptor 44 MGI:1330275 Mm.391186 19 19 A GPR44 11251 NM_134129 + 25430 10962336 28000 Prpf19 0 AACACCTGGCTGTTTACATGGAT CTGCTTAGCCTACAAGGGGCTAT 5 11 14 1.1.2.1.14.11 BCBC-5B-0 14132011 P224158 Rad51ap1 Enhancer P224158 Enhancer Unique Tile chr6:126904094-126905122 (-) NM_009013 - 42 126905164 19362 Rad51ap1 2510006L10Rik|RAB22 RAD51 associated protein 1 MGI:1098224 Mm.204634 6 6 F3|6 61.3 cM RAD51AP1 10635 NM_138594 + 462 126905584 28040 D6Wsu163e 0 GTCCTATCAGGTGAGTGGTTGGT AATGAGAATATCTCAGGCCCTCC 5 11 15 1.1.2.1.15.11 BCBC-5B-0 14132030 P224908 Pabpnl1 ProximalPromoter P224908 ProximalPromoter Unique Tile chr8:125508948-125509888 (-) NM_001007462 - 123 125508825 382035 Pabpnl1 Gm1108|ePABP2 poly(A)binding protein nuclear-like 1 MGI:2685954 Mm.25449 8 8 E1 LOC390748 390748 NM_021502 + 11213 125497735 59005 Trappc2l 1 AAGCACACAGTTTCTTAGGGCTG GGGGTCAAAGGTTGAATATCTCC 5 11 16 1.1.2.1.16.11 BCBC-5B-0 14132049 P226712 Pdx1 P226712 Pdx1 Unique Tile chr18:43422614-43423529 (+) 0 AATAGCTGCATACCCTGTTCTGG CCTTTAAACTCTAACCCCGCAGT 5 11 17 1.1.2.1.17.11 BCBC-5B-0 14132068 P227552 Pdx1 P227552 Pdx1 No Hits Tile 0 cacccacacactccagtaagatg tagccagtacaattgaccccttg 5 11 18 1.1.2.1.18.11 BCBC-5B-0 14132087 P227438 Plcb1 Pdx1 P227438 Pdx1 Unique Tile chr2:134517274-134518220 (+) NM_019677 + 39304 134477970 18795 Plcb1 3110043I21Rik|AI132408|Plcb|mKIAA0581 phospholipase C, beta 1 MGI:97613 Mm.330607 2 2 F2-F3|2 76.7 cM PLCB1 23236 0 GAAATGAAGGCGTCAATGAAAAG TGCTGCTTTGCTCTGACTAAATG 5 11 19 1.1.2.1.19.11 BCBC-5B-0 14132106 P003220 Blank P003220 Buffer Control Negative Blank 5 11 20 1.1.2.1.20.11 BCBC-5B-0 14131746 P211214 PufferfishHuman P211214 PufferfishHuman Unique Tile chr4:98805310-98806240 (-) 0 ATCCCAGCTCCACAAAAATAACA CATCCACGTACTCAGGTATCACG 5 12 1 1.1.2.1.1.12 BCBC-5B-0 14131765 P212336 miRNA P212336 miRNA Unique Tile chr7:101344958-101345910 (+) mmu-mir-139 0 CCACCTACAGTCCACTGAGACAA GCCCAGAAGCTAGAGAACAAACA 5 12 2 1.1.2.1.2.12 BCBC-5B-0 14131784 P213086 Gss Enhancer P213086 Enhancer Unique Tile chr2:155287631-155288668 (-) NM_008180 - 3478 155284153 14854 Gss AI314904|GS-A/GS-B glutathione synthetase MGI:95852 Mm.252316 2 2 H1 GSS 2937 0 GACTCCAGTTTTGATTCCACAGG AAAAGCTGGCCACAGTGATACAT 5 12 3 1.1.2.1.3.12 BCBC-5B-0 14131803 P214208 Enhancer P214208 Enhancer Unique Tile chr10:41745042-41746071 (-) 1 AAGAACTGCTTTTGCTCCCTTCT GTTTGCTGTGTGTGTGTGTGTGT 5 12 4 1.1.2.1.4.12 BCBC-5B-0 14131822 P215048 Qk Enhancer P215048 Enhancer Unique Tile chr17:10160836-10161753 (-) NM_021881 - 491 10162244 19317 Qk 1500005P18|QkI|l(17)-1Wis|l17Wis1 quaking MGI:97837 Mm.262294; Mm.384135; Mm.394895; Mm.262294; Mm.384135; Mm.394895; Mm.262294; Mm.384135; Mm.394895; Mm.262294; Mm.384135; Mm.394895; Mm.262294; Mm.384135; Mm.394895; Mm.262294; Mm.384135; Mm.394895; Mm.262294; Mm.384135; Mm.394895; Mm.262294; Mm.384135; Mm.394895; Mm.262294; Mm.384135; Mm.394895; Mm.262294; Mm.384135; Mm.394895; Mm.262294; Mm.384135; Mm.394895; Mm.262294; Mm.384135; Mm.394895; Mm.262294; Mm.384135; Mm.394895; Mm.262294; Mm.384135; Mm.394895; Mm.262294; Mm.384135; Mm.394895; Mm.262294; Mm.384135; Mm.394895; Mm.262294; Mm.384135; Mm.394895 17 17 A1|17 5.9 cM 0 GAGATGTCCAGGAATCACGTAGG CAAATAGGAAAGGCAAAAACCCT 5 12 5 1.1.2.1.5.12 BCBC-5B-0 14131841 P215798 Dohh Enhancer P215798 Enhancer Unique Tile chr10:80802422-80803455 (-) NM_133964 + 14783 80787639 102115 Dohh 1110033C18Rik|AI585913|AL022869|Hlrc1 deoxyhypusine hydroxylase/monooxygenase MGI:1915964 Mm.294975 10 10 C1 DOHH 83475 NM_019757 - 20842 80781580 56371 Fzr1 0 AGCACTTTGAGAAACAGAGGTGG CCTTAAGCACCATGCAGTTAGGT 5 12 6 1.1.2.1.6.12 BCBC-5B-0 14131860 P216920 Zfp160 Enhancer P216920 Enhancer Unique Tile chr17:20715489-20716433 (+) NM_145483 + 1819 20713670 224585 Zfp160 6720480D16Rik|F11|HKr18|HZF5|KR18|mKIAA1611|mszf47 zinc finger protein 160 MGI:108187 Mm.296036 17 17 A3.2|17 10.2 cM NM_134202 - 16106 20699383 171236 V1rf5 0 ACCACTGTACCCTTTCACTTCCA CCTCTTTCTTCTCCTTCTCCCAG 5 12 7 1.1.2.1.7.12 BCBC-5B-0 14131879 P217670 Snupn1 Enhancer P217670 Enhancer End Repeat Tile chr9:56746928-56747878 (+) NM_178374 + 1177 56749055 66069 Snupn1 0610031A09Rik|Rnut1 snurportin 1 MGI:1913319 Mm.220984; Mm.414014; Mm.220984; Mm.414014; Mm.220984; Mm.414014; Mm.220984; Mm.414014; Mm.220984; Mm.414014; Mm.220984; Mm.414014; Mm.220984; Mm.414014; Mm.220984; Mm.414014; Mm.220984; Mm.414014; Mm.220984; Mm.414014 9 9 B SNUPN 10073 NM_133976 + 11292 56735636 102462 Imp3 1 CCAGGGCTATACAGAGAAACCCT CAGCTTTCAAGAGGCAGAGAAAG 5 12 8 1.1.2.1.8.12 BCBC-5B-0 14131898 P218428 Tgm5 Enhancer P218428 Enhancer Unique Tile chr2:120778330-120779252 (-) NM_028799 - 1130 120777200 74176 Tgm5 2310007C07Rik|MGC143848|MGC143849|TGMX|TGx transglutaminase 5 MGI:1921426 Mm.20187 2 2 E5 TGM5 9333 0 GAAAGATGATCCTCAATGGCTTG TGGCCAACTCACTTTCTAACACA 5 12 9 1.1.2.1.9.12 BCBC-5B-0 14131917 P219550 Atf7ip Enhancer P219550 Enhancer Unique Tile chr6:136483220-136484264 (+) NM_019426 + 157 136483063 54343 Atf7ip 2610204M12Rik|AM activating transcription factor 7 interacting protein MGI:1858965 Mm.173271; Mm.361788; Mm.173271; Mm.361788; Mm.173271; Mm.361788; Mm.173271; Mm.361788; Mm.173271; Mm.361788; Mm.173271; Mm.361788; Mm.173271; Mm.361788; Mm.173271; Mm.361788; Mm.173271; Mm.361788; Mm.173271; Mm.361788; Mm.173271; Mm.361788; Mm.173271; Mm.361788; Mm.173271; Mm.361788; Mm.173271; Mm.361788; Mm.173271; Mm.361788; Mm.173271; Mm.361788; Mm.173271; Mm.361788; Mm.173271; Mm.361788; Mm.173271; Mm.361788 6 6 G1 ATF7IP 55729 0 GAAGAGTCAAGACCGCATTATGG CTGAAATTTAGTGGCATCACAAC 5 12 10 1.1.2.1.10.12 BCBC-5B-0 14131936 P220300 Glt8d1 ProximalPromoter P220300 ProximalPromoter Unique Tile chr14:29829743-29830716 (+) NM_029626 + 2 29830714 76485 Glt8d1 2410004H05Rik|5430414N14Rik|AI450005 glycosyltransferase 8 domain containing 1 MGI:1923735 Mm.8766 14 14 B GLT8D1 55830 NM_026911 - 344 29830372 69019 Spcs1 1 CAGCCACGTACCCGTAGATAAAC CTAGTTTGACTGTGCCTCCCTCT 5 12 11 1.1.2.1.11.12 BCBC-5B-0 14131955 P221422 Atad1 Enhancer P221422 Enhancer Unique Tile chr19:32777190-32778124 (-) NM_026487 - 156 32778280 67979 Atad1 4921525H23Rik|AW107648 ATPase family, AAA domain containing 1 MGI:1915229 Mm.27123; Mm.406223; Mm.427192; Mm.27123; Mm.406223; Mm.427192; Mm.27123; Mm.406223; Mm.427192; Mm.27123; Mm.406223; Mm.427192; Mm.27123; Mm.406223; Mm.427192; Mm.27123; Mm.406223; Mm.427192; Mm.27123; Mm.406223; Mm.427192; Mm.27123; Mm.406223; Mm.427192; Mm.27123; Mm.406223; Mm.427192; Mm.27123; Mm.406223; Mm.427192; Mm.27123; Mm.406223; Mm.427192; Mm.27123; Mm.406223; Mm.427192; Mm.27123; Mm.406223; Mm.427192; Mm.27123; Mm.406223; Mm.427192; Mm.27123; Mm.406223; Mm.427192; Mm.27123; Mm.406223; Mm.427192; Mm.27123; Mm.406223; Mm.427192; Mm.27123; Mm.406223; Mm.427192 19 19 C3 ATAD1 84896 NM_008960 + 45449 32823573 19211 Pten 0 ATCCAGCGGATTAACCTCCAAG GTAGAGGCAAGCAGATCTCCAAA 5 12 12 1.1.2.1.12.12 BCBC-5B-0 14131974 P222262 Olfr772 ProximalPromoter P222262 ProximalPromoter Duplication Tile chr10:128577950-128579039 (-) NM_146266 - 18 128577968 257666 Olfr772 GA_x5J8B7W1NLL-1408-2343|MOR114-3 olfactory receptor 772 MGI:3030606 Mm.377270 10 10 D3 NM_207008 - 11329 128590368 257664 Olfr773-ps1 0 GAAAGGGCCATGGAAAAATAAAG TGACAGTGTGGTTCCTCATCACT 5 12 13 1.1.2.1.13.12 BCBC-5B-0 14131993 P223012 1700120K04Rik Enhancer P223012 Enhancer Unique Tile chr7:127398206-127399119 (-) NM_026628 - 2616 127395590 68232 1700120K04Rik - RIKEN cDNA 1700120K04 gene MGI:1915482 Mm.347960 7 7 F3 NM_177226 - 6462 127405581 320683 Zfp629 0 ACAGAGACAGCCTTGCTGAAGTC TCAACTATTCAACATGACCACGG 5 12 14 1.1.2.1.14.12 BCBC-5B-0 14132012 P224134 Il22 ProximalPromoter P224134 ProximalPromoter Unique Tile chr10:117606916-117607928 (+) NM_016971 + 6 117607934 50929 Il22 IL-22|IL-TIF|Iltif interleukin 22 MGI:1355307 Mm.425660 10 10 67.0 cM IL22 50616 NM_054079 + 28 117607956 116849 Iltifb 2 TCAGGTGCTATCTGGGATTCAGT AGAGCAAAAGGCAAAAACATCAG 5 12 15 1.1.2.1.15.12 BCBC-5B-0 14132031 P224884 1700023E05Rik ProximalPromoter P224884 ProximalPromoter Unique Tile chr5:78089731-78090653 (+) NM_027970 + 144 78090797 71868 1700023E05Rik - RIKEN cDNA 1700023E05 gene MGI:1919118 Mm.151092 5 5 E1 NM_206935 + 10902 78078829 384185 Arl9 0 GGCCCTAACAAGGCTACAAAACT GTGAAGGGAGACAACTCAACCAC 5 12 16 1.1.2.1.16.12 BCBC-5B-0 14132050 P225724 ProximalPromoter P225724 ProximalPromoter Unique Tile chr4:60556470-60557376 (-) 0 TCAGGTGAAGTCCAATGTTCTCA TCAGGACCACATCTTTCTTGTGA 5 12 17 1.1.2.1.17.12 BCBC-5B-0 14132069 P227528 Pdx1 P227528 Pdx1 Unique Tile chr15:73875668-73876621 (+) 0 CTCTTAGCCCACAGAAGCCATTA AGCCAGTAAGGCTGACTACCTCC 5 12 18 1.1.2.1.18.12 BCBC-5B-0 14132088 P227414 Pdx1 P227414 Pdx1 Unique Tile chr13:91307935-91308880 (+) 0 ACACTACCCAGAAGGACCTCTCC TCAGTGTTCTCTGCTTGGTCATC 5 12 19 1.1.2.1.19.12 BCBC-5B-0 14132107 P003124 Blank P003124 Buffer Control Negative Blank 5 12 20 1.1.2.1.20.12 BCBC-5B-0 14131747 P211190 PufferfishHuman P211190 PufferfishHuman Unique Tile chr2:114747679-114748690 (+) 0 GCTCTGTGCTGACTCTGAAACAA TCACCTTCTGTTCAGTTTCCTCC 5 13 1 1.1.2.1.1.13 BCBC-5B-0 14131766 P212312 miRNA P212312 miRNA Unique Tile chr12:110183390-110184333 (+) mmu-mir-134 0 CCATTCTGTGTCTACTCCCAAGG ACTTAAGCTTTCTCAGCTGGGCT 5 13 2 1.1.2.1.2.13 BCBC-5B-0 14131785 P213062 Gja5 Enhancer P213062 Enhancer Unique Tile chr3:97119147-97120204 (+) NM_008121 + 1327 97117820 14613 Gja5 5730555N10Rik|Cnx40|Cx40|Gja-5 gap junction membrane channel protein alpha 5 MGI:95716 Mm.281816; Mm.358911; Mm.281816; Mm.358911; Mm.281816; Mm.358911; Mm.281816; Mm.358911; Mm.281816; Mm.358911; Mm.281816; Mm.358911; Mm.281816; Mm.358911 3 3 F2.1|3 45.6 cM GJA5 2702 0 ATTCACTGCTAGAGGGACACTGC GCTGGATCTTTTCTTGCCAGTTA 5 13 3 1.1.2.1.3.13 BCBC-5B-0 14131804 P213902 Igf2 Enhancer P213902 Enhancer Unique Tile chr7:142467926-142468731 (-) NM_010514 - 148 142468879 16002 Igf2 AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2 insulin-like growth factor 2 MGI:96434 Mm.3862 7 7 F5|7 69.09 cM IGF2 3481 NM_008387 - 20367 142489098 16334 Ins2 1 CTCGCTGCTGCTAACTCCTGT GCGTCTCTTCTGCTTCTTTAGGG 5 13 4 1.1.2.1.4.13 BCBC-5B-0 14131823 P215024 Rhot1 Enhancer P215024 Enhancer Unique Tile chr11:80025472-80026392 (+) NM_021536 + 138 80025334 59040 Rhot1 2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|FLJ11040|Miro1 ras homolog gene family, member T1 MGI:1926078 Mm.261491 11 11 B5|11 47.26 cM RHOT1 55288 NM_028019 + 25387 80000085 71956 Rnf135 0 AGCCTCCGACATGAAGAAAGAC ATACTGCATTCCTATCAGCCAGC 5 13 5 1.1.2.1.5.13 BCBC-5B-0 14131842 P215774 Slc25a22 Enhancer P215774 Enhancer Unique Tile chr7:141289903-141290809 (-) NM_026646 - 965 141288938 68267 Slc25a22 1300006L01Rik|AI060884 solute carrier family 25 (mitochondrial carrier, glutamate), member 22 MGI:1915517 Mm.33729 7 7 F5 SLC25A22 79751 NM_022654 - 3866 141294675 57913 Lrdd 0 GTCCTTTTATCGGGGTTCACTTC GTAAGCCTAGGCCTGTGCAGACT 5 13 6 1.1.2.1.6.13 BCBC-5B-0 14131861 P216896 Ube2d1 Enhancer P216896 Enhancer Unique Tile chr10:70679298-70680266 (-) NM_145420 - 267 70680533 216080 Ube2d1 MGC28550|UBCH5 ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast) MGI:2384911 Mm.270530 10 10 B5.3 UBE2D1 7321 NM_009360 - 45954 70633344 21780 Tfam 0 AAGGTCTGGGTACTTGGAACCTC CTGTCCTCAGTACCGAAAGATGC 5 13 7 1.1.2.1.7.13 BCBC-5B-0 14131880 P217736 Ppm1l Enhancer P217736 Enhancer Unique Tile chr3:69405858-69406859 (+) NM_178726 + 1012 69404846 242083 Ppm1l 3222401G13|5930404J21Rik|AI481720|AW045850|KIAA4175|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175 protein phosphatase 1 (formerly 2C)-like MGI:2139740 Mm.40577 3 3 E1 PPM1L 151742 1 GTCCATCTTCGGAATCTTTGATG AGGAGGAAGACGGATAAGAATGC 5 13 8 1.1.2.1.8.13 BCBC-5B-0 14131899 P218404 Tha1 Enhancer P218404 Enhancer Unique Tile chr11:117687912-117688855 (-) NM_027919 - 716 117689571 71776 Tha1 1300017K07Rik|GLY1 threonine aldolase 1 MGI:1919026 Mm.3200 11 11 E2 THA1P 390816 NM_001012273;NM_009689; + 22504 117665408 11799 Birc5 0 TGGCTGACTTCACAAAGACAAAA AGGAGGATAACTGAGTTGGAGGG 5 13 9 1.1.2.1.9.13 BCBC-5B-0 14131918 P219526 Cyp4a10 ProximalPromoter P219526 ProximalPromoter Inter Repeats Tile chr4:115015267-115016239 (+) NM_010011 + 6 115016233 13117 Cyp4a10 AI647584|Cyp4a|D4Rp1|RP1 cytochrome P450, family 4, subfamily a, polypeptide 10 MGI:88611 Mm.10742 4 4 D1|4 49.5 cM NM_201640 + 8 115016247 545670 BC013476 0 TTGATTTGGTCCTGTTGAAGACA TCTGTTGCTGTCCTCACTCTCAC 5 13 10 1.1.2.1.10.13 BCBC-5B-0 14131937 P220276 V1rg11 ProximalPromoter P220276 ProximalPromoter Unique Tile chr7:11268770-11269711 (-) NM_134233 - 142 11268628 171267 V1rg11 - vomeronasal 1 receptor, G11 MGI:2159655 Mm.430726 7 7 A1 NM_134209 - 40778 11227992 171243 V1rg8 0 ATGTGTCCAGTGAAGCAGTCAAA CATCAAATGGGAGTAAGGCAAAG 5 13 11 1.1.2.1.11.13 BCBC-5B-0 14131956 P221116 B230218O03 ProximalPromoter P221116 ProximalPromoter Unique Tile chr2:6458727-6459632 (-) NM_183219 - 20 6458747 329333 B230218O03 - hypothetical protein B230218O03 Mm.374900 2 2 A1 0 TACGCATTTTGTACCAGTGGGAT TGAAGGTAGATGAAGAAGCCCTG 5 13 12 1.1.2.1.12.13 BCBC-5B-0 14131975 P222238 Gars ProximalPromoter P222238 ProximalPromoter Unique Tile chr6:54966508-54967442 (+) NM_180678 + 136 54967578 353172 Gars Sgrp23 glycyl-tRNA synthetase MGI:2449057 Mm.250004 6 6 B3 GARS 2617 NM_026637 - 44063 54922445 68252 A030007L17Rik 0 AAGCAACTTGGAAGCAAATGAAG TGCTCAAAAATGTGTGAAGAGGA 5 13 13 1.1.2.1.13.13 BCBC-5B-0 14131994 P222988 Znrf2 ProximalPromoter P222988 ProximalPromoter Unique Tile chr6:54745262-54746209 (+) NM_199143 + 284 54746493 387524 Znrf2 1190002C14Rik|AU044205|D6Ertd365e|MGC129274|MGC129275 zinc and ring finger 2 MGI:1196246 Mm.286149; Mm.392146; Mm.286149; Mm.392146; Mm.286149; Mm.392146; Mm.286149; Mm.392146; Mm.286149; Mm.392146; Mm.286149; Mm.392146; Mm.286149; Mm.392146; Mm.286149; Mm.392146; Mm.286149; Mm.392146; Mm.286149; Mm.392146; Mm.286149; Mm.392146 6 6 B3|6 26.0 cM ZNRF2 223082 0 CTTCGTCTGATCTTCAGTCTGGG TGCTCTAGCTCTGCCCTACAACT 5 13 14 1.1.2.1.14.13 BCBC-5B-0 14132013 P224110 Cabyr Enhancer P224110 Enhancer Unique Tile chr18:12885256-12886215 (+) NM_027687;NM_001042419;NM_181731;NM_001042420;NM_001042418; + 712 12884544 71132 Cabyr 1700016C01Rik|4933421A18Rik|CBP86|FSP-2|MGC130217|MGC130218 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) MGI:1918382 Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275 18 18 A2 CABYR 26256 0 ACTAAGCCATTTCACTTAGCCCC AGATGCACGAGAAGAGAAACACC 5 13 15 1.1.2.1.15.13 BCBC-5B-0 14132032 P224950 Dtx3l ProximalPromoter P224950 ProximalPromoter Unique Tile chr16:35858698-35859723 (-) NM_001013371 - 31 35858667 209200 Dtx3l AU042200|BC023741|MGC103262 deltex 3-like (Drosophila) MGI:2656973 Mm.390852 16 16 B3 DTX3L 151636 NM_030253 + 88 35858786 80285 Parp9 0 AGAGGGCAGTATTGCTTTCACAC CTAAAGACCCGAGAGGCAAAGTT 5 13 16 1.1.2.1.16.13 BCBC-5B-0 14132051 P225700 ProximalPromoter P225700 ProximalPromoter No Hits Tile 0 ggacccattcaattcagagtcac attctccaagtccacctcctttc 5 13 17 1.1.2.1.17.13 BCBC-5B-0 14132070 P227504 Nmt1 Pdx1 P227504 Pdx1 Unique Tile chr11:102843304-102844255 (+) NM_008707 + 393 102844648 18107 Nmt1 AW536594 N-myristoyltransferase 1 MGI:102579 Mm.10265; Mm.391645; Mm.10265; Mm.391645; Mm.10265; Mm.391645; Mm.10265; Mm.391645; Mm.10265; Mm.391645; Mm.10265; Mm.391645; Mm.10265; Mm.391645; Mm.10265; Mm.391645; Mm.10265; Mm.391645; Mm.10265; Mm.391645; Mm.10265; Mm.391645 11 11 D NMT1 4836 NM_026551 - 10067 102833237 68087 Dcakd 0 AGGGACAGAAGCATTTAGGCAAT ACCGTTACCATTCCTGGGTAAGT 5 13 18 1.1.2.1.18.13 BCBC-5B-0 14132089 P227390 C030006K11Rik Pdx1 P227390 Pdx1 Unique Tile chr15:76574488-76575431 (+) NM_176828;NM_145472; - 23393 76551095 223665 C030006K11Rik 1110033I13Rik|MGC38904 RIKEN cDNA C030006K11 gene Mm.291713 15 15 D3 NM_198119 - 25060 76549428 378937 Lrrc24 0 AGTCCCAACACTGGTTTTGATGT TCCCAGGTCCTCTACACTAGCAG 5 13 19 1.1.2.1.19.13 BCBC-5B-0 14132108 P002422 Stratagene PCR 8 P002422 Spike Control Negative Stratagene PCR 8 5 13 20 1.1.2.1.20.13 BCBC-5B-0 14131748 P211166 PufferfishHuman P211166 PufferfishHuman Unique Tile chr19:55680229-55681252 (+) 0 TTCTCTCTCTCCCTCTCCCTCTC AACCACACTCTCAGCTGAAGGAC 5 14 1 1.1.2.1.1.14 BCBC-5B-0 14131767 P212288 miRNA P212288 miRNA Unique Tile chr12:110181795-110182782 (-) mmu-mir-134 0 CACTAGAAGAGAGGAGAGCCGTG GTTACCTGAGCATCTGATCCACC 5 14 2 1.1.2.1.2.14 BCBC-5B-0 14131786 P213128 Hspa4 Enhancer P213128 Enhancer Unique Tile chr11:53142386-53143299 (-) NM_008300 - 513 53143812 15525 Hspa4 70kDa|AI317151|APG-2|Hsp110|Hsp70RY|KIAA4025|mKIAA4025 heat shock protein 4 MGI:1342292 Mm.239865 11 11 B1.3|11 29.0 cM HSPA4 3308 NM_026479 + 24808 53168107 67966 Zcchc10 0 CAGGAGCAGGAACTGAAAGAGAA TGAACCCAAAAACAACAGAGCTT 5 14 3 1.1.2.1.3.14 BCBC-5B-0 14131805 P213878 Hmox1 Enhancer P213878 Enhancer End Repeat Tile chr8:77985085-77986003 (+) NM_010442 + 3690 77989693 15368 Hmox1 D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32 heme oxygenase (decycling) 1 MGI:96163 Mm.276389 8 8 C1|8 35.0 cM HMOX1 3162 NM_008566 + 19672 78005675 17218 Mcm5 1 GTAGCCAAGAGCAGTTGAACGAT TGTGTGTGTGTGTGTGTGTGTGT 5 14 4 1.1.2.1.4.14 BCBC-5B-0 14131824 P215000 Tnni1 Enhancer P215000 Enhancer Unique Tile chr1:137616581-137617680 (+) NM_021467 + 338 137616243 21952 Tnni1 2700018B22Rik|AI747285 troponin I, skeletal, slow 1 MGI:105073 Mm.44379 1 1 E4|1 60.0 cM TNNI1 7135 NM_133664 + 17328 137635008 16763 Lad1 0 GGAGGAGGATTAGGTTAAAGGCA CATTCCGTAGTCACCCTTCTCAG 5 14 5 1.1.2.1.5.14 BCBC-5B-0 14131843 P215750 Yeats4 Enhancer P215750 Enhancer Unique Tile chr10:116627503-116628421 (-) NM_026570 - 162 116628583 64050 Yeats4 4930573H17Rik|B230215M10Rik|GAS41|NuBI-1 YEATS domain containing 4 MGI:1927224 Mm.233529 10 10 D2 YEATS4 8089 NM_029906 - 14295 116642716 77397 9530003J23Rik 0 ATATGTTCAAGAGAATGGCGGAA TATTGCATTTCAGGGCTTTAGGA 5 14 6 1.1.2.1.6.14 BCBC-5B-0 14131862 P216590 Eif3s9 Enhancer P216590 Enhancer Unique Tile chr5:140667890-140668880 (+) NM_133916 + 2898 140671778 27979 Eif3s9 AL033316|AL033334|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|PRT1 eukaryotic translation initiation factor 3, subunit 9 (eta) Mm.21671 5 5 G2|5 82.0 cM NM_172277 - 26165 140641725 231834 Snx8 0 ACAGTGAAACCTTGCACATGAGA CTTCCAGAGGTCCTGAGTTCAAA 5 14 7 1.1.2.1.7.14 BCBC-5B-0 14131881 P217712 B3galnt2 Enhancer P217712 Enhancer Unique Tile chr13:13747136-13748060 (+) NM_178640 + 334 13746802 97884 B3galnt2 A930105D20Rik|C80633|D230016N13Rik|MGC103263 UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2 MGI:2145517 Mm.21686 13 13 A1 B3GALNT2 148789 0 CGGAACAAGCGAGTCTTTCTTTA TTAGGTGGCCAAGCATTTTGTAT 5 14 8 1.1.2.1.8.14 BCBC-5B-0 14131900 P218380 1110008K04Rik Enhancer P218380 Enhancer Unique Tile chr3:92940513-92941517 (-) NM_028628 - 3824 92936689 73730 1110008K04Rik AI415426 RIKEN cDNA 1110008K04 gene MGI:1920980 Mm.291773 3 3 F1 0 CAGATGGTTACACCTTGCTTTCC TCAAGCCAATCTGCATTTCCTAT 5 14 9 1.1.2.1.9.14 BCBC-5B-0 14131919 P219502 Rnf8 Enhancer P219502 Enhancer Unique Tile chr17:29337442-29338367 (+) NM_021419 + 3475 29341842 58230 Rnf8 3830404E21Rik|AIP37 ring finger protein 8 MGI:1929069 Mm.305994 17 17 A3.3 NM_028791 + 49245 29387612 74157 1300018I05Rik 0 TGTACACCTTGAGCTACACCCAA AGAGTCTCACGTGACTCAGGCTT 5 14 10 1.1.2.1.10.14 BCBC-5B-0 14131938 P220342 Olfr564 ProximalPromoter P220342 ProximalPromoter Unique Tile chr7:102676382-102677331 (+) NM_146359 + 31 102677300 258356 Olfr564 MOR14-10 olfactory receptor 564 MGI:3030398 Mm.377453 7 - NM_147092 + 28036 102648346 259096 Olfr561 1 GAAGCAGAGGCAGTGATGATTTT AAGAAGCTGTGGTGTTCTGGAAG 5 14 11 1.1.2.1.11.14 BCBC-5B-0 14131957 P221092 Pdc ProximalPromoter P221092 ProximalPromoter Unique Tile chr1:152080748-152081701 (+) NM_024458 + 53 152081648 20028 Pdc Rpr-1|Rpr1 phosducin MGI:98090 Mm.47709 1 1 G1|1 80.0 cM PDC 5132 0 CCCTCTAAAGCAGTGGTCTTCAA GGGTCTCTGTTCCTGGTGTTCTA 5 14 12 1.1.2.1.12.14 BCBC-5B-0 14131976 P222214 Klrc3 ProximalPromoter P222214 ProximalPromoter Duplication Tile chr6:129609007-129610079 (-) NM_021378 - 26 129608981 58179 Klrc3 Nkg2e killer cell lectin-like receptor subfamily C, member 3 MGI:1929720 Mm.358684 6 6 F3 KLRC3 3823 NM_010653 - 16303 129626382 16642 Klrc2 2 TGTCCTGCCATGTAAAGATGAGA GATATCAATTCTGGGCTCTGTGG 5 14 13 1.1.2.1.13.14 BCBC-5B-0 14131995 P222964 Dnase1 ProximalPromoter P222964 ProximalPromoter Unique Tile chr16:3951317-3952293 (+) NM_010061 + 35 3952328 13419 Dnase1 AI788650|DNase I|DNaseI|Dnl1|MGC144446|MGC144447 deoxyribonuclease I MGI:103157 Mm.390883 16 16 A1-3|16 1.7 cM DNASE1 1773 NM_177472 - 34409 3916908 52864 Btbd12 0 GAAGTGTAAGGGCTGGAGTCAGA CAAGAGCACAGAACAATAGGGCT 5 14 14 1.1.2.1.14.14 BCBC-5B-0 14132014 P223804 Trp73 ProximalPromoter P223804 ProximalPromoter Unique Tile chr4:152960491-152961436 (-) NM_011642 - 19631 152940860 22062 Trp73 p73 transformation related protein 73 MGI:1336991 Mm.78015 4 4 E2|4 82.0 cM TP73 7161 NM_021499 + 24735 152986171 59002 Wdr8 0 CTCTGCTGGATGTTTGTAAACCC CTACCAGGCTTACGGGTATTGTG 5 14 15 1.1.2.1.15.14 BCBC-5B-0 14132033 P224926 Trspap1 ProximalPromoter P224926 ProximalPromoter Unique Tile chr4:131601713-131602637 (-) NM_027925 - 99 131601614 71787 Trspap1 1110007F05Rik|Secp43 tRNA selenocysteine associated protein 1 MGI:1919037 Mm.239183 4 4 D3 TRSPAP1 54952 NM_133878 - 15101 131617738 100088 Rcc1 0 TAGTTGGCCTCTGGTTTTCAGAC CTCTGAAGAGGGTCTCTGTGGG 5 14 16 1.1.2.1.16.14 BCBC-5B-0 14132052 P225676 Slamf8 ProximalPromoter P225676 ProximalPromoter Unique Tile chr1:174427081-174428058 (-) NM_029084 - 82 174427163 74748 Slamf8 5830408F06Rik|Blame|SBBI42 SLAM family member 8 MGI:1921998 Mm.179812 1 1 H2 SLAMF8 56833 NM_177723 + 30501 174396580 240916 A030011M19 0 GAGAGTGCCTACCATTAACGTGG GAGAAGAAGACTCCAGAGGGACC 5 14 17 1.1.2.1.17.14 BCBC-5B-0 14132071 P227480 Usp7 Pdx1 P227480 Pdx1 Unique Tile chr16:8645810-8646759 (+) NM_001003918 - 6847 8653606 252870 Usp7 2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp ubiquitin specific peptidase 7 MGI:2182061 Mm.295330; Mm.392837; Mm.295330; Mm.392837; Mm.295330; Mm.392837; Mm.295330; Mm.392837; Mm.295330; Mm.392837; Mm.295330; Mm.392837; Mm.295330; Mm.392837; Mm.295330; Mm.392837; Mm.295330; Mm.392837; Mm.295330; Mm.392837; Mm.295330; Mm.392837 16 16 A1 USP7 7874 0 AGGCTTGCCTGGTCTACATAACA CAACCCTCTAGAAATTGGCTGTG 5 14 18 1.1.2.1.18.14 BCBC-5B-0 14132090 P227456 Pdx1 P227456 Pdx1 Unique Tile chr15:84225134-84226081 (+) 1 ACCACCCCTTATCCTTGTTCACT TGGAGACAAGAGTCTCCTCCAAC 5 14 19 1.1.2.1.19.14 BCBC-5B-0 14132109 P002398 Stratagene PCR 6 P002398 Spike Control Negative Stratagene PCR 6 5 14 20 1.1.2.1.20.14 BCBC-5B-0 14131749 P211142 PufferfishHuman P211142 PufferfishHuman Unique Tile chr7:136338369-136339412 (-) 0 TACAGAGAGCAGCCATCTCAGTG TGTGTCCTTAAAGCGGCATATTT 5 15 1 1.1.2.1.1.15 BCBC-5B-0 14131768 P211982 PufferfishHuman P211982 PufferfishHuman Unique Tile chr7:37223543-37224442 (-) 0 CAAAGAACAGCTGGTGCTCCTAT TTTTCTTTCCCTGGCAAGATGTA 5 15 2 1.1.2.1.2.15 BCBC-5B-0 14131787 P213104 Hells Enhancer P213104 Enhancer Unique Tile chr19:38994129-38995031 (+) NM_008234 + 1102 38996133 15201 Hells AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8 helicase, lymphoid specific MGI:106209 Mm.392920; Mm.57223; Mm.392920; Mm.57223; Mm.392920; Mm.57223; Mm.392920; Mm.57223; Mm.392920; Mm.57223; Mm.392920; Mm.57223; Mm.392920; Mm.57223; Mm.392920; Mm.57223; Mm.392920; Mm.57223; Mm.392920; Mm.57223; Mm.392920; Mm.57223; Mm.392920; Mm.57223; Mm.392920; Mm.57223 19 19 C3-D1 HELLS 3070 0 ACCCTGGAGAACGGAATGTTAAT CCCCCTGGTCTAGAACTTGCTAT 5 15 3 1.1.2.1.3.15 BCBC-5B-0 14131806 P213854 Gsc Enhancer P213854 Enhancer Unique Tile chr12:104876689-104877646 (-) NM_010351 - 2403 104874286 14836 Gsc - goosecoid MGI:95841 Mm.129 12 12 E|12 52.0 cM GSC 145258 0 CCCTCTGAAAGATAGCCAGATGA GTTCAAGACCTAACATTGCCACC 5 15 4 1.1.2.1.4.15 BCBC-5B-0 14131825 P214976 Prokr1 Enhancer P214976 Enhancer Unique Tile chr6:87554875-87555827 (-) NM_021381 - 515 87556342 58182 Prokr1 EG-VEGFR1|Gpr73|Pkr1 prokineticin receptor 1 MGI:1929676 Mm.333226 6 6 D1 PROKR1 10887 0 GAAAGAACTGTGAGAGGGCTCAG CACTCCAATGAAAACCAAAAAGC 5 15 5 1.1.2.1.5.15 BCBC-5B-0 14131844 P215816 2810441K11Rik Enhancer P215816 Enhancer Unique Tile chr19:10621833-10622760 (-) NM_026798 - 11 10622771 68642 2810441K11Rik 1110017C22Rik|4921533J23Rik|A930021F15Rik|AI482550 RIKEN cDNA 2810441K11 gene MGI:1920020 Mm.31236 19 19 A MGC13379 51259 NM_028411 - 19783 10642543 72982 Tmem138 0 GAGGTGAGACTCTGGAGGTGTGT AAGTCCTGACTCTGCCAAATGAC 5 15 6 1.1.2.1.6.15 BCBC-5B-0 14131863 P216566 Creb1 Enhancer P216566 Enhancer Unique Tile chr1:64467280-64468273 (+) NM_009952;NM_133828; + 111 64467169 12912 Creb1 2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1 cAMP responsive element binding protein 1 MGI:88494 Mm.422634 1 1 C2|1 31.0 cM CREB1 1385 1 AGGAGCTTGTACCACCGGTAAG AACTGTTTTCAAGCACCAGCTTC 5 15 7 1.1.2.1.7.15 BCBC-5B-0 14131882 P217688 Vkorc1 Enhancer P217688 Enhancer Unique Tile chr7:127688088-127689007 (-) NM_178600 - 1323 127686765 27973 Vkorc1 D7Wsu86e vitamin K epoxide reductase complex, subunit 1 MGI:106442 Mm.29703 7 7 F3|7 61.0 cM VKORC1 79001 NM_009739 + 6213 127695220 12041 Bckdk 0 AACAAACGTTTAGCTATGCGAGC ATGACAAACTAGCTGCCCTTGAG 5 15 8 1.1.2.1.8.15 BCBC-5B-0 14131901 P218356 Mro ProximalPromoter P218356 ProximalPromoter Unique Tile chr18:73983759-73984736 (+) NM_027741 + 19 73984755 71263 Mro 4930507C04Rik|4933435E20Rik Maestro MGI:2152817 Mm.126220 18 18 E2 MRO 83876 NM_145494 - 42998 73940761 107029 Me2 0 GCCTTCTGAGTGTTGGGATTAAA GCTATCCTTCAAGAAAGCCCCTA 5 15 9 1.1.2.1.9.15 BCBC-5B-0 14131920 P219196 Olfr818 ProximalPromoter P219196 ProximalPromoter Unique Tile chr10:129348943-129349975 (-) NM_146777 - 66 129349009 258773 Olfr818 MOR110-2 olfactory receptor 818 MGI:3030652 Mm.337276 10 - NM_146269 - 28541 129378516 258266 Olfr247 0 GCTTTGAATTGCTTAGCATGGAC TTTGTAGCTGAGGGTCTCCTGTC 5 15 10 1.1.2.1.10.15 BCBC-5B-0 14131939 P220318 St8sia1 ProximalPromoter P220318 ProximalPromoter Unique Tile chr6:142921375-142922289 (-) NM_011374 - 299 142921674 20449 St8sia1 9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 MGI:106011 Mm.260838 6 6 G3|6 60.0 cM ST8SIA1 6489 0 TACAGAGGCGTTATCTCCTCCAA TGTGTCCCTTCCAGAAAGAGATG 5 15 11 1.1.2.1.11.15 BCBC-5B-0 14131958 P221068 Dixdc1 ProximalPromoter P221068 ProximalPromoter Unique Tile chr9:50480193-50481103 (-) NM_178118 - 12 50480205 330938 Dixdc1 4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|MGC61302|mKIAA1735 DIX domain containing 1 MGI:2679721 Mm.82598 9 9 B DIXDC1 85458 NM_025865 - 17648 50498751 66952 2310030G06Rik 1 GTGAGTTCTCCCTTTCCACCTTT AAACCTAGACCCGAGCCAAACTA 5 15 12 1.1.2.1.12.15 BCBC-5B-0 14131977 P222190 BC067068 ProximalPromoter P222190 ProximalPromoter Unique Tile chr10:105245358-105246264 (-) NM_207522 - 106 105245464 216292 BC067068 - cDNA sequence BC067068 MGI:3041259 Mm.250875 10 10 D1 C12orf26 84190 NM_025602 + 230 105245588 52713 Ccdc59 0 AACACAACACAAAACAAAAGGGG CTGTAACTTGTCGTGCAGCGT 5 15 13 1.1.2.1.13.15 BCBC-5B-0 14131996 P223030 Kcnrg ProximalPromoter P223030 ProximalPromoter Unique Tile chr14:60560471-60561530 (+) NM_001039105;NM_206974; + 36 60561566 328424 Kcnrg E030012H22Rik|Gm745 potassium channel regulator MGI:2685591 Mm.224464 14 14 D1 KCNRG 283518 NM_023233 + 6806 60553665 66597 Trim13 0 TGGATTCCCAAGTTGGTTTTAGA AGGAAACAGGGGAGTGGAGATAG 5 15 14 1.1.2.1.14.15 BCBC-5B-0 14132015 P223780 Crybb3 Enhancer P223780 Enhancer Unique Tile chr5:113322540-113323634 (-) NM_021352 - 1584 113320956 12962 Crybb3 AI852419 crystallin, beta B3 MGI:102717 Mm.378899 5 5 F|5 60.0 cM CRYBB3 1417 NM_007773 - 13471 113309069 12961 Crybb2 2 TAAACAGCCTTGGTGGAGATGTT TAGACCAGGCTGACCTTGAACTC 5 15 15 1.1.2.1.15.15 BCBC-5B-0 14132034 P224902 Upk1a ProximalPromoter P224902 ProximalPromoter Unique Tile chr7:30321353-30322299 (-) NM_026815 - 141 30321494 109637 Upk1a 1110031P12Rik|AU019298|C87192|Tspan21|Upk1 uroplakin 1A MGI:98911 Mm.25471 7 7 B1|7 10.0 cM UPK1A 11045 NM_025628 - 12555 30334854 110323 Cox6b1 0 GTCTCGAACCCATAATCCTCCTT AGTCCAACAGCTTAGCAGTGAGC 5 15 16 1.1.2.1.16.15 BCBC-5B-0 14132053 P225652 Tdpoz2 ProximalPromoter P225652 ProximalPromoter Unique Tile chr3:93738067-93738967 (-) NM_001007222 - 0 93738067 399673 Tdpoz2 - TD and POZ domain containing 2 MGI:3027902 Mm.377260 3 3 F2.1 NM_148949 - 22705 93761672 207213 Tdpoz1 0 GCCTTTAAGAATTGGAGGCATCT TTTCTGCTGGAGGTACTTTGGAG 5 15 17 1.1.2.1.17.15 BCBC-5B-0 14132072 P226694 Pdx1 P226694 Pdx1 Unique Tile chr7:113857986-113858900 (+) 0 TAGCCTCAGTCTGCGAACTCTCT TGAACCCTTAGCTTCTCGATTTG 5 15 18 1.1.2.1.18.15 BCBC-5B-0 14132091 P227432 Rock2 Pdx1 P227432 Pdx1 Unique Tile chr12:16884826-16885772 (+) NM_009072 + 34897 16920669 19878 Rock2 B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|mKIAA0619 Rho-associated coiled-coil containing protein kinase 2 MGI:107926 Mm.276024 12 12 A3 ROCK2 9475 NM_033270 + 48248 16836578 50496 E2f6 1 GGTGGAAATAGGACAAAGCACAC CAGGAAGCACAAAGGGAAATGTA 5 15 19 1.1.2.1.19.15 BCBC-5B-0 14132110 P002374 Stratagene PCR 4 P002374 Spike Control Negative Stratagene PCR 4 5 15 20 1.1.2.1.20.15 BCBC-5B-0 14131750 P211208 PufferfishHuman P211208 PufferfishHuman Unique Tile chr4:98797446-98798508 (-) 0 TAGGCTCACACCTACAGGAGACC CGGTACCAGGATTTGCATCTAAG 5 16 1 1.1.2.1.1.16 BCBC-5B-0 14131769 P211958 PufferfishHuman P211958 PufferfishHuman Unique Tile chr9:100019656-100020584 (+) 0 CTTGAAGGAAATCATTTGCCAAG TAGGTGCCTGTTTCAAGTTGTCA 5 16 2 1.1.2.1.2.16 BCBC-5B-0 14131788 P213080 Gpx3 Enhancer P213080 Enhancer Unique Tile chr11:54747469-54748448 (+) NM_008161 + 1097 54746372 14778 Gpx3 AA960521|GPx glutathione peroxidase 3 MGI:105102 Mm.200916 11 11 B3-B5 GPX3 2878 NM_008248 + 37593 54709876 15254 Hint1 0 TGTGCTGTCCATAGAATGAAGGA GTGCTAGCTGCCCTAAGAAATGA 5 16 3 1.1.2.1.3.16 BCBC-5B-0 14131807 P213830 Gem Enhancer P213830 Enhancer Unique Tile chr4:11626571-11627616 (+) NM_010276 + 3987 11631603 14579 Gem AV020497 GTP binding protein (gene overexpressed in skeletal muscle) MGI:99844 Mm.247486 4 4 A1|4 2.6 cM GEM 2669 0 TTTCTCTCTGCACGGTCATTACA GCAATTTAGCAATGTAGCCAAGG 5 16 4 1.1.2.1.4.16 BCBC-5B-0 14131826 P214670 Tmem162 Enhancer P214670 Enhancer Unique Tile chr7:30685648-30686743 (-) NM_175240 + 154 30685802 76415 Tmem162 1700020B09Rik transmembrane protein 162 MGI:1923665 Mm.259739 7 7 B1 TMEM162 148109 NM_017405 - 3684 30681964 54135 Lsr 2 CAGCTCCCAGCTCAGACATTATT GGAGAAGGTACCAGTGCTCTCAA 5 16 5 1.1.2.1.5.16 BCBC-5B-0 14131845 P215792 Sycn Enhancer P215792 Enhancer Unique Tile chr7:28252644-28253548 (+) NM_026716 + 3000 28249644 68416 Sycn 0910001K16Rik|1810038B08Rik|SYL syncollin MGI:1915666 Mm.25210 7 7 A3 SYCN 342898 NM_177396 + 21049 28231595 338374 Il28 0 TGAAGAAAAGTCAGAGGGGTGAG TCCATCTACAGATGTAGCCGTCA 5 16 6 1.1.2.1.6.16 BCBC-5B-0 14131864 P216542 Cyfip2 Enhancer P216542 Enhancer Unique Tile chr11:46154580-46155648 (-) NM_133769 - 81 46155729 76884 Cyfip2 1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168 cytoplasmic FMR1 interacting protein 2 MGI:1924134 Mm.154358 11 11 B1.2 CYFIP2 26999 1 TAAGGGACTCTCGGAGACAACAG CTGAGTGCTAGGCAATGGTTCTT 5 16 7 1.1.2.1.7.16 BCBC-5B-0 14131883 P217664 Snx26 Enhancer P217664 Enhancer Unique Tile chr7:30241836-30242816 (-) NM_178252 - 951 30243767 233071 Snx26 AW324378|TCGAP sorting nexin 26 MGI:2673998 Mm.190704 7 7 B1 SNX26 115703 NM_001004161 + 17955 30223881 381868 Gm1082 0 AAAAAGCCCAGTCTAGCAAATCC GGGAACAACAGGAGCATTGTTAT 5 16 8 1.1.2.1.8.16 BCBC-5B-0 14131902 P218422 Fetub Enhancer P218422 Enhancer Unique Tile chr16:22832990-22833937 (+) NM_021564 + 1697 22835634 59083 Fetub 2310011O17Rik|AI255764|D17980|Gugu fetuin beta MGI:1890221 Mm.28461 16 16 B|16 14.1 cM FETUB 26998 NM_013465 + 25573 22807417 11625 Ahsg 0 GTCACTGTTAGGTGTACCTGCCC GTCACATACTCACAGTCCCGTTG 5 16 9 1.1.2.1.9.16 BCBC-5B-0 14131921 P219172 Olfr1283 ProximalPromoter P219172 ProximalPromoter Unique Tile chr2:111168506-111169499 (+) NM_207236 + 27 111169472 228443 Olfr1283 GA_x6K02T2Q125-72420217-72421134|MOR248-19 olfactory receptor 1283 MGI:3031117 Mm.377244 2 2 E3 NM_146381 + 10306 111179805 258379 Olfr1284 0 CGACCCAGGAAATAAATATGCAA CACCACAGTCTGGTTTCCTTCTT 5 16 10 1.1.2.1.10.16 BCBC-5B-0 14131940 P220294 Dcc ProximalPromoter P220294 ProximalPromoter Unique Tile chr18:72476371-72477360 (-) NM_007831 - 424 72475947 13176 Dcc - deleted in colorectal carcinoma MGI:94869 Mm.381105 18 18 E2|18 45.0 cM DCC 1630 1 CTTGCATTTGTGTGTGTGTGTGT GCTCTCACTTGTTACTGGGGTGT 5 16 11 1.1.2.1.11.16 BCBC-5B-0 14131959 P221044 1700019G17Rik Enhancer P221044 Enhancer Unique Tile chr6:85874457-85875401 (-) NM_029331 - 3939 85870518 75541 1700019G17Rik - RIKEN cDNA 1700019G17 gene MGI:1922791 Mm.24454 6 6 C3 NM_023160 - 5840 85881241 66116 Cml1 0 TCTTACTGACCGGTCTTCACACA CATCTCCAAGGAGCAGAGATGTT 5 16 12 1.1.2.1.12.16 BCBC-5B-0 14131978 P221884 2810417J12Rik Enhancer P221884 Enhancer End Repeat Tile chr17:23512527-23513459 (-) NM_029798 - 240 23513699 76917 2810417J12Rik 3010014L17Rik|AW548203 RIKEN cDNA 2810417J12 gene MGI:1924167 Mm.269613 17 17 A3.3 LOC114984 114984 NM_175229 + 17390 23530849 75956 Srrm2 1 TTCTCCATGCTTCCCTTTCATAA AGCCAGGGCTACACAGAGAAAC 5 16 13 1.1.2.1.13.16 BCBC-5B-0 14131997 P223006 Chst11 Enhancer P223006 Enhancer Unique Tile chr10:82416069-82417060 (+) NM_021439 + 774 82415295 58250 Chst11 1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s carbohydrate sulfotransferase 11 MGI:1927166 Mm.360747; Mm.395623; Mm.360747; Mm.395623; Mm.360747; Mm.395623; Mm.360747; Mm.395623; Mm.360747; Mm.395623; Mm.360747; Mm.395623; Mm.360747; Mm.395623 10 10 C1 CHST11 50515 0 AGAAAGGTAGGGCTTGTTGGAAG GCGGCTGAGTCTACTGAAAGTGT 5 16 14 1.1.2.1.14.16 BCBC-5B-0 14132016 P223756 Mcts2 Enhancer P223756 Enhancer Unique Tile chr2:152379395-152380390 (+) NM_025543 + 800 152378595 66405 Mcts2 2400002F11Rik|MGC41042 malignant T cell amplified sequence 2 MGI:1913655 Mm.277327 2 2 G3 NM_010376 + 18456 152360939 14950 H13 0 GGGGTGTTGTAACCACAAGAGAG TAGATGAAGAGTCCTCCGAGCAG 5 16 15 1.1.2.1.15.16 BCBC-5B-0 14132035 P224878 Olfr115 ProximalPromoter P224878 ProximalPromoter Unique Tile chr17:37218820-37219876 (-) NM_001011753 - 12 37218808 257908 Olfr115 MOR218-11P olfactory receptor 115 MGI:2177498 Mm.365050 17 17 B1 NM_146632 - 12810 37232686 258625 Olfr116 0 CATTGAAATGGGTGACCTGAAAT AAATTGTGGTAGCAGCTGGAAAA 5 16 16 1.1.2.1.16.16 BCBC-5B-0 14132054 P225718 Capn11 ProximalPromoter P225718 ProximalPromoter Unique Tile chr17:45122811-45123767 (-) NM_001013767 - 79 45122890 268958 Capn11 calpain|protease calpain 11 MGI:1352490 Mm.426026 17 17 B3 CAPN11 11131 NM_198167 - 7584 45131351 224807 Tmem63b 0 AAAAGCTGTGAGTTTGCTTCTGG CCGTGAGTGCCTTACCTGAGTAG 5 16 17 1.1.2.1.17.16 BCBC-5B-0 14132073 P226670 Pdx1 P226670 Pdx1 Unique Tile chr1:36547563-36548477 (+) 2 GTTTATATGGTGCTGGGGATCAA CAATCCTGAGGTCCTGAGTTCAT 5 16 18 1.1.2.1.18.16 BCBC-5B-0 14132092 P227408 Myh14 Pdx1 P227408 Pdx1 Unique Tile chr7:44557347-44558291 (+) NM_028021 - 23804 44533543 71960 Myh14 2400004E04Rik|II-C|NHMCII|NMHC II-C myosin, heavy polypeptide 14 MGI:1919210 Mm.158289 7 7 B2 MYH14 79784 0 TCTCAACCCAAGGCTGTGATTAT CAGGCAGCTTGTAGTTCAAACCT 5 16 19 1.1.2.1.19.16 BCBC-5B-0 14132111 P002350 Stratagene PCR 2 P002350 Spike Control Negative Stratagene PCR 2 5 16 20 1.1.2.1.20.16 BCBC-5B-0 14131751 P211184 PufferfishHuman P211184 PufferfishHuman Unique Tile chr2:115416659-115417595 (+) 0 TCTTCGGGCTTTCCTTTCTTATC GTGTTAACCCCTAGCAACCCTCT 5 17 1 1.1.2.1.1.17 BCBC-5B-0 14131770 P211934 PufferfishHuman P211934 PufferfishHuman Unique Tile chr14:21245797-21246757 (+) 0 AGGGTGTCTGGTTCACAGAAGAC TGCTTTTCAGGGTATTAAAGCCA 5 17 2 1.1.2.1.2.17 BCBC-5B-0 14131789 P213056 Gcg Enhancer P213056 Enhancer Unique Tile chr2:62281240-62282305 (-) NM_008100 - 2172 62284477 14526 Gcg GLP-1 glucagon MGI:95674 Mm.45494 2 2 C1.3|2 36.0 cM GCG 2641 0 TCACCACAACCCTGGTATCTTCT ACCAATCACGGTTCTCACAGATT 5 17 3 1.1.2.1.3.17 BCBC-5B-0 14131808 P213896 Icam1 Enhancer P213896 Enhancer Unique Tile chr9:20767017-20767820 (+) NM_010493 + 611 20766406 15894 Icam1 CD54|Icam-1|Ly-47|MALA-2|MGC6195 intercellular adhesion molecule Mm.155033 9 9 A3|9 7.0 cM NM_023892 + 11954 20779774 78369 Icam4 0 CAGTCAGAATATGGCTGAGGTGG AGGAGGAAGGAAGTGGTCCTG 5 17 4 1.1.2.1.4.17 BCBC-5B-0 14131827 P214646 Spint1 Enhancer P214646 Enhancer Unique Tile chr2:118931196-118932101 (+) NM_016907 + 2055 118929141 20732 Spint1 HAI-1 serine protease inhibitor, Kunitz type 1 MGI:1338033 Mm.104955 2 2 E5 SPINT1 6692 NM_028104 - 9903 118921293 72112 Ppp1r14d 1 GAGCCTGTTCCACAAGAACCTTA CCTGAAAGACACACACACACACA 5 17 5 1.1.2.1.5.17 BCBC-5B-0 14131846 P215768 Nudt21 Enhancer P215768 Enhancer Unique Tile chr8:96924909-96925923 (-) NM_026623 - 204 96926127 68219 Nudt21 25kDa|3110048P04Rik|5730530J16Rik|AU014860|AW549947|Cpsf5 nudix (nucleoside diphosphate linked moiety X)-type motif 21 MGI:1915469 Mm.28961; Mm.381360; Mm.28961; Mm.381360; Mm.28961; Mm.381360; Mm.28961; Mm.381360; Mm.28961; Mm.381360; Mm.28961; Mm.381360; Mm.28961; Mm.381360; Mm.28961; Mm.381360; Mm.28961; Mm.381360; Mm.28961; Mm.381360; Mm.28961; Mm.381360; Mm.28961; Mm.381360; Mm.28961; Mm.381360; Mm.28961; Mm.381360; Mm.28961; Mm.381360; Mm.28961; Mm.381360; Mm.28961; Mm.381360; Mm.28961; Mm.381360; Mm.28961; Mm.381360; Mm.28961; Mm.381360 8 8 C5 NUDT21 11051 NM_177767 + 443 96926366 270086 Ogfod1 1 GGAGCGCACCATTAATCTGTAAG AGTTTGCGTGCCATTACTTGTTT 5 17 6 1.1.2.1.6.17 BCBC-5B-0 14131865 P216518 2210412D01Rik Enhancer P216518 Enhancer Unique Tile chr7:84026303-84027208 (-) NM_133722 - 870 84028078 70178 2210412D01Rik AL023007 RIKEN cDNA 2210412D01 gene MGI:1917428 Mm.23914 7 7 D3 LOC58489 58489 0 TAGAAGTGACCTTGGGGTTTTCA CCCGCTTCTGACAAATACTTCTG 5 17 7 1.1.2.1.7.17 BCBC-5B-0 14131884 P217358 Phka2 Enhancer P217358 Enhancer Unique Tile chrX:155841718-155842702 (+) NM_172783 + 3609 155846311 110094 Phka2 6330505C01Rik|D330034O08|Phk|k phosphorylase kinase alpha 2 MGI:97577 Mm.350712 X X F3-F4|X 72.0 cM PHKA2 5256 0 TGTTGCAACTGCTACATTCTGGT CTGGGAAAGAAAGATTGCTCAGA 5 17 8 1.1.2.1.8.17 BCBC-5B-0 14131903 P218398 Hapln1 ProximalPromoter P218398 ProximalPromoter Unique Tile chr13:90014059-90014963 (+) NM_013500 + 29 90014992 12950 Hapln1 BB099155|Crtl1|Crtl1l|LP hyaluronan and proteoglycan link protein 1 MGI:1337006 Mm.266790 13 13 C3 HAPLN1 1404 2 CTACTCAAGGCAGGAATCAATGG TGCAGAATGTCTCTTTGTGGTGT 5 17 9 1.1.2.1.9.17 BCBC-5B-0 14131922 P219148 Agbl3 ProximalPromoter P219148 ProximalPromoter Unique Tile chr6:34710032-34711049 (+) NM_178630 + 23 34711026 76223 Agbl3 2900053G10Rik|6530406M24Rik ATP/GTP binding protein-like 3 MGI:1923473 Mm.150047 6 6 B1 AGBL3 340351 1 TTGCTTTGTGAAAGTGTTGGCTA AGTCGAGAGAGCGGTTTCTAGGT 5 17 10 1.1.2.1.10.17 BCBC-5B-0 14131941 P220270 1110004B13Rik Enhancer P220270 Enhancer Unique Tile chr11:68882280-68883375 (+) NM_025838;NM_028336; + 3630 68887005 66910 1110004B13Rik 2810049P21Rik RIKEN cDNA 1110004B13 gene MGI:1914160 Mm.33964 11 11 B3 NM_028005 - 5602 68876678 71923 2310047M10Rik 0 GCGCAGTCTTGTAAACTTTGCTT CGGTAATGAGACGAAGTGAGCTT 5 17 11 1.1.2.1.11.17 BCBC-5B-0 14131960 P221110 Olfr823 ProximalPromoter P221110 ProximalPromoter Unique Tile chr10:129515641-129516622 (-) NM_146673 - 96 129515737 258668 Olfr823 MOR210-4 olfactory receptor 823 MGI:3030657 Mm.377630 10 - NM_146674 - 13382 129530004 258669 Olfr824 0 ACCTTGTAATACTGCAACCCCCT GTAAGAATAAGGGAACCCGTGCT 5 17 12 1.1.2.1.12.17 BCBC-5B-0 14131979 P221860 Tsga10 ProximalPromoter P221860 ProximalPromoter Unique Tile chr1:37809648-37810668 (-) NM_207228 - 23 37809625 211484 Tsga10 4933432N21Rik|Gm217|Mtsga10 testis specific 10 MGI:2685063 Mm.332756 1 1 B TSGA10 80705 NM_001037918 + 6083 37816751 623661 MGC28431 0 GAAAAGAGTGGTTTGGGGGTAAC GTACCTGTCTCGACACGCCCT 5 17 13 1.1.2.1.13.17 BCBC-5B-0 14131998 P222982 Olfr918 ProximalPromoter P222982 ProximalPromoter Unique Tile chr9:38424091-38425104 (-) NM_146375 - 39 38424052 258372 Olfr918 MOR164-3 olfactory receptor 918 MGI:3030752 Mm.377462 9 - NM_001011864 - 7678 38416413 258183 Olfr917 0 TGACTCCTGGAACATCCTGTTTT CATGACAACGGGACCAAAATAAT 5 17 14 1.1.2.1.14.17 BCBC-5B-0 14132017 P223732 Gstt3 ProximalPromoter P223732 ProximalPromoter Unique Tile chr10:75224913-75225871 (-) NM_133994 - 155 75224758 103140 Gstt3 AI118089 glutathione S-transferase, theta 3 MGI:2143526 Mm.5731 10 10 C1 NM_010027 - 7823 75217090 13202 Ddt 0 GAGAGGAGGGGTAGAGGAGACAG CTGAACTATGAGCCCGAGTCTTG 5 17 15 1.1.2.1.15.17 BCBC-5B-0 14132036 P224572 Abcb1b Enhancer P224572 Enhancer Unique Tile chr5:8804294-8805278 (+) NM_011075 + 103 8804191 18669 Abcb1b Abcb1|Mdr1|Mdr1b|Pgy-1|Pgy1|mdr ATP-binding cassette, sub-family B (MDR/TAP), member 1B MGI:97568 Mm.146649 5 5 A2-A3|5 1.0 cM 1 AGGTAGGCAGTTCTCGGAAGAGT GTTTTTAATTACTGGCGACACGC 5 17 16 1.1.2.1.16.17 BCBC-5B-0 14132055 P225694 Tsc22d4 ProximalPromoter P225694 ProximalPromoter Unique Tile chr5:137975825-137976733 (+) NM_023910 + 16 137976717 78829 Tsc22d4 0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2 TSC22 domain family 4 MGI:1926079 Mm.286399 5 5 G2 TSC22D4 81628 NM_175521 - 6039 137969786 243300 6430598A04Rik 0 AGCTGAGAGATACATCCAGTGGG AGTGACTGGAGTACAGAGGGGAG 5 17 17 1.1.2.1.17.17 BCBC-5B-0 14132074 P226646 Cugbp1 Pdx1 P226646 Pdx1 Unique Tile chr2:90800057-90800970 (+) NM_017368;NM_198683; + 18755 90819725 13046 Cugbp1 1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|D2Wsu101e|HNAB50|NAB50 CUG triplet repeat, RNA binding protein 1 MGI:1342295 Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764; Mm.29495; Mm.393354; Mm.423764 2 2 E1|2 47.5 cM CUGBP1 10658 NM_009023 + 35509 90836479 19400 Rapsn 0 ACACTATGCATCCCATCTCTGGT GCTCCCTTCAGACTGGATTTACA 5 17 18 1.1.2.1.18.17 BCBC-5B-0 14132093 P227384 BC023488 Pdx1 P227384 Pdx1 Unique Tile chrX:161522376-161523318 (+) NM_146238 + 1299 161521077 237221 BC023488 B930082C09Rik|MGC32253 cDNA sequence BC023488 MGI:2384300 Mm.209490 X X F5 FAM51A1 54960 0 CTTTAATTGCAGCACATGGGAG TGATTACCAGGTTTCACCCTGTC 5 17 19 1.1.2.1.19.17 BCBC-5B-0 14132112 P002416 Stratagene PCR 7 P002416 Spike Control Negative Stratagene PCR 7 5 17 20 1.1.2.1.20.17 BCBC-5B-0 14131752 P211160 PufferfishHuman P211160 PufferfishHuman Unique Tile chr14:20157333-20158331 (-) 0 AACGACCACATGGAGTTTTGAAT GAATGCCTTTCCTTTCTGAGTGA 5 18 1 1.1.2.1.1.18 BCBC-5B-0 14131771 P211910 PufferfishHuman P211910 PufferfishHuman Unique Tile chr4:123588902-123589869 (-) 0 ACCTCTTTAAGCCAAGCATGAAA AACGAAAGTTGTCAGTGGAGGAG 5 18 2 1.1.2.1.2.18 BCBC-5B-0 14131790 P212750 miRNA P212750 miRNA Unique Tile chr12:110160150-110161126 (+) mmu-mir-411 0 TCAAGGTATTTGAAGATGCGGTT CCATGGCATGATCCTGAAGTTAT 5 18 3 1.1.2.1.3.18 BCBC-5B-0 14131809 P213872 Foxd3 Enhancer P213872 Enhancer Unique Tile chr4:99145047-99146015 (+) NM_010425 + 2301 99148316 15221 Foxd3 CWH3|Genesis|Hfh2 forkhead box D3 MGI:1347473 Mm.4758 4 4 C6|4 45.8 cM FOXD3 27022 0 GTTTATCCTTGCTCACCATTTCG TAGGAAAACCTTTTGCCCAACTT 5 18 4 1.1.2.1.4.18 BCBC-5B-0 14131828 P214622 Uevld Enhancer P214622 Enhancer Unique Tile chr7:46827584-46828678 (-) NM_001040695 - 1035 46826549 54122 Uevld 8430408E05Rik|Attp UEV and lactate/malate dehyrogenase domains MGI:1860490 Mm.1999; Mm.390542; Mm.1999; Mm.390542; Mm.1999; Mm.390542; Mm.1999; Mm.390542; Mm.1999; Mm.390542; Mm.1999; Mm.390542; Mm.1999; Mm.390542; Mm.1999; Mm.390542; Mm.1999; Mm.390542; Mm.1999; Mm.390542 7 7 B3 UEVLD 55293 NM_021884 - 39627 46787957 22088 Tsg101 0 GAGTCCTAGGAGAAAGCCCCATA GTGCAGTAGCAGTCAAGATCCCT 5 18 5 1.1.2.1.5.18 BCBC-5B-0 14131847 P215744 3110003A22Rik Enhancer P215744 Enhancer Unique Tile chr4:6118430-6119412 (+) NM_026534 + 179 6118251 68053 3110003A22Rik 6430407D20Rik|AI451665 RIKEN cDNA 3110003A22 gene MGI:1915303 Mm.404043; Mm.41643; Mm.404043; Mm.41643; Mm.404043; Mm.41643; Mm.404043; Mm.41643; Mm.404043; Mm.41643; Mm.404043; Mm.41643; Mm.404043; Mm.41643; Mm.404043; Mm.41643; Mm.404043; Mm.41643 4 4 A1 LOC137886 137886 0 CTTTGTACCTCACCTGAGCCTGT CTGCTCTGACGTCCTGTCTGATA 5 18 6 1.1.2.1.6.18 BCBC-5B-0 14131866 P216584 Lrrc8c Enhancer P216584 Enhancer Unique Tile chr5:105760074-105760994 (+) NM_133897 + 302 105759772 100604 Lrrc8c AD158|AI326115|E430036I04Rik|fad158 leucine rich repeat containing 8 family, member C MGI:2140839 Mm.319847; Mm.392291; Mm.319847; Mm.392291; Mm.319847; Mm.392291; Mm.319847; Mm.392291; Mm.319847; Mm.392291; Mm.319847; Mm.392291; Mm.319847; Mm.392291; Mm.319847; Mm.392291; Mm.319847; Mm.392291; Mm.319847; Mm.392291; Mm.319847; Mm.392291; Mm.319847; Mm.392291; Mm.319847; Mm.392291; Mm.319847; Mm.392291; Mm.319847; Mm.392291 5 5 E5 LRRC8C 84230 1 CACATTGTGGTCGCCTACTCAG TAAGGCTCTATGAGCCAAACCTG 5 18 7 1.1.2.1.7.18 BCBC-5B-0 14131885 P217334 1810007P19Rik Enhancer P217334 Enhancer Unique Tile chr4:125557259-125558158 (+) NM_172701 + 2746 125560904 230751 1810007P19Rik 5730415O04|6030436A01Rik RIKEN cDNA 1810007P19 gene MGI:1916308 Mm.38907 4 4 D2.2 C1orf102 127700 NM_025544 + 7915 125549344 66407 Mrps15 0 CTATAGGACAAAGCCCACAAACG TCACAGACTGAAGCCCTAACTCC 5 18 8 1.1.2.1.8.18 BCBC-5B-0 14131904 P218374 Sult3a1 ProximalPromoter P218374 ProximalPromoter Unique Tile chr10:33546141-33547162 (+) NM_020565 + 26 33547136 57430 Sult3a1 Sult-x2|Sultx2 sulfotransferase family 3A, member 1 MGI:1931469 Mm.6590 10 10 B1 0 TAGACAGCCTTGCTAATCCCTGA GATAGTGCTTACACCAGCAGCCT 5 18 9 1.1.2.1.9.18 BCBC-5B-0 14131923 P219124 Alox8 ProximalPromoter P219124 ProximalPromoter Unique Tile chr11:69014101-69015002 (-) NM_009661 - 63 69014038 11688 Alox8 8-LOX|8S-LOX|Alox15b arachidonate 8-lipoxygenase MGI:1098228 Mm.289672 11 11 B4 ALOX15B 247 NM_008192 - 37838 69052840 14919 Gucy2e 0 CCAAATCTGTTGTTTCCCTCAAG AATGTGTTCGCTACCCACTGAAT 5 18 10 1.1.2.1.10.18 BCBC-5B-0 14131942 P219964 Oraov1 Enhancer P219964 Enhancer Unique Tile chr7:144724799-144725745 (+) NM_028184 + 216 144724583 72284 Oraov1 2210010N10Rik|TAOS1 oral cancer overexpressed 1 MGI:1919534 Mm.389995 7 7 F5 ORAOV1 220064 NM_008003 + 18859 144705940 14170 Fgf15 0 AGCTGCCACTTTTTCTTGTCCTT CCAGCAGTCTGGGTAGTAGGAAA 5 18 11 1.1.2.1.11.18 BCBC-5B-0 14131961 P221086 Sprr2h ProximalPromoter P221086 ProximalPromoter Unique Tile chr3:92470202-92471132 (+) NM_011474 + 45 92471087 20762 Sprr2h AI661967 small proline-rich protein 2H MGI:1330343 Mm.10693 3 3 F1|3 45.2 cM NM_011473 + 10885 92459317 20761 Sprr2g 0 CTTAGCCTCAGGTGCTAAACCAA CTCACCAGGTTCTCCTTAGTCCA 5 18 12 1.1.2.1.12.18 BCBC-5B-0 14131980 P221836 1810037C20Rik Enhancer P221836 Enhancer Unique Tile chrX:70643088-70644104 (-) NM_025473 - 1890 70645994 66294 1810037C20Rik Fam3A|MGC30343 RIKEN cDNA 1810037C20 gene MGI:1913544 Mm.166485 X X A6 FAM3A 60343 NM_145406 - 17074 70626014 214601 Slc10a3 0 CCTTCCCAGAGCATGAGTTCTAA AGAGAATGGAGATCCTAGTGGGG 5 18 13 1.1.2.1.13.18 BCBC-5B-0 14131999 P222958 Klk1b8 ProximalPromoter P222958 ProximalPromoter Duplication Tile chr7:43817663-43818751 (+) NM_008457 + 28 43818723 16624 Klk1b8 Klk8|MGC18615|Nrpn|TADG14|mGK-8 kallikrein 1-related peptidase b8 MGI:892018 Mm.425457 7 7 B3|7 23.21 cM NM_029831 + 4610 43813053 76999 1700127D06Rik 0 TCAAAGGTGTGCACCAAAATATG ACAGGATCAGGAACCTCATGGTA 5 18 14 1.1.2.1.14.18 BCBC-5B-0 14132018 P223798 Phox2a ProximalPromoter P223798 ProximalPromoter Unique Tile chr7:101693538-101694450 (+) NM_008887 + 2140 101692310 11859 Phox2a Arix|Phox2|Pmx2|Pmx2a paired-like homeobox 2a MGI:106633 Mm.389970 7 7 E2|7 50.0 cM PHOX2A 401 NM_010567 - 17293 101711743 16332 Inppl1 0 CCTTGAGAAAAGGGTCTGTGAGA ATGTCCCTAAGGCTGAATCATCA 5 18 15 1.1.2.1.15.18 BCBC-5B-0 14132037 P224548 Ly6c ProximalPromoter P224548 ProximalPromoter Unique Tile chr15:74876100-74877071 (-) NM_010741 - 15 74876085 17067 Ly6c AA682074|AA959465|Ly-6C lymphocyte antigen 6 complex, locus C MGI:96882 Mm.1583 15 15 D3|15 42.7 cM 0 TCTTGCTTGCTCTCTTCCTCCTA TTTAATTTCCTTCAGCTCCTCCC 5 18 16 1.1.2.1.16.18 BCBC-5B-0 14132056 P225670 ProximalPromoter P225670 ProximalPromoter Unique Tile chr7:28776447-28777243 (-) 0 CGAACAACTGGCAGAAAATTACC GATGTGTCCAGTTCCATGTCCTT 5 18 17 1.1.2.1.17.18 BCBC-5B-0 14132075 P226622 Clec2g Pdx1 P226622 Pdx1 Unique Tile chr6:128941421-128942333 (+) NM_027562 + 41412 128900009 70809 Clec2g 4632413B12Rik|MGC144756|Ocilrp1 C-type lectin domain family 2, member g MGI:1918059 Mm.254873 6 6 F3 0 GGCTGAAAAGGCTGAAAGAAGAT TGTCTCATGGAAGAGGAGAGCTT 5 18 18 1.1.2.1.18.18 BCBC-5B-0 14132094 P226886 Scnn1b Pdx1 P226886 Pdx1 Unique Tile chr7:121697590-121698510 (+) NM_011325 + 41332 121656258 20277 Scnn1b - sodium channel, nonvoltage-gated 1 beta MGI:104696 Mm.7709 7 7 F2|7 56.0 cM SCNN1B 6338 2 GTGGGTGGACCTGTTTGATCTTA GTGTAAAGGTGGGTCAGGGAAG 5 18 19 1.1.2.1.19.18 BCBC-5B-0 14132113 P002392 Stratagene PCR 5 P002392 Spike Control Negative Stratagene PCR 5 5 18 20 1.1.2.1.20.18 BCBC-5B-0 14131753 P211136 PufferfishHuman P211136 PufferfishHuman Unique Tile chr7:136840499-136841414 (-) 0 TAAAGGAAAGTTTGCTGCTTTGC ATGTGTGCCAGTGTGTTTTATGC 5 19 1 1.1.2.1.1.19 BCBC-5B-0 14131772 P211976 PufferfishHuman P211976 PufferfishHuman Unique Tile chr2:63620516-63621509 (-) 0 AGCTCTCTTTCTCTCCGTTGGTT AGGCAGTTAAAATTGAGTCTGCG 5 19 2 1.1.2.1.2.19 BCBC-5B-0 14131791 P212726 miRNA P212726 miRNA Unique Tile chr12:110037365-110038437 (-) mmu-mir-337 0 GAGTTCTTTGGGGTCAGAGTCAA CAGAGTTCAGGGTCAGATGAGGT 5 19 3 1.1.2.1.3.19 BCBC-5B-0 14131810 P213848 Gnmt Enhancer P213848 Enhancer Unique Tile chr17:46187424-46188368 (-) NM_010321 - 3976 46192344 14711 Gnmt - glycine N-methyltransferase MGI:1202304 Mm.29395 17 17 C|17 10.0 cM GNMT 27232 NM_145488 + 12771 46174653 224824 Pex6 0 GAAAGGAAGACTAAGGCCAGAGC AAAAAGGAGTGGGGAACTTTGAG 5 19 4 1.1.2.1.4.19 BCBC-5B-0 14131829 P214598 Atp5b Enhancer P214598 Enhancer Unique Tile chr10:127486415-127487465 (+) NM_016774 + 143 127486272 11947 Atp5b - ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit MGI:107801 Mm.238973 10 10 D3 ATP5B 506 NM_019766 + 24378 127462037 56351 Ptges3 0 CTGGAGGAGCTAGTTCGGTTCTT CAAGAAAAGGTTCCCATGTTCAC 5 19 5 1.1.2.1.5.19 BCBC-5B-0 14131848 P215438 5730403B10Rik Enhancer P215438 Enhancer Unique Tile chr16:4703790-4704863 (-) NM_025670 - 288 4705151 66626 5730403B10Rik 2700048O17Rik|AU018521|AW742692 RIKEN cDNA 5730403B10 gene MGI:1913876 Mm.157648; Mm.272866; Mm.157648; Mm.272866; Mm.157648; Mm.272866; Mm.157648; Mm.272866; Mm.157648; Mm.272866; Mm.157648; Mm.272866; Mm.157648; Mm.272866; Mm.157648; Mm.272866; Mm.157648; Mm.272866; Mm.157648; Mm.272866; Mm.157648; Mm.272866; Mm.157648; Mm.272866; Mm.157648; Mm.272866; Mm.157648; Mm.272866; Mm.157648; Mm.272866; Mm.157648; Mm.272866; Mm.157648; Mm.272866 16 16 A1|16 2.7 cM C16orf5 29965 NM_010443 + 46950 4656840 15369 Hmox2 0 TCTACTTTTCTGTAAGCGACGGC ATTCCCTCTTTCTTCTGGTCAGC 5 19 6 1.1.2.1.6.19 BCBC-5B-0 14131867 P216560 Sh3bp4 Enhancer P216560 Enhancer Unique Tile chr1:90939375-90940310 (+) NM_133816 + 919 90938456 98402 Sh3bp4 AI594717|AW227605|BOG25 SH3-domain binding protein 4 MGI:2138297 Mm.170983 1 1 D SH3BP4 23677 0 GCCAAGAAAGCTCCTTGGTATTT TATCACAATGACCTCTGAGCCAA 5 19 7 1.1.2.1.7.19 BCBC-5B-0 14131886 P217310 Pggt1b Enhancer P217310 Enhancer Unique Tile chr18:46409398-46410305 (-) NM_172627 - 3217 46406181 225467 Pggt1b 2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1 protein geranylgeranyltransferase type I, beta subunit MGI:1917514 Mm.262096; Mm.393044; Mm.262096; Mm.393044; Mm.262096; Mm.393044; Mm.262096; Mm.393044; Mm.262096; Mm.393044; Mm.262096; Mm.393044; Mm.262096; Mm.393044; Mm.262096; Mm.393044; Mm.262096; Mm.393044; Mm.262096; Mm.393044; Mm.262096; Mm.393044; Mm.262096; Mm.393044; Mm.262096; Mm.393044; Mm.262096; Mm.393044; Mm.262096; Mm.393044; Mm.262096; Mm.393044 18 18 C PGGT1B 5229 1 TTTTAGAAGCACGCTTTCCTGAC CAAGACATCTACCTGACCCATGA 5 19 8 1.1.2.1.8.19 BCBC-5B-0 14131905 P218350 Sh2d1a Enhancer P218350 Enhancer Unique Tile chrX:38745060-38746032 (+) NM_011364 + 1202 38747234 20400 Sh2d1a SAP SH2 domain protein 1A MGI:1328352 Mm.235391 X X A5 SH2D1A 4068 0 CAGACAGACAAGGGGGAGAGATA CGCACAGGTGTTGATAAATGTGT 5 19 9 1.1.2.1.9.19 BCBC-5B-0 14131924 P219190 Acyp2 Enhancer P219190 Enhancer Unique Tile chr11:30548199-30549233 (-) NM_029344 - 151 30549384 75572 Acyp2 2310004B09Rik acylphosphatase 2, muscle type MGI:1922822 Mm.390319 11 11 A4 ACYP2 98 0 TTTAGGGACGGTTCTTCTCACTG AAAAGGAAAAGGGAAAGGGAAAG 5 19 10 1.1.2.1.10.19 BCBC-5B-0 14131943 P219940 4833422F24Rik Enhancer P219940 Enhancer Unique Tile chr2:165092632-165093658 (-) NM_029021 - 1033 165091599 74614 4833422F24Rik - RIKEN cDNA 4833422F24 gene MGI:1921864 Mm.72179 2 2 H3 C20orf123 128506 NM_178411 - 13168 165079464 228876 Zfp334 0 CTGCTAACAGCTCCCATTCTGTT AAGGAGGGAAGACACACACAGAG 5 19 11 1.1.2.1.11.19 BCBC-5B-0 14131962 P221062 Vps33a Enhancer P221062 Enhancer Unique Tile chr5:123830108-123831062 (-) NM_029929 - 2562 123833624 77573 Vps33a 3830421M04Rik|AI503300|AW048546|AW554476|bf vacuolar protein sorting 33A (yeast) MGI:1924823 Mm.41372 5 5 F|5 64.0 cM VPS33A 65082 NM_023232 - 45326 123784782 66593 Diablo 0 TGGCTAAAACTTCCAACCTGTGT TCTCGATGAATAAAGGATCCCAA 5 19 12 1.1.2.1.12.19 BCBC-5B-0 14131981 P221812 2700094F01Rik ProximalPromoter P221812 ProximalPromoter Unique Tile chr6:30459658-30460565 (-) NM_178625 - 58 30459716 72649 2700094F01Rik AI428435 RIKEN cDNA 2700094F01 gene MGI:1919899 Mm.45418 6 6 A3.3 FLJ14803 84928 NM_029373 + 251 30459909 75647 1700025E21Rik 0 TTGCTGGGATTAAAGGCATGTAT ATGTCCAGGAAGCACAAGACAAC 5 19 13 1.1.2.1.13.19 BCBC-5B-0 14132000 P222652 Opn5 ProximalPromoter P222652 ProximalPromoter Unique Tile chr17:42074833-42075894 (-) NM_181753 - 36 42074797 353344 Opn5 Gpr136|Neuropsin|PGR12|TMEM13|opsin opsin 5 MGI:2662912 Mm.184937 17 17 B3 OPN5 221391 0 TCAGCTCCTCTGTAAGCATGTTG GCAGAGATCTCAACAGACGGAAT 5 19 14 1.1.2.1.14.19 BCBC-5B-0 14132019 P223774 Dab1 ProximalPromoter P223774 ProximalPromoter Unique Tile chr4:103864469-103865205 (+) NM_177259;NM_010014; + 286 103865491 13131 Dab1 AI956902|C630028C02Rik|scm|scr|scrambler|yot disabled homolog 1 (Drosophila) MGI:108554 Mm.289682 4 4 C6|4 52.7 cM DAB1 1600 2 GAGTGTGACCCCTCAAAAGAAGA ATCCCGGGAGTAGAGACCGAT 5 19 15 1.1.2.1.15.19 BCBC-5B-0 14132038 P224524 Eml3 Enhancer P224524 Enhancer Unique Tile chr19:8997500-8998529 (-) NM_144872 + 762 8996738 225898 Eml3 BC022146|MGC37888|MGC38588 echinoderm microtubule associated protein like 3 MGI:2387612 Mm.31008 19 19 A EML3 256364 NM_009073 - 1099 8996401 19881 Rom1 0 GCAATAGCAGGTTAGCTGAGGAA CACACCAGTATTGCTCCTGTGTC 5 19 16 1.1.2.1.16.19 BCBC-5B-0 14132057 P225646 2200002K05Rik ProximalPromoter P225646 ProximalPromoter Unique Tile chr9:14988535-14989489 (+) NM_026955 + 14 14989475 69137 2200002K05Rik - RIKEN cDNA 2200002K05 gene MGI:1916387 Mm.41396 9 9 A3 LOC387804 387804 NM_144933 - 40771 15030260 234959 Crsp6 0 CTGCTGTTTGCTCGGAATCTTAT GGCAGATGAGCAGGTTGTACTCT 5 19 17 1.1.2.1.17.19 BCBC-5B-0 14132076 P226688 Bri3 Pdx1 P226688 Pdx1 Unique Tile chr5:144537915-144538829 (+) NM_018772 + 29119 144508796 55950 Bri3 I3|I3 protein brain protein I3 MGI:1933174 Mm.38011; Mm.430717; Mm.38011; Mm.430717; Mm.38011; Mm.430717; Mm.38011; Mm.430717; Mm.38011; Mm.430717 5 5 G2 BRI3 25798 0 CCTTCCGTACAAGATAAAGCCAC AGCTCTCTCAAGGCTGAGTTGAA 5 19 18 1.1.2.1.18.19 BCBC-5B-0 14132095 P226862 Wwox Pdx1 P226862 Pdx1 Unique Tile chr8:117360811-117361730 (+) NM_019573 + 35139 117325672 80707 Wwox 5330426P09Rik|9030416C10Rik|WOX1 WW domain-containing oxidoreductase MGI:1931237 Mm.222224 8 - WWOX 51741 0 CCAATCTCTGAGTTCAAAGCCAT CAGAAGCAGAAGGAACCTCCATA 5 19 19 1.1.2.1.19.19 BCBC-5B-0 14132114 P002368 Stratagene PCR 3 P002368 Spike Control Negative Stratagene PCR 3 5 19 20 1.1.2.1.20.19 BCBC-5B-0 14132115 P211760 PufferfishHuman P211760 PufferfishHuman Unique Tile chr5:132043883-132044867 (-) 2 TCCTTTCTAGGGACCAAATGTGA GTAGTTTAGCCTGGCCTCAGACA 6 1 1 1.1.2.2.1.1 BCBC-5B-0 14132134 P212510 miRNA P212510 miRNA Unique Tile chr4:154893161-154894171 (+) mmu-mir-200a 0 TTAGAACTGGGCAGGAGTGTAGG AAATGTCAGCACCTTCTCAGAGC 6 1 2 1.1.2.2.2.1 BCBC-5B-0 14132153 P213632 Aplp2 Enhancer P213632 Enhancer Unique Tile chr9:30960257-30961202 (-) NM_009691 - 150 30961352 11804 Aplp2 AI790698 amyloid beta (A4) precursor-like protein 2 MGI:88047 Mm.19133 9 9 A2-B|9 13.0 cM APLP2 334 1 GCTGGCTACATAGAGGTGAGGAC CACCAGAAACACACAGTCCAGTC 6 1 3 1.1.2.2.3.1 BCBC-5B-0 14132172 P214472 Gyg Enhancer P214472 Enhancer Unique Tile chr3:20345993-20347046 (-) NM_013755 - 42 20347088 27357 Gyg AU017667|Gyg1 glycogenin MGI:1351614 Mm.6375 3 3 A2|3 12.5 cM GYG1 2992 0 ACACTATGACAGGTACGCCCC ACTCTCAGGTTTCCTCATTTCCC 6 1 4 1.1.2.2.4.1 BCBC-5B-0 14132191 P215222 Fkbp11 Enhancer P215222 Enhancer Unique Tile chr15:98554834-98555733 (-) NM_024169 - 432 98556165 66120 Fkbp11 1110002O23Rik FK506 binding protein 11 MGI:1913370 Mm.30729 15 15 F2 FKBP11 51303 NM_153518 + 18574 98536260 105833 Ccdc65 0 TCCACATACACTACACGGTGAGG GGCCCTTTACTCTACAACGTCCT 6 1 5 1.1.2.2.5.1 BCBC-5B-0 14132210 P216344 Pcdhgb1 Enhancer P216344 Enhancer Unique Tile chr18:37807746-37808676 (+) NM_033574 + 1465 37806281 93699 Pcdhgb1 MGC101993 protocadherin gamma subfamily B, 1 MGI:1935169 Mm.247203 18 18 B3 PCDHGB1 56104 NM_033587 + 2571 37811247 93712 Pcdhga4 0 GTTTTTCACCAGGCCTCCTACTT TAGAATGTGAAGCAACGCAGAGA 6 1 6 1.1.2.2.6.1 BCBC-5B-0 14132229 P217094 Actr2 Enhancer P217094 Enhancer Unique Tile chr11:20014224-20015194 (-) NM_146243 - 1308 20012916 66713 Actr2 4921510D23Rik|AA409782|Arp2|D6Ertd746e|MGC36604 ARP2 actin-related protein 2 homolog (yeast) MGI:1913963 Mm.259045 11 11 A3.1|11 31.5 cM ACTR2 10097 2 ACTGAGATGATGACCTGAGACCC AGGGTTTCTCTGTATAGCCCTGG 6 1 7 1.1.2.2.7.1 BCBC-5B-0 14132248 P217934 Wdtc1 Enhancer P217934 Enhancer Unique Tile chr4:132610191-132611094 (-) NM_199306 - 87 132611181 230796 Wdtc1 Gm695 WD and tetratricopeptide repeats 1 MGI:2685541 Mm.226576 4 4 D2.3 WDTC1 23038 NM_016981 + 30871 132641965 20544 Slc9a1 1 GGTCCTGGGAAGAGACCTGAC CAAACCATAAGTCGCCAAGAAAC 6 1 8 1.1.2.2.8.1 BCBC-5B-0 14132267 P218974 Clpx Enhancer P218974 Enhancer Unique Tile chr9:65095372-65096314 (+) NM_011802 + 3058 65092314 270166 Clpx AU014732|E330029I21 caseinolytic peptidase X (E.coli) MGI:1346017 Mm.30088 9 9 C|9 36.5 cM CLPX 10845 NM_173385 + 32171 65063201 214425 Cilp 2 GGGGTCAATAGGTAGGATTCAGG ATATGCTGGCATTCTCCACATTT 6 1 9 1.1.2.2.9.1 BCBC-5B-0 14132286 P219724 Gif Enhancer P219724 Enhancer Unique Tile chr19:11814835-11815879 (+) NM_008118 + 218 11814617 14603 Gif AV073125|MGC144768 gastric intrinsic factor MGI:1202394 Mm.456 19 19 A GIF 2694 NM_025606 + 21556 11837435 94063 Mrpl16 0 CAGTTGTGCTGATGAAAATGAGG ATAAGCAGCAGGTCTGGAATCAG 6 1 10 1.1.2.2.10.1 BCBC-5B-0 14132305 P220846 Olfr593 ProximalPromoter P220846 ProximalPromoter Unique Tile chr7:103084785-103085776 (+) NM_146380 + 94 103085682 258378 Olfr593 MOR24-2 olfactory receptor 593 MGI:3030427 Mm.377466 7 - NM_207143 + 7764 103093540 258246 Olfr594 0 CTCTTCTCCTCTGAGCAAGTTGG CAGGAATGCCAATGAGGATAAAG 6 1 11 1.1.2.2.11.1 BCBC-5B-0 14132324 P221686 Cpz ProximalPromoter P221686 ProximalPromoter Unique Tile chr5:35842576-35843508 (-) NM_153107 - 180 35842396 242939 Cpz AV136066 carboxypeptidase Z MGI:88487 Mm.108557 5 5 B3 CPZ 8532 NM_011121 + 27067 35870575 18817 Plk1 0 AACCTTTCACCCAAGGCTAAGTG GAAAGGCAGATAAAAGCCAACCT 6 1 12 1.1.2.2.12.1 BCBC-5B-0 14132343 P222436 Tmsb10 Enhancer P222436 Enhancer Unique Tile chr6:72886930-72887856 (-) NM_025284;NM_001039392; - 52 72887908 19240 Tmsb10 Ptmb10|TB10 thymosin, beta 10 Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824; Mm.3532; Mm.391824 6 6 C1 1 GAGAATCCACGGTAAGGCACAG GAAATTTGGCAGTCCGATTAGTG 6 1 13 1.1.2.2.13.1 BCBC-5B-0 14132362 P223558 Olfr672 ProximalPromoter P223558 ProximalPromoter Unique Tile chr7:104870715-104871759 (-) NM_020292;NM_146760; - 8 104870723 258755 Olfr672 MOR32-4|Ors46 olfactory receptor 672 MGI:3030506 Mm.377677 7 - NM_001011755 - 20911 104849804 257910 Olfr671 0 CCCCTGAAGCTGGAGTATTAGGT TGGTGACATGTTGTCAGGAGTCT 6 1 14 1.1.2.2.14.1 BCBC-5B-0 14132381 P224308 Ugt1a6b ProximalPromoter P224308 ProximalPromoter Unique Tile chr1:89933421-89934433 (+) NM_201410 + 14 89934447 394435 Ugt1a6b A9'|MGC36247|Ugt1a9 UDP glucuronosyltransferase 1 family, polypeptide A6B MGI:3580629 Mm.300095 1 1 D NM_201642 + 7173 89926248 394432 Ugt1a7c 0 TCTCCTGCCCTCTTCCTAATTTC GAATTCTGGGTTTCCTAACCACC 6 1 15 1.1.2.2.15.1 BCBC-5B-0 14132400 P225148 ProximalPromoter P225148 ProximalPromoter Unique Tile chr2:106381682-106382696 (-) 0 CCAGCTTTCTCCAGAATGAGAAG TTCTTACAGCTTTCCCTGCACTC 6 1 16 1.1.2.2.16.1 BCBC-5B-0 14132419 P225992 Pdx1 P225992 Pdx1 Unique Tile chr14:119541660-119542560 (+) 0 GAGAGGTTTACCTAAGTGTGCAA TTCTGTCTTTCTCAAACTGCAAG 6 1 17 1.1.2.2.17.1 BCBC-5B-0 14132438 P226358 Pdx1 P226358 Pdx1 Unique Tile chr17:9728658-9729563 (+) 0 ATTGCTGTTTTTCAAAGCTGGAG CCCTAGCTCTGCCATTCATACTG 6 1 18 1.1.2.2.18.1 BCBC-5B-0 14132457 P002344 Stratagene PCR 1 P002344 Spike Control Negative Stratagene PCR 1 6 1 19 1.1.2.2.19.1 BCBC-5B-0 14132476 P003412 Cy3 Anchor P003412 Anchor Control Positive Cy3 Anchor 6 1 20 1.1.2.2.20.1 BCBC-5B-0 14132116 P211736 PufferfishHuman P211736 PufferfishHuman Unique Tile chr5:106797921-106798843 (-) 2 GTCTAGATGAAAGTGGGTGGTGG AAGAAGGACAGGGATACCAGAGG 6 2 1 1.1.2.2.1.2 BCBC-5B-0 14132135 P212486 miRNA P212486 miRNA Unique Tile chr19:6259531-6260514 (+) mmu-mir-194-2 0 GGACGGTAGGGTTGCTTCTTACT TTGATGCAGTGTTTCCACATACC 6 2 2 1.1.2.2.2.2 BCBC-5B-0 14132154 P213326 Ppy Enhancer P213326 Enhancer Unique Tile chr11:101912478-101913416 (-) NM_008918 - 3969 101917385 19064 Ppy AV061413|IGSPP|MGC123521|PP pancreatic polypeptide MGI:97753 Mm.1269 11 11 D PPY 5539 NM_016695 - 7873 101904605 50997 Mpp2 2 AAACTTGAAAACCAACTGACCGA CTAGAGGCTAAGTGTGGGACGAA 6 2 3 1.1.2.2.3.2 BCBC-5B-0 14132173 P214448 Sfrs3 Enhancer P214448 Enhancer Unique Tile chr17:28766740-28767686 (+) NM_013663 + 6376 28760364 20383 Sfrs3 AL024116|X16 splicing factor, arginine/serine-rich 3 (SRp20) MGI:98285 Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787; Mm.394167; Mm.6787 17 17 A3.3|17 11.0 cM SFRS3 6428 NM_134115 - 31136 28735604 106504 Stk38 0 ACTGACCAATAAAAGGGGGCTTA TACCATTCAATTATGCACAGCCA 6 2 4 1.1.2.2.4.2 BCBC-5B-0 14132192 P215198 Crot Enhancer P215198 Enhancer Unique Tile chr5:9002024-9003051 (-) NM_023733 - 89 9003140 74114 Crot 1200003H03Rik carnitine O-octanoyltransferase MGI:1921364 Mm.28197 5 5 A1 CROT 54677 0 GAAGGGTATTGCAGTAGCAGGAA GAAACCCTGGTCTCTCCTTTTGT 6 2 5 1.1.2.2.5.2 BCBC-5B-0 14132211 P216320 Snrpn Enhancer P216320 Enhancer Unique Tile chr7:59882523-59883543 (-) NM_013670 - 502 59884045 20646 Snrpn 2410045I01Rik|HCERN3|MGC18604|MGC30325|Peg4|SMN small nuclear ribonucleoprotein N MGI:98347 Mm.274995 7 7 B5|7 29.0 cM SNRPN 6638 NM_033174 - 520 59884063 84704 Snurf 0 ACCTGTAGAGTCCGGGATTTTGT AAATCCTTAAGGTGAGGTCTGGC 6 2 6 1.1.2.2.6.2 BCBC-5B-0 14132230 P217160 Bcl2l13 Enhancer P217160 Enhancer Unique Tile chr6:120802141-120803063 (+) NM_153516 + 293 120801848 94044 Bcl2l13 BCL-RAMBO|E430016C20Rik|MGC38758|Mil-1|Mil1 BCL2-like 13 (apoptosis facilitator) MGI:2136959 Mm.27990 6 6 F1|6 54.0 cM BCL2L13 23786 NM_007510 - 13837 120788304 11973 Atp6v1e1 0 GGAACTTCTGAGGGGCTGTTT TCATCCAGGACACATTTATCCAA 6 2 7 1.1.2.2.7.2 BCBC-5B-0 14132249 P217910 Egfl7 Enhancer P217910 Enhancer Unique Tile chr2:26408484-26409429 (+) NM_178444;NM_198724;NM_198725; + 2596 26405888 353156 Egfl7 VE-statin|Zneu1 EGF-like domain 7 MGI:2449923 Mm.268933 2 2 B EGFL7 51162 NM_026212 - 16790 26426219 67512 Agpat2 1 TAATACTAGGGAAACTGCCGCTG AGTTCATTTCCTTTGGTGCTCAG 6 2 8 1.1.2.2.8.2 BCBC-5B-0 14132268 P218950 Cyp26a1 Enhancer P218950 Enhancer Unique Tile chr19:37758030-37758951 (+) NM_007811 + 4046 37762997 13082 Cyp26a1 Cyp26|MGC13860|P450RA|P450RAI|RAH cytochrome P450, family 26, subfamily a, polypeptide 1 MGI:1096359 Mm.42230 19 19 C2-C3 CYP26A1 1592 0 ATTTCCCTGTGCTTAACGATCAA AGTGTTGAGCCAGTAGATGCTCC 6 2 9 1.1.2.2.9.2 BCBC-5B-0 14132287 P219700 Sry ProximalPromoter P219700 ProximalPromoter Unique Tile chrY:1948546-1949475 (-) NM_011564 - 18 1948528 21674 Sry MGC129295|Tdf|Tdy sex determining region of Chr Y MGI:98660 Mm.377114 Y Y C3 SRY 6736 1 CTTACAGATGGTTTGCATGGTGA CACCAGTCCCAAAACTTGTCTCT 6 2 10 1.1.2.2.10.2 BCBC-5B-0 14132306 P220540 1110059G10Rik Enhancer P220540 Enhancer Unique Tile chr9:122798458-122799382 (-) NM_025419 - 274 122799656 66202 1110059G10Rik - RIKEN cDNA 1110059G10 gene MGI:1913452 Mm.268307 9 9 F4 KIAA1143 57456 NM_010620 + 396 122799778 209737 Kif15 0 CTCGGGTCCAGGAATTCTTACTT GTCAGAGATCTGCCTGCTTCTTC 6 2 11 1.1.2.2.11.2 BCBC-5B-0 14132325 P221662 Olfr1040 ProximalPromoter P221662 ProximalPromoter Unique Tile chr2:85947483-85948423 (-) NM_207561 - 88 85947571 404323 Olfr1040 MOR185-12 olfactory receptor 1040 MGI:3030874 Mm.377939 2 2 D NM_001011777 - 12784 85961207 257941 Olfr1042 1 TCTTCTGACAAACCAGAAGAGGG ACAGCAAAGAGGATGACCTCAAG 6 2 12 1.1.2.2.12.2 BCBC-5B-0 14132344 P222412 2610304G08Rik ProximalPromoter P222412 ProximalPromoter Unique Tile chr2:157719075-157720044 (+) NM_027434 + 122 157720166 70470 2610304G08Rik 2810446G03Rik|Crept RIKEN cDNA 2610304G08 gene MGI:1917720 Mm.290810 2 2 H2 C20orf77 58490 NM_029282 - 18274 157700801 75425 2610036D13Rik 0 GCTATGATCATGATGCACTCCAG ATCCTTGGTCCCTGACTTCTAGC 6 2 13 1.1.2.2.13.2 BCBC-5B-0 14132363 P223534 Il1rapl2 ProximalPromoter P223534 ProximalPromoter Unique Tile chrX:132916876-132917818 (+) NM_030688 + 94 132917912 60367 Il1rapl2 - interleukin 1 receptor accessory protein-like 2 MGI:1913106 Mm.328321 X X F1 IL1RAPL2 26280 1 AGCCTAGTCTGGCAAGGACACTA GTCTCCCACCAGGTTCACTACAC 6 2 14 1.1.2.2.14.2 BCBC-5B-0 14132382 P224374 Olfr1484 ProximalPromoter P224374 ProximalPromoter Unique Tile chr19:13651233-13652144 (+) NM_146291 + 180 13652324 258288 Olfr1484 MOR202-37 olfactory receptor 1484 MGI:3031318 Mm.371708 19 - NM_146636 + 34038 13686182 258629 Olfr1487 0 TACGGGTAAATCCCATGAAGAGA CCTGGTAATTGGTCAAATGGAAA 6 2 15 1.1.2.2.15.2 BCBC-5B-0 14132401 P225124 Trpc2 ProximalPromoter P225124 ProximalPromoter Unique Tile chr7:101946200-101947285 (-) NM_011644 + 2415 101949700 22064 Trpc2 TRPC2a|TRPC2b|Trrp2|mTrp2|smTRPC2|trp2 transient receptor potential cation channel, subfamily C, member 2 MGI:109527 Mm.292904 7 7 F1|7 50.0 cM TRPC2 7221 NM_029211 - 7247 101938953 75212 Rnf121 0 CCAAGGGTAAAGAGCACATTGTC GTATCCAGGGTTGGCCTCTAACT 6 2 16 1.1.2.2.16.2 BCBC-5B-0 14132420 P225968 C030045D06Rik Pdx1 P225968 Pdx1 Unique Tile chr1:11276936-11277835 (+) NM_001033636 + 27760 11249176 109294 C030045D06Rik AI316880|AI553603|D430013K02 RIKEN cDNA C030045D06 gene Mm.123247; Mm.426616; Mm.123247; Mm.426616; Mm.123247; Mm.426616; Mm.123247; Mm.426616; Mm.123247; Mm.426616; Mm.123247; Mm.426616; Mm.123247; Mm.426616; Mm.123247; Mm.426616; Mm.123247; Mm.426616; Mm.123247; Mm.426616 1 1 A2 0 ATTGGTTGATTGTCGGTAGCTGT TATATTGGAGCCTGCTTTTGCAT 6 2 17 1.1.2.2.17.2 BCBC-5B-0 14132439 P226334 Gm833 Pdx1 P226334 Pdx1 Unique Tile chr4:151518822-151519726 (+) NM_001033414 + 21613 151541339 330004 Gm833 - gene model 833, (NCBI) MGI:2685679 Mm.291863 4 4 E2 0 TCAGAGGCTTAGCGATGGAAATA GTGAACCATTCCAGTGTGAAACA 6 2 18 1.1.2.2.18.2 BCBC-5B-0 14132458 P226598 Rc3h1 Pdx1 P226598 Pdx1 Unique Tile chr1:162766754-162767666 (+) NM_001024952 + 23608 162743146 381305 Rc3h1 Gm551|mKIAA2025 RING CCCH (C3H) domains 1 MGI:2685397 Mm.329667 1 1 H2.1 RC3H1 149041 NM_080844 + 47656 162815322 11905 Serpinc1 0 TGTGTGTGCGTGTTAGTGAATTG TGGGTTCAAAGACTGGCATAAAC 6 2 19 1.1.2.2.19.2 BCBC-5B-0 14132477 P003364 Cy3 Anchor P003364 Anchor Control Positive Cy3 Anchor 6 2 20 1.1.2.2.20.2 BCBC-5B-0 14132117 P211712 PufferfishHuman P211712 PufferfishHuman Unique Tile chr2:73929830-73930729 (+) 0 TTCTCTGATAGAAGCTTGGGTGC TAAGAACCTGTTCCAGGGTTCAA 6 3 1 1.1.2.2.1.3 BCBC-5B-0 14132136 P212552 miRNA P212552 miRNA Unique Tile chr1:20667886-20668841 (-) mmu-mir-206 0 TGATCCAGGTCACTCTTTCCATT CTCCAAGGACTTCACAAGCTTCA 6 3 2 1.1.2.2.2.3 BCBC-5B-0 14132155 P213302 Prkaca Enhancer P213302 Enhancer Unique Tile chr8:86863488-86864409 (+) NM_008854 + 391 86863097 18747 Prkaca Cs|PKA|PKCD|Pkaca protein kinase, cAMP dependent, catalytic, alpha MGI:97592 Mm.19111 8 8 C3 PRKACA 5566 NM_024184 + 17690 86845798 66929 Asf1b 1 AGAGATACTTTGCCCCCAGTAGG CTCGGTATGCACAGAATCCATCT 6 3 3 1.1.2.2.3.3 BCBC-5B-0 14132174 P214424 Muc1 Enhancer P214424 Enhancer Unique Tile chr3:89310286-89311363 (+) NM_013605 + 3615 89314978 17829 Muc1 CD227|EMA|Muc-1 mucin 1, transmembrane MGI:97231 Mm.16193 3 3 F1|3 44.8 cM MUC1 4582 NM_013691 + 9127 89301159 21827 Thbs3 0 GGAGAGTGCAGAAGTTACCCTCA CTTTTCCCTTACCGAATGTAGCC 6 3 4 1.1.2.2.4.3 BCBC-5B-0 14132193 P215174 Ube2v2 Enhancer P215174 Enhancer Unique Tile chr16:15507131-15508073 (-) NM_023585 - 4 15508069 70620 Ube2v2 1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MGC102399|MMS2 ubiquitin-conjugating enzyme E2 variant 2 MGI:1917870 Mm.235407; Mm.390775; Mm.235407; Mm.390775; Mm.235407; Mm.390775; Mm.235407; Mm.390775; Mm.235407; Mm.390775; Mm.235407; Mm.390775; Mm.235407; Mm.390775; Mm.235407; Mm.390775; Mm.235407; Mm.390775; Mm.235407; Mm.390775; Mm.235407; Mm.390775; Mm.235407; Mm.390775; Mm.235407; Mm.390775; Mm.235407; Mm.390775; Mm.235407; Mm.390775; Mm.235407; Mm.390775; Mm.235407; Mm.390775 16 16 A1 UBE2V2 7336 NM_008565 - 42861 15550934 17217 Mcm4 2 GCGTCTGGTAGCAGGAGAAGAT CTTTGGTCTTGGACAGCTCTGAT 6 3 5 1.1.2.2.5.3 BCBC-5B-0 14132212 P216014 Enhancer P216014 Enhancer No Hits Tile 1 gtccggatgactaacagggac aagcatttactacagggccacaa 6 3 6 1.1.2.2.6.3 BCBC-5B-0 14132231 P217136 Slc35e4 Enhancer P217136 Enhancer Unique Tile chr11:3810632-3811682 (-) NM_153142 - 2019 3813701 103710 Slc35e4 A330108F03Rik|AI414849|AI536442|MGC28785 solute carrier family 35, member E4 MGI:2144150 Mm.171514 11 11 A1 SLC35E4 339665 NM_173745 + 15349 3795283 75219 Dusp18 0 CAAGGACTCCAAGTCTGGTCTGT GCTTAAGCTCCCTTTCTGGACTC 6 3 7 1.1.2.2.7.3 BCBC-5B-0 14132250 P217886 Lrrc4b Enhancer P217886 Enhancer Unique Tile chr7:44310574-44311587 (+) NM_198250 + 46 44310528 272381 Lrrc4b A830007M12|Lrig4 leucine rich repeat containing 4B MGI:3027390 Mm.44173 7 7 B3 LRRC4B 94030 NM_026690 + 21889 44333476 68352 0610012D14Rik 1 GTGAGTGTCCCTCAGAGTGTGTG TCACACACATAGAATCCCCTGAA 6 3 8 1.1.2.2.8.3 BCBC-5B-0 14132269 P218926 Sct Enhancer P218926 Enhancer Unique Tile chr7:141129219-141130126 (-) NM_011328 - 300 141130426 20287 Sct - secretin MGI:99466 Mm.4723 7 7 F5 SCT 6343 NM_028069 - 1125 141128094 72040 Mucdhl 0 CAGACTGGCTAGTATGGGACAGG CACTGGTCCTACAGCTGCCTACT 6 3 9 1.1.2.2.9.3 BCBC-5B-0 14132288 P219766 Nmur1 ProximalPromoter P219766 ProximalPromoter Unique Tile chr1:88219345-88220256 (-) NM_010341 - 33 88219312 14767 Nmur1 FM-3|Gpr66|NMU1R|NmU-R neuromedin U receptor 1 MGI:1341898 Mm.389159 1 1 D NMUR1 10316 NM_010880 - 28719 88190626 17975 Ncl 0 AGACTGGGAGTGATTCAGGTGAC CAGGAAAGATGGAACAATTGAGG 6 3 10 1.1.2.2.10.3 BCBC-5B-0 14132307 P220516 ProximalPromoter P220516 ProximalPromoter No Hits Tile 1 gacatcacattaaggcaaggagc ggggtgagtgagggtaggataaa 6 3 11 1.1.2.2.11.3 BCBC-5B-0 14132326 P221638 Zim1 ProximalPromoter P221638 ProximalPromoter Unique Tile chr7:6286864-6287807 (-) NM_011769 - 13654 6300518 22776 Zim1 - zinc finger, imprinted 1 MGI:1341879 Mm.89976 7 7 A1|7 6.5 cM NM_008817 - 46686 6334493 18616 Peg3 0 ATGCATAGCACACACCCCTACTT TCCTTGTACAGGTCCTTCTGAGC 6 3 12 1.1.2.2.12.3 BCBC-5B-0 14132345 P222388 ProximalPromoter P222388 ProximalPromoter No Hits Tile 0 acttgctagaacgctgggattac tcctttttgccctttgtagacac 6 3 13 1.1.2.2.13.3 BCBC-5B-0 14132364 P223228 Srr ProximalPromoter P223228 ProximalPromoter Unique Tile chr11:74761299-74762247 (+) NM_013761 - 19401 74741898 27364 Srr Srs serine racemase MGI:1351636 Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646; Mm.131443; Mm.220843; Mm.417646 11 11 B4 SRR 63826 NM_001002764 + 19233 74742066 103677 Smg6 0 TTTAGTGAGACCCTGCCTCAAAG GGCTCATATCAAATTCCTCATGC 6 3 14 1.1.2.2.14.3 BCBC-5B-0 14132383 P224350 Ltk ProximalPromoter P224350 ProximalPromoter Unique Tile chr2:119450063-119450978 (-) NM_206941;NM_203345;NM_206942;NM_008523; - 97 119449966 17005 Ltk - leukocyte tyrosine kinase MGI:96840 Mm.1740 2 2 E5|2 67.0 cM LTK 4058 NM_146125 + 16286 119433777 228550 Itpka 0 CTTTTCTTGGTTCACCATCTCCA CAGACTCTCCCAGACAGACGAGT 6 3 15 1.1.2.2.15.3 BCBC-5B-0 14132402 P225100 ProximalPromoter P225100 ProximalPromoter Unique Tile chr6:13723271-13724349 (-) 0 AGTGCACGCATCTTGGTAAAAAT GAAAAGGAACAAAAGGGCTCCTA 6 3 16 1.1.2.2.16.3 BCBC-5B-0 14132421 P225944 Hes6 Pdx1 P225944 Pdx1 Unique Tile chr1:93243562-93244409 (+) NM_019479 - 44 93243606 55927 Hes6 AI326893 hairy and enhancer of split 6 (Drosophila) MGI:1859852 Mm.280029 1 1 D HES6 55502 NM_023343 - 14373 93229189 67444 Ilkap 0 CCCTAGTGCAAACTACTCAGCGA GGAACTAGAGGGAAATGAGAGGC 6 3 17 1.1.2.2.17.3 BCBC-5B-0 14132440 P226400 Ptprf Pdx1 P226400 Pdx1 Unique Tile chr4:117771072-117771978 (+) NM_011213 - 3400 117775378 19268 Ptprf AA591035|LAR|LARS protein tyrosine phosphatase, receptor type, F MGI:102695 Mm.29855 4 4 C6-D1 PTPRF 5792 0 GTGGTTGAGTGCCTTTACTTGCT ATTTGCAGGCATTAAAGTTGAGC 6 3 18 1.1.2.2.18.3 BCBC-5B-0 14132459 P226574 Sipa1l1 Pdx1 P226574 Pdx1 Unique Tile chr12:83197800-83198711 (+) NM_172579 + 22368 83175432 217692 Sipa1l1 4931426N11Rik|AW213287|mKIAA0440 signal-induced proliferation-associated 1 like 1 MGI:2443679 Mm.261333 12 12 D1 SIPA1L1 26037 0 GCTGGTTGTGTTTAGCAAGCATT TGCTAAAAAGAAACTCACACCCC 6 3 19 1.1.2.2.19.3 BCBC-5B-0 14132478 P003208 Blank P003208 Buffer Control Negative Blank 6 3 20 1.1.2.2.20.3 BCBC-5B-0 14132118 P211406 PufferfishHuman P211406 PufferfishHuman Unique Tile chr4:84458343-84459340 (-) 0 AACTGACAAGAAAGCTACGCCAC AAAATGGGAAGGAGGGAATTAAC 6 4 1 1.1.2.2.1.4 BCBC-5B-0 14132137 P212528 miRNA P212528 miRNA Unique Tile chrX:64248564-64249573 (+) mmu-mir-201 0 TTGCCTTCCACTTGGTTAGTTGT CCAAGCCAAGATCCACATTTTAG 6 4 2 1.1.2.2.2.4 BCBC-5B-0 14132156 P213278 Pafah1b2 Enhancer P213278 Enhancer Unique Tile chr9:45734799-45735713 (-) NM_008775 - 101 45735814 18475 Pafah1b2 AI747451|AU021353|Pafahb|mus[b] platelet-activating factor acetylhydrolase, isoform 1b, alpha2 subunit MGI:108415 Mm.200859 9 9 A5.2 PAFAH1B2 5049 NM_027498 + 28159 45763872 70661 BC033915 1 GACCCTCTGCCTGTGTGAGTG GCCTCATCCAAGGGAAAGATAAG 6 4 3 1.1.2.2.3.4 BCBC-5B-0 14132175 P214400 Fgf9 Enhancer P214400 Enhancer Unique Tile chr14:57029888-57030792 (+) NM_013518 + 2845 57027043 14180 Fgf9 - fibroblast growth factor 9 MGI:104723 Mm.8846 14 14 D|14 21.0 cM FGF9 2254 1 CACCTCCCAGCTTTTCTTTCTTT TTTCAGGTAGAAAACGCACCTTC 6 4 4 1.1.2.2.4.4 BCBC-5B-0 14132194 P215240 0610011N22Rik Enhancer P215240 Enhancer Unique Tile chr13:74816410-74817410 (+) NM_024201 + 44 74816366 67433 0610011N22Rik 5430420E17Rik|A430066A18|AI256405|AW050060|C130002N06 RIKEN cDNA 0610011N22 gene MGI:1914683 Mm.101586; Mm.324679; Mm.401105; Mm.101586; Mm.324679; Mm.401105; Mm.101586; Mm.324679; Mm.401105; Mm.101586; Mm.324679; Mm.401105; Mm.101586; Mm.324679; Mm.401105; Mm.101586; Mm.324679; Mm.401105; Mm.101586; Mm.324679; Mm.401105; Mm.101586; Mm.324679; Mm.401105; Mm.101586; Mm.324679; Mm.401105; Mm.101586; Mm.324679; Mm.401105; Mm.101586; Mm.324679; Mm.401105; Mm.101586; Mm.324679; Mm.401105; Mm.101586; Mm.324679; Mm.401105; Mm.101586; Mm.324679; Mm.401105; Mm.101586; Mm.324679; Mm.401105; Mm.101586; Mm.324679; Mm.401105 13 13 C1 NM_023281 - 168 74816242 66945 Sdha 0 GGTAAGTGAGGTGCCAATGTCTT CCATCTCATACCAAAAGCCTTGA 6 4 5 1.1.2.2.5.4 BCBC-5B-0 14132213 P215990 Tmem38b Enhancer P215990 Enhancer Unique Tile chr4:53844049-53844961 (+) NM_028053 + 2200 53847161 52076 Tmem38b 1600017F22Rik|AA437809|D4Ertd89e transmembrane protein 38B MGI:1098718 Mm.27184 4 4 B2|4 28.5 cM TMEM38B 55151 NM_009317 + 43215 53800834 21350 Tal2 0 GTTCCCAGACATAACACCAAAGG CTTGTTCACGTCTCTCCCTGACT 6 4 6 1.1.2.2.6.4 BCBC-5B-0 14132232 P217112 Tor2a Enhancer P217112 Enhancer Unique Tile chr2:32576212-32577121 (+) NM_152800 + 2147 32579268 30933 Tor2a - torsin family 2, member A MGI:1353596 Mm.200695 2 2 B TOR2A 27433 NM_177384 - 20227 32597348 338348 Ttc16 1 CCACATGCACAAACACCAGTTAT AAACCTGGTTCCCCATATCATCT 6 4 7 1.1.2.2.7.4 BCBC-5B-0 14132251 P217862 Rcor1 Enhancer P217862 Enhancer Unique Tile chr12:111487850-111488775 (+) NM_198023 + 243 111487607 217864 Rcor1 5730409O11|6720480E22Rik|AU042633|D12Wsu95e|mKIAA0071 REST corepressor 1 MGI:106340 Mm.23808 12 12 F1|12 57.0 cM RCOR1 23186 1 GCTCGGGAGACAACTTTGTTTTT TATTTCTGAAACAAAACCCACGG 6 4 8 1.1.2.2.8.4 BCBC-5B-0 14132270 P218620 Aspscr1 ProximalPromoter P218620 ProximalPromoter Unique Tile chr11:120488161-120489129 (+) NM_198223;NM_026877; + 1 120489130 68938 Aspscr1 1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG alveolar soft part sarcoma chromosome region, candidate 1 (human) MGI:1916188 Mm.294020 11 11 E2 ASPSCR1 79058 NM_175263 + 12915 120475246 77583 5730593N15Rik 0 TCTAAGGTTGCATAGAACACGCA CCTCAAACAACTTTATCCGCAAC 6 4 9 1.1.2.2.9.4 BCBC-5B-0 14132289 P219742 Rhd Enhancer P219742 Enhancer Unique Tile chr4:134134081-134135061 (+) NM_011270 + 1598 134136659 19746 Rhd Rh|Rhced|Rhl1 Rh blood group, D antigen MGI:1202882 Mm.195461 4 4 D3|4 65.7 cM RHD 6007 NM_025382 - 8767 134125314 66146 Tmem57 0 AAACACAGTACATATGCCCACCC GGGAGATGGTTCTGTGTGTAAGG 6 4 10 1.1.2.2.10.4 BCBC-5B-0 14132308 P220492 Olfr520 ProximalPromoter P220492 ProximalPromoter Unique Tile chr7:99608316-99609283 (+) NM_147063 + 56 99609227 259066 Olfr520 MOR101-1 olfactory receptor 520 MGI:3030354 Mm.377818 7 - NM_175316 - 22893 99585423 101488 Slco2b1 0 GCCAGCGATTGTAGTTTCACTCT ACCAGGTAGAAGACGGTAGAGCC 6 4 11 1.1.2.2.11.4 BCBC-5B-0 14132327 P221614 Pgam2 Enhancer P221614 Enhancer Unique Tile chr11:5701081-5701986 (-) NM_018870 - 1718 5703704 56012 Pgam2 - phosphoglycerate mutase 2 MGI:1933118 Mm.219627 11 11 A1 PGAM2 5224 NM_013810 + 12549 5688532 13169 Dbnl 0 TCGTCTCTCTGTTGGGCTATTTC GAATGGACATGCTTAACTCCCAG 6 4 12 1.1.2.2.12.4 BCBC-5B-0 14132346 P222454 Olfr43 ProximalPromoter P222454 ProximalPromoter Unique Tile chr11:74023427-74024475 (-) NM_146711 - 18 74023409 258706 Olfr43 IA7|MGC129217|MGC129218|MOR125-1|MOR125-5_p|Olfr403 olfactory receptor 43 MGI:1333770 Mm.246537 11 11 B4 OR1A1 8383 NM_207622 + 11728 74011699 404316 Olfr403 0 GAACTCTGTCACATGACTGCACC ATCAGACATGAACCCAGAACCAT 6 4 13 1.1.2.2.13.4 BCBC-5B-0 14132365 P223204 Ggn ProximalPromoter P223204 ProximalPromoter Unique Tile chr7:28878104-28879126 (+) NM_182694;NM_182696; + 23 28879149 243897 Ggn AI593290|MGC102222 gametogenetin MGI:2181461 Mm.389886 7 7 B1 GGN 199720 NM_182927 - 697 28877407 101809 Spred3 0 AGAGGATTACAGATGCGATCCAG AAATAACCGAAAAGAACGGGTGT 6 4 14 1.1.2.2.14.4 BCBC-5B-0 14132384 P224326 B230325K18Rik ProximalPromoter P224326 ProximalPromoter Unique Tile chr7:127773217-127774314 (+) NM_176936 + 88 127774226 319527 B230325K18Rik - RIKEN cDNA B230325K18 gene MGI:2442200 Mm.32145 7 7 F3 NM_023258 - 10543 127784857 66824 Pycard 0 CCATGTTATTAATGTGGGGCAGT GGGGTTGGTGGTACACAACTTTA 6 4 15 1.1.2.2.15.4 BCBC-5B-0 14132403 P225076 Fbxw12 ProximalPromoter P225076 ProximalPromoter Unique Tile chr9:109092165-109093161 (-) NM_001008428 - 35 109092130 434440 Fbxw12 BC085247|MGC103250 F-box and WD-40 domain protein 12 MGI:3584372 Mm.296059 9 9 F2 FBXW12 285231 NM_177598 - 38784 109053381 211305 Fbxw13 0 GGGTCTTGATGAGCAGAGACAGT TTACTGGCTTGGCCAAAGATTTA 6 4 16 1.1.2.2.16.4 BCBC-5B-0 14132422 P001541 Blank P001541 Buffer Control Negative Blank 6 4 17 1.1.2.2.17.4 BCBC-5B-0 14132441 P226376 Agxt Pdx1 P226376 Pdx1 Unique Tile chr1:94958662-94959568 (+) NM_016702 + 6113 94965681 11611 Agxt Agxt1 alanine-glyoxylate aminotransferase MGI:1329033 Mm.7457 1 1 D|1 59.0 cM AGXT 189 NM_008440 - 26403 94932259 16560 Kif1a 0 TATCAGGGTTCACTCCTGGCTTA AAAAGGTGTGTGCATCCTGTTCT 6 4 18 1.1.2.2.18.4 BCBC-5B-0 14132460 P226550 E430002G05Rik Pdx1 P226550 Pdx1 Unique Tile chr2:102390769-102391679 (+) NM_173749 + 39881 102350888 210622 E430002G05Rik 5930437L24|Ramp RIKEN cDNA E430002G05 gene MGI:2445082 Mm.28649 2 2 E2 DKFZP586H2123 25891 0 AACCCTCAAGGAGAATGAAGTCC CCCTGTCTCTCAAGAGGAAAACA 6 4 19 1.1.2.2.19.4 BCBC-5B-0 14132479 P003208 Blank P003208 Buffer Control Negative Blank 6 4 20 1.1.2.2.20.4 BCBC-5B-0 14132119 P211382 A930021H16Rik PufferfishHuman P211382 PufferfishHuman Unique Tile chr5:139946481-139947425 (-) NM_174850 - 37883 139985308 231830 A930021H16Rik FLJ00139|JRAB|mFLJ00139 RIKEN cDNA A930021H16 gene MGI:2444818 Mm.240510 5 5 G2 1 TGTGGAAAACGTCAACTCAGCTA CACAGAATTGTCTGGCACCTATG 6 5 1 1.1.2.2.1.5 BCBC-5B-0 14132138 P212504 miRNA P212504 miRNA Unique Tile chr1:164049216-164050128 (+) mmu-mir-199a-2 0 CACATAGAGATTCCCCCTCACTG ATGCGTGTTTTGTTTAGCCTGTT 6 5 2 1.1.2.2.2.5 BCBC-5B-0 14132157 P213254 Nipsnap1 Enhancer P213254 Enhancer Unique Tile chr11:4774162-4775063 (+) NM_008698 + 155 4774007 18082 Nipsnap1 - 4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans) MGI:1278344 Mm.293716 11 11 A1 NIPSNAP1 8508 NM_172438 + 20282 4795345 107829 Thoc5 0 GGAATGAAAAACAGACTCTCGGA TCCTAATGTGCACAGCGATCTAA 6 5 3 1.1.2.2.3.5 BCBC-5B-0 14132176 P214094 Rab18 Enhancer P214094 Enhancer Unique Tile chr18:6760341-6761305 (+) NM_011225;NM_181070; + 3897 6765202 19330 Rab18 AA959686 RAB18, member RAS oncogene family MGI:102790 Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228; Mm.132802; Mm.426228 18 18 A1|18 7.5 cM RAB18 22931 0 ATCCTGATGCAGTAAAGACGAGC TTTTGTAACCCAGCAAGTCCAGT 6 5 4 1.1.2.2.4.5 BCBC-5B-0 14132195 P215216 Gcnt2 Enhancer P215216 Enhancer Unique Tile chr13:40867818-40868821 (+) NM_008105;NM_133219;NM_023887; + 1920 40870741 14538 Gcnt2 5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC glucosaminyl (N-acetyl) transferase 2, I-branching enzyme MGI:1100870 Mm.314757 13 13 A5|13 17.0 cM GCNT2 2651 1 GCACCAGCTATCACCTCTATGCT AAGCCATAGGTTCAATTCCCAAT 6 5 5 1.1.2.2.5.5 BCBC-5B-0 14132214 P215966 Cic Enhancer P215966 Enhancer Unique Tile chr7:24987650-24988604 (+) NM_027882 + 2965 24991569 71722 Cic 1200010B10Rik|mKIAA0306 capicua homolog (Drosophila) MGI:1918972 Mm.28833 7 7 A3 CIC 23152 NM_008776 - 18082 25006686 18476 Pafah1b3 1 GGACTCGGTCCTTTCTATTGGTT GACAGAACCCAAACACATCAACA 6 5 6 1.1.2.2.6.5 BCBC-5B-0 14132233 P217088 Rfwd3 Enhancer P217088 Enhancer Unique Tile chr8:114190695-114191716 (-) NM_146218 - 3805 114186890 234736 Rfwd3 BC027246|MGC27888 ring finger and WD repeat domain 3 MGI:2384584 Mm.334816 8 8 E1 RFWD3 55159 NM_029005 - 32860 114224576 74568 Mlkl 0 GGTACCAGAAACTCTGCTCCTCA AGGCACAATCAGGTCTTCACTTC 6 5 7 1.1.2.2.7.5 BCBC-5B-0 14132252 P217928 Asf1a Enhancer P217928 Enhancer Unique Tile chr10:53240155-53241063 (-) NM_025541 + 44312 53285375 66403 Asf1a 2310079C17Rik|C79052 ASF1 anti-silencing function 1 homolog A (S. cerevisiae) MGI:1913653 Mm.272989; Mm.278221; Mm.272989; Mm.278221; Mm.272989; Mm.278221; Mm.272989; Mm.278221; Mm.272989; Mm.278221; Mm.272989; Mm.278221; Mm.272989; Mm.278221; Mm.272989; Mm.278221; Mm.272989; Mm.278221; Mm.272989; Mm.278221; Mm.272989; Mm.278221 10 10 B3 ASF1A 25842 0 ATCTCTTTACGCCTGTCAGTTGC AGTGTCTCACACTTAAGGCAGGC 6 5 8 1.1.2.2.8.5 BCBC-5B-0 14132271 P218596 T2bp ProximalPromoter P218596 ProximalPromoter Unique Tile chr3:127800973-127801874 (-) NM_145133 + 19934 127781940 211550 T2bp TIFA Traf2 binding protein MGI:2182965 Mm.31852 3 3 G2 TIFA 92610 NM_145964 - 27640 127829514 211556 BC002199 0 TCCCCTATTCCCTATAGCCTCTG CCCATCTGGAAAAACAGACAAAC 6 5 9 1.1.2.2.9.5 BCBC-5B-0 14132290 P219718 LOC381438 ProximalPromoter P219718 ProximalPromoter Unique Tile chr3:37915895-37916858 (-) NM_198657 - 14 37915909 381438 LOC381438 - hypothetical gene supported by AK039231; AK039519; AK039710; AK045832 Mm.389421 3 3 B 0 AAGGTTGGCTTTGTAGACTTCCC ATGCATTTTGCAAACTCAGGTCT 6 5 10 1.1.2.2.10.5 BCBC-5B-0 14132309 P220468 Cyp2s1 Enhancer P220468 Enhancer Unique Tile chr7:25524080-25524991 (-) NM_028775 - 299 25525290 74134 Cyp2s1 1200011C15Rik|AU041727|C79779 cytochrome P450, family 2, subfamily s, polypeptide 1 MGI:1921384 Mm.275188 7 7 A3 CYP2S1 29785 NM_009465 - 26665 25497415 26362 Axl 1 ATAAAGGAGGCAGAAGCAGGAGT AGACTGGCCTCGAACTCACATAG 6 5 11 1.1.2.2.11.5 BCBC-5B-0 14132328 P221308 Slc22a5 Enhancer P221308 Enhancer Unique Tile chr11:53732046-53732955 (-) NM_011396 - 2128 53735083 20520 Slc22a5 Lstpl|Octn2|jvs solute carrier family 22 (organic cation transporter), member 5 MGI:1329012 Mm.42253 11 11 B1.3|11 28.0 cM SLC22A5 6584 0 TTTTACCCTGACCTTGAGAGTGC CTTTCTTTTGTCCAATCCCACTG 6 5 12 1.1.2.2.12.5 BCBC-5B-0 14132347 P222430 Bms1l ProximalPromoter P222430 ProximalPromoter Unique Tile chr6:118385043-118386124 (-) NM_194339 - 7 118385036 213895 Bms1l AA408648|AU020092|AU043373|BB007109|BC030906|KIAA0187|mKIAA0187 BMS1-like, ribosome assembly protein (yeast) MGI:2446132 Mm.25269 6 6 F1 BMS1L 9790 NM_028335 - 35001 118421125 72720 Zfp248 0 TTGCGATCTTACATTCCAATCCT CGGAAACTGTCCTTCTGCTTGTA 6 5 13 1.1.2.2.13.5 BCBC-5B-0 14132366 P223180 Kcnj15 Enhancer P223180 Enhancer Unique Tile chr16:95367179-95368134 (+) NM_001039057;NM_019664;NM_001039056; + 684 95366495 16516 Kcnj15 4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2 potassium inwardly-rectifying channel, subfamily J, member 15 MGI:1310000 Mm.272239 16 16 C4|16 69.1 cM KCNJ15 3772 0 AGCTGAAGTGTCTGTCACTGTGG GTGAGTGTGAGCCTGAGATTTGA 6 5 14 1.1.2.2.14.5 BCBC-5B-0 14132385 P224302 Olfr1289 ProximalPromoter P224302 ProximalPromoter Unique Tile chr2:111283257-111284298 (+) NM_146404 + 28 111284270 258399 Olfr1289 MOR245-6 olfactory receptor 1289 MGI:3031123 Mm.377482 2 - NM_146400 + 3659 111279598 258395 Olfr1288 0 TGTCATTGAGATACAGCCTGGAA GAAGTTCCCGAGAATTGGAGAGT 6 5 15 1.1.2.2.15.5 BCBC-5B-0 14132404 P225142 ProximalPromoter P225142 ProximalPromoter Unique Tile chr4:9855082-9855998 (-) 2 AGAGGGGACGAGGTAAGTATTCG TTCCACTCACCAGAGGTCTTAGG 6 5 16 1.1.2.2.16.5 BCBC-5B-0 14132423 P001517 Blank P001517 Buffer Control Negative Blank 6 5 17 1.1.2.2.17.5 BCBC-5B-0 14132442 P226352 Pdx1 P226352 Pdx1 Unique Tile chr12:35909855-35910760 (+) 0 GTAGCCTGCCAGAACATCTTGAC CCCCACTCTCTAGGTAACTTGCT 6 5 18 1.1.2.2.18.5 BCBC-5B-0 14132461 P226526 Pdx1 P226526 Pdx1 Unique Tile chr7:72490702-72491611 (+) 0 TTCTTGTCTCCAAGTTCCTGCAT TGGATATATGCCCAGGAGAGGTA 6 5 19 1.1.2.2.19.5 BCBC-5B-0 14132480 P003112 Blank P003112 Buffer Control Negative Blank 6 5 20 1.1.2.2.20.5 BCBC-5B-0 14132120 P211358 PufferfishHuman P211358 PufferfishHuman Unique Tile chr13:71768905-71769813 (-) 2 GAGTGATGTACTGTGCCCTACCC CTGAGCCCTGCCAAGTCTAAGTA 6 6 1 1.1.2.2.1.6 BCBC-5B-0 14132139 P212480 miRNA P212480 miRNA Unique Tile chr19:6266595-6267569 (-) mmu-mir-194-2 1 TTGAGACATTTCCCTGAACCATT GCCTCCTGAGTGCTGGTATTAAA 6 6 2 1.1.2.2.2.6 BCBC-5B-0 14132158 P213320 Ppgb Enhancer P213320 Enhancer Unique Tile chr2:164526112-164527016 (+) NM_008906;NM_001038492; + 1091 164525021 19025 Ppgb AU019505|PPCA protective protein for beta-galactosidase MGI:97748 Mm.359633 2 2 H3|2 96.0 cM PPGB 5476 NM_028028 + 10007 164516105 71971 Zswim1 0 GTGACCAATGACACAGAGGTGAG GCCTACACATAAACCAGAGTGGG 6 6 3 1.1.2.2.3.6 BCBC-5B-0 14132177 P214070 Ppp5c Enhancer P214070 Enhancer Unique Tile chr7:16185167-16186241 (-) NM_011155 - 151 16186392 19060 Ppp5c AU020526|PP5 protein phosphatase 5, catalytic subunit MGI:102666 Mm.3294; Mm.412407; Mm.3294; Mm.412407; Mm.3294; Mm.412407; Mm.3294; Mm.412407; Mm.3294; Mm.412407; Mm.3294; Mm.412407; Mm.3294; Mm.412407; Mm.3294; Mm.412407; Mm.3294; Mm.412407; Mm.3294; Mm.412407; Mm.3294; Mm.412407; Mm.3294; Mm.412407 7 7 A2|7 4.0 cM PPP5C 5536 NM_016868 - 28960 16215201 53417 Hif3a 0 AGACACAGGCCAACGACTACTTC GTCCCATCTACCCACTCAATGTC 6 6 4 1.1.2.2.4.6 BCBC-5B-0 14132196 P215192 Rdh14 Enhancer P215192 Enhancer Unique Tile chr12:10418504-10419496 (+) NM_023697 + 1705 10416799 105014 Rdh14 3110030G19Rik|AW215439|PAN2 retinol dehydrogenase 14 (all-trans and 9-cis) MGI:1920402 Mm.119343 12 12 A1.1 RDH14 57665 NM_027588 + 22453 10396051 70881 Nt5c1b 0 ACTCCTGTTGTGTTCTGGGACAT TCAAGAGGGAAGGACCCTAAGAG 6 6 5 1.1.2.2.5.6 BCBC-5B-0 14132215 P215942 Ints10 Enhancer P215942 Enhancer Unique Tile chr8:71723125-71724125 (+) NM_027590 + 170 71722955 70885 Ints10 4921521J11Rik|AI462004 integrator complex subunit 10 MGI:1918135 Mm.252421 8 8 C1 INTS10 55174 0 CTTCAACATCCAGGTGAGTCAGA ATTAACCATGCACCCAGAAAATG 6 6 6 1.1.2.2.6.6 BCBC-5B-0 14132234 P216782 Slc30a6 Enhancer P216782 Enhancer Unique Tile chr17:74295747-74296674 (+) NM_144798 + 3926 74300600 210148 Slc30a6 MGC11963|ZnT-6|ZnT6 solute carrier family 30 (zinc transporter), member 6 MGI:2386741 Mm.243943 17 17 E2 SLC30A6 55676 0 AATCTTTCCAAATCTGCTAGGGC TGTGTAGAACAAGCTGGCTTCAG 6 6 7 1.1.2.2.7.6 BCBC-5B-0 14132253 P217904 LOC381438 Enhancer P217904 Enhancer Unique Tile chr3:37914617-37915630 (-) NM_198657 - 279 37915909 381438 LOC381438 - hypothetical gene supported by AK039231; AK039519; AK039710; AK045832 Mm.389421 3 3 B 0 CCCGAAGTGCATACCTAAATCTG TTTTAAAACTCCTGCATCGCTTC 6 6 8 1.1.2.2.8.6 BCBC-5B-0 14132272 P218572 Slc25a28 ProximalPromoter P218572 ProximalPromoter Unique Tile chr19:43728268-43729181 (-) NM_145156 - 76 43728192 246696 Slc25a28 2210403D18Rik|Mrs3/4 solute carrier family 25, member 28 MGI:2180509 Mm.23827 19 19 C3|19 42.0 cM SLC25A28 81894 NM_053103 + 13954 43743135 93685 Entpd7 1 GACGTCCCTAGCATCGTTTTACA ACGGAGCCAAAATGTATCTGTGT 6 6 9 1.1.2.2.9.6 BCBC-5B-0 14132291 P219694 Paqr9 ProximalPromoter P219694 ProximalPromoter Unique Tile chr9:95368843-95369785 (+) NM_198414 + 617 95369168 75552 Paqr9 1700020G04Rik progestin and adipoQ receptor family member IX MGI:1922802 Mm.151485 9 9 E3.3 PAQR9 344838 NM_026476 - 47495 95321348 67958 2610101N10Rik 1 ATGGTAGGAGACGCAAGACAGG TGGAAGCGTAGTCCAGGTAGAAG 6 6 10 1.1.2.2.10.6 BCBC-5B-0 14132310 P220534 Olfr1256 ProximalPromoter P220534 ProximalPromoter Unique Tile chr2:89636737-89637693 (-) NM_146983 - 45 89636782 258985 Olfr1256 MOR231-1 olfactory receptor 1256 MGI:3031090 Mm.223374 2 - NM_010990 - 8117 89645810 18347 Olfr48 0 ATGGAAATGTAATTGTGGCCAAG AGAGGCCCAAGAGGACAAAGTAG 6 6 11 1.1.2.2.11.6 BCBC-5B-0 14132329 P221284 2310002B14Rik Enhancer P221284 Enhancer Unique Tile chr16:88534610-88535533 (-) NM_027105 - 1122 88536655 69533 2310002B14Rik AI507462 RIKEN cDNA 2310002B14 gene MGI:1916783 Mm.30967 16 16 C3.3 KRTAP26-1 388818 0 CAATATGGGGGAGCAAACTATGA GCTAGGAGAAAAGGCTCCAAGTC 6 6 12 1.1.2.2.12.6 BCBC-5B-0 14132348 P222406 Gpr35 Enhancer P222406 Enhancer Unique Tile chr1:94806337-94807354 (+) NM_022320 + 2172 94809526 64095 Gpr35 KPG_007 G protein-coupled receptor 35 MGI:1929509 Mm.152780 1 1 D GPR35 2859 NM_177587 + 29388 94836742 208760 Aqp12 0 GATGGATGGAGTAAGGGTTTTCC CTGTGGTCATGGTGTCTCTTCAC 6 6 13 1.1.2.2.13.6 BCBC-5B-0 14132367 P223156 ProximalPromoter P223156 ProximalPromoter No Hits Tile 0 ttgctttgtaatcccatgaaagg ctcatgtgaccgggaactaagac 6 6 14 1.1.2.2.14.6 BCBC-5B-0 14132386 P223996 Trpv3 ProximalPromoter P223996 ProximalPromoter Unique Tile chr11:73082792-73083758 (+) NM_145099 + 56 73083814 246788 Trpv3 1110036I10Rik|AI644701|MGC124324|MGC124325|VRL3 transient receptor potential cation channel, subfamily V, member 3 MGI:2181407 Mm.347652; Mm.75196; Mm.347652; Mm.75196; Mm.347652; Mm.75196; Mm.347652; Mm.75196; Mm.347652; Mm.75196 11 11 B4 TRPV3 162514 NM_001001445 + 28339 73054453 193034 Trpv1 0 GGTTGTAGTGATCAGGGATCTGG GCTCTCATCGTAGGCACAGAGAT 6 6 15 1.1.2.2.15.6 BCBC-5B-0 14132405 P225118 Cryba4 ProximalPromoter P225118 ProximalPromoter Unique Tile chr5:112492833-112493828 (-) NM_021351 - 28 112492805 12959 Cryba4 - crystallin, beta A4 MGI:102716 Mm.40324 5 5 F CRYBA4 1413 NM_023695 + 2295 112496123 12960 Crybb1 0 CACAACTGAGGCTTAGAGGCATT ACAAGGTCAGGGCTCTTATAGGC 6 6 16 1.1.2.2.16.6 BCBC-5B-0 14132424 P001493 Blank P001493 Buffer Control Negative Blank 6 6 17 1.1.2.2.17.6 BCBC-5B-0 14132443 P226328 Rapgef4 Pdx1 P226328 Pdx1 Unique Tile chr2:71796305-71797209 (+) NM_019688 + 14180 71782125 56508 Rapgef4 1300003D15Rik|5730402K07Rik|Epac2|KIAA4040|mKIAA4040 Rap guanine nucleotide exchange factor (GEF) 4 MGI:1917723 Mm.196153 2 2 C3 RAPGEF4 11069 0 ATTCATATCCCCAATCTCAGCCT GGAAATAAGGTGCATTCACAAGC 6 6 18 1.1.2.2.18.6 BCBC-5B-0 14132462 P226592 Marveld3 Pdx1 P226592 Pdx1 Unique Tile chr8:112805426-112806337 (+) NM_212447;NM_028584; - 44960 112851297 73608 Marveld3 1810006A16Rik|AI642133|MARVD3|Mrvldc3 MARVEL (membrane-associating) domain containing 3 MGI:1920858 Mm.86833 8 8 D3 MARVELD3 91862 0 GATTTCCTGCTGCCATTTATCAC ACACAGTGCCAGTTAGCACTCAA 6 6 19 1.1.2.2.19.6 BCBC-5B-0 14132481 P003112 Blank P003112 Buffer Control Negative Blank 6 6 20 1.1.2.2.20.6 BCBC-5B-0 14132121 P211334 Sox21 PufferfishHuman P211334 PufferfishHuman Unique Tile chr14:117113799-117114759 (-) NM_177753;NM_145464; - 4795 117119554 223227 Sox21 Sox25 SRY-box containing gene 21 MGI:2654070 Mm.70950 14 14 E4 SOX21 11166 0 CAGAGAGAGCACCATCCAAACTT GAGGCTCATTCTTTCACCAGTGT 6 7 1 1.1.2.2.1.7 BCBC-5B-0 14132140 P212174 miRNA P212174 miRNA Unique Tile chrX:147258065-147258987 (-) mmu-let-7f-2 0 AGACAAAACAATCCACAGCAACA TGAGCGTCTTTTTGGACACAGTA 6 7 2 1.1.2.2.2.7 BCBC-5B-0 14132159 P213296 Pik3r2 Enhancer P213296 Enhancer Unique Tile chr8:73709213-73710232 (-) NM_008841 - 3533 73705680 18709 Pik3r2 - phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta) MGI:1098772 Mm.12945 8 8 B3.3|8 33.5 cM PIK3R2 5296 NM_023065 - 13575 73695638 65972 Ifi30 0 ATCCACAGCTCAGGCAAAAAGTA TCATATCCACAGGCAGAGTTTCA 6 7 3 1.1.2.2.3.7 BCBC-5B-0 14132178 P214046 Pik3c2a Enhancer P214046 Enhancer Unique Tile chr7:116212375-116213308 (-) NM_011083 - 3174 116209201 18704 Pik3c2a Cpk-m phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide MGI:1203729 Mm.3810; Mm.393270; Mm.3810; Mm.393270; Mm.3810; Mm.393270; Mm.3810; Mm.393270; Mm.3810; Mm.393270; Mm.3810; Mm.393270; Mm.3810; Mm.393270; Mm.3810; Mm.393270; Mm.3810; Mm.393270; Mm.3810; Mm.393270; Mm.3810; Mm.393270; Mm.3810; Mm.393270; Mm.3810; Mm.393270 7 7 F1|7 53.0 cM PIK3C2A 5286 0 TTTATGCGACTAGAGCAGAGGCT TCCTTGCTCCTTCTGTGGTAGAC 6 7 4 1.1.2.2.4.7 BCBC-5B-0 14132197 P215168 Ddi2 Enhancer P215168 Enhancer Unique Tile chr4:140994038-140994940 (-) NM_001017966 - 555 140995495 68817 Ddi2 1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698 DNA-damage inducible protein 2 Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721; Mm.17880; Mm.392028; Mm.393721 4 4 E1 NM_023544 - 36201 140957837 69994 Rsc1a1 0 TCCTGACTTTCCGACCAGAAATA ACAGGAATGGGGTCCTAGGTTT 6 7 5 1.1.2.2.5.7 BCBC-5B-0 14132216 P216008 2810423E13Rik Enhancer P216008 Enhancer Unique Tile chr3:40941915-40942832 (-) NM_028140 - 502 40943334 72175 2810423E13Rik AI836898|MGC132949|MGC132950 RIKEN cDNA 2810423E13 gene MGI:1919425 Mm.130610 3 3 C MGC33302 256471 NM_011495;NM_173169; + 45293 40896622 20873 Plk4 0 AGCAGACACTGCATTCTGTTGAC AAAACACAGGCCAGACATGAAAT 6 7 6 1.1.2.2.6.7 BCBC-5B-0 14132235 P216758 Enhancer P216758 Enhancer No Hits Tile 0 tttccctgtgaatgtagggagtg gatcacctgtccaaagaatgacc 6 7 7 1.1.2.2.7.7 BCBC-5B-0 14132254 P217880 Tmem63b Enhancer P217880 Enhancer Unique Tile chr17:45148692-45149664 (-) NM_198167 - 55 45149719 224807 Tmem63b BC026370 transmembrane protein 63b MGI:2387609 Mm.157904 17 17 B3 TMEM63B 55362 NM_026732 + 288 45149952 68463 Mrpl14 0 CTTGGCTCATAGGATCTCACCAC CAGGGAGTGGTACTCGGTAGAGA 6 7 8 1.1.2.2.8.7 BCBC-5B-0 14132273 P218548 Dlgh4 Enhancer P218548 Enhancer Unique Tile chr11:69837220-69838212 (+) NM_007864 + 2162 69835058 13385 Dlgh4 PSD-95|PSD95|SAP90|SAP90A discs, large homolog 4 (Drosophila) MGI:1277959 Mm.27256 11 11 B4 DLG4 1742 NM_017366 - 5618 69831602 11370 Acadvl 1 AGTGCTCAGCCTTTGTAGTCACC ATCAAGACCCTCTTTCATCCCTC 6 7 9 1.1.2.2.9.7 BCBC-5B-0 14132292 P219388 Aloxe3 ProximalPromoter P219388 ProximalPromoter Unique Tile chr11:68941450-68942488 (+) NM_011786 + 83 68942571 23801 Aloxe3 MGC143829|MGC143830|e-LOX-3 arachidonate lipoxygenase 3 MGI:1345140 Mm.41989 11 11 B3|11 37.0 cM ALOXE3 59344 NM_033041 + 4803 68936647 84653 Hes7 0 CAAAGCTCTCCACTTTTGCCTAA GAGGAAGGATCCAGCTCTAGGAC 6 7 10 1.1.2.2.10.7 BCBC-5B-0 14132311 P220510 Prlpc3 Enhancer P220510 Enhancer Unique Tile chr13:27522268-27523317 (-) NM_023741 - 1590 27520678 74188 Prlpc3 1600032B14Rik|AV036230|PLP-Cgamma prolactin-like protein C 3 MGI:1921438 Mm.46090 13 13 A3.1 NM_023332 - 48720 27572037 67310 Prlpc2 1 TCTGACATCCCAGACTCTTAGCC AACCTGTAAGCCAGCACCAATTA 6 7 11 1.1.2.2.11.7 BCBC-5B-0 14132330 P221260 Noc3l Enhancer P221260 Enhancer Unique Tile chr19:38883130-38884099 (-) NM_021315 - 245 38884344 57753 Noc3l AF233884|Fad24 nucleolar complex associated 3 homolog (S. cerevisiae) MGI:1932610 Mm.86482 19 19 C3 NOC3L 64318 NM_145952 + 17623 38901722 209478 Tbc1d12 0 GATCTATGCTCCATCCACTTTGG CAGCATCTTTTACAGCTTGCCTT 6 7 12 1.1.2.2.12.7 BCBC-5B-0 14132349 P222382 B630019A10Rik ProximalPromoter P222382 ProximalPromoter Unique Tile chr16:23140809-23141754 (-) NM_177072 - 9 23140818 320099 B630019A10Rik MGC118427 RIKEN cDNA B630019A10 gene MGI:2443371 Mm.326729 16 16 B1 NM_145933 + 634 23140175 20440 St6gal1 0 GTTGAAGGCTGTCCAGTTGTCTT CGTCTGTATTGTGTAAGGCGTTG 6 7 13 1.1.2.2.13.7 BCBC-5B-0 14132368 P223222 Mcee ProximalPromoter P223222 ProximalPromoter Unique Tile chr7:64266496-64267516 (-) NM_028626 + 4204 64271720 73724 Mcee 1110007A04Rik methylmalonyl CoA epimerase MGI:1920974 Mm.10093 7 7 C MCEE 84693 NM_026483 - 3644 64271160 67973 Mphosph10 2 CTCCTGAGTGCTGGGATTAAAGA AATGTCACTCTTTTCAAGCTGCC 6 7 14 1.1.2.2.14.7 BCBC-5B-0 14132387 P223972 Man2b1 Enhancer P223972 Enhancer Unique Tile chr8:87974740-87975685 (-) NM_010764 + 1306 87973434 17159 Man2b1 AW107687|LAMAN mannosidase 2, alpha B1 MGI:107286 Mm.4219 8 8 C2|8 37.0 cM MAN2B1 4125 NM_001001493 + 3643 87971097 414077 BC056474 0 GCAGGTCCAAAAGAGAATAGGGT CCACAGTCCTGAGTGATGTTCAG 6 7 15 1.1.2.2.15.7 BCBC-5B-0 14132406 P225094 Astn2 ProximalPromoter P225094 ProximalPromoter Unique Tile chr4:65890824-65891872 (-) NM_019514;NM_207109; - 20 65890844 56079 Astn2 bM452J22.1 astrotactin 2 MGI:1889277 Mm.374806 4 - ASTN2 23245 2 AGGTTAGAAACTGGAATCAGCCC AGCTAAGGAGCCTAGAGAGCCAC 6 7 16 1.1.2.2.16.7 BCBC-5B-0 14132425 P001469 Blank P001469 Buffer Control Negative Blank 6 7 17 1.1.2.2.17.7 BCBC-5B-0 14132444 P225926 Lhfpl2 Pdx1 P225926 Pdx1 Unique Tile chr13:95274151-95274983 (+) NM_172589 + 161 95274822 218454 Lhfpl2 6030465B15|AI447312|AW050335|mKIAA0206 lipoma HMGIC fusion partner-like 2 MGI:2145236 Mm.316553 13 13 D1 LHFPL2 10184 1 TCATGACCTCCTTAAGGCTTTTT ACACATATTGATGTTCACGGTGG 6 7 18 1.1.2.2.18.7 BCBC-5B-0 14132463 P226568 Pdx1 P226568 Pdx1 Unique Tile chr1:77664022-77664933 (+) 2 TGCAACACATACACACACACACA GGGTCAAGGAGGAGAAGAAATGT 6 7 19 1.1.2.2.19.7 BCBC-5B-0 14132482 P003316 Blank P003316 Buffer Control Negative Blank 6 7 20 1.1.2.2.20.7 BCBC-5B-0 14132122 P211400 PufferfishHuman P211400 PufferfishHuman Unique Tile chr18:84376138-84377043 (-) 0 TACCCATGTTCTTGGCTTTGTTT TGACAAAATATTGGGGCGTCTAC 6 8 1 1.1.2.2.1.8 BCBC-5B-0 14132141 P212150 Maml1 ChickenHuman P212150 ChickenHuman Unique Tile chr11:50098769-50099691 (-) NM_175334 - 10600 50110291 103806 Maml1 AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200 mastermind like 1 (Drosophila) MGI:1890504 Mm.51116 11 11 B1.3 MAML1 9794 NM_008521 - 16875 50081894 17001 Ltc4s 0 GGTTCTCTACCAAAAACAGGGCT CTGGGTCCTAGTTGGCTCCTAAT 6 8 2 1.1.2.2.2.8 BCBC-5B-0 14132160 P213272 Nrl Enhancer P213272 Enhancer Unique Tile chr14:54480675-54481690 (-) NM_008736 - 1639 54479036 18185 Nrl AW492574|D14H14S46E neural retina leucine zipper gene MGI:102567 Mm.20422 14 14 C2|14 19.5 cM NRL 4901 NM_028994 + 12646 54494336 74551 Pck2 0 CTCGGTGGTAGAGTGCTTTCCTA AAAAGAAGCGGAAAATGTAAGGC 6 8 3 1.1.2.2.3.8 BCBC-5B-0 14132179 P214022 Nsmaf Enhancer P214022 Enhancer Unique Tile chr4:6379840-6380750 (-) NM_010945 - 658 6381408 18201 Nsmaf AA959567|C630007J05|Fan neutral sphingomyelinase (N-SMase) activation associated factor MGI:1341864 Mm.3059 4 - NSMAF 8439 0 CGGGCTACATTTTTGTTTGTTTG TGTTCTCTGAGATAGCGAAACCC 6 8 4 1.1.2.2.4.8 BCBC-5B-0 14132198 P214862 Copz2 Enhancer P214862 Enhancer Unique Tile chr11:96666219-96667143 (+) NM_019877 + 243 96665976 56358 Copz2 1110012D12Rik|zeta2-COP coatomer protein complex, subunit zeta 2 MGI:1929008 Mm.22144 11 11 D COPZ2 51226 NM_008686 - 22174 96644045 18023 Nfe2l1 0 AAGGGGAGAAAAAGTTTGTCCTG CAACTATCCACTGATCCCTTTGG 6 8 5 1.1.2.2.5.8 BCBC-5B-0 14132217 P215984 Tmem106b Enhancer P215984 Enhancer Unique Tile chr6:13020115-13021054 (+) NM_027992 + 260 13019855 71900 Tmem106b 2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344 transmembrane protein 106B MGI:1919150 Mm.27742; Mm.392714; Mm.27742; Mm.392714; Mm.27742; Mm.392714; Mm.27742; Mm.392714; Mm.27742; Mm.392714; Mm.27742; Mm.392714; Mm.27742; Mm.392714; Mm.27742; Mm.392714; Mm.27742; Mm.392714; Mm.27742; Mm.392714 6 6 A2 TMEM106B 54664 1 CTCTGGGGCTTGACAGTTGTAGT ACTAAGTGATTCAGGTCACCCCA 6 8 6 1.1.2.2.6.8 BCBC-5B-0 14132236 P216734 Vps54 Enhancer P216734 Enhancer Unique Tile chr11:21139463-21140366 (+) NM_139061 + 140 21139323 245944 Vps54 5330404P15Rik|Hcc8|Vps54l|mSLP8|wr vacuolar protein sorting 54 (yeast) MGI:2178798 Mm.170103 11 11 12.1 cM VPS54 51542 0 GGCTTGGAGCTGACAGAGTTTC CCCACTTCTAGGAAACCCAACTC 6 8 7 1.1.2.2.7.8 BCBC-5B-0 14132255 P217856 1300003B13Rik Enhancer P217856 Enhancer Unique Tile chr17:22131003-22132064 (+) NM_198003 + 2037 22128966 74149 1300003B13Rik - RIKEN cDNA 1300003B13 gene MGI:1921399 Mm.30767 17 17 A3.3 0 CGTGATTCCCAGAAGACAAAATC CACTTCTTTTCCTTTCCCCAACT 6 8 8 1.1.2.2.8.8 BCBC-5B-0 14132274 P218614 Sult5a1 Enhancer P218614 Enhancer Unique Tile chr8:126042115-126043143 (-) NM_020564 - 1202 126044345 57429 Sult5a1 Sult-x1|Sultx1 sulfotransferase family 5A, member 1 MGI:1931463 Mm.6562 8 8 E1 NM_013614 - 10197 126053340 18263 Odc1 0 AATCTGGCTTTATTCTTAGGCGG TCTGGGGTCACCTTCAGAGATAG 6 8 9 1.1.2.2.9.8 BCBC-5B-0 14132293 P219364 Olfr910 ProximalPromoter P219364 ProximalPromoter Unique Tile chr9:38288507-38289552 (+) NM_146811 + 85 38289467 258807 Olfr910 MOR165-3 olfactory receptor 910 MGI:3030744 Mm.223234 9 - NM_146873 + 14203 38274304 258873 Olfr909 0 TTTCTCTGGTGTCTCCTCCAGTC AAAAGAGGGGTATTTGGAGGTCA 6 8 10 1.1.2.2.10.8 BCBC-5B-0 14132312 P220486 Fiz1 ProximalPromoter P220486 ProximalPromoter Unique Tile chr7:4617703-4618658 (+) NM_011813 - 28 4617731 23877 Fiz1 AI790204|FLJ00416|MGC117900|mFLJ00416 Flt3 interacting zinc finger protein 1 MGI:1344336 Mm.38911 7 7 A1 FLJ14768 84922 NM_025324 + 64 4618594 66056 Zfp524 1 ATTACTTACACCTCCCTCTGGGC CCTCTGGGTACCTCATTTGCAT 6 8 11 1.1.2.2.11.8 BCBC-5B-0 14132331 P221236 Olfr600 ProximalPromoter P221236 ProximalPromoter Unique Tile chr7:103220692-103221627 (-) NM_147046 - 55 103220747 259048 Olfr600 MOR39-1 olfactory receptor 600 MGI:3030434 Mm.377806 7 - NM_146731 + 8816 103211876 258726 Olfr599 0 ACCTAAGCCTTAAATGCACAATG ATTCCAGCCAGGATGAATATCAA 6 8 12 1.1.2.2.12.8 BCBC-5B-0 14132350 P222076 Slc1a2 ProximalPromoter P222076 ProximalPromoter Unique Tile chr2:102458653-102459561 (+) NM_011393 + 47715 102507276 20511 Slc1a2 1700091C19Rik|Eaat2|GLT-1|GLT1|MGLT1 solute carrier family 1 (glial high affinity glutamate transporter), member 2 MGI:101931 Mm.371582 2 2 E2|2 54.0 cM SLC1A2 6506 0 TGTGTCCCAGTCCTCGAGATAAT CGATCCCTCTCTATTTTTGTCCA 6 8 13 1.1.2.2.13.8 BCBC-5B-0 14132369 P223198 Zfp352 ProximalPromoter P223198 ProximalPromoter Unique Tile chr4:89709791-89710873 (+) NM_153102 + 36 89710837 236537 Zfp352 2czf48 zinc finger protein 352 MGI:2387418 Mm.214642 4 4 C5 0 ACTTGACCTTTTTCCCCTACTGC ATGTGTGAACCAGCTGAAGACAA 6 8 14 1.1.2.2.14.8 BCBC-5B-0 14132388 P223948 Olfr825 ProximalPromoter P223948 ProximalPromoter Unique Tile chr10:129566245-129567298 (-) NM_146677 - 28 129566273 258672 Olfr825 MOR210-1 olfactory receptor 825 MGI:3030659 Mm.377632 10 - OR9K2 441639 NM_146676 - 16529 129583827 258671 Olfr826 0 CATGAAGTGAGAAGGTATTGGGC GAATGATTGCTTGTTTCCCTGTC 6 8 15 1.1.2.2.15.8 BCBC-5B-0 14132407 P225070 Wdr34 ProximalPromoter P225070 ProximalPromoter Unique Tile chr2:29870950-29871864 (-) NM_001008498 - 118 29870832 71820 Wdr34 3200002I06Rik|MGC103259 WD repeat domain 34 MGI:1919070 Mm.88053 2 2 B WDR34 89891 NM_023871 + 12187 29884051 56086 Set 0 TGGTAGAACATAGGAGCTGGCAT AGTCCGACGAGAGGAAGTGAAG 6 8 16 1.1.2.2.16.8 BCBC-5B-0 14132426 P001535 Blank P001535 Buffer Control Negative Blank 6 8 17 1.1.2.2.17.8 BCBC-5B-0 14132445 P225902 Mlstd2 Pdx1 P225902 Pdx1 Unique Tile chr7:113346011-113346822 (+) NM_026143;NM_027379; + 40945 113305066 67420 Mlstd2 2600011M19Rik|3732409C05Rik|FAR1 male sterility domain containing 2 MGI:1914670 Mm.206919 7 7 F2 MLSTD2 84188 0 TGAAACCCTACAAAGTTCTCCTG AATAATATAAGCCAGGTGGCCGT 6 8 18 1.1.2.2.18.8 BCBC-5B-0 14132464 P226544 Pdx1 P226544 Pdx1 Unique Tile chr16:28439881-28440791 (+) 0 ACCATCACCCAAAAGGAGATGTA GCTTGCTCATATGTAGCTGAGGT 6 8 19 1.1.2.2.19.8 BCBC-5B-0 14132483 P003316 Blank P003316 Buffer Control Negative Blank 6 8 20 1.1.2.2.20.8 BCBC-5B-0 14132123 P211376 PufferfishHuman P211376 PufferfishHuman Unique Tile chr13:40295977-40297056 (+) 2 CATCTTGTAACACATTTCTGCCA CTGTTCTTTGTCGTCACGTCATC 6 9 1 1.1.2.2.1.9 BCBC-5B-0 14132142 P212126 krt86 ChickenHuman P212126 ChickenHuman Unique Tile chr15:101304955-101305855 (+) NM_010667 + 3444 101301511 16679 krt86 AI325212|Khb4|Krt2-10|Krt2-11|MHb4 keratin 86 MGI:109362 Mm.347934; Mm.383183; Mm.347934; Mm.383183; Mm.347934; Mm.383183; Mm.347934; Mm.383183; Mm.347934; Mm.383183; Mm.347934; Mm.383183 15 15 F2|15 58.71 cM KRT86 3892 NM_016879 - 13482 101319337 53622 Krt85 0 AGCTGAACAGAATGATCCAGAGG CAGGGACAGCTTAGACCAAAAGA 6 9 2 1.1.2.2.2.9 BCBC-5B-0 14132161 P213248 Neo1 Enhancer P213248 Enhancer Unique Tile chr9:58833009-58834022 (-) NM_008684 - 423 58834445 18007 Neo1 2610028H22Rik|AI327052|D930014N22Rik neogenin MGI:1097159 Mm.42249 9 9 B NEO1 4756 0 GTTGTTTAGGATCCAGAGGGGAA TGTCTGATCAGGTGACCTTCGTA 6 9 3 1.1.2.2.3.9 BCBC-5B-0 14132180 P214088 Ptprc Enhancer P214088 Enhancer Unique Tile chr1:139990473-139991539 (-) NM_011210 - 138 139991677 19264 Ptprc B220|CD45R|Cd45|Ly-5|Lyt-4|T200|loc protein tyrosine phosphatase, receptor type, C MGI:97810 Mm.391573 1 1 E4|1 74.0 cM PTPRC 5788 0 AGGGAGACCCTATTTCTTAGGGG AAACGAGAGGAGTGAACATCAGG 6 9 4 1.1.2.2.4.9 BCBC-5B-0 14132199 P214838 Syncrip Enhancer P214838 Enhancer Unique Tile chr9:88278872-88279857 (-) NM_019796;NM_019666; - 136 88279993 56403 Syncrip 2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|pp68 synaptotagmin binding, cytoplasmic RNA interacting protein MGI:1891690 Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874; Mm.260545; Mm.32874 9 9 E3.2 SYNCRIP 10492 NM_172926 - 42043 88236829 244962 Snx14 1 TTCTGGAAAATGGATTCCAAGG CCCTGACTTCACCTGCTAACACT 6 9 5 1.1.2.2.5.9 BCBC-5B-0 14132218 P215960 Brms1l Enhancer P215960 Enhancer Unique Tile chr12:56754680-56755681 (+) NM_001037756 + 148 56754532 52592 Brms1l 0710008O11Rik|AI159718|BRMS1|D12Ertd407e breast cancer metastasis-suppressor 1-like MGI:1196337 Mm.24761 12 12 C1|12 23.0 cM BRMS1L 84312 NM_019994;NM_001003719; - 15383 56739297 56784 Garnl1 1 ATGAGATGGAGGTGGACTACGC GATGGCTGACTTATCGGCATTAC 6 9 6 1.1.2.2.6.9 BCBC-5B-0 14132237 P216710 Casc3 Enhancer P216710 Enhancer Unique Tile chr11:98616385-98617336 (+) NM_138660 + 3658 98620994 192160 Casc3 Btz|Mln51 cancer susceptibility candidate 3 MGI:2179723 Mm.40120 11 11 D CASC3 22794 NM_028722 + 4479 98611906 74026 4121402D02Rik 0 GAAATGTATTTGTGTCGTTGGCA CCATTACCCAAGAGTACCCACAA 6 9 7 1.1.2.2.7.9 BCBC-5B-0 14132256 P217550 2600001B17Rik Enhancer P217550 Enhancer Unique Tile chr11:102000729-102001705 (+) NM_172947 - 359 102001346 268490 2600001B17Rik 1110032E16Rik|1110059P07 RIKEN cDNA 2600001B17 gene MGI:1919592 Mm.259079 11 11 D NM_175935 + 4083 102005788 68401 G6pc3 1 TCTCATCAGCAGACAGTCCACTC CTTGTGAGCTTCTGGTTCTTCGT 6 9 8 1.1.2.2.8.9 BCBC-5B-0 14132275 P218590 1200009O22Rik ProximalPromoter P218590 ProximalPromoter Unique Tile chr6:53750387-53751381 (-) NM_025817 - 115 53750272 66873 1200009O22Rik AI316813|mKIAA0644 RIKEN cDNA 1200009O22 gene MGI:1914123 Mm.404560; Mm.411798; Mm.41187; Mm.422727; Mm.404560; Mm.411798; Mm.41187; Mm.422727; Mm.404560; Mm.411798; Mm.41187; Mm.422727; Mm.404560; Mm.411798; Mm.41187; Mm.422727; Mm.404560; Mm.411798; Mm.41187; Mm.422727; Mm.404560; Mm.411798; Mm.41187; Mm.422727; Mm.404560; Mm.411798; Mm.41187; Mm.422727; Mm.404560; Mm.411798; Mm.41187; Mm.422727; Mm.404560; Mm.411798; Mm.41187; Mm.422727; Mm.404560; Mm.411798; Mm.41187; Mm.422727; Mm.404560; Mm.411798; Mm.41187; Mm.422727 6 6 B3 KIAA0644 9865 1 ATTTTCCACACTGCTAGCACACA AAATTCGTTCTTCCCACACTCTG 6 9 9 1.1.2.2.9.9 BCBC-5B-0 14132294 P219340 Olfr750 ProximalPromoter P219340 ProximalPromoter Unique Tile chr14:49993517-49994429 (-) NM_207558 - 175 49993342 404319 Olfr750 MOR103-18 olfactory receptor 750 MGI:3030584 Mm.377276 14 14 C1 OR6S1 341799 NM_001011875 - 14346 49979171 497106 Rnase12 0 GGACCGTTGTCCTAAAATGTCAC TCTGAACATCAGAGTTGGGTGAA 6 9 10 1.1.2.2.10.9 BCBC-5B-0 14132313 P220462 Lipg Enhancer P220462 Enhancer Unique Tile chr18:75081491-75082432 (-) NM_010720 - 4039 75086471 16891 Lipg 3110013K01Rik|EL|mEDL lipase, endothelial MGI:1341803 Mm.299647 18 18 E2 LIPG 9388 NM_001002239 + 43420 75125852 319195 Rpl17 0 TCGGACAGCTGTGAAGAATGTAA GAAGCAGTTGTAAACCGATCCAC 6 9 11 1.1.2.2.11.9 BCBC-5B-0 14132332 P221302 Olfr1056 ProximalPromoter P221302 ProximalPromoter Unique Tile chr2:86157183-86158094 (-) NM_147018 - 36 86157219 259020 Olfr1056 MOR186-2 olfactory receptor 1056 MGI:3030890 Mm.377792 2 2 D NM_147021 - 8580 86148603 259023 Olfr1055 0 TCTTTCTTTGGTACCGCATTTGT TGAACTCATTCAGCACAGAGAGG 6 9 12 1.1.2.2.12.9 BCBC-5B-0 14132351 P222052 Slc16a2 Enhancer P222052 Enhancer Unique Tile chrX:100021797-100022706 (-) NM_009197 - 1837 100024543 20502 Slc16a2 AW105741|Mct8|Xpct solute carrier family 16 (monocarboxylic acid transporters), member 2 MGI:1203732 Mm.388973 X X D|X 41.9 cM SLC16A2 6567 0 AAAATCTCGAGTGTACTCAGCGG CCTGCCCGATAGTCAATAAACAG 6 9 13 1.1.2.2.13.9 BCBC-5B-0 14132370 P223174 Tep1 Enhancer P223174 Enhancer End Repeat Tile chr14:49796454-49797393 (-) NM_009351 - 3947 49792507 21745 Tep1 MGC91078|Tp1 telomerase associated protein 1 MGI:109573 Mm.318736 14 14 C2-D1|14 13.5 cM TEP1 7011 NM_133676 - 49373 49846766 66246 Osgep 1 CCAGGAGTGTTTTCTCTGGCTTA GTGTGTGTGTGTGTGTGTGTGTG 6 9 14 1.1.2.2.14.9 BCBC-5B-0 14132389 P223924 Matn3 Enhancer P223924 Enhancer Unique Tile chr12:8975260-8976285 (+) NM_010770 + 1257 8974003 17182 Matn3 AV009181 matrilin 3 MGI:1328350 Mm.42226 12 12 A1.1|12 2.0 cM MATN3 4148 NM_172470 + 23614 8999899 74682 Wdr35 0 TAGCAAACCATGTTTTAGGCGTT AAAGCCTTTCCAGTACACAGCAG 6 9 15 1.1.2.2.15.9 BCBC-5B-0 14132408 P224764 Slc39a12 ProximalPromoter P224764 ProximalPromoter Unique Tile chr2:14305071-14306156 (+) NM_001012305 + 1 14306157 277468 Slc39a12 AW046938|Gm731|MGC102235 solute carrier family 39 (zinc transporter), member 12 MGI:2139274 Mm.44662 2 2 A2 SLC39A12 221074 0 CGAGGTTTTCCAGTTTTGTTGAG TAACTGTGTGCTGAGAGCTGGAG 6 9 16 1.1.2.2.16.9 BCBC-5B-0 14132427 P001511 Blank P001511 Buffer Control Negative Blank 6 9 17 1.1.2.2.17.9 BCBC-5B-0 14132446 P225878 Pdx1 P225878 Pdx1 Unique Tile chr14:92034216-92035018 (+) 0 TCCACAGTGCTCTGGTGATTTAT TGTTTTTGTTTGCTGGTTGGTAG 6 9 18 1.1.2.2.18.9 BCBC-5B-0 14132465 P226520 Pdx1 P226520 Pdx1 Unique Tile chr5:86317564-86318473 (+) 0 ACCACTATTCTCCCCCTCTTCAC GGGACTTTTGGGATAGCATTGTA 6 9 19 1.1.2.2.19.9 BCBC-5B-0 14132484 P003268 Blank P003268 Buffer Control Negative Blank 6 9 20 1.1.2.2.20.9 BCBC-5B-0 14132124 P211352 PufferfishHuman P211352 PufferfishHuman Unique Tile chr13:72250677-72251715 (-) 2 GTAATCTTCCTGAGAGCAAGCCA GGAGGATCCTTCTGTTTCCAAGT 6 10 1 1.1.2.2.1.10 BCBC-5B-0 14132143 P212102 Insm1 ChickenHuman P212102 ChickenHuman Unique Tile chr2:145891453-145892507 (+) NM_016889 + 21044 145913551 53626 Insm1 IA-1 insulinoma-associated 1 MGI:1859980 Mm.379070 2 2 G1 INSM1 3642 0 TAAAGGAAAGGCTAGCACGTCAG AGTCTTCAGCCATCATGAAGAGG 6 10 2 1.1.2.2.2.10 BCBC-5B-0 14132162 P212942 Csrp2 Enhancer P212942 Enhancer Unique Tile chr10:110324529-110325474 (+) NM_007792 + 218 110324311 13008 Csrp2 AW551867|Crp2|SmLim cysteine and glycine-rich protein 2 MGI:1202907 Mm.2020 10 10 D1 CSRP2 1466 0 AGGTAAATCATCCCCTGTGACCT CAGCCTTGAGGAGTAATGAAGGA 6 10 3 1.1.2.2.3.10 BCBC-5B-0 14132181 P214064 Ppara Enhancer P214064 Enhancer Unique Tile chr15:85559700-85560604 (+) NM_011144 + 2937 85563541 19013 Ppara Nr1c1|PPAR-alpha|PPARalpha|Ppar peroxisome proliferator activated receptor alpha MGI:104740 Mm.212789 15 15 E2|15 48.8 cM PPARA 5465 0 TGTAGTCACATGGATCCACAAGG AGCCTCCTATCCTGTGTCATCTG 6 10 4 1.1.2.2.4.10 BCBC-5B-0 14132200 P214814 Foxo3a Enhancer P214814 Enhancer Unique Tile chr10:41963988-41964904 (-) NM_019740 - 253 41965157 56484 Foxo3a 1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3 forkhead box O3a MGI:1890081 Mm.338613; Mm.391700; Mm.417859; Mm.429053; Mm.338613; Mm.391700; Mm.417859; Mm.429053; Mm.338613; Mm.391700; Mm.417859; Mm.429053; Mm.338613; Mm.391700; Mm.417859; Mm.429053; Mm.338613; Mm.391700; Mm.417859; Mm.429053; Mm.338613; Mm.391700; Mm.417859; Mm.429053; Mm.338613; Mm.391700; Mm.417859; Mm.429053; Mm.338613; Mm.391700; Mm.417859; Mm.429053; Mm.338613; Mm.391700; Mm.417859; Mm.429053; Mm.338613; Mm.391700; Mm.417859; Mm.429053; Mm.338613; Mm.391700; Mm.417859; Mm.429053; Mm.338613; Mm.391700; Mm.417859; Mm.429053; Mm.338613; Mm.391700; Mm.417859; Mm.429053; Mm.338613; Mm.391700; Mm.417859; Mm.429053 10 10 B2|10 30.0 cM FOXO3A 2309 0 TCCAGTGACTCCGGATCTGTT TATCCTGTGTTGGAGCCTAGTCC 6 10 5 1.1.2.2.5.10 BCBC-5B-0 14132219 P215936 Rufy3 Enhancer P215936 Enhancer Unique Tile chr5:89654477-89655414 (+) NM_027530 + 2720 89658134 52822 Rufy3 2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|mKIAA0871 RUN and FYVE domain containing 3 MGI:106484 Mm.270469 5 5 E1|5 48.0 cM RUFY3 22902 NM_023054 + 25434 89629043 65961 Crlz1 0 TTTGGGAGACTTTAGGGTGTGAA CCATCAGATAAACACACGGATCA 6 10 6 1.1.2.2.6.10 BCBC-5B-0 14132238 P216776 Wt1 Enhancer P216776 Enhancer Unique Tile chr2:104923041-104923948 (+) NM_144783 + 3419 104927367 22431 Wt1 D630046I19Rik|Wt-1 Wilms tumor homolog MGI:98968 Mm.389339 2 2 E|2 58.0 cM WT1 7490 0 TGAATCTGGGGTCAGGAGTTCTA GAATAAACACGCTGTAGCCTTGC 6 10 7 1.1.2.2.7.10 BCBC-5B-0 14132257 P217526 Cdh8 Enhancer P217526 Enhancer Unique Tile chr8:102303899-102304802 (+) NM_007667;NM_001039154; - 646 102305448 12564 Cdh8 AI851472 cadherin 8 MGI:107434 Mm.220765 8 8 D1|8 46.5 cM CDH8 1006 NM_175479 + 980 102305782 234624 A330008L17Rik 0 ACTGCTTGCAATCTTCAGAAACC GCTAGAGGAGCAGGTTCCTTGTT 6 10 8 1.1.2.2.8.10 BCBC-5B-0 14132276 P218566 1700008F21Rik Enhancer P218566 Enhancer Unique Tile chr8:131955291-131956352 (+) NM_029292 + 2068 131953223 75453 1700008F21Rik - RIKEN cDNA 1700008F21 gene MGI:1922703 Mm.286964 8 8 E2 NM_029061 - 3728 131951563 74703 Ccdc7 0 TAGGTGTGACTGAAGGTGATGGA ATTTCAAACTCACCAAGGACCAA 6 10 9 1.1.2.2.9.10 BCBC-5B-0 14132295 P219316 Mrps28 Enhancer P219316 Enhancer Unique Tile chr3:8910731-8911670 (-) NM_025434 - 3835 8906896 66230 Mrps28 1500012D08Rik|AW061224 mitochondrial ribosomal protein S28 MGI:1913480 Mm.38460 3 3 A1 MRPS28 28957 NM_001025264;NM_009412;NM_001025261;NM_001025262;NM_001025263; - 35457 8947127 21985 Tpd52 0 CAGGAAAGGGTGAGTCATTTTTG CTTTACCACTGAATCATCTGCCC 6 10 10 1.1.2.2.10.10 BCBC-5B-0 14132314 P220156 ProximalPromoter P220156 ProximalPromoter No Hits Tile 0 ttcctgagagtaggaggggtttc aaggctgagaaaccaaagaggat 6 10 11 1.1.2.2.11.10 BCBC-5B-0 14132333 P221278 Irx3 ProximalPromoter P221278 ProximalPromoter Unique Tile chr8:94690602-94691557 (-) NM_008393 - 100 94690502 16373 Irx3 AI894186 Iroquois related homeobox 3 (Drosophila) MGI:1197522 Mm.238044 8 8 C5|8 42.1 cM IRX3 79191 NM_176904 + 1060 94689542 319388 D230002A01Rik 1 AGGCAGCACGTTCACTCTTTTAG CTCTGATTGACATTTCTACGGGG 6 10 12 1.1.2.2.12.10 BCBC-5B-0 14132352 P222028 Olfr1373 ProximalPromoter P222028 ProximalPromoter Unique Tile chr11:51988864-51989778 (-) NM_207227 - 87 51988951 211472 Olfr1373 GA_x6K02T2QP88-3283154-3284089|MGC123567 olfactory receptor 1373 MGI:3031207 Mm.377235 11 11 B1.3 NM_203509 - 11552 52001330 272723 NP_TR6JSE50FPA 0 GACTGCTAATGGAGGGAGACTCA AAGCAAAAAGGGTTGGTTCTAGG 6 10 13 1.1.2.2.13.10 BCBC-5B-0 14132371 P223150 Panx1 Enhancer P223150 Enhancer Unique Tile chr9:14797698-14798718 (-) NM_019482 - 1827 14795871 55991 Panx1 AI847747 pannexin 1 MGI:1860055 Mm.142253 9 9 A2 PANX1 24145 0 TCTGGAGTTAGGGAGATGGTTCA ATGGGTACAAGAGCTGGGTATGA 6 10 14 1.1.2.2.14.10 BCBC-5B-0 14132390 P223990 Cdc42ep4 Enhancer P223990 Enhancer Unique Tile chr11:113565888-113566826 (-) NM_020006 - 582 113567408 56699 Cdc42ep4 1500041M20Rik|Borg4|CEP4 CDC42 effector protein (Rho GTPase binding) 4 MGI:1929760 Mm.293378 11 11 E2 CDC42EP4 23580 NM_026682;NM_029794; - 39781 113526107 52670 D11Ertd636e 0 GCTGTGGGTGAGTGTCCTAGACT AGTGGGAAATAGTTAAGGGGCAA 6 10 15 1.1.2.2.15.10 BCBC-5B-0 14132409 P224740 Wfdc13 ProximalPromoter P224740 ProximalPromoter Unique Tile chr2:164375222-164376239 (+) NM_001012704 + 72 164376311 408190 Wfdc13 Wfdc13l1 WAP four-disulfide core domain 13 MGI:3582777 Mm.376205 2 2H3 WFDC13 164237 NM_030058 + 13466 164389705 78239 Spint4 0 ATAGTGGAAAGCTGTGGTGTGGT GCTGTCCTTTCATCCTCTCATGT 6 10 16 1.1.2.2.16.10 BCBC-5B-0 14132428 P001487 Blank P001487 Buffer Control Negative Blank 6 10 17 1.1.2.2.17.10 BCBC-5B-0 14132447 P225854 Mtx1 Pdx1 P225854 Pdx1 Unique Tile chr3:89299109-89299837 (+) NM_013604 - 4 89299833 17827 Mtx1 Gcap6|Mtx metaxin 1 MGI:103025 Mm.280943 3 3 F1|3 44.2 cM MTX1 4580 NM_013691 + 1296 89301133 21827 Thbs3 0 ATGCCATCTACACTGTAAAGCCT GTCAGAGAGCGTACAAGATGGC 6 10 18 1.1.2.2.18.10 BCBC-5B-0 14132466 P226982 Pdx1 P226982 Pdx1 Unique Tile chr4:55770356-55771280 (+) 0 ATCACAAACATCAACTTGCTTG TAACAGGATCTGTCCCTTGCTCT 6 10 19 1.1.2.2.19.10 BCBC-5B-0 14132485 P003268 Blank P003268 Buffer Control Negative Blank 6 10 20 1.1.2.2.20.10 BCBC-5B-0 14132125 P211328 PufferfishHuman P211328 PufferfishHuman Unique Tile chr6:99038635-99039700 (+) 0 AAATCTTGTGGAGCTGGACTGAG AAGGTAGGTATTCGGTGCTCCTC 6 11 1 1.1.2.2.1.11 BCBC-5B-0 14132144 P212168 miRNA P212168 miRNA Unique Tile chr13:48555706-48556609 (-) mmu-let-7d 0 TGGAAAGGTAGAGGAATGCAAAA ATTTGGAACATTCATTGGTGGTG 6 11 2 1.1.2.2.2.11 BCBC-5B-0 14132163 P212918 Cfl2 Enhancer P212918 Enhancer Unique Tile chr12:55779950-55780958 (-) NM_007688 - 3 55780955 12632 Cfl2 - cofilin 2, muscle MGI:101763 Mm.276826 12 12 C1 CFL2 1073 2 CCTCCTTCTTCTCGTCCCAGT TCACTGTAACTCCAGATGCCTGA 6 11 3 1.1.2.2.3.11 BCBC-5B-0 14132182 P214040 Pdgfra Enhancer P214040 Enhancer Unique Tile chr5:75434533-75435423 (+) NM_011058 + 493 75434040 18595 Pdgfra AI115593|CD140a|Pdgfr-2 platelet derived growth factor receptor, alpha polypeptide MGI:97530 Mm.221403; Mm.401592; Mm.221403; Mm.401592; Mm.221403; Mm.401592; Mm.221403; Mm.401592; Mm.221403; Mm.401592; Mm.221403; Mm.401592; Mm.221403; Mm.401592; Mm.221403; Mm.401592; Mm.221403; Mm.401592; Mm.221403; Mm.401592; Mm.221403; Mm.401592; Mm.221403; Mm.401592; Mm.221403; Mm.401592; Mm.221403; Mm.401592; Mm.221403; Mm.401592; Mm.221403; Mm.401592; Mm.221403; Mm.401592 5 5 C3.3|5 42.0 cM PDGFRA 5156 0 CTGGGACGAACACCAAGTAACAT GTGGTTGGCCTCTTACATTTCTG 6 11 4 1.1.2.2.4.11 BCBC-5B-0 14132201 P214790 Pias1 Enhancer P214790 Enhancer Unique Tile chr9:62777565-62778481 (-) NM_019663 - 401 62778882 56469 Pias1 2900068C24Rik|Ddxbp1|GBP protein inhibitor of activated STAT 1 MGI:1913125 Mm.306663; Mm.431253; Mm.306663; Mm.431253; Mm.306663; Mm.431253; Mm.306663; Mm.431253; Mm.306663; Mm.431253; Mm.306663; Mm.431253; Mm.306663; Mm.431253; Mm.306663; Mm.431253; Mm.306663; Mm.431253; Mm.306663; Mm.431253; Mm.306663; Mm.431253; Mm.306663; Mm.431253; Mm.306663; Mm.431253; Mm.306663; Mm.431253 9 9 B PIAS1 8554 0 GTGTAGGCTGCTCTGGGAAGA TTAGTTAAGAACTGCCTGCCTGC 6 11 5 1.1.2.2.5.11 BCBC-5B-0 14132220 P215630 Ergic2 Enhancer P215630 Enhancer Unique Tile chr6:148168163-148169156 (-) NM_026168;NM_026355; - 0 148169156 67456 Ergic2 1200009B18Rik|4930572C01Rik|AA408438|Ptx1 ERGIC and golgi 2 MGI:1914706 Mm.59812 6 6 G3 ERGIC2 51290 1 TGGGACCGTACCACTAGGTAAGA TATTTAAATGGCAAACCCTGGTG 6 11 6 1.1.2.2.6.11 BCBC-5B-0 14132239 P216752 Ugp2 Enhancer P216752 Enhancer Unique Tile chr11:21268929-21269849 (-) NM_139297 - 612 21270461 216558 Ugp2 MGC38262 UDP-glucose pyrophosphorylase 2 MGI:2183447 Mm.28877 11 11 A3.1|11 12.0 cM UGP2 7360 0 TATCTTTGTGGGACAAGGAAACC TCAAATGTGTCGTCTTGAATTGC 6 11 7 1.1.2.2.7.11 BCBC-5B-0 14132258 P217502 Obfc1 Enhancer P217502 Enhancer Unique Tile chr19:47587082-47588008 (-) NM_175360 - 2323 47590331 108689 Obfc1 0610009H20Rik|2310057J23Rik|AI413458 oligonucleotide/oligosaccharide-binding fold containing 1 MGI:1915581 Mm.218048 19 19 D1 OBFC1 79991 NM_009289 + 45321 47633329 20874 Slk 0 TGGAATAATTTAGGTGGCTGTGG TTGTTGTTTTCTGGCCTTGATCT 6 11 8 1.1.2.2.8.11 BCBC-5B-0 14132277 P218542 Alg14 ProximalPromoter P218542 ProximalPromoter Unique Tile chr3:121275169-121276112 (-) NM_024178 + 7727 121283839 66789 Alg14 5430428G01Rik|AI854024 asparagine-linked glycosylation 14 homolog (yeast) MGI:1914039 Mm.269881 3 3 G1 ALG14 199857 NM_178936 - 19830 121255339 99887 Tmem56 0 TGGGGATCTATCTGGGGATCTAT TTAAGTCACTGCTTGGGTGTCAA 6 11 9 1.1.2.2.9.11 BCBC-5B-0 14132296 P219382 Nsfl1c ProximalPromoter P219382 ProximalPromoter Unique Tile chr2:151184771-151185813 (+) NM_198326 + 65 151185748 386649 Nsfl1c MGC61403|MGC86097|Munc-18c|Stxbp3a|p47 NSFL1 (p97) cofactor (p47) MGI:3042273 Mm.297814; Mm.389629; Mm.297814; Mm.389629; Mm.297814; Mm.389629; Mm.297814; Mm.389629; Mm.297814; Mm.389629; Mm.297814; Mm.389629; Mm.297814; Mm.389629; Mm.297814; Mm.389629 2 2 G3 NSFL1C 55968 NM_198655 - 17179 151167592 381393 4921509C19Rik 0 TGAGATCCTCATTGTCTGATCCA CTGTCCTCCTCAGTGCCAGTC 6 11 10 1.1.2.2.10.11 BCBC-5B-0 14132315 P220132 Krtap5-1 ProximalPromoter P220132 ProximalPromoter Duplication Tile chr7:142106479-142107387 (-) NM_015808 - 20 142106459 50774 Krtap5-1 - keratin associated protein 5-1 MGI:1354732 Mm.389993 7 7 F5 NM_015809 + 5597 142112984 50775 Krtap5-4 0 CATTACCACCCCATCATTCTCAT GGATGGAGTAGATCAGAGGAGCA 6 11 11 1.1.2.2.11.11 BCBC-5B-0 14132334 P221254 ProximalPromoter P221254 ProximalPromoter No Hits Tile 0 tgtcacacggcgagtagacttag aaaacccagcagcacgaactc 6 11 12 1.1.2.2.12.11 BCBC-5B-0 14132353 P222004 Olfr1467 ProximalPromoter P222004 ProximalPromoter Unique Tile chr19:13430819-13431721 (+) NM_146691 + 73 13431648 258686 Olfr1467 MOR202-15 olfactory receptor 1467 MGI:3031301 Mm.377640 19 - NM_146694 + 22041 13408778 258689 Olfr1466 0 ATTTGCCTCTGCTGGTTGAATTA GAATTTGAAGTTCTGGGTCATCG 6 11 13 1.1.2.2.13.11 BCBC-5B-0 14132372 P222844 Camk2d ProximalPromoter P222844 ProximalPromoter Unique Tile chr3:126587981-126588928 (+) NM_001025439;NM_001025438;NM_023813; + 66 126588994 108058 Camk2d 2810011D23Rik|8030469K03Rik|KIAA4163|MGC60852|[d]-CaMKII|mKIAA4163 calcium/calmodulin-dependent protein kinase II, delta MGI:1341265 Mm.255822 3 3 G1-G2 CAMK2D 817 0 GCTCAGAAATGATCTTAGCCACC ACACCTCCCTCTAGCGACTCC 6 11 14 1.1.2.2.14.11 BCBC-5B-0 14132391 P223966 Glra1 ProximalPromoter P223966 ProximalPromoter Unique Tile chr11:55451691-55452645 (-) NM_020492 - 478 55451213 14654 Glra1 B230397M16Rik|oscillator|ot|spasmodic|spd glycine receptor, alpha 1 subunit MGI:95747 Mm.89320 11 11 B1.3|11 30.0 cM GLRA1 2741 0 ACTGTCTCTGACTCCATTCCCTG AGTTAGATGTCGGAGAGTGTGCC 6 11 15 1.1.2.2.15.11 BCBC-5B-0 14132410 P224716 1700003E24Rik ProximalPromoter P224716 ProximalPromoter Unique Tile chrX:89407779-89408748 (+) NM_183280 + 124 89408872 69357 1700003E24Rik MGC107104 RIKEN cDNA 1700003E24 gene MGI:1916607 Mm.336149 X X C3 2 AAAAATCCACCTGCCTCTACCTC ATGAAGGCAATAGTGGCTGGATA 6 11 16 1.1.2.2.16.11 BCBC-5B-0 14132429 P001463 Blank P001463 Buffer Control Negative Blank 6 11 17 1.1.2.2.17.11 BCBC-5B-0 14132448 P225920 5730507A09Rik Pdx1 P225920 Pdx1 End Repeat Tile chr7:64684645-64685473 (+) NM_183087 - 32059 64652586 70638 5730507A09Rik AW047451 RIKEN cDNA 5730507A09 gene MGI:1917888 Mm.19944 7 7 C 1 GCTCCCTCTTGGGAGGTATTAAA CACACACACACACACACACACAC 6 11 18 1.1.2.2.18.11 BCBC-5B-0 14132467 P226958 Thbs1 Pdx1 P226958 Pdx1 Unique Tile chr2:117796940-117797863 (+) NM_011580 + 5499 117803362 21825 Thbs1 TSP-1|TSP1|Thbs-1|tbsp1 thrombospondin 1 MGI:98737 Mm.4159 2 2 F1-F3|2 65.0 cM THBS1 7057 0 TACAAGGAGAGTTGTCCAGGGTC GACGGTGTTCAGTTCTCTGAGGT 6 11 19 1.1.2.2.19.11 BCBC-5B-0 14132486 P003196 Blank P003196 Buffer Control Negative Blank 6 11 20 1.1.2.2.20.11 BCBC-5B-0 14132126 P211022 2410193C02Rik PufferfishHuman P211022 PufferfishHuman Unique Tile chr8:81446069-81447166 (-) NM_001009981;NM_001009980; + 40423 81405646 76775 2410193C02Rik P7 RIKEN cDNA 2410193C02 gene MGI:1924025 Mm.334631 8 8 C3 NM_009033 - 41069 81405000 19656 Rbmxrt 2 TCATTTGAAAACCAGGAAGCAGT CATTTCCACAGAAAGAAACCCAC 6 12 1 1.1.2.2.1.12 BCBC-5B-0 14132145 P212144 Mafb ChickenHuman P212144 ChickenHuman Unique Tile chr2:160080963-160081915 (+) NM_010658 - 22520 160058443 16658 Mafb Kreisler|Krml|Krml1|kr v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian) MGI:104555 Mm.330745 2 2 H2|2 91.0 cM MAFB 9935 0 CTCTCTCTCTCACCGTGTTGTCA CAAGGCAGTCATATGGGTTTTTC 6 12 2 1.1.2.2.2.12 BCBC-5B-0 14132164 P212894 Cbx5 Enhancer P212894 Enhancer Unique Tile chr15:103019633-103020540 (+) NM_007626 - 22781 103043321 12419 Cbx5 2610029O15Rik|C75991|HP1|Hp1a chromobox homolog 5 (Drosophila HP1a) MGI:109372 Mm.262059 15 15 F3 CBX5 23468 NM_027885 - 23617 102996016 71726 Smug1 0 GAAAAGAGGAAAAAGAGGGTGGA GACAGGTCGTCCACTGAACTCTT 6 12 3 1.1.2.2.3.12 BCBC-5B-0 14132183 P214016 Nnat Enhancer P214016 Enhancer Unique Tile chr2:157248860-157249904 (+) NM_010923;NM_180960; + 1659 157251563 18111 Nnat 5730414I02Rik|AW107673|Peg5 neuronatin MGI:104716 Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330 2 2 H1|2 88.0 cM NNAT 4826 NM_016916 - 7862 157257766 53619 Blcap 0 GATAAGTGCAAAAACAAGCCCTG TGTTAACCATGATCCATTTTCCC 6 12 4 1.1.2.2.4.12 BCBC-5B-0 14132202 P214856 B4galt5 Enhancer P214856 Enhancer Unique Tile chr2:167038708-167039742 (-) NM_019835 - 646 167040388 56336 B4galt5 9430078I07Rik|AW049941|AW539721 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5 MGI:1927169 Mm.200886; Mm.426979; Mm.200886; Mm.426979; Mm.200886; Mm.426979; Mm.200886; Mm.426979; Mm.200886; Mm.426979; Mm.200886; Mm.426979; Mm.200886; Mm.426979; Mm.200886; Mm.426979; Mm.200886; Mm.426979 2 2 H3 B4GALT5 9334 0 AGAGAAGAAACGGAATGGGTAGC TTCTTTCTCATCGAAAAAGGCTG 6 12 5 1.1.2.2.5.12 BCBC-5B-0 14132221 P215606 1700037H04Rik Enhancer P215606 Enhancer Unique Tile chr2:130848973-130849892 (-) NM_026091 - 1569 130851461 67326 1700037H04Rik - RIKEN cDNA 1700037H04 gene MGI:1914576 Mm.27711 2 2 F3 NM_027641 - 16299 130866191 70997 Spef1 0 TCCATAACCACCACCTGTTTACC TAGGCCACCTCACAACTTCTAGC 6 12 6 1.1.2.2.6.12 BCBC-5B-0 14132240 P216728 Hexim1 Enhancer P216728 Enhancer Unique Tile chr11:102927683-102928665 (+) NM_138753 + 3749 102932414 192231 Hexim1 7330426E13Rik|CLP-1|Clp1|HIS1 hexamethylene bis-acetamide inducible 1 MGI:2385923 Mm.8763 11 11 E1 HEXIM1 10614 NM_025988 + 9820 102917863 67131 Acbd4 0 CTCTTCTTTATCCTGTGGCCCTT ATCTTGATAGGGAGCAACAACCA 6 12 7 1.1.2.2.7.12 BCBC-5B-0 14132259 P217478 Srrm2 Enhancer P217478 Enhancer Unique Tile chr17:23530941-23531841 (+) NM_175229 + 92 23530849 75956 Srrm2 5033413A03Rik|AA410130|mKIAA0324 serine/arginine repetitive matrix 2 Mm.5222 17 17 A3.3 NM_029798 - 17122 23513819 76917 2810417J12Rik 1 CGAGGGATACGAAAACTTAAGCA AGCCTGATCTACACGGTTAGTGC 6 12 8 1.1.2.2.8.12 BCBC-5B-0 14132278 P218236 Tspan9 ProximalPromoter P218236 ProximalPromoter Unique Tile chr6:128109354-128110273 (-) NM_175414 - 157 128109197 109246 Tspan9 6720474K14Rik|9430079M16Rik|AU018597 tetraspanin 9 MGI:1924558 Mm.21814 6 6 F3 TSPAN9 10867 0 ACATAGCCAGCGACTATCAAAGC GCAAAGCAAAGACGATTGAAAGA 6 12 9 1.1.2.2.9.12 BCBC-5B-0 14132297 P219358 Olfr1259 ProximalPromoter P219358 ProximalPromoter Unique Tile chr2:89744893-89745913 (-) NM_146341 - 59 89744952 258338 Olfr1259 MOR232-9 olfactory receptor 1259 MGI:3031093 Mm.354180 2 - NM_146978 + 14244 89730649 258980 Olfr1258 0 TGAAGCACACTGTTCCTTTTCAA TTGGGGGTTCTGTGTAAGACCTA 6 12 10 1.1.2.2.10.12 BCBC-5B-0 14132316 P220108 Exosc2 ProximalPromoter P220108 ProximalPromoter Unique Tile chr2:31491806-31492776 (+) NM_144886 + 32 31492744 227715 Exosc2 MGC30456|Rrp4 exosome component 2 MGI:2385133 Mm.150972 2 2 B EXOSC2 23404 NM_009594 + 18545 31511321 11350 Abl1 0 CCTGTAAATCCCGGTCCTAAATC CTTTAGGGAGCCTCATCTCCAAC 6 12 11 1.1.2.2.11.12 BCBC-5B-0 14132335 P221230 Vrk2 ProximalPromoter P221230 ProximalPromoter Unique Tile chr11:26493846-26494803 (-) NM_027260 - 235 26493611 69922 Vrk2 2810003O05Rik|AI447698 vaccinia related kinase 2 MGI:1917172 Mm.285351 11 11 A3.3 VRK2 7444 NM_001039235 + 621 26493225 628586 LOC628586 0 CTTATGAAGGCAAATCCCACAAG TGCAGATTAACCTGGGGGTAGTA 6 12 12 1.1.2.2.12.12 BCBC-5B-0 14132354 P222070 Pla2r1 Enhancer P222070 Enhancer Unique Tile chr2:60352311-60353249 (-) NM_008867 - 851 60354100 18779 Pla2r1 Pla2g1br phospholipase A2 receptor 1 MGI:102468 Mm.5092 2 2 C1.1 PLA2R1 22925 0 GAAGCCCAAGGAAAAGAATCAGT ACCTCCACTCTTTTCCCCAATAC 6 12 13 1.1.2.2.13.12 BCBC-5B-0 14132373 P222820 BC019731 ProximalPromoter P222820 ProximalPromoter Unique Tile chr5:140066859-140067764 (-) NM_144914 - 143 140066716 231832 BC019731 MGC30809|MGC37596 cDNA sequence BC019731 MGI:2385897 Mm.46582 5 5 G2 MGC9712 202915 NM_025604 - 11537 140079301 66506 1810042K04Rik 2 CTAGGCAGGGCTCTACAACTGAG CTGGCACTAGGTAGTCAGGCAGT 6 12 14 1.1.2.2.14.12 BCBC-5B-0 14132392 P223942 D14Ertd581e Enhancer P223942 Enhancer Unique Tile chr14:97979878-97980910 (+) NM_029454;NM_029320; + 1656 97982566 52023 D14Ertd581e 1700017E21Rik|4930513H15Rik|4933438D16Rik|4933439E17Rik|Pibf1 DNA segment, Chr 14, ERATO Doi 581, expressed MGI:1261910 Mm.22835 14 14 E2.1|14 47.0 cM C13orf24 10464 NM_028315 - 1964 97982874 72662 2810028N01Rik 0 TGCTGAAACATACCATTTCATCG AAACCTACATCGAGCAAGAGCAG 6 12 15 1.1.2.2.15.12 BCBC-5B-0 14132411 P224692 Zbtb9 ProximalPromoter P224692 ProximalPromoter Unique Tile chr17:26699671-26700630 (+) NM_001005916 + 137 26700767 474156 Zbtb9 3930402F13Rik zinc finger and BTB domain containing 9 MGI:1918022 Mm.328890 17 17 A3.3 NM_026307;NM_026948; - 32606 26667065 67675 Cuta 0 TTGGCTGTTGTAATTATCTGGGG GTTCCCTCAGTTCTGGAGTAGCA 6 12 16 1.1.2.2.16.12 BCBC-5B-0 14132430 P225532 9130019O22Rik ProximalPromoter P225532 ProximalPromoter Unique Tile chr7:127178257-127179249 (-) NM_030226 - 27 127178284 78921 9130019O22Rik - RIKEN cDNA 9130019O22 gene MGI:1926171 Mm.200950 7 7 F3 NM_198011 - 5518 127184767 101604 E430018J23Rik 0 CTGAGCATGAGCTCACAGAGGTA AGCACAGTGGAGATTTCCTGAAG 6 12 17 1.1.2.2.17.12 BCBC-5B-0 14132449 P225896 1810063B05Rik Pdx1 P225896 Pdx1 Unique Tile chr8:129307993-129308802 (+) NM_174987 + 142 129308660 67892 1810063B05Rik AI447995 RIKEN cDNA 1810063B05 gene MGI:1915142 Mm.31946 8 8 E2 C1orf31 388753 0 GAATTCTTGATTATGACGGTCGG CTTTCCTTCATGGAAGGGGCT 6 12 18 1.1.2.2.18.12 BCBC-5B-0 14132468 P226934 1110051M20Rik Pdx1 P226934 Pdx1 Unique Tile chr2:91240751-91241673 (+) NM_175123 - 3788 91245461 228356 1110051M20Rik AI586322|MGC40841|MGC4707 RIKEN cDNA 1110051M20 gene MGI:1915079 Mm.386861 2 2 E1 C11orf49 79096 NM_172668 + 16866 91258539 228357 Lrp4 0 CTCTGGGTTTGAAAGGCTCACTA ACACAACCACCTACTTGCTGACC 6 12 19 1.1.2.2.19.12 BCBC-5B-0 14132487 P003100 Blank P003100 Buffer Control Negative Blank 6 12 20 1.1.2.2.20.12 BCBC-5B-0 14132127 P210998 PufferfishHuman P210998 PufferfishHuman Unique Tile chr2:56673563-56674533 (-) 0 TCTTCTCCCCATGACAGATTTTT ATCTCAGATACACCCACTGAGGC 6 13 1 1.1.2.2.1.13 BCBC-5B-0 14132146 P212120 Krt2-25 ChickenHuman P212120 ChickenHuman Unique Tile chr15:101263035-101264059 (+) NM_001003668 - 2745 101266804 406219 Krt2-25 - keratin complex 2, basic, gene 25 Mm.425942 15 15 F2 NM_025487 + 11742 101275801 66322 1700011A15Rik 1 TTTGGATCTTACAGGAGAGCCAG ACCATCTTCTAGCCTCCATAGCC 6 13 2 1.1.2.2.2.13 BCBC-5B-0 14132165 P212870 Bmpr1b Enhancer P212870 Enhancer Unique Tile chr3:141914590-141915646 (-) NM_007560 - 3992 141919638 12167 Bmpr1b AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-IB|CFK-43a bone morphogenetic protein receptor, type 1B MGI:107191 Mm.39089 3 3 H1 BMPR1B 658 0 ATAAATTGCTTGTGCAGTGCTGA GCAAAGAAACTTCCTGCACACTT 6 13 3 1.1.2.2.3.13 BCBC-5B-0 14132184 P213710 Cdh11 Enhancer P213710 Enhancer Unique Tile chr8:105672745-105673646 (-) NM_009866 - 494 105674140 12552 Cdh11 2610005L07Rik|2810038F24|Cad11|MGC25339 cadherin 11 MGI:99217 Mm.1571 8 8 D2|8 46.5 cM CDH11 1009 0 ATGTCTCTAGGGAAAGTCGACCC GTGCCAGGCTTTCATTAACAAAC 6 13 4 1.1.2.2.4.13 BCBC-5B-0 14132203 P214832 Pex14 Enhancer P214832 Enhancer Unique Tile chr4:147942520-147943464 (-) NM_019781 - 145 147943609 56273 Pex14 Pex14p|R75137 peroxisomal biogenesis factor 14 MGI:1927868 Mm.184172 4 4 E2 PEX14 5195 NM_001025296;NM_010044; + 4488 147947952 13347 Dffa 0 GACCCCCGATTTAGTGTTTTCTC CTTGCTACCCACTTCTGCACTTT 6 13 5 1.1.2.2.5.13 BCBC-5B-0 14132222 P215582 Eif2s2 Enhancer P215582 Enhancer Unique Tile chr2:154583157-154584130 (-) NM_026030 - 89 154584219 67204 Eif2s2 2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B|MGC130606 eukaryotic translation initiation factor 2, subunit 2 (beta) MGI:1914454 Mm.377134 2 2 H1|2 90.0 cM EIF2S2 8894 0 GTGAGAGGCTGAGCTGGAGTTAG ACCATAAACGCCTTGTGATCAGT 6 13 6 1.1.2.2.6.13 BCBC-5B-0 14132241 P216704 Ppp1r3f Enhancer P216704 Enhancer Unique Tile chrX:6727208-6728210 (-) NM_138605 - 2869 6731079 54646 Ppp1r3f DXImx48e|Sfc15 protein phosphatase 1, regulatory (inhibitor) subunit 3F MGI:1859617 Mm.148163 X X A1.1|X 1.4 cM PPP1R3F 89801 NM_054039 + 8441 6736651 20371 Foxp3 0 AATCACTTCTTATTCCATCGGCA CCAATCACTGAGGACTCAAAACC 6 13 7 1.1.2.2.7.13 BCBC-5B-0 14132260 P217544 Gpr4 Enhancer P217544 Enhancer Unique Tile chr7:18375249-18376170 (+) NM_175668 + 3769 18379939 319197 Gpr4 - G protein-coupled receptor 4 MGI:2441992 Mm.135984 7 7 A3 GPR4 2828 NM_207525 + 10704 18386874 403187 Opa3 0 TGAATAACAGCCCTTCCTCTCTG AAGTATTCGCTTAACAAGCACGG 6 13 8 1.1.2.2.8.13 BCBC-5B-0 14132279 P218212 Slc4a8 Enhancer P218212 Enhancer Unique Tile chr15:100589920-100590975 (+) NM_021530 + 85 100589835 59033 Slc4a8 kNBC-3 solute carrier family 4 (anion exchanger), member 8 MGI:1928745 Mm.209856 15 15 F3 SLC4A8 9498 NM_172451 - 32510 100557410 207839 Galnt6 1 AGCTCAACCTGGAACCTACCG ATTCACCACATGCAGGAAGTTCT 6 13 9 1.1.2.2.9.13 BCBC-5B-0 14132298 P219334 Pisd ProximalPromoter P219334 ProximalPromoter Unique Tile chr5:33102662-33103571 (-) NM_177298 - 179 33102483 320951 Pisd 9030221M09Rik phosphatidylserine decarboxylase MGI:2445114 Mm.273765 5 5 B1 PISD 23761 NM_194340 - 40961 33144532 215476 C330019G07Rik 0 GTGTGTGTTTCTTTTCCAGGCTC AAAATCTGAGCCACCTTGTGCT 6 13 10 1.1.2.2.10.13 BCBC-5B-0 14132317 P220084 V1rb10 ProximalPromoter P220084 ProximalPromoter Unique Tile chr6:89710997-89711897 (+) NM_053240 + 30 89711927 113867 V1rb10 - vomeronasal 1 receptor, B10 MGI:2148521 Mm.377163 X X F2 NM_053230 + 88 89711985 113857 V1rb9 0 AACATCAATGCTGTCCTTTGCTT ACCAACACTGAGATGGCAAAAAG 6 13 11 1.1.2.2.11.13 BCBC-5B-0 14132336 P220924 Olfr30 ProximalPromoter P220924 ProximalPromoter Unique Tile chr11:58272082-58273036 (-) NM_146878 - 60 58272142 18329 Olfr30 MOR281-1|MTPCR07 olfactory receptor 30 MGI:109305 Mm.222836 11 - NM_207527 - 2960 58269122 403200 4930504O13Rik 0 GGATAAGACTTGTTTATCGGGGG TGTTAAAAAGGCTTGTCAGCACA 6 13 12 1.1.2.2.12.13 BCBC-5B-0 14132355 P222046 1810030J14Rik Enhancer P222046 Enhancer Unique Tile chr1:176171165-176172080 (+) NM_025470 + 3960 176167205 66289 1810030J14Rik AV054416 RIKEN cDNA 1810030J14 gene MGI:1913539 Mm.330519; Mm.7150; Mm.330519; Mm.7150; Mm.330519; Mm.7150; Mm.330519; Mm.7150 1 1 H3 NM_207137 + 33513 176205593 258238 Olfr417 0 AGTTGCTTAATACTGGCGATCCA TTGCTCCCTCTCACAACTACTCC 6 13 13 1.1.2.2.13.13 BCBC-5B-0 14132374 P222796 Arhgap6 ProximalPromoter P222796 ProximalPromoter Unique Tile chrX:164379704-164380778 (+) NM_178754;NM_009707; + 45 164380733 11856 Arhgap6 AI504284|C130038E13|RhoGAPX-1 Rho GTPase activating protein 6 MGI:1196332 Mm.386750 X X F5 ARHGAP6 395 0 TCACAGGGGTCACAATCCTACTT CTAGCGTAGCTGGCACTGAGTC 6 13 14 1.1.2.2.14.13 BCBC-5B-0 14132393 P223918 Fbxl5 ProximalPromoter P223918 ProximalPromoter Unique Tile chr5:44061860-44062935 (-) NM_178729 - 8455 44070315 242960 Fbxl5 Fbl4|Fir4 F-box and leucine-rich repeat protein 5 MGI:2152883 Mm.25794 5 5 B3 FBXL5 26234 NM_009763 + 44220 44107155 12182 Bst1 0 AAAGGAAGCCTCAGAGATTTGGT GAGAAGAGCACGGAAGTCATTGT 6 13 15 1.1.2.2.15.13 BCBC-5B-0 14132412 P224758 Cebpg ProximalPromoter P224758 ProximalPromoter Unique Tile chr7:34765353-34766351 (-) NM_009884 - 90 34765263 12611 Cebpg C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP CCAAT/enhancer binding protein (C/EBP), gamma MGI:104982 Mm.273090 7 7 B2 CEBPG 1054 1 AGGGGTAAAATCGTGGTCTTTGT ATAGAAGCGCTGCTTGGAGAAC 6 13 16 1.1.2.2.16.13 BCBC-5B-0 14132431 P225508 Zfp120 ProximalPromoter P225508 ProximalPromoter Unique Tile chr2:149828140-149829059 (-) NM_023266;NM_181266; - 21 149828119 104348 Zfp120 AI315103|E030042N05Rik|F80|MZF31 zinc finger protein 120 MGI:1345179 Mm.254018 2 2 G3 0 AGCAGAGCAGAACACACAGACAC CTTCACTTTTGAGTGGCAGATCC 6 13 17 1.1.2.2.17.13 BCBC-5B-0 14132450 P225872 Olfr920 Pdx1 P225872 Pdx1 Unique Tile chr9:38490338-38491138 (+) NM_146787 + 15122 38506260 258783 Olfr920 MOR165-6 olfactory receptor 920 MGI:3030754 Mm.131149; Mm.403933; Mm.131149; Mm.403933 9 - NM_172767 + 15854 38474484 67776 Loh11cr2a 0 ATCAAGAGAACCCAATACCAGCA CATTTTTGCCAGCTATTGATGTG 6 13 18 1.1.2.2.18.13 BCBC-5B-0 14132469 P226910 Pdx1 P226910 Pdx1 Unique Tile chr7:144172226-144173147 (+) 0 TTAAATCTCTTCAAGGCAGACGG ACAAGTGTTTAACCCCAAAACCC 6 13 19 1.1.2.2.19.13 BCBC-5B-0 14132488 P002422 Stratagene PCR 8 P002422 Spike Control Negative Stratagene PCR 8 6 13 20 1.1.2.2.20.13 BCBC-5B-0 14132128 P210974 PufferfishHuman P210974 PufferfishHuman Unique Tile chr19:44725013-44725994 (+) 1 GTGCCAACAAGGTTCATCTGTCT CCTCCTGGATGGCCTTTATTTAC 6 14 1 1.1.2.2.1.14 BCBC-5B-0 14132147 P212096 3830406C13Rik ChickenHuman P212096 ChickenHuman Unique Tile chr14:11095480-11096431 (+) NM_178141;NM_146051; + 17956 11077524 218734 3830406C13Rik AV167947|MGC36213 RIKEN cDNA 3830406C13 gene MGI:1917937 Mm.44068 14 14 A1 C3orf14 57415 NM_080433 - 42664 11139095 54713 Zfp312 0 CTTGAAGTCACAGCCATTCTCCT CAGTGTGGGGAGAAAGAAAACAC 6 14 2 1.1.2.2.2.14 BCBC-5B-0 14132166 P212936 Csf1 Enhancer P212936 Enhancer Unique Tile chr3:107885436-107886397 (-) NM_007778 - 1882 107888279 12977 Csf1 C87615|CSF-1|Csfm|M-CSF|op colony stimulating factor 1 (macrophage) MGI:1339753 Mm.795 3 3 F3|3 51.0 cM CSF1 1435 0 CAGTTTATCAACCCATAGCTGGC TTCCTTCCTTCATTCCTTCCTTC 6 14 3 1.1.2.2.3.14 BCBC-5B-0 14132185 P213686 Cat Enhancer P213686 Enhancer Unique Tile chr2:103284864-103285844 (-) NM_009804 - 105 103285949 12359 Cat 2210418N07|Cas-1|Cas1|Cs-1 catalase MGI:88271 Mm.4215 2 2 E3|2 57.0 cM CAT 847 0 ATGAAGCAGTGGAAGGAGCAG GGGTTTTAAGGGAGAAAGAGCAA 6 14 4 1.1.2.2.4.14 BCBC-5B-0 14132204 P214808 Mmp16 Enhancer P214808 Enhancer Unique Tile chr4:17778612-17779703 (+) NM_019724 + 925 17780628 17389 Mmp16 MT3-MMP|Mt3mmp matrix metallopeptidase 16 MGI:1276107 Mm.204820 4 4 A3|4 3.6 cM MMP16 4325 0 TAACTGGTTCCAGTATGTGGCCT CAGGAAATAGGCACAGGTTTTTG 6 14 5 1.1.2.2.5.14 BCBC-5B-0 14132223 P215558 Gp2 Enhancer P215558 Enhancer Unique Tile chr7:119254363-119255266 (-) NM_025989 - 3942 119250421 67133 Gp2 2310037I18Rik|AV060639 glycoprotein 2 (zymogen granule membrane) MGI:1914383 Mm.46403 7 7 F1-F2|7 55.0 cM GP2 2813 NM_009470 - 14195 119269461 22242 Umod 0 TATCTGCATAGAGACCAGGCACA CCATCATTGAACCATGAAGATCA 6 14 6 1.1.2.2.6.14 BCBC-5B-0 14132242 P216398 Rcor2 Enhancer P216398 Enhancer Unique Tile chr19:7334506-7335320 (+) NM_054048 + 385 7335705 104383 Rcor2 1A13|AW122124|CoREST|Rcor|Rcor1 REST corepressor 2 MGI:1859854 Mm.283859 19 19 A RCOR2 283248 NM_007750 - 49846 7284660 12868 Cox8a 0 CTGGGTCTGGCTTTGAAAGTCTC AGCTGCTGGCAGGGAAGTAGT 6 14 7 1.1.2.2.7.14 BCBC-5B-0 14132261 P217520 Glis3 Enhancer P217520 Enhancer Unique Tile chr19:28604321-28605297 (-) NM_175459 - 1120 28606417 226075 Glis3 4833409N03Rik|E230012L24|E330013K21Rik GLIS family zinc finger 3 MGI:2444289 Mm.170521; Mm.223508; Mm.170521; Mm.223508; Mm.170521; Mm.223508; Mm.170521; Mm.223508; Mm.170521; Mm.223508; Mm.170521; Mm.223508; Mm.170521; Mm.223508 19 19 C1 GLIS3 169792 0 CCGAGACCCTGTTTCTTCTTTTT AGTCACATGTCCTTGAAGGGTGT 6 14 8 1.1.2.2.8.14 BCBC-5B-0 14132280 P218188 5033428A16Rik ProximalPromoter P218188 ProximalPromoter Unique Tile chr8:91007772-91008726 (+) NM_029074 + 178 91008904 382030 5033428A16Rik - RIKEN cDNA 5033428A16 gene MGI:1921981 Mm.216574 8 8 C4 C16orf69 255919 NM_172757 + 19263 91027989 234549 Heatr3 0 ACTTCCTTGCAACACTTCTGGAC AGCGCTAGATGTTCAACTGGAAG 6 14 9 1.1.2.2.9.14 BCBC-5B-0 14132299 P219310 Cdgap ProximalPromoter P219310 ProximalPromoter Unique Tile chr16:38632361-38633274 (-) NM_020260 - 6 38632367 12549 Cdgap 5830477L08Rik|AU041750 Cdc42 GTPase-activating protein MGI:1333857 Mm.370848 16 16 B4 CDGAP 57514 NM_019804 + 28331 38661605 56375 B4galt4 1 CTTTGAGTTGTCAAGGCACAAGA CTGTCTTACAAATCCCAGGATCG 6 14 10 1.1.2.2.10.14 BCBC-5B-0 14132318 P220150 Olfr1275 Enhancer P220150 Enhancer Unique Tile chr2:111031726-111032641 (-) NM_001011795 - 11 111032630 257980 Olfr1275 MOR245-18 olfactory receptor 1275 MGI:3031109 Mm.377323 2 2 E3 NM_026248 - 1289 111030437 67575 4930430A15Rik 0 AGACAGCTCAAATGAATGAAGCA CTCAGTCTTCTCATTGCCACCTT 6 14 11 1.1.2.2.11.14 BCBC-5B-0 14132337 P220900 Birc1b Enhancer P220900 Enhancer Unique Tile chr13:101303230-101304210 (-) NM_010872 - 881 101302349 17948 Birc1b MGC141528|Naip-rs6|Naip2 baculoviral IAP repeat-containing 1b MGI:1298226 Mm.89961 13 13 D1|13 54.0 cM NM_010870 - 42273 101346483 17951 Birc1e 0 TGATGACAGGGAAAGACACAGAA CCAATTCTCAGCCATTCTAACAA 6 14 12 1.1.2.2.12.14 BCBC-5B-0 14132356 P222022 Kif21b Enhancer P222022 Enhancer Unique Tile chr1:137948355-137949265 (+) NM_001039472 + 544 137947811 16565 Kif21b 2610511N21Rik|KIAA0449|mKIAA0449 kinesin family member 21B MGI:109234 Mm.276135 1 1 E4|1 76.0 cM KIF21B 23046 0 TTTGTTTGGGTGGTAATTTCTGG TTGTCTATGAGCTTCTTCCCAGG 6 14 13 1.1.2.2.13.14 BCBC-5B-0 14132375 P222772 Ddc8 Enhancer P222772 Enhancer Unique Tile chr11:118161752-118162727 (-) NM_021440 - 3128 118158624 58251 Ddc8 - testis specific protein, Ddc8 MGI:1929713 Mm.206505 11 11 E2 NM_011594 - 8671 118171398 21858 Timp2 0 TGTGCCATCTCATTGTCTGACTT CACAGGTTTTCCAGGAGCTTAGA 6 14 14 1.1.2.2.14.14 BCBC-5B-0 14132394 P223612 Ptpru Enhancer P223612 Enhancer Unique Tile chr4:131108402-131109466 (-) NM_011214 - 888 131110354 19273 Ptpru PTP|Ptprl|RPTPlambda protein tyrosine phosphatase, receptor type, U MGI:1321151 Mm.4860 4 4 D2.3|4 61.35 cM NM_025297 + 6080 131115546 26922 Mecr 2 GCATGTGTGTGTGCATATGTGAG ACTGAAGCTGAGCAGTACAACCC 6 14 15 1.1.2.2.15.14 BCBC-5B-0 14132413 P224734 0610011F06Rik ProximalPromoter P224734 ProximalPromoter Unique Tile chr17:25602026-25603001 (+) NM_026686 + 115 25603116 68347 0610011F06Rik - RIKEN cDNA 0610011F06 gene MGI:1915597 Mm.35098 17 17 A3.3 NM_026633 - 5688 25596338 68241 9530058B02Rik 0 ATGTTTAACCCTGAGCTCCATGA AGGAGGCCTCTCAACTCCTAAAA 6 14 16 1.1.2.2.16.14 BCBC-5B-0 14132432 P225484 ProximalPromoter P225484 ProximalPromoter No Hits Tile 1 tgaagatgatgtacagggtgtgg ctcaccttcaatggattctagcg 6 14 17 1.1.2.2.17.14 BCBC-5B-0 14132451 P225848 Pdx1 P225848 Pdx1 Unique Tile chr7:50218967-50219683 (+) 0 CATTTGTCTCCTTTGATCCCTTG GGCTGGGACAGATCTTCATAGGT 6 14 18 1.1.2.2.18.14 BCBC-5B-0 14132470 P226976 Pdx1 P226976 Pdx1 End Repeat Tile chr16:11639734-11640613 (+) 2 GTCAGTGCCTTGTACAGTGGGTC TGTGTGTGTGTGTGTGTGTGTGT 6 14 19 1.1.2.2.19.14 BCBC-5B-0 14132489 P002398 Stratagene PCR 6 P002398 Spike Control Negative Stratagene PCR 6 6 14 20 1.1.2.2.20.14 BCBC-5B-0 14132129 P210950 Prrxl1 PufferfishHuman P210950 PufferfishHuman Unique Tile chr14:31435346-31436329 (-) NM_001001796 + 6411 31428935 107751 Prrxl1 Drg11 paired related homeobox protein-like 1 MGI:2148204 Mm.119274 14 14 B PRRXL1 117065 NM_177134 - 8219 31427127 320321 9430077A04Rik 0 TTACTGTCAGCCCAGGACAAAGT GCCAATAGCTGCCTAAAGACTGA 6 15 1 1.1.2.2.1.15 BCBC-5B-0 14132148 P211790 PufferfishHuman P211790 PufferfishHuman Unique Tile chr13:80659508-80660418 (-) 0 AGTGGGTTTGCTTTCTTATGTGC CCCAACAGAATAACCCATTTCAA 6 15 2 1.1.2.2.2.15 BCBC-5B-0 14132167 P212912 Cdh3 Enhancer P212912 Enhancer Unique Tile chr8:109432948-109433894 (+) NM_001037809;NM_007665; + 32874 109400074 12560 Cdh3 AI385538|Cadp|P-cadherin|Pcad cadherin 3 MGI:88356 Mm.4658 8 8 D3|8 53.3 cM CDH3 1001 NM_177904 + 43315 109389633 330837 6030452D12Rik 0 GAAGGCATCTCTATTGGGGAACT CTAACAAATCACAGTGTCGCTGC 6 15 3 1.1.2.2.3.15 BCBC-5B-0 14132186 P213662 Bex2 Enhancer P213662 Enhancer Unique Tile chrX:131413312-131414039 (-) NM_009749 - 435 131414474 12069 Bex2 AL024066|Bex1 brain expressed X-linked 2 MGI:1338017 Mm.94160 X X F1|X 57.5 cM BEX2 84707 NM_001024141 - 17580 131431619 245610 Nxf3 0 CAGATTGACTGGAAACCGAGAGT GTTCTCCTCTCTCATCCTTCCCT 6 15 4 1.1.2.2.4.15 BCBC-5B-0 14132205 P214784 Ptpn9 Enhancer P214784 Enhancer Unique Tile chr9:56793987-56794814 (+) NM_019651 + 883 56793104 56294 Ptpn9 MEG2 protein tyrosine phosphatase, non-receptor type 9 MGI:1928376 Mm.325643 9 - PTPN9 5780 NM_178374 + 44927 56749060 66069 Snupn1 0 GGCTCTGAGATTCTTATGCTTCG ACTAGGGCGTGAGAGTGTGAAAC 6 15 5 1.1.2.2.5.15 BCBC-5B-0 14132224 P215624 Ssr3 Enhancer P215624 Enhancer Unique Tile chr3:65481883-65482840 (-) NM_026155 - 1394 65480489 67437 Ssr3 0610038P07Rik|AL022999|AU022074|AW553833|TRAPG signal sequence receptor, gamma MGI:1914687 Mm.232728 3 3 E1 SSR3 6747 0 CAGCTCTGCAGGGTAGATGTTCT GAGTGAGAGACTCCCAGACCTGA 6 15 6 1.1.2.2.6.15 BCBC-5B-0 14132243 P216374 Hemgn Enhancer P216374 Enhancer Unique Tile chr4:46428066-46429087 (-) NM_053149 - 2783 46425283 93966 Hemgn 4921524M03Rik|AI317176|EDAG|Hgn|mNDR hemogen MGI:2136910 Mm.25793 4 4 B1 HEMGN 55363 NM_029086 - 17542 46410524 74753 5830415F09Rik 1 CCAGCCTGGTCTACAGAGTGAGT CCCAAGGACACATCTTTATTGGA 6 15 7 1.1.2.2.7.15 BCBC-5B-0 14132262 P217496 Maml1 Enhancer P217496 Enhancer Unique Tile chr11:50113393-50114292 (-) NM_175334 - 3102 50110291 103806 Maml1 AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200 mastermind like 1 (Drosophila) MGI:1890504 Mm.51116 11 11 B1.3 MAML1 9794 NM_008521 - 31499 50081894 17001 Ltc4s 0 ACCTTGTAAAGAATGATGGGGGT TCATCATCTTTTGCTCCAAGTGA 6 15 8 1.1.2.2.8.15 BCBC-5B-0 14132281 P218164 Dapk2 ProximalPromoter P218164 ProximalPromoter Unique Tile chr9:65955163-65956062 (+) NM_010019 + 210 65956272 13143 Dapk2 - death-associated kinase 2 MGI:1341297 Mm.335252 9 9 C|9 32.0 cM DAPK2 23604 NM_026635 + 30464 65924699 68250 5730536A07Rik 0 AACGGGCTCACAGTTAGAAGGTA CCACCTGGAACGAATCAACTT 6 15 9 1.1.2.2.9.15 BCBC-5B-0 14132300 P219004 Cyp2d26 Enhancer P219004 Enhancer Unique Tile chr15:82618919-82619889 (-) NM_029562 - 2111 82622000 76279 Cyp2d26 1300006E06Rik cytochrome P450, family 2, subfamily d, polypeptide 26 MGI:1923529 Mm.352895 15 15 E1 0 TGACTGGTCCAGGTAAACACTGA ACGGCCTGGATAGATAGGATCTC 6 15 10 1.1.2.2.10.15 BCBC-5B-0 14132319 P220126 Bsg ProximalPromoter P220126 ProximalPromoter Unique Tile chr10:79106707-79107623 (+) NM_009768 + 5 79107628 12215 Bsg AI115436|AI325119|CD147|EMMPRIN|HT-7 basigin MGI:88208 Mm.398073; Mm.726; Mm.398073; Mm.726; Mm.398073; Mm.726; Mm.398073; Mm.726; Mm.398073; Mm.726; Mm.398073; Mm.726; Mm.398073; Mm.726; Mm.398073; Mm.726; Mm.398073; Mm.726; Mm.398073; Mm.726; Mm.398073; Mm.726; Mm.398073; Mm.726; Mm.398073; Mm.726; Mm.398073; Mm.726; Mm.398073; Mm.726; Mm.398073; Mm.726; Mm.398073; Mm.726; Mm.398073; Mm.726; Mm.398073; Mm.726; Mm.398073; Mm.726; Mm.398073; Mm.726; Mm.398073; Mm.726; Mm.398073; Mm.726 10 10 C1|10 42.4 cM BSG 682 NM_008226 + 12139 79119762 15166 Hcn2 1 CCGAAGCGAGCACAAATAAATAC CACTGCGGCTCTATAAGAAGGG 6 15 11 1.1.2.2.11.15 BCBC-5B-0 14132338 P220876 Eif3s6 ProximalPromoter P220876 ProximalPromoter Unique Tile chr15:43112685-43113676 (-) NM_008388 - 86 43112771 16341 Eif3s6 48kDa|Int6|eIF3-p46|eIF3-p48|eIF3e eukaryotic translation initiation factor 3, subunit 6 MGI:99257 Mm.289992 15 15 B3.2|15 17.1 cM EIF3S6 3646 0 ATTCCAAAAATGTCTGTCTCCCA CAGAGAGAAACTCAAGAAGCGGA 6 15 12 1.1.2.2.12.15 BCBC-5B-0 14132357 P221998 ProximalPromoter P221998 ProximalPromoter Unique Tile chr5:90101809-90102708 (+) 0 TGGGTTGACTGTGAATTTGTTTG GGACAACTCAAAGCCTCTCTCTG 6 15 13 1.1.2.2.13.15 BCBC-5B-0 14132376 P222838 Cetn2 Enhancer P222838 Enhancer Unique Tile chrX:69168883-69169807 (+) NM_019405 - 231 69169576 26370 Cetn2 1110034A02Rik|AI326150|Calt|caltractin centrin 2 MGI:1347085 Mm.24643 X X B|X 28.85 cM CETN2 1069 NM_010941 + 1433 69171240 18194 Nsdhl 0 TGGAAGGGATAGATTTTGTTGGA CATCGTTTCCCTTTTCATCTTTG 6 15 14 1.1.2.2.14.15 BCBC-5B-0 14132395 P223588 1110058L19Rik Enhancer P223588 Enhancer Unique Tile chr1:23963722-23964636 (-) NM_026503 - 3807 23959915 68002 1110058L19Rik 1700001E18Rik|AI847425|C6orf57 RIKEN cDNA 1110058L19 gene MGI:1915252 Mm.250424 1 1 A5 C6orf57 135154 0 CTGTCAAAGAATGGATGGAAAGG CTTGGGAAGGACTAGGATGTGTG 6 15 15 1.1.2.2.15.15 BCBC-5B-0 14132414 P224710 Cyp2j11 ProximalPromoter P224710 ProximalPromoter Unique Tile chr4:95840685-95841757 (-) NM_001004141 - 23 95840662 100066 Cyp2j11 AI314783|MGC91118 cytochrome P450, family 2, subfamily j, polypeptide 11 MGI:2140224 Mm.26915 4 4 C5 0 GGTTATTGCAGCAGCCTTTTATG CAGAAGGGTTTGTTCTGTTTTGG 6 15 16 1.1.2.2.16.15 BCBC-5B-0 14132433 P225460 4930481M05 ProximalPromoter P225460 ProximalPromoter Inter Repeats Tile chrX:130718697-130719603 (+) NM_183320 + 44 130719647 331529 4930481M05 - hypothetical protein 4930481M05 Mm.271555; Mm.336240; Mm.424967; Mm.271555; Mm.336240; Mm.424967; Mm.271555; Mm.336240; Mm.424967 X X E3-F1 0 GAAGGGCCTCTAACTCAGTTGCT CAGCTGACTTGTCTCCAGATCCT 6 15 17 1.1.2.2.17.15 BCBC-5B-0 14132452 P226022 Syt13 Pdx1 P226022 Pdx1 Unique Tile chr2:92748636-92749535 (+) NM_030725 + 32687 92715949 80976 Syt13 5730409J20Rik|AI549909|mKIAA1427 synaptotagmin XIII MGI:1933945 Mm.33490 2 2 E1 SYT13 57586 0 TATGTGGAGTCACACACAGGGTC ATCAGAGTGACACAGCTGTCCTG 6 15 18 1.1.2.2.18.15 BCBC-5B-0 14132471 P226952 Twsg1 Pdx1 P226952 Pdx1 Unique Tile chr17:65843190-65844113 (+) NM_023053 - 6560 65850673 65960 Twsg1 1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg twisted gastrulation homolog 1 (Drosophila) MGI:2137520 Mm.10153 17 17 E1.1|17 38.0 cM TWSG1 57045 0 AACCTGGGTTTCACTCCTAGACC GCTGGGTGTACAGCTTAGCAAAA 6 15 19 1.1.2.2.19.15 BCBC-5B-0 14132490 P002374 Stratagene PCR 4 P002374 Spike Control Negative Stratagene PCR 4 6 15 20 1.1.2.2.20.15 BCBC-5B-0 14132130 P211016 PufferfishHuman P211016 PufferfishHuman Unique Tile chr8:83210136-83211183 (-) 2 TACTTTCTCTCTCCACACCAGGC AATCACTTGACACAGGGGACATT 6 16 1 1.1.2.2.1.16 BCBC-5B-0 14132149 P211766 PufferfishHuman P211766 PufferfishHuman Unique Tile chr6:15046152-15047112 (+) 0 ACCACTAACTGATGAGTCCTGCC TCAGGAACAGTGCTTCAGACAAA 6 16 2 1.1.2.2.2.16 BCBC-5B-0 14132168 P212888 Casp7 Enhancer P212888 Enhancer Unique Tile chr19:56451978-56452948 (+) NM_007611 + 1457 56450521 12369 Casp7 AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7 caspase 7 MGI:109383 Mm.35687 19 19 D2|19 50.0 cM CASP7 840 NM_008733;NM_198059; - 8693 56443285 18175 Nrap 0 AAGTGATTGCAAGTAGGAGCAGC TGCTAACAGAAAGCTGACACAGG 6 16 3 1.1.2.2.3.16 BCBC-5B-0 14132187 P213638 Arsb Enhancer P213638 Enhancer Unique Tile chr13:94868337-94869314 (+) NM_009712 + 3197 94872511 11881 Arsb As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1 arylsulfatase B MGI:88075 Mm.300178; Mm.427946; Mm.300178; Mm.427946; Mm.300178; Mm.427946; Mm.300178; Mm.427946; Mm.300178; Mm.427946; Mm.300178; Mm.427946; Mm.300178; Mm.427946; Mm.300178; Mm.427946; Mm.300178; Mm.427946; Mm.300178; Mm.427946; Mm.300178; Mm.427946; Mm.300178; Mm.427946; Mm.300178; Mm.427946; Mm.300178; Mm.427946; Mm.300178; Mm.427946; Mm.300178; Mm.427946; Mm.300178; Mm.427946 13 13 C3-D1|13 50.0 cM ARSB 411 1 AAGAGGCAATGGCTACACAAGAG GGGGGACTAGAGTGGAGGAGTAA 6 16 4 1.1.2.2.4.16 BCBC-5B-0 14132206 P214478 Prmt5 Enhancer P214478 Enhancer Unique Tile chr14:53470374-53471360 (-) NM_013768 - 252 53471612 27374 Prmt5 Jbp1|Skb1 protein arginine N-methyltransferase 5 MGI:1351645 Mm.196585 14 - PRMT5 10419 NM_145462 - 37181 53508541 219072 D14Ertd500e 0 GACACCATTACTCCTTGAGTGGG TCCCACAATTAGCGTATTCCAGT 6 16 5 1.1.2.2.5.16 BCBC-5B-0 14132225 P215600 Slc25a19 Enhancer P215600 Enhancer Unique Tile chr11:115446477-115447531 (-) NM_026071 - 2242 115444235 67283 Slc25a19 2900089E13Rik|DNC|MUP1 solute carrier family 25 (mitochondrial deoxynucleotide carrier), member 19 MGI:1914533 Mm.383426 11 11 E2 SLC25A19 60386 NM_027162 - 17458 115429019 69674 Mif4gd 0 GGCTGACAGGGTTTTTGACATAC GGCCTCTCAGGGTTATCTTGTTT 6 16 6 1.1.2.2.6.16 BCBC-5B-0 14132244 P216350 Pard3 Enhancer P216350 Enhancer Unique Tile chr8:129950504-129951515 (+) NM_001013581;NM_001013580;NM_033620; + 170 129950334 93742 Pard3 AA960621|AI256638|ASIP|D8Ertd580e|PAR-3|Par3 par-3 (partitioning defective 3) homolog (C. elegans) MGI:2135608 Mm.299254 8 8 E2 PARD3 56288 1 ATGAAAGTTTTCAGCCTCATCCA TCTCGCTTGTTCTGAAGTCACAG 6 16 7 1.1.2.2.7.16 BCBC-5B-0 14132263 P217472 Tmem161b Enhancer P217472 Enhancer Unique Tile chr13:84695589-84696635 (+) NM_175187 + 132 84695457 72745 Tmem161b 2810446P07Rik|AI843389 transmembrane protein 161B MGI:1919995 Mm.295063 13 13 C3 TMEM161B 153396 0 ACAGGGAGGTCAGTCTGTGAAAG AAAAAGGCAGCAGCATAGTCAAC 6 16 8 1.1.2.2.8.16 BCBC-5B-0 14132282 P218230 4632417N05Rik Enhancer P218230 Enhancer Unique Tile chr8:120559361-120560267 (-) NM_028725 - 252 120559613 74032 4632417N05Rik AI117603 RIKEN cDNA 4632417N05 gene MGI:1921282 Mm.296302 8 8 E1 HSPC105 93517 NM_008290 + 27676 120587943 15486 Hsd17b2 0 TTTAAAGAAACGTGGAGAGCGAC TCAGCTGTCATTTGTGACCCTTA 6 16 9 1.1.2.2.9.16 BCBC-5B-0 14132301 P218980 1700016K19Rik ProximalPromoter P218980 ProximalPromoter Unique Tile chr11:75783330-75784353 (-) NM_198637 + 31814 75816167 74230 1700016K19Rik - RIKEN cDNA 1700016K19 gene MGI:1921480 Mm.271247 11 11 B5 0 GAGATCTGAGGATGAGGGGAAAT TGGCCCCACTTTAGCTACACTTA 6 16 10 1.1.2.2.10.16 BCBC-5B-0 14132320 P220102 Krtap6-1 ProximalPromoter P220102 ProximalPromoter Unique Tile chr16:88919628-88920576 (+) NM_010672 + 19 88920557 16700 Krtap6-1 1110025L11Rik|HGTpII.1|HGTpII.2 keratin associated protein 6-1 Mm.423181; Mm.6973; Mm.423181; Mm.6973; Mm.423181; Mm.6973; Mm.423181; Mm.6973; Mm.423181; Mm.6973 16 16 C3.3 NM_130872 - 16052 88936628 170653 Krtap16-3 0 AACTACCCTGGCTTTTGTGTGAA GGTTCTGGTTGTTGAGGTTGTTC 6 16 11 1.1.2.2.11.16 BCBC-5B-0 14132339 P220852 Cttn Enhancer P220852 Enhancer Unique Tile chr7:144278587-144279513 (-) NM_007803 - 605 144280118 13043 Cttn 1110020L01Rik|Ems1 cortactin MGI:99695 Mm.205601 7 7 F5 CTTN 2017 0 CATTTGTGGAGTAGCTAGGGGTG TGGTGACAACCTTCTCAGTCAAA 6 16 12 1.1.2.2.12.16 BCBC-5B-0 14132358 P221692 Hsd17b4 Enhancer P221692 Enhancer Unique Tile chr18:50253896-50254832 (+) NM_008292 + 228 50253668 15488 Hsd17b4 17[b]-HSD|AW208803|MFE-2|MFP2|Mfp-2|perMFE-2 hydroxysteroid (17-beta) dehydrogenase 4 MGI:105089 Mm.277857 18 18 D1 HSD17B4 3295 0 AGCTTATAAGGCCCACGTCTTTC TCTATGACACTGGCAAGGAGTGA 6 16 13 1.1.2.2.13.16 BCBC-5B-0 14132377 P222814 Ccdc44 ProximalPromoter P222814 ProximalPromoter Unique Tile chr11:105881109-105882008 (+) NM_027346 + 188 105882196 70207 Ccdc44 2310066I18Rik coiled-coil domain containing 44 MGI:1917457 Mm.343857 11 11 E1 CCDC44 51204 NM_011947 + 18990 105900998 26406 Map3k3 0 CGCTCTTGAGACTTAATTCACCC CTTGGAAACGACAGATCACCTTC 6 16 14 1.1.2.2.14.16 BCBC-5B-0 14132396 P223564 1110020L19Rik Enhancer P223564 Enhancer unhandled condition Tile chrX:69713166-69714083 (-) NM_028633;NM_207104; - 1417 69711749 73738 1110020L19Rik Uip1 RIKEN cDNA 1110020L19 gene MGI:1920988 Mm.264899 X X A7.3 NM_007542 + 22280 69736363 12111 Bgn 2 CAGGACTGAATAAACGTGTGCAG ACACACACACACACACACACACA 6 16 15 1.1.2.2.15.16 BCBC-5B-0 14132415 P224686 5033414K04Rik ProximalPromoter P224686 ProximalPromoter Unique Tile chr1:84163806-84164608 (-) NM_001003948 - 190 84163616 98496 5033414K04Rik MGC90850 RIKEN cDNA 5033414K04 gene MGI:2138391 Mm.187470 1 1 C5 FLJ20701 55022 0 TTCCTGTGACATATCCTTGGTCA AAACCCTGGAGAGGCTAGAAGC 6 16 16 1.1.2.2.16.16 BCBC-5B-0 14132434 P225526 Cpa2 ProximalPromoter P225526 ProximalPromoter Unique Tile chr6:30490717-30491665 (+) NM_001024698 + 14 30491651 232680 Cpa2 MGC107514 carboxypeptidase A2, pancreatic MGI:3617840 Mm.268855 6 6 A3.3 CPA2 1358 NM_027926 + 26713 30518378 71791 Cpa4 2 GGTACTGGGGGTTCAAAGCTAGT TTTTCCCAGAGTCCAGAGTTCAG 6 16 17 1.1.2.2.17.16 BCBC-5B-0 14132453 P225998 Eif3s7 Pdx1 P225998 Pdx1 Unique Tile chr15:77827998-77828897 (+) NM_018749 - 29983 77798015 55944 Eif3s7 66/67kDa|AA407891|MGC115774|eIF3p66 eukaryotic translation initiation factor 3, subunit 7 (zeta) MGI:1933181 Mm.3955; Mm.421308; Mm.3955; Mm.421308; Mm.3955; Mm.421308; Mm.3955; Mm.421308; Mm.3955; Mm.421308; Mm.3955; Mm.421308; Mm.3955; Mm.421308; Mm.3955; Mm.421308; Mm.3955; Mm.421308; Mm.3955; Mm.421308; Mm.3955; Mm.421308; Mm.3955; Mm.421308; Mm.3955; Mm.421308; Mm.3955; Mm.421308; Mm.3955; Mm.421308 15 15 E1 EIF3S7 8664 NM_001017983 - 44091 77783907 239554 Foxred2 0 GGGGATGAGGACATCTTCTTG GGCCTGCAATCTTGCTTGACT 6 16 18 1.1.2.2.18.16 BCBC-5B-0 14132472 P226928 Pdx1 P226928 Pdx1 Unique Tile chr17:49449487-49450409 (+) 0 CCTGTGTTTTCCTGTAGCCCATA TGGCTGCTAAGACAATCAGGTAA 6 16 19 1.1.2.2.19.16 BCBC-5B-0 14132491 P002350 Stratagene PCR 2 P002350 Spike Control Negative Stratagene PCR 2 6 16 20 1.1.2.2.20.16 BCBC-5B-0 14132131 P210992 PufferfishHuman P210992 PufferfishHuman Unique Tile chr2:57190404-57191369 (-) 0 AAAGGAACTCCGAAAACTCCAAC AGGTGTAGGGGACATTTGTGCTA 6 17 1 1.1.2.2.1.17 BCBC-5B-0 14132150 P211742 Gbx2 PufferfishHuman P211742 PufferfishHuman Unique Tile chr1:91772186-91773199 (-) NM_010262 - 9839 91762347 14472 Gbx2 D130058E05Rik|Gbx-2|MMoxA|Stra7 gastrulation brain homeobox 2 MGI:95668 Mm.204730; Mm.411396; Mm.204730; Mm.411396; Mm.204730; Mm.411396; Mm.204730; Mm.411396; Mm.204730; Mm.411396; Mm.204730; Mm.411396; Mm.204730; Mm.411396; Mm.204730; Mm.411396; Mm.204730; Mm.411396; Mm.204730; Mm.411396 1 1 C5-E1|1 65.0 cM GBX2 2637 0 ACACTGTGATGAGAGTGGCTGAG CTTTGGGGCCTATTCTTTCTCTG 6 17 2 1.1.2.2.2.17 BCBC-5B-0 14132169 P212864 Blm Enhancer P212864 Enhancer Unique Tile chr7:80407209-80408111 (-) NM_007550;NM_001042527; - 390 80408501 12144 Blm - Bloom syndrome homolog (human) MGI:1328362 Mm.12932 7 7 D2-D3|7 40.0 cM BLM 641 0 CTCCCAGTCCCTCTTAACTGTCA CCTGGGAGGCTTGCTAGTTTAAT 6 17 3 1.1.2.2.3.17 BCBC-5B-0 14132188 P213704 Cd44 Enhancer P213704 Enhancer Unique Tile chr2:102705851-102706841 (-) NM_001039151;NM_001039150;NM_009851; - 3347 102702504 12505 Cd44 AW121933|AW146109|HERMES|Ly-24|Pgp-1 CD44 antigen MGI:88338 Mm.330428 2 2 E2|2 56.0 cM CD44 960 0 AAGTGATTGCTCTCTCCACCAAG GCATGACATGGTGTGTCAGTTTT 6 17 4 1.1.2.2.4.17 BCBC-5B-0 14132207 P214454 Syn1 Enhancer P214454 Enhancer Unique Tile chrX:20081823-20082764 (-) NM_013680 - 3968 20077855 20964 Syn1 Syn-1|Synapsin Ia|Synapsin Ib synapsin I MGI:98460 Mm.3064; Mm.391224; Mm.3064; Mm.391224 X X A1-A4|X 6.2 cM SYN1 6853 NM_008823 - 5701 20088465 18636 Cfp 0 TGTCTTACCTGAGCTGCTCTCCT AGTCTGCTCACTGGCTCTCAGAT 6 17 5 1.1.2.2.5.17 BCBC-5B-0 14132226 P215576 Zmynd19 Enhancer P215576 Enhancer Unique Tile chr2:24772008-24772949 (+) NM_026021 + 164 24771844 67187 Zmynd19 2700064H14Rik|AA536891|AU014915|mizip zinc finger, MYND domain containing 19 MGI:1914437 Mm.296106; Mm.394712; Mm.296106; Mm.394712; Mm.296106; Mm.394712; Mm.296106; Mm.394712; Mm.296106; Mm.394712; Mm.296106; Mm.394712; Mm.296106; Mm.394712; Mm.296106; Mm.394712; Mm.296106; Mm.394712 2 2 A3 ZMYND19 116225 NM_026044 + 11482 24784431 67228 Wdr85 1 GACCGACTTTAAATTGGGCATC ACCCTGACAAGTGGTATCCAGAA 6 17 6 1.1.2.2.6.17 BCBC-5B-0 14132245 P216326 Zfp423 Enhancer P216326 Enhancer Unique Tile chr8:90851581-90852508 (-) NM_033327 - 1881 90849700 94187 Zfp423 Ebfaz|Roaz|Zfp104|mKIAA0760 zinc finger protein 423 MGI:1891217 Mm.23452; Mm.428606; Mm.23452; Mm.428606; Mm.23452; Mm.428606; Mm.23452; Mm.428606; Mm.23452; Mm.428606; Mm.23452; Mm.428606; Mm.23452; Mm.428606; Mm.23452; Mm.428606; Mm.23452; Mm.428606; Mm.23452; Mm.428606; Mm.23452; Mm.428606; Mm.23452; Mm.428606 8 8 C4 ZNF423 23090 2 GTCTCAGTGCCCTAGAGAGCCA AGATCGATAAGTTGCCACTGGAG 6 17 7 1.1.2.2.7.17 BCBC-5B-0 14132264 P217166 Aldh1l2 Enhancer P217166 Enhancer Unique Tile chr10:82962667-82963630 (-) NM_153543 - 231 82963861 216188 Aldh1l2 D330038I09Rik|MGC19039 aldehyde dehydrogenase 1 family, member L2 MGI:2444680 Mm.263138 10 10 C1 ALDH1L2 160428 0 ACTGGAAGACTCCAGAGAAGCCT AAACCCCAGCATGGAAATCTTAT 6 17 8 1.1.2.2.8.17 BCBC-5B-0 14132283 P218206 Homez ProximalPromoter P218206 ProximalPromoter Unique Tile chr14:53818516-53819428 (-) NM_183174 - 3821 53814695 239099 Homez mKIAA1443 homeodomain leucine zipper-encoding gene MGI:2678023 Mm.280994 14 14 C2-C3 KIAA1443 57594 NM_007537 + 18201 53837629 12050 Bcl2l2 1 TTTCAGCCTCCATTTGAGTTCAT ATCCTGTGGTCCTTCCAAAGTTC 6 17 9 1.1.2.2.9.17 BCBC-5B-0 14132302 P218956 Cdc42ep1 ProximalPromoter P218956 ProximalPromoter Unique Tile chr15:78668928-78669986 (+) NM_027219 + 73 78669913 104445 Cdc42ep1 1810058K22Rik|AA980734|Borg5|CEP1|MGC103067|MSE55 CDC42 effector protein (Rho GTPase binding) 1 MGI:1929763 Mm.307488 15 15 E1 CDC42EP1 11135 NM_025622 - 12765 78682751 107753 Lgals2 1 AGGATCTGTCTTCTTGAGCATGG GATTACCTCGTGTCGTCGAGC 6 17 10 1.1.2.2.10.17 BCBC-5B-0 14132321 P220078 Olfr1508 ProximalPromoter P220078 ProximalPromoter Unique Tile chr14:51385941-51386889 (-) NM_020513 - 17 51385958 57270 Olfr1508 MOR244-2|MOR244-4|Mor10|Or10 olfactory receptor 1508 MGI:3031342 Mm.390724 14 14 C1 NM_020514 + 13576 51372365 57271 Olfr1509 0 AGCTGGGGATGATCTAGTCAGTG GAGGACAGCCTTTTCCATTCTTT 6 17 11 1.1.2.2.11.17 BCBC-5B-0 14132340 P220918 Bbs2 Enhancer P220918 Enhancer End Repeat Tile chr8:96986269-96987254 (-) NM_026116 - 345 96987599 67378 Bbs2 2410125H22Rik|AI447581 Bardet-Biedl syndrome 2 homolog (human) MGI:2135267 Mm.292107 8 8 C5 BBS2 583 NM_008631 + 39116 97026370 17752 Mt4 1 CCATCAAAGTGGGATTTCAAAGA TGTGTGTGTGTGTGTGTGTGTGT 6 17 12 1.1.2.2.12.17 BCBC-5B-0 14132359 P221668 Ets1 ProximalPromoter P221668 ProximalPromoter Unique Tile chr9:32444575-32445513 (+) NM_011808;NM_001038642; + 93 32445606 23871 Ets1 D230050P06|Ets-1|MGC130355|MGC18571|Tpl1 E26 avian leukemia oncogene 1, 5' domain MGI:95455 Mm.292415 9 9 A4|9 15.0 cM ETS1 2113 0 AATAGCTTTCCCTGAGGTTGCTC CTTAGCATCTGCAGCCAATCAC 6 17 13 1.1.2.2.13.17 BCBC-5B-0 14132378 P222790 Hdac4 ProximalPromoter P222790 ProximalPromoter Unique Tile chr1:94010893-94011807 (-) NM_207225 - 32094 93978799 208727 Hdac4 4932408F19Rik|AI047285 histone deacetylase 4 MGI:3036234 Mm.318567; Mm.386845; Mm.318567; Mm.386845; Mm.318567; Mm.386845; Mm.318567; Mm.386845; Mm.318567; Mm.386845; Mm.318567; Mm.386845; Mm.318567; Mm.386845; Mm.318567; Mm.386845; Mm.318567; Mm.386845; Mm.318567; Mm.386845; Mm.318567; Mm.386845 1 1 D HDAC4 9759 1 TTTACCTTCAATTTTCCCCCAGT ATTGGTCCGAGAGTCCTAAGTCC 6 17 14 1.1.2.2.14.17 BCBC-5B-0 14132397 P223540 Tm2d3 ProximalPromoter P223540 ProximalPromoter Unique Tile chr7:65569084-65570133 (+) NM_178056;NM_026795; + 15 65570118 68634 Tm2d3 1110025I09Rik|5930422O05Rik|Blp2 TM2 domain containing 3 MGI:1915884 Mm.35127 7 7 C TM2D3 80213 NM_172310 + 45221 65523863 272396 Tarsl2 0 CCATAGAAAGGAGGAATGTGGTG TTTTCGCCAACCACTGTAGAAAT 6 17 15 1.1.2.2.15.17 BCBC-5B-0 14132416 P224380 Gak ProximalPromoter P224380 ProximalPromoter Unique Tile chr5:108870051-108871089 (-) NM_153569 - 10 108870041 231580 Gak D130045N16Rik|MGC31204 cyclin G associated kinase MGI:2442153 Mm.276647 5 5 F GAK 2580 NM_028223 + 252 108870303 72392 3010001K23Rik 0 TTCACTCTTTCCCATTGGCTTTA GTAAATCAGAGAGCGAGTTGCGT 6 17 16 1.1.2.2.16.17 BCBC-5B-0 14132435 P225502 Olfr804 ProximalPromoter P225502 ProximalPromoter Unique Tile chr10:129106888-129107891 (+) NM_001011821 + 63 129107828 258068 Olfr804 MOR110-7 olfactory receptor 804 MGI:3030638 Mm.363074; Mm.377342 10 10 D3 NM_146554 - 11900 129094988 258547 Olfr803 0 TATGAGCATTGTGGGTAACAGGA CAACTGTGGGTCATCTGTCAATC 6 17 17 1.1.2.2.17.17 BCBC-5B-0 14132454 P225974 Hivep2 Pdx1 P225974 Pdx1 Unique Tile chr10:13622151-13623050 (+) NM_010437 + 33526 13656576 15273 Hivep2 MIBP1|Schnurri-2|Shn-2 human immunodeficiency virus type I enhancer binding protein 2 MGI:1338076 Mm.42157 10 - HIVEP2 3097 0 ATGCCTAGCAATAGACATTGTGA TGTCTAGAGTTCAGATCCTGGGC 6 17 18 1.1.2.2.18.17 BCBC-5B-0 14132473 P226904 Samhd1 Pdx1 P226904 Pdx1 Unique Tile chr2:156786558-156787479 (+) NM_018851 - 39107 156826586 56045 Samhd1 E330031J07Rik|Mg11 SAM domain and HD domain, 1 MGI:1927468 Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988; Mm.248478; Mm.406988 2 2 H2 SAMHD1 25939 0 ATAAGGGGTGAAGACCAAGGAAA CTCCATCATGGCTGTTCTCATC 6 17 19 1.1.2.2.19.17 BCBC-5B-0 14132492 P002416 Stratagene PCR 7 P002416 Spike Control Negative Stratagene PCR 7 6 17 20 1.1.2.2.20.17 BCBC-5B-0 14132132 P210968 PufferfishHuman P210968 PufferfishHuman Unique Tile chr2:46163024-46163986 (+) 0 AGATGCTTTAGACGCACGAAAAG CTTCTCAGAGTGGCAGCTCATTT 6 18 1 1.1.2.2.1.18 BCBC-5B-0 14132151 P211718 PufferfishHuman P211718 PufferfishHuman Unique Tile chr4:83335578-83336646 (-) 0 TTTGTGTGCTACAAGGCAGAAAA TAAAGGAGACGTTCGTGAACACA 6 18 2 1.1.2.2.2.18 BCBC-5B-0 14132170 P212558 miRNA P212558 miRNA Unique Tile chr1:20659518-20660537 (+) mmu-mir-206 0 TAGGTGTCAGAGTGCCTAGAGGG TCCAGTGAGAGACTTTTGGGAAG 6 18 3 1.1.2.2.3.18 BCBC-5B-0 14132189 P213680 Aspm Enhancer P213680 Enhancer Unique Tile chr1:141266993-141267906 (+) NM_009791 + 3277 141271183 12316 Aspm Calmbp1|D330028K02Rik|FLJ10518|MCPH5|Sha1 asp (abnormal spindle)-like, microcephaly associated (Drosophila) MGI:1334448 Mm.168523 1 1 F ASPM 259266 NM_172643 + 26747 141240246 226470 Zbtb41 0 GCTGACGTCCTTGGATACTGAAT AACATGTAAAAGGCTATTGCCCA 6 18 4 1.1.2.2.4.18 BCBC-5B-0 14132208 P214430 Pafah1b1 Enhancer P214430 Enhancer Unique Tile chr11:74539101-74540050 (-) NM_013625 - 468 74540518 18472 Pafah1b1 LIS-1|Lis1|MGC25297|MMS10-U|Mdsh|Ms10u|Pafaha platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit Mm.56337 11 11 B3|11 44.0 cM NM_026197 + 47007 74587057 67493 Mett10d 1 CTTCTTCTTCTCCTCTCCTCGCT GTGAGGAGGAGGTATCCTTGACA 6 18 5 1.1.2.2.5.18 BCBC-5B-0 14132227 P215552 Rpl14 Enhancer P215552 Enhancer Unique Tile chr9:120415149-120416119 (+) NM_025974 + 4094 120420213 67115 Rpl14 3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14 ribosomal protein L14 MGI:1914365 Mm.289810 9 9 F4 RPL14 9045 NM_178676 + 26605 120388544 215446 Entpd3 0 GTGCCTGGCATTTCTTCTGTATC AGTAGCAACCTCATGACCAGAGC 6 18 6 1.1.2.2.6.18 BCBC-5B-0 14132246 P216392 Selm Enhancer P216392 Enhancer Unique Tile chr11:3417920-3418872 (+) NM_053267 + 2884 3415036 114679 Selm 1500040L08Rik|A230103K18|Sepm selenoprotein M MGI:2149786 Mm.34046 11 - SELM 140606 NM_172439 - 13096 3404824 170835 Pib5pa 0 CTGCTCGTCTTTTCACAAACTCC AGAGCCAGGATGGTAACTCAGTG 6 18 7 1.1.2.2.7.18 BCBC-5B-0 14132265 P217142 Wdr32 Enhancer P217142 Enhancer Unique Tile chr4:45366936-45367963 (+) NM_153167 + 3593 45363343 242418 Wdr32 AA959934|MGC103038|MGC11993 WD repeat domain 32 MGI:2140179 Mm.317668; Mm.392254; Mm.317668; Mm.392254; Mm.317668; Mm.392254; Mm.317668; Mm.392254; Mm.317668; Mm.392254; Mm.317668; Mm.392254; Mm.317668; Mm.392254; Mm.317668; Mm.392254; Mm.317668; Mm.392254; Mm.317668; Mm.392254; Mm.317668; Mm.392254; Mm.317668; Mm.392254; Mm.317668; Mm.392254 4 4 B1 WDR32 79269 NM_025513 - 25237 45341699 66362 Exosc3 0 ATTCAGGATGAAAAGGGGAACAT GTCTTGAAGTCTCAGCTTCCCAA 6 18 8 1.1.2.2.8.18 BCBC-5B-0 14132284 P218182 9030607L17Rik Enhancer P218182 Enhancer Unique Tile chr10:80105572-80106639 (+) NM_027829 + 249 80105821 71564 9030607L17Rik AI550407 RIKEN cDNA 9030607L17 gene MGI:1918814 Mm.35802 10 10 C1 NM_212436 - 6716 80113355 257958 Olfr301 2 CTCACTTTGTAGACCAGGTTGGC AGTTGCAGTGAAAGATGGGGATA 6 18 9 1.1.2.2.9.18 BCBC-5B-0 14132303 P218932 Ehhadh ProximalPromoter P218932 ProximalPromoter Unique Tile chr16:21701743-21702766 (-) NM_023737 - 36 21701779 74147 Ehhadh 1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase MGI:1277964 Mm.28100 16 16 B1 EHHADH 1962 0 AGTGATAGGAGGCTTTGCTGTTG CAGCCTCAGATACTCAGCCATTT 6 18 10 1.1.2.2.10.18 BCBC-5B-0 14132322 P219772 6330407J23Rik ProximalPromoter P219772 ProximalPromoter Unique Tile chr10:28832529-28833450 (+) NM_026138 + 196 28833254 67412 6330407J23Rik - RIKEN cDNA 6330407J23 gene MGI:1914662 Mm.390264 10 10 A4 KIAA0408 9729 0 ACCTGCAAACTTACAAGGGGATT GGAGAGAAGTAACCGGAGTGGTT 6 18 11 1.1.2.2.11.18 BCBC-5B-0 14132341 P220894 Dicer1 ProximalPromoter P220894 ProximalPromoter Unique Tile chr12:105152936-105153898 (-) NM_148948 - 66 105153002 192119 Dicer1 1110006F08Rik|D12Ertd7e|mKIAA0928 Dicer1, Dcr-1 homolog (Drosophila) MGI:2177178 Mm.21135; Mm.390512; Mm.21135; Mm.390512; Mm.21135; Mm.390512; Mm.21135; Mm.390512; Mm.21135; Mm.390512; Mm.21135; Mm.390512; Mm.21135; Mm.390512; Mm.21135; Mm.390512; Mm.21135; Mm.390512; Mm.21135; Mm.390512; Mm.21135; Mm.390512; Mm.21135; Mm.390512; Mm.21135; Mm.390512; Mm.21135; Mm.390512 12 12 E-F1|12 51.0 cM DICER1 23405 1 GAGTTTGAGGACAGCCTGGTCTA CGCTGTCAGGTTACTCCATTCAC 6 18 12 1.1.2.2.12.18 BCBC-5B-0 14132360 P221644 ProximalPromoter P221644 ProximalPromoter No Hits Tile 0 caggatgtgagggagagaaagaa ggagaaactctgggtcatttcct 6 18 13 1.1.2.2.13.18 BCBC-5B-0 14132379 P222766 Zfp354b Enhancer P222766 Enhancer Unique Tile chr11:50771550-50772634 (-) NM_013744 - 1742 50774376 27274 Zfp354b Kid2|MGC130408|MGC130409|Tcf17l1 zinc finger protein 354B MGI:1351476 Mm.74670 11 11 B1.3 ZNF354B 117608 NM_178447;NM_009550; - 11962 50759588 22678 Zfp2 0 AAATGCCCCAAATAGGAGAACAT AAGCCAGTTCTTCTAACCCCAAG 6 18 14 1.1.2.2.14.18 BCBC-5B-0 14132398 P223606 Ern1 Enhancer P223606 Enhancer Unique Tile chr11:106302710-106303708 (-) NM_023913 - 178 106303886 78943 Ern1 9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p endoplasmic reticulum (ER) to nucleus signalling 1 MGI:1930134 Mm.340943 11 11 E1 ERN1 2081 2 GGGTGAGTAACCAGGGGAGTG CTCCACACATGTCAGTCTTCCAC 6 18 15 1.1.2.2.15.18 BCBC-5B-0 14132417 P224356 Cbx4 ProximalPromoter P224356 ProximalPromoter Unique Tile chr11:118902348-118903321 (-) NM_007625 - 119 118902229 12418 Cbx4 MGC143697|MGC143698|MPc2 chromobox homolog 4 (Drosophila Pc class) MGI:1195985 Mm.268070 11 11 E2|11 79.5 cM CBX4 8535 NM_013926 - 45345 118857003 30951 Cbx8 1 CTTGGTCCTCCCCACTCTTACTT GGCACGAGAACTCATGCAAAT 6 18 16 1.1.2.2.16.18 BCBC-5B-0 14132436 P225478 ProximalPromoter P225478 ProximalPromoter Duplication Tile chr17:13146112-13147088 (+) 0 TATCCCTGCTTCTGGACACTCTC GCCAGTCACTTCACCTAGCCTAA 6 18 17 1.1.2.2.17.18 BCBC-5B-0 14132455 P225950 Abhd3 Pdx1 P225950 Pdx1 Unique Tile chr18:10706839-10707691 (+) NM_134130 - 145 10706694 106861 Abhd3 AA675331|LABH3 abhydrolase domain containing 3 MGI:2147183 Mm.273108 18 18 A1 ABHD3 171586 NM_144860 + 17931 10725622 225164 Mib1 2 CCCTACCTGAGAACCTTCCAGAC ACACACACACACACACACAGAGG 6 18 18 1.1.2.2.18.18 BCBC-5B-0 14132474 P226406 LOC434197 Pdx1 P226406 Pdx1 Unique Tile chr7:68146691-68147597 (+) NM_001013811 + 246 68147351 434197 LOC434197 - similar to hypothetical protein FLJ39743 Mm.216193 7 7 C 0 TGAATCTTGTCCATTTCTGGGAT ATTCCCTCTGCCTTGCTAAAAAC 6 18 19 1.1.2.2.19.18 BCBC-5B-0 14132493 P002392 Stratagene PCR 5 P002392 Spike Control Negative Stratagene PCR 5 6 18 20 1.1.2.2.20.18 BCBC-5B-0 14132133 P210944 PufferfishHuman P210944 PufferfishHuman Unique Tile chr8:94554634-94555658 (+) 0 TTATCACAGGCCTTTAATCTGCC TGGGGTAACATCCTCACATCTCT 6 19 1 1.1.2.2.1.19 BCBC-5B-0 14132152 P211784 PufferfishHuman P211784 PufferfishHuman Unique Tile chr13:80055735-80056752 (-) 0 GTGCCTTCTCTTCCTCAAACAAA GTCATTTTGCCTTTCACCACTTC 6 19 2 1.1.2.2.2.19 BCBC-5B-0 14132171 P212534 miRNA P212534 miRNA Unique Tile chrX:64253581-64254616 (-) mmu-mir-201 0 CTATATTTTCCCCAGGAACAGGG TGCCAGACAAGGAACTGGTAAAT 6 19 3 1.1.2.2.3.19 BCBC-5B-0 14132190 P213656 Bcl2 Enhancer P213656 Enhancer Unique Tile chr1:108544077-108545163 (-) NM_009741;NM_177410; - 2228 108541849 12043 Bcl2 AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik B-cell leukemia/lymphoma 2 MGI:88138 Mm.257460 1 1 E2.1|1 59.8 cM BCL2 596 NM_027534 - 42035 108587198 70750 Fvt1 0 AAGGGTCTTTTCCCTCATTTCAG ATTTCCAGAGTGCCAGGATCATA 6 19 4 1.1.2.2.4.19 BCBC-5B-0 14132209 P214406 Grcc10 Enhancer P214406 Enhancer Unique Tile chr6:124710501-124711484 (-) NM_013535 - 3803 124706698 14790 Grcc10 2310033H05Rik|C10 gene rich cluster, C10 gene MGI:1315201 Mm.333380 6 6 F2|6 60.22 cM C12orf57 113246 NM_007881 - 10138 124721622 13498 Atn1 0 GCAGGTTCAATAAGCACTTGGAC CATAAGACATGTCAGGACGCAAG 6 19 5 1.1.2.2.5.19 BCBC-5B-0 14132228 P215246 Tomm20 Enhancer P215246 Enhancer Unique Tile chr8:129830604-129831535 (-) NM_024214 - 383 129831918 67952 Tomm20 1810060K07Rik|BB284719|MAS20|MGC117642|MGC6333|MOM19|TOM20|mKIAA0016 translocase of outer mitochondrial membrane 20 homolog (yeast) MGI:1915202 Mm.372086; Mm.380026; Mm.391013; Mm.427675; Mm.6932; Mm.372086; Mm.380026; Mm.391013; Mm.427675; Mm.6932; Mm.372086; Mm.380026; Mm.391013; Mm.427675; Mm.6932; Mm.372086; Mm.380026; Mm.391013; Mm.427675; Mm.6932; Mm.372086; Mm.380026; Mm.391013; Mm.427675; Mm.6932; Mm.372086; Mm.380026; Mm.391013; Mm.427675; Mm.6932; Mm.372086; Mm.380026; Mm.391013; Mm.427675; Mm.6932; Mm.372086; Mm.380026; Mm.391013; Mm.427675; Mm.6932; Mm.372086; Mm.380026; Mm.391013; Mm.427675; Mm.6932; Mm.372086; Mm.380026; Mm.391013; Mm.427675; Mm.6932; Mm.372086; Mm.380026; Mm.391013; Mm.427675; Mm.6932; Mm.372086; Mm.380026; Mm.391013; Mm.427675; Mm.6932; Mm.372086; Mm.380026; Mm.391013; Mm.427675; Mm.6932; Mm.372086; Mm.380026; Mm.391013; Mm.427675; Mm.6932; Mm.372086; Mm.380026; Mm.391013; Mm.427675; Mm.6932 8 8 E2 TOMM20 9804 NM_172762 - 25634 129857169 52202 Rbm34 0 CCTTTCCCCAGCTCTGTAATTCT CGTGAAGAAAACGATGAGGCTAC 6 19 6 1.1.2.2.6.19 BCBC-5B-0 14132247 P216368 Echs1 Enhancer P216368 Enhancer Unique Tile chr7:139966582-139967567 (-) NM_053119 - 176 139967743 93747 Echs1 C80529 enoyl Coenzyme A hydratase, short chain, 1, mitochondrial MGI:2136460 Mm.24452 7 7 F4 ECHS1 1892 NM_153783 + 9437 139977004 212503 Paox 0 ATAACCTCTGGGTGGTCCCTAAA AATACCCAAGGAGCTAAAGGTGC 6 19 7 1.1.2.2.7.19 BCBC-5B-0 14132266 P217118 Rbm17 Enhancer P217118 Enhancer Unique Tile chr2:11519872-11520907 (-) NM_152824 - 145 11521052 76938 Rbm17 2700027J02Rik RNA binding motif protein 17 MGI:1924188 Mm.182769 2 2 A1 RBM17 84991 NM_008367 + 39795 11560702 16184 Il2ra 1 GGTCTGATCCGGAACGTAGACT GGCTTGTCCTCGGAACTCTTAAT 6 19 8 1.1.2.2.8.19 BCBC-5B-0 14132285 P218158 Msi1 ProximalPromoter P218158 ProximalPromoter Unique Tile chr5:115689616-115690315 (+) NM_008629 + 368 115690683 17690 Msi1 Msi1h|Musahi1|m-Msi-1 Musashi homolog 1(Drosophila) MGI:107376 Mm.5077 5 - MSI1 4440 NM_011107 + 36949 115727264 18778 Pla2g1b 0 CCAGGTTCTTCCAAATCAAATGG GTTCAAGGTAGCTCGGCTTCG 6 19 9 1.1.2.2.9.19 BCBC-5B-0 14132304 P218998 Inpp5d Enhancer P218998 Enhancer Unique Tile chr1:89453867-89454881 (+) NM_010566 + 2261 89451606 16331 Inpp5d 145kDa|AI323613|MGC117680|SHIP|SHIP-1|s-SHIP inositol polyphosphate-5-phosphatase D MGI:107357 Mm.15105 1 1 C5|1 57.0 cM INPP5D 3635 NM_015750 + 28147 89425720 23956 Neu2 0 TGAAAAATTGTTAGAAGCCTGCC GAAGCATTGTCTTCTCTGCAACA 6 19 10 1.1.2.2.10.19 BCBC-5B-0 14132323 P219748 2410025L10Rik ProximalPromoter P219748 ProximalPromoter Unique Tile chr5:110627304-110628345 (-) NM_028596 - 94 110627398 381668 2410025L10Rik AI467568|Gm1049|mKIAA1545 RIKEN cDNA 2410025L10 gene MGI:1920907 Mm.348782 5 5 F KIAA1545 57666 NM_001033459 + 32907 110594397 381667 Gm1679 1 GCCAAACATAAGGAAAGAGCTGA CCATCCAGGGAGTCTCTTTCTG 6 19 11 1.1.2.2.11.19 BCBC-5B-0 14132342 P220870 Kctd19 ProximalPromoter P220870 ProximalPromoter Unique Tile chr8:108302583-108303513 (-) NM_177791 - 33 108302616 279499 Kctd19 4922504H04Rik|MGC107186 potassium channel tetramerisation domain containing 19 MGI:3045294 Mm.67628 8 8 D3 KCTD19 146212 NM_001033371 + 13255 108316768 270091 Lrrc36 0 AGGAATACTGAAGGCTTTCCCAG CATAGTCCTAAATTCCGTGGCAG 6 19 12 1.1.2.2.12.19 BCBC-5B-0 14132361 P221620 Olfr273 ProximalPromoter P221620 ProximalPromoter Unique Tile chr4:52877553-52878466 (-) NM_146824 - 58 52877611 258821 Olfr273 MOR262-8 olfactory receptor 273 MGI:3030107 Mm.297704 4 - OR13C3 138803 NM_146858 + 31055 52846498 258857 Olfr275 0 GCCAGCCTGTATAATATGGCAAA TATCCAGCAAGACCCAAAAGAAG 6 19 13 1.1.2.2.13.19 BCBC-5B-0 14132380 P222460 Tbx3 ProximalPromoter P222460 ProximalPromoter Unique Tile chr5:119931026-119932009 (+) NM_198052;NM_011535; + 531 119931478 21386 Tbx3 D5Ertd189e T-box 3 Mm.219139 5 5 F|5 65.0 cM 1 CTTATTGGCCGAAAGAGAGGTTC CAAAACTAGAACTGCGAAGCTGG 6 19 14 1.1.2.2.14.19 BCBC-5B-0 14132399 P223582 Icosl Enhancer P223582 Enhancer Unique Tile chr10:77472660-77473736 (+) NM_015790 + 164 77472496 50723 Icosl AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|KIAA0653|LICOS|Ly115l|mKIAA0653 icos ligand MGI:1354701 Mm.17819 10 10 C1 ICOSLG 23308 NM_019448 + 19559 77453101 54427 Dnmt3l 0 CTAAAGTGAGTCCGTTCGCTGTT AGCAGGTCACAGACACTTCACAG 6 19 15 1.1.2.2.15.19 BCBC-5B-0 14132418 P224332 C1ql2 ProximalPromoter P224332 ProximalPromoter Unique Tile chr1:122167107-122168186 (+) NM_207233 + 59 122168127 226359 C1ql2 BC040774|MGC49730 complement component 1, q subcomponent-like 2 MGI:3032521 Mm.337409 1 1 E2.3 C1QL2 165257 0 CCACATAGCAGCTCACAAATGTC TCTCCCTCTACTAGCTGGTTCCC 6 19 16 1.1.2.2.16.19 BCBC-5B-0 14132437 P225454 Cpne4 ProximalPromoter P225454 ProximalPromoter Unique Tile chr9:104426936-104427883 (+) NM_028719 + 4 104427887 74020 Cpne4 3632411M23Rik|4933406O10Rik copine IV MGI:1921270 Mm.326240 9 9 F1 CPNE4 131034 0 AGCAAAACATCAAACCCCCTATT TAAAGAGGAAGGAACTGGGGAAG 6 19 17 1.1.2.2.17.19 BCBC-5B-0 14132456 P226016 Pdx1 P226016 Pdx1 Unique Tile chr2:154412891-154413790 (+) 0 CAGAGAAACCATTGAACATGGC TGGCAAACTTAGTAAAATACGGC 6 19 18 1.1.2.2.18.19 BCBC-5B-0 14132475 P226382 Actn2 Pdx1 P226382 Pdx1 Unique Tile chr13:12399655-12400561 (+) NM_033268 - 4590 12395065 11472 Actn2 1110008F24Rik|MGC107582 actinin alpha 2 MGI:109192 Mm.37638 13 13 A1|13 7.0 cM ACTN2 88 NM_144835 + 49146 12449707 217995 Heatr1 2 CCACCCTGGTCTACAAAGTGAGT AAAAGACACTGGACAGGGCTTAG 6 19 19 1.1.2.2.19.19 BCBC-5B-0 14132494 P002368 Stratagene PCR 3 P002368 Spike Control Negative Stratagene PCR 3 6 19 20 1.1.2.2.20.19 BCBC-5B-0 14132495 P211940 PufferfishHuman P211940 PufferfishHuman Unique Tile chr13:78914561-78915588 (+) 0 ACAGCACATGTTTTCCAAAGTGA GACCCCAACGTATGGATTTACAA 7 1 1 1.1.2.3.1.1 BCBC-5B-0 14132514 P212690 miRNA P212690 miRNA Unique Tile chr4:120268018-120269013 (+) mmu-mir-30c-1 0 CTTCAAACCCACAGTTTCAGTCC TGAGTGTTAGCATGGAGCAGGTA 7 1 2 1.1.2.3.2.1 BCBC-5B-0 14132533 P213812 Fmo1 Enhancer P213812 Enhancer Unique Tile chr1:164700099-164701192 (-) NM_010231 - 2031 164703223 14261 Fmo1 - flavin containing monooxygenase 1 MGI:1310002 Mm.976 1 1 H1|1 92.6 cM FMO1 2326 NM_018881 - 34195 164735387 55990 Fmo2 0 TTCTGTCATTGATGTGGAGGAGA GTTGGTCGTATCTGTGGGTCTTC 7 1 3 1.1.2.3.3.1 BCBC-5B-0 14132552 P214652 Hmgn2 Enhancer P214652 Enhancer Unique Tile chr4:133238854-133239885 (-) NM_016957 - 34 133239919 15331 Hmgn2 HMG-17|Hmg17|MGC102472|MGC103137|MGC103384|MGC118420 high mobility group nucleosomal binding domain 2 MGI:96136 Mm.319660; Mm.911; Mm.319660; Mm.911; Mm.319660; Mm.911; Mm.319660; Mm.911; Mm.319660; Mm.911; Mm.319660; Mm.911; Mm.319660; Mm.911; Mm.319660; Mm.911; Mm.319660; Mm.911; Mm.319660; Mm.911; Mm.319660; Mm.911; Mm.319660; Mm.911; Mm.319660; Mm.911; Mm.319660; Mm.911; Mm.319660; Mm.911; Mm.319660; Mm.911; Mm.319660; Mm.911; Mm.319660; Mm.911; Mm.319660; Mm.911 4 4 D3|4 62.2 cM HMGN2 3151 NM_026144 - 33049 133272934 67422 Dhdds 0 ATGCCCAAAAGAAAGGTACGTG CGCAGATCTTCTCTGTGGCTATT 7 1 4 1.1.2.3.4.1 BCBC-5B-0 14132571 P215402 Magmas Enhancer P215402 Enhancer Unique Tile chr16:4542955-4543914 (-) NM_025571 - 2781 4540174 66449 Magmas 2010110I09Rik|AV006767|CGI-136 mitochondria-associated protein involved in granulocyte-macrophage colony-stimulating factor signal transduction MGI:1913699 Mm.354760 16 16 A1|16 2.3 cM MAGMAS 51025 NM_139307 + 11307 4555221 246154 Vasn 0 CATGACCCCAGGTAGAGTAAGGA GAAATGACTCTCCGACCTCAAGA 7 1 5 1.1.2.3.5.1 BCBC-5B-0 14132590 P216524 9030425E11Rik Enhancer P216524 Enhancer Unique Tile chr9:40437413-40438429 (+) NM_133733 + 195 40437218 71566 9030425E11Rik ACAM|ASP5|AW557819|CLMP RIKEN cDNA 9030425E11 gene MGI:1918816 Mm.280560 9 9 A5.1 ASAM 79827 0 TTCTTCCTCTGGCTAGGTGAGTG GTTTGACTCCAGGTGGACAAGAG 7 1 6 1.1.2.3.6.1 BCBC-5B-0 14132609 P217274 Arhgef19 Enhancer P217274 Enhancer Unique Tile chr4:140516870-140517794 (+) NM_172520 + 464 140518258 213649 Arhgef19 6030432F23|6430573B13Rik|WGEF Rho guanine nucleotide exchange factor (GEF) 19 MGI:1925912 Mm.134460 4 4 E1 ARHGEF19 128272 0 CCCTCTGTGGTTTCTCTTCTTCA CCGGTATACAGTCACCAGTCACA 7 1 7 1.1.2.3.7.1 BCBC-5B-0 14132628 P218114 ChickenHuman P218114 ChickenHuman End Repeat Tile chr16:23743365-23744363 (+) 1 CACACACACACACACACACACAC ATGACACTGGGGATGAAGGTAGA 7 1 8 1.1.2.3.8.1 BCBC-5B-0 14132647 P219154 Elf5 Enhancer P219154 Enhancer Unique Tile chr2:103228061-103229004 (+) NM_010125 + 3097 103224964 13711 Elf5 - E74-like factor 5 MGI:1335079 Mm.20888 2 2 E3 ELF5 2001 NM_174994 - 38180 103189881 211039 BC016548 1 AGGCCTAGAGAGAAGGTGTTGCT TGATACCCCATAGGGTTAAAGGG 7 1 9 1.1.2.3.9.1 BCBC-5B-0 14132666 P219904 1810046J19Rik Enhancer P219904 Enhancer Unique Tile chr11:98253817-98254851 (-) NM_025559 - 211 98255062 103742 1810046J19Rik AI463380 RIKEN cDNA 1810046J19 gene MGI:1913678 Mm.259614 11 11 D C17orf37 84299 NM_010346 + 8129 98262980 14786 Grb7 0 ACGTCTCTTCTCCCCAGTAAACC TTACTCTTTATTGCCAAGAGCCG 7 1 10 1.1.2.3.10.1 BCBC-5B-0 14132685 P221026 Olfr1356 ProximalPromoter P221026 ProximalPromoter Unique Tile chr10:78250990-78251932 (-) NM_146308 - 52 78251042 258305 Olfr1356 MOR142-1|MOR142-2_p olfactory receptor 1356 MGI:3031190 Mm.377425 10 - NM_207571 + 30370 78282302 404334 Olfr1355 0 TGAGAACCATTGATCTACAGGCA GTGAATCCCAGGAGGAGAAAGTT 7 1 11 1.1.2.3.11.1 BCBC-5B-0 14132704 P221866 H28 ProximalPromoter P221866 ProximalPromoter Unique Tile chr3:151700198-151701535 (-) NM_031367 - 79 151700277 15061 H28 H-28|H28-1|NS1178 histocompatibility 28 MGI:95975 Mm.219544 3 3 H3|3 82.5 cM IFI44L 10964 NM_133871 - 12963 151687235 99899 Ifi44 1 TTTCACAGCAAGGAACAAGTCAA CAGTGAATCCTGTCCTTCAGAGG 7 1 12 1.1.2.3.12.1 BCBC-5B-0 14132723 P222616 Bves Enhancer P222616 Enhancer Unique Tile chr10:45024606-45025408 (+) NM_024285 + 420 45024186 23828 Bves Pop1|Popdc1 blood vessel epicardial substance MGI:1346013 Mm.332793 10 10 B2|10 29.0 cM BVES 11149 NM_024286 + 46710 44977896 78977 Popdc3 0 GGAGAGTCCGGGAAAATATCAGT CAAAGGAAATTGGCAAGGAAAAC 7 1 13 1.1.2.3.13.1 BCBC-5B-0 14132742 P223738 C730025P13Rik ProximalPromoter P223738 ProximalPromoter Unique Tile chr2:25076352-25077252 (+) NM_177344 + 210 25077462 227615 C730025P13Rik - RIKEN cDNA C730025P13 gene MGI:2443597 Mm.213925 2 2 A3 MGC14327 94107 NM_178239 - 135 25077387 78797 Ndor1 0 GACAGCATCACTGTGTCAATTCC GTGCAGGCTTTGGACTCTTACTC 7 1 14 1.1.2.3.14.1 BCBC-5B-0 14132761 P224488 1600029D21Rik Enhancer P224488 Enhancer Unique Tile chr9:50248982-50249933 (+) NM_029639 + 2208 50246774 76509 1600029D21Rik 0610037B23Rik|AA407923|AU043048|PLET1 RIKEN cDNA 1600029D21 gene MGI:1923759 Mm.29959 9 9 B C11orf34 349633 NM_011220 - 30938 50280871 19286 Pts 0 TGTAAGAAAGAAGCCTGAGGCAC TTTGTCTCACATCTCTGCATGGT 7 1 15 1.1.2.3.15.1 BCBC-5B-0 14132780 P225328 Olfr1505 ProximalPromoter P225328 ProximalPromoter Unique Tile chr19:13985057-13986049 (+) NM_001011850 + 9 13986040 258151 Olfr1505 MOR211-4P olfactory receptor 1505 MGI:3031339 Mm.377361 19 19 A OR9I1 219954 NM_146634 - 29830 13955227 258627 Olfr1504 0 AGGGACAAGTAGGGGGAACATAA CTTGGCCATGGATTCAATGTAGT 7 1 16 1.1.2.3.16.1 BCBC-5B-0 14132799 P226652 Ccin Pdx1 P226652 Pdx1 Unique Tile chr4:43994911-43995824 (+) NM_001002787 + 8779 44004603 442829 Ccin 4933417A14Rik calicin MGI:3045316 Mm.348215 4 4 B1 CCIN 881 NM_027450 + 16110 43978801 384009 Glipr2 0 CCTCCTCTGGGAAACAGAAAGAT TGTTAGGTGTGCACTTTACCAGC 7 1 17 1.1.2.3.17.1 BCBC-5B-0 14132818 P226826 Unc5d Pdx1 P226826 Pdx1 Unique Tile chr8:30644952-30645870 (+) NM_153135 - 39702 30685572 210801 Unc5d D930029E11Rik|KIAA1777|Unc5h4|mKIAA1777 unc-5 homolog D (C. elegans) MGI:2389364 Mm.248433; Mm.397887; Mm.248433; Mm.397887; Mm.248433; Mm.397887; Mm.248433; Mm.397887 8 8 A2-A3 UNC5D 137970 0 AAATAGCCACCAGCTTCTTCACA AATACACCCATGGAGTCTGCTCT 7 1 18 1.1.2.3.18.1 BCBC-5B-0 14132837 P002332 Stratagene PCR 1 P002332 Spike Control Negative Stratagene PCR 1 7 1 19 1.1.2.3.19.1 BCBC-5B-0 14132856 P003400 Cy3 Anchor P003400 Anchor Control Positive Cy3 Anchor 7 1 20 1.1.2.3.20.1 BCBC-5B-0 14132496 P211916 PufferfishHuman P211916 PufferfishHuman Unique Tile chr5:132318262-132319301 (-) 0 CAGCTCCTACTTTGGGTAGCTCA GACAAATGCCACCTATTTTCTGC 7 2 1 1.1.2.3.1.2 BCBC-5B-0 14132515 P212666 miRNA P212666 miRNA End Repeat Tile chr10:42823704-42824644 (+) mmu-mir-297-2 0 GCATGCATATGTGTTCATGTGTG CTGTCGTAAGTGGATCTGCCTCT 7 2 2 1.1.2.3.2.2 BCBC-5B-0 14132534 P213506 Tgfb1i1 Enhancer P213506 Enhancer Unique Tile chr7:128033174-128034131 (+) NM_009365 + 3887 128038018 21804 Tgfb1i1 ARA55|Hic5|TSC-5|hic-5 transforming growth factor beta 1 induced transcript 1 MGI:102784 Mm.3248 7 7 F1-F3 TGFB1I1 7041 NM_146205 + 3911 128029263 233912 Armc5 0 TTTCTTTCCGTCCTTTGAGACAG CCAAGAGCAGAGTGGGTAAAGAA 7 2 3 1.1.2.3.3.2 BCBC-5B-0 14132553 P214628 Acsm3 Enhancer P214628 Enhancer Unique Tile chr7:119552180-119553081 (+) NM_016870;NM_212442;NM_212441; + 69 119552111 20216 Acsm3 Sa|Sah acyl-CoA synthetase medium-chain family member 3 MGI:99538 Mm.334199 7 7 F3 ACSM3 6296 NM_027698 - 32028 119585109 71151 Exod1 0 GCTGTGTGGGAAGCAGTATCTTT ATGTCAACACCCCTTCATCAAAT 7 2 4 1.1.2.3.4.2 BCBC-5B-0 14132572 P215378 Blzf1 Enhancer P215378 Enhancer Unique Tile chr1:166139914-166140921 (-) NM_025505 - 3013 166143934 66352 Blzf1 1700030G05Rik|Blzf1l|Golgin-45|Jem-1 basic leucine zipper nuclear factor 1 MGI:1201607 Mm.33285 1 1 H1 BLZF1 8548 NM_178071;NM_138314; + 3480 166144401 171567 Nme7 0 GCAGCCCCTGTGTAGAAAGTAGA CCTTCAGGGCCTTCCTATGTAAT 7 2 5 1.1.2.3.5.2 BCBC-5B-0 14132591 P216500 Apex1 Enhancer P216500 Enhancer Unique Tile chr14:49847965-49848944 (-) NM_009687 + 994 49846971 11792 Apex1 APE|Apex|HAP1|Ref-1 apurinic/apyrimidinic endonuclease 1 MGI:88042 Mm.203 14 14 C3|14 18.5 cM APEX1 328 NM_133676 - 1121 49846844 66246 Osgep 0 GAAGCTACTGCAGGAGGGTATCA AAGGTTCCAGTTAGGTTTCCAGC 7 2 6 1.1.2.3.6.2 BCBC-5B-0 14132610 P217340 Fbxw8 Enhancer P217340 Enhancer Unique Tile chr5:118418682-118419637 (-) NM_172721 - 2267 118416415 231672 Fbxw8 4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29 F-box and WD-40 domain protein 8 MGI:1923041 Mm.221769 5 5 F FBXW8 26259 NM_007545 + 11156 118430793 12123 Hrk 0 GGGAATTCATTACTCCTCTGCCT TCACAATCTCCTTAACCTCCAGC 7 2 7 1.1.2.3.7.2 BCBC-5B-0 14132629 P218090 ChickenHuman P218090 ChickenHuman No Hits Tile 1 gggagagagagagagagagaggg attagaatctgcccatgagggtt 7 2 8 1.1.2.3.8.2 BCBC-5B-0 14132648 P219130 Xlr4b ProximalPromoter P219130 ProximalPromoter Unique Tile chrX:69466060-69467099 (+) NM_021365 + 15 69467084 27083 Xlr4b Xlr4 X-linked lymphocyte-regulated 4B MGI:1350975 Mm.104764 X X A7.3|X 29.0 cM NM_007978 + 13926 69481025 14070 F8a 0 CCTTTTTGTTCTCTTGCTCTTGC TCTCCTCAGAACCCTTTACCTCC 7 2 9 1.1.2.3.9.2 BCBC-5B-0 14132667 P219880 Olfr635 ProximalPromoter P219880 ProximalPromoter Unique Tile chr7:103852057-103852989 (+) NM_147118 + 7 103852996 259122 Olfr635 MOR5-2 olfactory receptor 635 MGI:3030469 Mm.377860 7 - OR51Q1 390061 NM_147120 + 24090 103877079 259124 Olfr638 0 CCTCATCTTGGCTTCACTTCCTA CTGCAATCCACATTAAACACAGC 7 2 10 1.1.2.3.10.2 BCBC-5B-0 14132686 P220720 2310057J18Rik Enhancer P220720 Enhancer Unique Tile chr10:28678332-28679247 (-) NM_026336 - 2613 28675719 67719 2310057J18Rik 2210414P04Rik RIKEN cDNA 2310057J18 gene MGI:1914969 Mm.338476 10 10 A4 0 TCCAATGATATCCAGCCTCTTTC ATGTGTTTCTTCCTTTCCAAGCA 7 2 11 1.1.2.3.11.2 BCBC-5B-0 14132705 P221842 1700013G24Rik ProximalPromoter P221842 ProximalPromoter Unique Tile chr4:136724298-136725271 (+) NM_027063 + 101 136725372 69380 1700013G24Rik AI507018 RIKEN cDNA 1700013G24 gene MGI:1916630 Mm.272519 4 4 D3 NM_026419 - 21702 136702596 67868 Ela3 1 AGGGTTTCTCTGTATAGCCCTGG GGAACTACTAGCAACCTGCCAGA 7 2 12 1.1.2.3.12.2 BCBC-5B-0 14132724 P222592 Pgpep1 Enhancer P222592 Enhancer Unique Tile chr8:73587708-73588654 (-) NM_023217 - 2 73588656 66522 Pgpep1 2810003H13Rik|PGP|PGP-I|PGPI|Pcp pyroglutamyl-peptidase I MGI:1913772 Mm.154906 8 8 C1 PGPEP1 54858 NM_015816 + 13582 73602236 50783 Lsm4 2 ATCCTAGAGAGTGCATTCCACCA TAACTCAGGTGGTAAGAGCCTGC 7 2 13 1.1.2.3.13.2 BCBC-5B-0 14132743 P223714 D4Wsu114e Enhancer P223714 Enhancer Unique Tile chr4:146708863-146709908 (+) NM_001025365 - 2354 146712262 28010 D4Wsu114e AA553001|AI853621 DNA segment, Chr 4, Wayne State University 114, expressed MGI:106506 Mm.250504 4 4 E2|4 76.4 cM RP5-1077B9.4 60672 NM_010244 + 2870 146712778 14349 Fv1 0 TATAGGCCAGCAGTCACAGTTCA GCCACAGCAGGGTAAATTACAAG 7 2 14 1.1.2.3.14.2 BCBC-5B-0 14132762 P224554 Olfr493 ProximalPromoter P224554 ProximalPromoter Unique Tile chr7:108138160-108139161 (-) NM_146310 - 4 108138156 258307 Olfr493 MOR204-35 olfactory receptor 493 MGI:3030327 Mm.377427 7 - NM_146737 + 19507 108158668 258732 Olfr494 0 CTTGCTGCTAGGGAAGATCATGT ACAGTGTAGTTGCTGCCAGATCA 7 2 15 1.1.2.3.15.2 BCBC-5B-0 14132781 P225304 Olfr1016 ProximalPromoter P225304 ProximalPromoter Unique Tile chr2:85601026-85602096 (-) NM_001011758 - 81 85601107 257915 Olfr1016 MOR213-9 olfactory receptor 1016 MGI:3030850 Mm.377300 2 2 D NM_146571 + 14675 85586351 258564 Olfr1015 0 AGCTGTGTGCATGTAAGAAGCAA CAAACAGGACCAATTGTGTGGTA 7 2 16 1.1.2.3.16.2 BCBC-5B-0 14132800 P226628 Insr Pdx1 P226628 Pdx1 Unique Tile chr8:3260256-3261168 (+) NM_010568 - 18008 3279176 16337 Insr 4932439J01Rik|CD220|IR insulin receptor MGI:96575 Mm.268003 8 8 A1.1|8 1.0 cM INSR 3643 0 ATTTCAAACTCTTAAGCCAGCCC GGGAAGGAGAGGGTATGTTTCAT 7 2 17 1.1.2.3.17.2 BCBC-5B-0 14132819 P226802 1810011O16Rik Pdx1 P226802 Pdx1 Unique Tile chr12:55619006-55619924 (+) NM_025456 - 1508 55617498 66266 1810011O16Rik EAPP RIKEN cDNA 1810011O16 gene MGI:1913516 Mm.156440 12 12 C1 C14orf11 55837 NM_134054 - 40882 55578124 104725 1110002B05Rik 0 AAGCAAACCCAAAAGGTGTTGTA TAGCGCATCTTCCTTGATTTCTC 7 2 18 1.1.2.3.18.2 BCBC-5B-0 14132838 P003033 Blank P003033 Buffer Control Negative Blank 7 2 19 1.1.2.3.19.2 BCBC-5B-0 14132857 P003352 Cy3 Anchor P003352 Anchor Control Positive Cy3 Anchor 7 2 20 1.1.2.3.20.2 BCBC-5B-0 14132497 P211892 Hmx3 PufferfishHuman P211892 PufferfishHuman Unique Tile chr7:131288414-131289331 (+) NM_008257 + 44779 131334110 15373 Hmx3 Nkx-5.1|Nkx5-1|Nkx5.1 H6 homeo box 3 MGI:107160 Mm.323562 7 7 F3|7 65.0 cM HMX3 340784 0 CAAAGAGCAGGAAGCCTGTTTTA GACTAAGGCCAGGGCTAATGACT 7 3 1 1.1.2.3.1.3 BCBC-5B-0 14132516 P212732 miRNA P212732 miRNA Unique Tile chr12:110032336-110033302 (+) mmu-mir-337 0 GGGATGTCCCTGTTCTTTTCTTT GTGACTGTGGTCACAGGAGTGTC 7 3 2 1.1.2.3.2.3 BCBC-5B-0 14132535 P213482 Stx4a Enhancer P213482 Enhancer Unique Tile chr7:127633278-127634284 (+) NM_009294 + 163 127633115 20909 Stx4a Stx4|Syn4 syntaxin 4A (placental) MGI:893577 Mm.24867 7 7 F4 STX4 6810 NM_024414 - 17823 127615455 56216 Stx1b2 0 CTGGAGTGAGGACTCCTGGTTT GGTGAGAAGAGAGAAGGGAGAGG 7 3 3 1.1.2.3.3.3 BCBC-5B-0 14132554 P214604 Bnip2 Enhancer P214604 Enhancer Unique Tile chr9:69789021-69789929 (+) NM_001008238;NM_016787; + 340 69788681 12175 Bnip2 5730523P12Rik|BNIP2beta|Nip21 BCL2/adenovirus E1B interacting protein 1, NIP2 MGI:109327 Mm.159777 9 9 D NM_001039519 + 21784 69811713 235459 Gtf2a2 0 CCTTCCTTTTTCCGTCTGTGG GGCAACCAAACATTGGTAACTTC 7 3 4 1.1.2.3.4.3 BCBC-5B-0 14132573 P215354 Rpl7l1 Enhancer P215354 Enhancer Intra Repeat: SINE Tile chr17:46249795-46250730 (-) NM_025433 - 3952 46245843 66229 Rpl7l1 1500016H10Rik ribosomal protein L7-like 1 MGI:1913479 Mm.218533 17 17 C RPL7L1 285855 NM_025966 + 13970 46235825 67101 2310039H08Rik 1 TCTCTGTATAGCCTTCGCTGTCC CCAGCCTGGTCTACAAAGTGAGT 7 3 5 1.1.2.3.5.3 BCBC-5B-0 14132592 P216194 Dapk1 Enhancer P216194 Enhancer Unique Tile chr13:60612175-60613244 (+) NM_029653 + 127 60612048 69635 Dapk1 2310039H24Rik|2810425C21Rik|AI642003|D13Ucla1|DAP-Kinase death associated protein kinase 1 MGI:1916885 Mm.24103 13 13 B2|13 40.0 cM DAPK1 1612 1 GGAAAACGTGGACGACTACTACG TAGACCTCTCTCTTTCCTGGGCT 7 3 6 1.1.2.3.6.3 BCBC-5B-0 14132611 P217316 Kctd3 Enhancer P217316 Enhancer Unique Tile chr1:190703549-190704550 (-) NM_172650 - 4065 190708615 226823 Kctd3 4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45 potassium channel tetramerisation domain containing 3 MGI:2444629 Mm.209880; Mm.392649; Mm.406821; Mm.209880; Mm.392649; Mm.406821; Mm.209880; Mm.392649; Mm.406821; Mm.209880; Mm.392649; Mm.406821; Mm.209880; Mm.392649; Mm.406821; Mm.209880; Mm.392649; Mm.406821; Mm.209880; Mm.392649; Mm.406821; Mm.209880; Mm.392649; Mm.406821; Mm.209880; Mm.392649; Mm.406821; Mm.209880; Mm.392649; Mm.406821; Mm.209880; Mm.392649; Mm.406821; Mm.209880; Mm.392649; Mm.406821; Mm.209880; Mm.392649; Mm.406821; Mm.209880; Mm.392649; Mm.406821 1 1 H6 KCTD3 51133 0 AGACCCGATCTTTAAATCCAAGC AAGTCAGATGCACTCTACCCAGC 7 3 7 1.1.2.3.7.3 BCBC-5B-0 14132630 P218066 Hist1h3e ChickenHuman P218066 ChickenHuman End Repeat Tile chr13:23569389-23570288 (+) NM_178205 - 441 23569830 319151 Hist1h3e H3-f histone 1, H3e MGI:2448326 Mm.261658 13 - HIST1H3E 8353 NM_145713 + 6890 23562499 14957 Hist1h1d 1 GGTTTACGTGCCAGTGTAGAAGG TGTGTGTGTGTGTGTGTGTGTGT 7 3 8 1.1.2.3.8.3 BCBC-5B-0 14132649 P219106 Myoz3 ProximalPromoter P219106 ProximalPromoter Unique Tile chr18:60717069-60718126 (-) NM_133363 - 16 60717085 170947 Myoz3 MGC123456|MGC123457 myozenin 3 MGI:2179296 Mm.379312 18 18 D3 MYOZ3 91977 NM_025776 + 30913 60686156 66810 Rbm22 0 CCCCTTCAACCACAGTGTATAGC GCCACAGTAGATGGGAAGAAATG 7 3 9 1.1.2.3.9.3 BCBC-5B-0 14132668 P219946 ProximalPromoter P219946 ProximalPromoter No Hits Tile 0 cattttctggatccattcctctg tcccattacaatctgggaaaaga 7 3 10 1.1.2.3.10.3 BCBC-5B-0 14132687 P220696 Klhl13 Enhancer P220696 Enhancer Unique Tile chrX:22520888-22521908 (-) NM_026167 - 104 22522012 67455 Klhl13 1200009K10Rik|AI451128|Bklhd2|D130072F20Rik|mKIAA1309 kelch-like 13 (Drosophila) MGI:1914705 Mm.224306 X X A2 KLHL13 90293 0 AATCTCCCACTGCCTGAAGACT GGCTTGCTCCAAAAATCTAAGGT 7 3 11 1.1.2.3.11.3 BCBC-5B-0 14132706 P221818 Hint1 ProximalPromoter P221818 ProximalPromoter Unique Tile chr11:54708801-54709749 (+) NM_008248 + 66 54709815 15254 Hint1 AA673479|Hint|Ipk1|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 MGI:1321133 Mm.425 11 11 B1.3 HINT1 3094 NM_029327 - 4462 54704339 75530 1700024C24Rik 0 GTCTAGAGAACGCTGATTGGAGG TGCCTCTGCACCTCTATAGGAAA 7 3 12 1.1.2.3.12.3 BCBC-5B-0 14132725 P222568 Olfr1310 ProximalPromoter P222568 ProximalPromoter Unique Tile chr2:111810035-111811086 (-) NM_146449 - 12 111810023 258441 Olfr1310 MOR245-3 olfactory receptor 1310 MGI:3031144 Mm.377504 2 - NM_146274 - 11605 111822691 258271 Olfr1311 2 ATCTTCACAGGGTCCTGACACAT ACAACCGTGGTGCTATCTGAAAT 7 3 13 1.1.2.3.13.3 BCBC-5B-0 14132744 P223408 E230016K23Rik Enhancer P223408 Enhancer Unique Tile chr11:83398510-83399561 (-) NM_001001498 + 260 83398250 414102 E230016K23Rik - RIKEN cDNA E230016K23 gene MGI:3041204 Mm.341706 11 11 C NM_011338 - 3679 83394831 20308 Ccl9 0 ATTTCCAGAAACATGACTCCCAA AGAGGGAAGAAGATTTCAGGGTG 7 3 14 1.1.2.3.14.3 BCBC-5B-0 14132763 P224530 Arc Enhancer P224530 Enhancer Unique Tile chr15:74495120-74496068 (-) NM_018790 - 3746 74499814 11838 Arc Arc3.1|C86064|arg 3.1 activity regulated cytoskeletal-associated protein MGI:88067 Mm.25405 15 15 D3|15 41.4 cM ARC 23237 NM_008415 - 38649 74534717 16469 Jrk 0 TGGAGACAGGGTCAATGTCCTAT TCCCTCCTTTCCATCTGTAACCT 7 3 15 1.1.2.3.15.3 BCBC-5B-0 14132782 P225280 ProximalPromoter P225280 ProximalPromoter Unique Tile chr3:49478681-49479607 (-) 0 ACCTGCTACATCCACTCCAGAAG CACCTTCTTCTTCTTCTCATGGC 7 3 16 1.1.2.3.16.3 BCBC-5B-0 14132801 P226604 Pdx1 P226604 Pdx1 Unique Tile chr10:69576396-69577308 (+) 0 GTTTTGATCCTCCTGCTTCTGC CGTAGCCACGCAACACATAAATA 7 3 17 1.1.2.3.17.3 BCBC-5B-0 14132820 P226868 Samd14 Pdx1 P226868 Pdx1 Unique Tile chr11:94826867-94827787 (+) NM_146025;NM_178049; + 419 94826448 217125 Samd14 AI839049|AI854782|BC034054|MGC31049 sterile alpha motif domain containing 14 MGI:2384945 Mm.297199 11 11 D SAMD14 201191 NM_172261 + 19566 94807301 217124 Ppp1r9b 0 CCCGCCTGAGGAAATTAATAAGA AGGAGAAAGCCAAACAAAAGGTC 7 3 18 1.1.2.3.18.3 BCBC-5B-0 14132839 P003009 Blank P003009 Buffer Control Negative Blank 7 3 19 1.1.2.3.19.3 BCBC-5B-0 14132858 P003184 Blank P003184 Buffer Control Negative Blank 7 3 20 1.1.2.3.20.3 BCBC-5B-0 14132498 P211586 PufferfishHuman P211586 PufferfishHuman Unique Tile chr2:44860312-44861215 (+) 0 ACACTCCTGAAAGCCTGATGGTA GCAGGTCTTCTAGCAACTGTGGT 7 4 1 1.1.2.3.1.4 BCBC-5B-0 14132517 P212708 miRNA P212708 miRNA Unique Tile chr4:88385605-88386568 (-) mmu-mir-31 0 GCAAATTCTCTGGTGCATCTCTT TCCAGTAAAGAAGGCCAAAATGA 7 4 2 1.1.2.3.2.4 BCBC-5B-0 14132536 P213458 Snrpd1 Enhancer P213458 Enhancer Unique Tile chr18:10617949-10618870 (+) NM_009226 + 131 10617818 20641 Snrpd1 AA407109|AL023031|SMD1 small nuclear ribonucleoprotein D1 MGI:98344 Mm.244671; Mm.603; Mm.244671; Mm.603; Mm.244671; Mm.603; Mm.244671; Mm.603; Mm.244671; Mm.603; Mm.244671; Mm.603; Mm.244671; Mm.603; Mm.244671; Mm.603; Mm.244671; Mm.603; Mm.244671; Mm.603; Mm.244671; Mm.603; Mm.244671; Mm.603 18 18 A1 SNRPD1 6632 0 GAGGACGACGGGTAGAGGATTT TATCAGGGAGTAAAGAAACGGCA 7 4 3 1.1.2.3.3.4 BCBC-5B-0 14132555 P214580 Cdc37 Enhancer P214580 Enhancer Unique Tile chr9:20903582-20904484 (-) NM_016742 - 3251 20900331 12539 Cdc37 p50 cell division cycle 37 homolog (S. cerevisiae) MGI:109531 Mm.32331 9 9 A3 CDC37 11140 NM_019798;NM_183408; + 11708 20916192 18577 Pde4a 0 TTCCTATTTCCCCTACCAGCATT CCAGGAATATCCCAGATTAAGGG 7 4 4 1.1.2.3.4.4 BCBC-5B-0 14132574 P215420 3110001A13Rik Enhancer P215420 Enhancer Unique Tile chr2:3630918-3631880 (+) NM_025626 + 144 3630774 66540 3110001A13Rik AA589595|AA959793|AI132312 RIKEN cDNA 3110001A13 gene MGI:1913790 Mm.277864 2 2 A1 1 CCCCACACTTACTTCTCACACAA GACAGGCATCTCTGACAGGATTT 7 4 5 1.1.2.3.5.4 BCBC-5B-0 14132593 P216170 Tmem98 Enhancer P216170 Enhancer Unique Tile chr11:80628462-80629397 (+) NM_029537 + 1853 80626609 103743 Tmem98 6530411B15Rik|AI463522 transmembrane protein 98 MGI:1923457 Mm.151948; Mm.27682; Mm.395064; Mm.151948; Mm.27682; Mm.395064; Mm.151948; Mm.27682; Mm.395064; Mm.151948; Mm.27682; Mm.395064; Mm.151948; Mm.27682; Mm.395064; Mm.151948; Mm.27682; Mm.395064; Mm.151948; Mm.27682; Mm.395064 11 11 B5 TMEM98 26022 NM_177390 - 32242 80596220 338367 Myo1d 0 TGCAAATGTGTCCTAAGCTTCAA CCCTTATGGATCTCTCTGCTCAA 7 4 6 1.1.2.3.6.4 BCBC-5B-0 14132612 P217292 Trim47 Enhancer P217292 Enhancer Unique Tile chr11:115924104-115925096 (-) NM_172570 - 1202 115926298 217333 Trim47 2210023F24Rik tripartite motif protein 47 MGI:1917374 Mm.347770 11 11 E2 TRIM47 91107 NM_016852 - 21042 115903062 22378 Wbp2 0 AGTCAGCCACTTTGTATGGGTGT GGAGAGAGCAGAGGAGACAACAG 7 4 7 1.1.2.3.7.4 BCBC-5B-0 14132631 P218042 1700019N19Rik ChickenHuman P218042 ChickenHuman Unique Tile chr19:58848694-58849761 (+) NM_026208 - 1030 58847664 67507 1700019N19Rik - RIKEN cDNA 1700019N19 gene MGI:1914757 Mm.27027 19 19 D2 C10orf82 143379 NM_011128 + 35681 58813013 18947 Pnliprp2 0 CTGGAAGGAAGCCAAGGATTTAT GAAAGGGTGTGATTTCACTGGAC 7 4 8 1.1.2.3.8.4 BCBC-5B-0 14132650 P218800 Utp15 Enhancer P218800 Enhancer End Repeat Tile chr13:99360394-99361360 (+) NM_178918 - 1789 99363149 105372 Utp15 AW544865 UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast) MGI:2145443 Mm.28221 13 13 D1 NM_023472 + 2038 99363398 68558 Ankra2 1 ATCCTCCGGAACTGGAGTTAAAG TGTGTGTGTGTGTGTGTGTGTGT 7 4 9 1.1.2.3.9.4 BCBC-5B-0 14132669 P219922 Cryaa ProximalPromoter P219922 ProximalPromoter Unique Tile chr17:31405708-31406710 (+) NM_013501 + 11 31406699 12954 Cryaa AI323437|Acry-1|Crya-1|Crya1|DAcry-1|lop18 crystallin, alpha A MGI:88515 Mm.1228 17 17 A3-B|17 17.4 cM CRYAA 1409 NM_024187 - 18283 31387425 108121 U2af1 0 AAGCGTTTGTCATGTGCATCTTA CTTCTATTTGGTGATGCAGGGAC 7 4 10 1.1.2.3.10.4 BCBC-5B-0 14132688 P220672 C1galt1 ProximalPromoter P220672 ProximalPromoter Unique Tile chr6:7794456-7795349 (+) NM_052993 + 17 7795332 94192 C1galt1 2210410E06Rik|AV284120|T-synthase core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase MGI:2151071 Mm.102752; Mm.393184; Mm.102752; Mm.393184; Mm.102752; Mm.393184; Mm.102752; Mm.393184; Mm.102752; Mm.393184; Mm.102752; Mm.393184; Mm.102752; Mm.393184; Mm.102752; Mm.393184; Mm.102752; Mm.393184; Mm.102752; Mm.393184; Mm.102752; Mm.393184 6 6 A1 C1GALT1 56913 0 TAATTTCGCTTTCTGCTTTCCTG ATAACCGACCAGCTCCAGACA 7 4 11 1.1.2.3.11.4 BCBC-5B-0 14132707 P221794 ProximalPromoter P221794 ProximalPromoter No Hits Tile 1 aagcaggaggaggaggaggag gagggtgctgacctgagaatctt 7 4 12 1.1.2.3.12.4 BCBC-5B-0 14132726 P222634 4930558O21Rik Enhancer P222634 Enhancer Unique Tile chr3:30833068-30834105 (+) NM_026668 + 1239 30835344 68307 4930558O21Rik - RIKEN cDNA 4930558O21 gene MGI:1915557 Mm.389425 3 3 A3 LOC344657 344657 NM_027941 - 2037 30836142 71827 Lrrc34 0 AGTCACCCAGTTCCAGGACATAA AGCAAGTGTTCGTATCCACCATT 7 4 13 1.1.2.3.13.4 BCBC-5B-0 14132745 P223384 V1re1 ProximalPromoter P223384 ProximalPromoter Unique Tile chr17:20518097-20519117 (+) NM_134190 + 74 20519191 171224 V1re1 - vomeronasal 1 receptor, E1 MGI:2159615 Mm.377183 17 17 A3.2 NM_134197 + 32130 20551247 171231 V1re8 0 GCTGACATAGCATCATTGAGCAC TCTAAGTTGGGATGTGTGGGTCT 7 4 14 1.1.2.3.14.4 BCBC-5B-0 14132764 P224506 Irf4 Enhancer P224506 Enhancer Unique Tile chr13:30758790-30759854 (+) NM_013674 + 2068 30756722 16364 Irf4 AI385587|IRF-4|LSIRF|Spip interferon regulatory factor 4 MGI:1096873 Mm.4677 13 13 A3.3 IRF4 3662 0 CTTAGGACTGATGTCCCCAGAGA GTTAAGGCATCCTGTATGGTTGG 7 4 15 1.1.2.3.15.4 BCBC-5B-0 14132783 P225256 ProximalPromoter P225256 ProximalPromoter Unique Tile chr17:90116765-90117813 (-) 0 TCTTCCCCAGTGTTGTTTCTCTC CGATGTCATCTGTCCCAACATTA 7 4 16 1.1.2.3.16.4 BCBC-5B-0 14132802 P226778 Ldoc1l Pdx1 P226778 Pdx1 Unique Tile chr15:84355755-84356672 (+) NM_177630 - 28586 84385258 223732 Ldoc1l BC058638|MGC73499|Mar6|Mart6 leucine zipper, down-regulated in cancer 1-like Mm.6471 15 15 E2 2 CCTTGACTTTGAATGCTTCCACT CAATGGCTCACAACCATCTGTAA 7 4 17 1.1.2.3.17.4 BCBC-5B-0 14132821 P226844 Pdx1 P226844 Pdx1 Unique Tile chr3:55556739-55557658 (+) 2 TAAAGGATTGTTCAAGGGCCATA AATGCACATAAACACCCACACAC 7 4 18 1.1.2.3.18.4 BCBC-5B-0 14132840 P002985 Blank P002985 Buffer Control Negative Blank 7 4 19 1.1.2.3.19.4 BCBC-5B-0 14132859 P003184 Blank P003184 Buffer Control Negative Blank 7 4 20 1.1.2.3.20.4 BCBC-5B-0 14132499 P211562 Zfp238 PufferfishHuman P211562 PufferfishHuman Unique Tile chr1:179281747-179282726 (-) NM_013915;NM_001012330; + 231 179282495 30928 Zfp238 RP58 zinc finger protein 238 MGI:1353609 Mm.330700 1 1 H3 ZNF238 10472 1 GTGAAAGAAGGGAAGGCAAAGAT AATATGGCTTTTGGAGCTCACTG 7 5 1 1.1.2.3.1.5 BCBC-5B-0 14132518 P212684 miRNA P212684 miRNA Unique Tile chr4:120262101-120263072 (+) mmu-mir-30c-1 0 AAAAGTGGCAAAGCAAGTTCAAG TCCAGTTTACTACTGCAGGCTCC 7 5 2 1.1.2.3.2.5 BCBC-5B-0 14132537 P213434 Siah1a Enhancer P213434 Enhancer Unique Tile chr8:89634812-89635753 (-) NM_009172 - 286 89636039 20437 Siah1a AI853500|Sinh1a seven in absentia 1A Mm.324553 8 8 C3|8 38.5 cM 1 CCTCGCTCAGTCTTTGTTGTGT CCCAAATTCCATCATCTCACAAA 7 5 3 1.1.2.3.3.5 BCBC-5B-0 14132556 P214274 Xlr3a Enhancer P214274 Enhancer Unique Tile chrX:69349089-69350039 (-) NM_011726 - 278 69349761 22445 Xlr3a MGC102490|MGC130195|MGC130233|Xlr3 X-linked lymphocyte-regulated 3A MGI:109506 Mm.195091 X X A7.3|X 29.12 cM NM_001025384 + 19727 69369766 574405 LOC574405 0 GGGCATGTGTATTCTTTTGCTTC AGAGGCCCCATATTCTGGAGTAG 7 5 4 1.1.2.3.4.5 BCBC-5B-0 14132575 P215396 Cyb5b Enhancer P215396 Enhancer Unique Tile chr8:110036290-110037251 (+) NM_025558 + 2517 110039768 66427 Cyb5b 1810044O22Rik|AU015618|Cyb5m cytochrome b5 type B MGI:1913677 Mm.20242 8 8 D2 CYB5B 80777 0 CACCTGGGATGCATTTCTTTAGT CAAAGAAACCAGTTCTCCTCCAA 7 5 5 1.1.2.3.5.5 BCBC-5B-0 14132594 P216146 Ndufs7 Enhancer P216146 Enhancer Unique Tile chr10:79655161-79656158 (+) NM_029272 + 2558 79652603 75406 Ndufs7 1010001M04Rik NADH dehydrogenase (ubiquinone) Fe-S protein 7 MGI:1922656 Mm.28712 10 10 C1|10 43.0 cM NDUFS7 374291 NM_010255 - 7925 79664083 14431 Gamt 0 ATACAGTTGCATTCCAAGGTGCT AGTCAGCAGTTCCTTCTCACCAC 7 5 6 1.1.2.3.6.5 BCBC-5B-0 14132613 P217268 BC057552 Enhancer P217268 Enhancer Unique Tile chr8:86996619-86997674 (-) NM_172502 - 1741 86994878 212123 BC057552 6720484B16|MGC66593 cDNA sequence BC057552 MGI:2684420 Mm.260557 8 8 C3 LOC90379 90379 NM_001013384 + 18419 87016093 244550 5832418A03Rik 0 GGGCCTGTATATGATGGTGGTTA AGAAACCTGTTTTACTGCCCCTC 7 5 7 1.1.2.3.7.5 BCBC-5B-0 14132632 P218108 ChickenHuman P218108 ChickenHuman Unique Tile chr2:136464246-136465273 (+) 0 AACCAAGAAGCTACTGAACTGCG CACTTCTTTAAGCGAAGAACCGA 7 5 8 1.1.2.3.8.5 BCBC-5B-0 14132651 P218776 Capza1 ProximalPromoter P218776 ProximalPromoter Unique Tile chr3:104992365-104993428 (-) NM_009797 - 71 104992436 12340 Capza1 CAPZ|CAZ1|Cappa1 capping protein (actin filament) muscle Z-line, alpha 1 MGI:106227 Mm.378893; Mm.392025; Mm.378893; Mm.392025; Mm.378893; Mm.392025; Mm.378893; Mm.392025; Mm.378893; Mm.392025; Mm.378893; Mm.392025; Mm.378893; Mm.392025; Mm.378893; Mm.392025; Mm.378893; Mm.392025; Mm.378893; Mm.392025; Mm.378893; Mm.392025; Mm.378893; Mm.392025; Mm.378893; Mm.392025; Mm.378893; Mm.392025; Mm.378893; Mm.392025; Mm.378893; Mm.392025; Mm.378893; Mm.392025; Mm.378893; Mm.392025; Mm.378893; Mm.392025 3 3 F2.2|3 55.0 cM CAPZA1 829 NM_153091 + 292 104993136 229681 St7l 0 CTCCCCGAGAATCTCTGATCTTT AGGAAGTAAAAGAGAGAGGCGGA 7 5 9 1.1.2.3.9.5 BCBC-5B-0 14132670 P219898 Tmem143 Enhancer P219898 Enhancer Unique Tile chr7:45767521-45768467 (-) NM_144801 + 2405 45765116 70209 Tmem143 2310076O21Rik|AI481604 transmembrane protein 143 MGI:1917459 Mm.163766 7 7 B3 TMEM143 55260 NM_021482 - 2768 45764753 58867 Syngr4 0 TATGGAAGGGCTAGAGGAAAAGG TCTTAACCACTGTGCCTCCTCTC 7 5 10 1.1.2.3.10.5 BCBC-5B-0 14132689 P220648 Trpv4 Enhancer P220648 Enhancer Unique Tile chr5:114918288-114919226 (-) NM_022017 - 160 114919386 63873 Trpv4 0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC transient receptor potential cation channel, subfamily V, member 4 MGI:1926945 Mm.266450 5 - TRPV4 59341 NM_019821 - 32641 114951867 56356 Gltp 0 CACGAAAGTCACCTGTGGATTG ATGGCCCTTTCCTATTCTCTGTC 7 5 11 1.1.2.3.11.5 BCBC-5B-0 14132708 P221488 Mina Enhancer P221488 Enhancer Unique Tile chr16:59416986-59417891 (+) NM_025910 + 2663 59414323 67014 Mina 1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204 myc induced nuclear antigen MGI:1914264 Mm.289150 16 16 C1.3 MINA 84864 0 ATGGGTATCTGGTCCACTTGATG AATACAGAAAGCGTTTCAGGCAG 7 5 12 1.1.2.3.12.5 BCBC-5B-0 14132727 P222610 Hsn2 ProximalPromoter P222610 ProximalPromoter Unique Tile chr6:119915887-119916835 (-) NM_001037155 - 13400 119929287 406236 Hsn2 - hereditary sensory neuropathy, type II Mm.333349 6 6 F1 NM_011236 + 47541 119868346 19365 Rad52 2 CACACACACACACACTCAAGGAA AGCAATTGGTTGCTTGAACTCTC 7 5 13 1.1.2.3.13.5 BCBC-5B-0 14132746 P223360 Tshz3 ProximalPromoter P223360 ProximalPromoter Unique Tile chr7:36405839-36406741 (+) NM_172298 + 136 36406877 243931 Tshz3 A630038G13Rik|KIAA1474|Tsh3|Zfp537|mKIAA1474|teashirt3 teashirt zinc finger family member 3 MGI:2442819 Mm.44141 7 7 B2 TSHZ3 57616 0 AGTAAAGGAAACTTGGAGGTGCC AGAGGAGGAGGAGGAGGAGGAG 7 5 14 1.1.2.3.14.5 BCBC-5B-0 14132765 P224482 Hsd3b6 Enhancer P224482 Enhancer Unique Tile chr3:98946670-98947666 (-) NM_013821 - 3172 98943498 15497 Hsd3b6 D19210 hydroxysteroid dehydrogenase-6, delta<5>-3-beta MGI:109598 Mm.14435 3 3 F2.2 HSD3B1 3283 NM_008293 - 39589 98987255 15492 Hsd3b1 0 CACACATGATTTCCCCATTACCT GCCATTTCCTCTTCTCTCCAAAT 7 5 15 1.1.2.3.15.5 BCBC-5B-0 14132784 P225322 ProximalPromoter P225322 ProximalPromoter Duplication Tile chr18:3123329-3124397 (-) 0 AACACTACAATTGGAACGTGGCT GATTGAGGAATTGCCAAACATTC 7 5 16 1.1.2.3.16.5 BCBC-5B-0 14132803 P226754 Ccnc Pdx1 P226754 Pdx1 Unique Tile chr4:21786351-21787267 (+) NM_016746 + 31293 21818560 51813 Ccnc AI451004|AU020987|CG1C cyclin C MGI:1858199 Mm.278584 4 4 A3 CCNC 892 0 TTTTGGAGGGGAATCTAGGAAAG ACATCTGCTGATTTCCCACTGAT 7 5 17 1.1.2.3.17.5 BCBC-5B-0 14132822 P226820 Pdx1 P226820 Pdx1 Unique Tile chr5:37953716-37954634 (+) 0 GATCCTAGAGTCCAGGGAGTGTG AACTCTGAGGCCTGTCTTCCTTT 7 5 18 1.1.2.3.18.5 BCBC-5B-0 14132841 P002961 Blank P002961 Buffer Control Negative Blank 7 5 19 1.1.2.3.19.5 BCBC-5B-0 14132860 P003088 Blank P003088 Buffer Control Negative Blank 7 5 20 1.1.2.3.20.5 BCBC-5B-0 14132500 P211538 PufferfishHuman P211538 PufferfishHuman Unique Tile chr14:96774057-96775043 (+) 0 GCATTGCCATTTTGAGATGAGAT TGACAGATGAAGCTGAAAACCAA 7 6 1 1.1.2.3.1.6 BCBC-5B-0 14132519 P212660 miRNA P212660 miRNA Inter Repeats Tile chr7:10228153-10229074 (-) mmu-mir-297-1 0 TCAGTGCCAAGTCAATGTCAAGT GGATGTGGCCATTAGTCACTAGG 7 6 2 1.1.2.3.2.6 BCBC-5B-0 14132538 P213500 Terf1 Enhancer P213500 Enhancer Unique Tile chr1:15787715-15788703 (+) NM_009352 + 2168 15790871 21749 Terf1 Pin2|Trbf1|Trf1 telomeric repeat binding factor 1 MGI:109634 Mm.4306 1 1 E3|1 11.8 cM TERF1 7013 0 TGCGTAATGTACACCAAGAATGG TTTCCTGTCAATAACCCCAGAGA 7 6 3 1.1.2.3.3.6 BCBC-5B-0 14132557 P214250 Ube3a Enhancer P214250 Enhancer Unique Tile chr7:59097336-59098240 (+) NM_173010;NM_011668;NM_001033962; + 716 59096620 22215 Ube3a 4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a|KIAA4216|mKIAA4216 ubiquitin protein ligase E3A MGI:105098 Mm.9002 7 7 B5|7 28.65 cM UBE3A 7337 0 CTTAACTGTCAGTGCTGGCTGG TGTCAAAAACATTCGTCGTGTCT 7 6 4 1.1.2.3.4.6 BCBC-5B-0 14132576 P215372 Mrps14 Enhancer P215372 Enhancer Unique Tile chr1:162028428-162029373 (+) NM_025474 + 2563 162031936 64659 Mrps14 1810032L21Rik|AL022847|Rpms14 mitochondrial ribosomal protein S14 MGI:1928141 Mm.29599 1 1 H2.1 MRPS14 63931 NM_009786 - 20081 162049454 12301 Cacybp 0 ATGAGGCTTTATTCAGGGAAAGC CTCCAGGGAGCTCCTTTAAACAT 7 6 5 1.1.2.3.5.6 BCBC-5B-0 14132595 P216122 Sema3d Enhancer P216122 Enhancer Unique Tile chr5:12384875-12385789 (+) NM_028882 + 3772 12389561 108151 Sema3d 4631426B19Rik sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D MGI:1860118 Mm.89313 5 5 A2 SEMA3D 223117 0 ATAAGTAGAGGCACGGACACAGC GGCCAGCATCTTAGGGGTATATT 7 6 6 1.1.2.3.6.6 BCBC-5B-0 14132614 P216962 Prr14 Enhancer P216962 Enhancer Unique Tile chr7:127260609-127261526 (+) NM_145589 + 1235 127262761 233895 Prr14 BC006909|MGC6888 proline rich 14 MGI:2384565 Mm.44183 7 7 F3 PRR14 78994 NM_175163 - 20303 127240306 71131 Zfp689 0 TAGAACCACAGCCTCTAAGCCAC GCTGGCAGAAGTAACTCTTGGAA 7 6 7 1.1.2.3.7.6 BCBC-5B-0 14132633 P218084 Ngrn ChickenHuman P218084 ChickenHuman Unique Tile chr7:80129959-80131046 (+) NM_031375 + 3686 80134732 83485 Ngrn AW552001 neugrin, neurite outgrowth associated MGI:1933212 Mm.21175 7 7 D2 NGRN 51335 NM_177765 + 10071 80119888 269954 1700111A04Rik 0 GATTCTCTTGAGACTGGCCTTGA ACCATGCCTGGCTAAAAACATAA 7 6 8 1.1.2.3.8.6 BCBC-5B-0 14132652 P218752 ProximalPromoter P218752 ProximalPromoter Unique Tile chr5:8724921-8725836 (+) 0 GGGAAGATTTGGAATGCTTTTTC TGGGCATTCTACAGTTTCCAGTT 7 6 9 1.1.2.3.9.6 BCBC-5B-0 14132671 P219874 Herc4 Enhancer P219874 Enhancer Unique Tile chr10:62642783-62643743 (+) NM_026101 + 1588 62641195 67345 Herc4 1700056O17Rik|4921531D01Rik|mKIAA1593 hect domain and RLD 4 MGI:1914595 Mm.234437 10 10 B4 HERC4 26091 0 ATTTTCATAATCTCGGGCACTGA CCCTCATCTTTAAACTCACCCCT 7 6 10 1.1.2.3.10.6 BCBC-5B-0 14132690 P220714 Tcl1b5 Enhancer P220714 Enhancer Unique Tile chr12:105575141-105576046 (+) NM_013776 + 1361 105577407 27382 Tcl1b5 D12Ertd644e T-cell leukemia/lymphoma 1B, 5 MGI:1351635 Mm.241933 12 12 E|12 51.0 cM NM_013773 + 14383 105560758 27379 Tcl1b1 0 TCAGTGCTTAAGAACACTGGCTG AGCCACATAAACCCTTTCTCCTC 7 6 11 1.1.2.3.11.6 BCBC-5B-0 14132709 P221464 Olfr110 ProximalPromoter P221464 ProximalPromoter Unique Tile chr17:37105841-37106742 (+) NM_146328 + 37 37106705 258325 Olfr110 MOR249-2 olfactory receptor 110 MGI:2177493 Mm.171265 17 17 B1 OR5V1 81696 NM_008204 - 14259 37091582 14990 H2-M2 0 TTCTATCTCATGGGTTCTTGGGA TGAATTCAGATGGAGCTGTTTGA 7 6 12 1.1.2.3.12.6 BCBC-5B-0 14132728 P222586 Rnf17 Enhancer P222586 Enhancer Unique Tile chr14:55360637-55361709 (+) NM_001033043 + 3830 55356807 30054 Rnf17 MMIP-2|Mmip2|TDRD4 ring finger protein 17 MGI:1353419 Mm.287783 14 14 C3 RNF17 56163 NM_138652 + 41459 55319178 192113 Atp12a 0 TATATCCTGGCAGGGTGGTACAT AATTGTGGATGAACAGCTTTTGG 7 6 13 1.1.2.3.13.6 BCBC-5B-0 14132747 P223336 St8sia2 Enhancer P223336 Enhancer Unique Tile chr7:73885854-73886932 (-) NM_009181 - 242 73887174 20450 St8sia2 AI323367|ST8SiaII|STX|Siat8b ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 MGI:106020 Mm.4954 7 7 D1 ST8SIA2 8128 1 TCAGAGATCGAAGAAGAAATCGG CTCAGGGACCTCACCCTTTTACT 7 6 14 1.1.2.3.14.6 BCBC-5B-0 14132766 P224176 Zmat2 Enhancer P224176 Enhancer Unique Tile chr18:36915231-36916296 (+) NM_025594 + 3600 36919896 66492 Zmat2 2610510D14Rik|2900082I05Rik zinc finger, matrin type 2 MGI:1913742 Mm.251155 18 18 B2 ZMAT2 153527 NM_080636 + 5978 36909253 70791 Harsl 0 CCTGAGGTTATTTGGAATTGCTG ACATGGTAGAAATGAGCCACGAT 7 6 15 1.1.2.3.15.6 BCBC-5B-0 14132785 P225298 Ube2q2 ProximalPromoter P225298 ProximalPromoter Unique Tile chr9:54946525-54947538 (+) NM_180600 + 24 54947514 109161 Ube2q2 3010021M21Rik|MGC19370 ubiquitin-conjugating enzyme E2Q (putative) 2 MGI:2388672 Mm.207894 9 9 B UBE2Q2 92912 0 TAGAAAGTTGGTCTTGCCTCTGG CTGCCTTTGTAACCGACTCCAC 7 6 16 1.1.2.3.16.6 BCBC-5B-0 14132804 P226730 Mrgprb5 Pdx1 P226730 Pdx1 Unique Tile chr7:47987412-47988327 (+) NM_207538 - 48680 48037007 404239 Mrgprb5 MrgB5 MAS-related GPR, member B5 MGI:3033121 Mm.377927 7 7 B4 0 TCCAGAATGAGGACATATCAGGT CCAGCTGCACAATCTGCTACATA 7 6 17 1.1.2.3.17.6 BCBC-5B-0 14132823 P226796 Mcf2l Pdx1 P226796 Pdx1 Unique Tile chr8:12949907-12950824 (+) NM_178076 + 33973 12915934 17207 Mcf2l C130040G20Rik|Dbs|Ost|Ost gamma|mKIAA0362 mcf.2 transforming sequence-like MGI:103263 Mm.334413 8 8 A2 MCF2L 23263 0 TGAAGTTCTTCCATGGGTTGTTT CTGTATATCCCTGGTGAGATGGC 7 6 18 1.1.2.3.18.6 BCBC-5B-0 14132842 P003027 Blank P003027 Buffer Control Negative Blank 7 6 19 1.1.2.3.19.6 BCBC-5B-0 14132861 P003088 Blank P003088 Buffer Control Negative Blank 7 6 20 1.1.2.3.20.6 BCBC-5B-0 14132501 P211514 PufferfishHuman P211514 PufferfishHuman Unique Tile chr13:78360960-78361944 (+) 0 ATCGCATCTCATCTTTGGAACTC ACAACTGTCCAAGCATCTCTTCC 7 7 1 1.1.2.3.1.7 BCBC-5B-0 14132520 P212354 miRNA P212354 miRNA Unique Tile chr1:94684785-94685697 (-) mmu-mir-149 0 AGGAACTCCCAGGGGTCTACTC TGTTTACACCCTCACCGAAAAGT 7 7 2 1.1.2.3.2.7 BCBC-5B-0 14132539 P213476 Ss18 Enhancer P213476 Enhancer Unique Tile chr18:14824693-14825407 (-) NM_009280 - 362 14825769 268996 Ss18 D130059H17|Ssxt|Syt synovial sarcoma translocation, Chromosome 18 MGI:107708 Mm.31761 18 18 B1 SS18 6760 0 AGAACTTGAGAACCTTCCGCAAT AACATTCTTTCTGCACGTGTGTG 7 7 3 1.1.2.3.3.7 BCBC-5B-0 14132558 P214226 Tle1 Enhancer P214226 Enhancer Unique Tile chr4:71690702-71691674 (-) NM_011599 - 3484 71687218 21885 Tle1 C230057C06Rik|Grg1 transducin-like enhancer of split 1, homolog of Drosophila E(spl) MGI:104636 Mm.278444; Mm.388819; Mm.399716; Mm.278444; Mm.388819; Mm.399716; Mm.278444; Mm.388819; Mm.399716; Mm.278444; Mm.388819; Mm.399716; Mm.278444; Mm.388819; Mm.399716; Mm.278444; Mm.388819; Mm.399716; Mm.278444; Mm.388819; Mm.399716; Mm.278444; Mm.388819; Mm.399716; Mm.278444; Mm.388819; Mm.399716; Mm.278444; Mm.388819; Mm.399716; Mm.278444; Mm.388819; Mm.399716; Mm.278444; Mm.388819; Mm.399716; Mm.278444; Mm.388819; Mm.399716; Mm.278444; Mm.388819; Mm.399716; Mm.278444; Mm.388819; Mm.399716; Mm.278444; Mm.388819; Mm.399716; Mm.278444; Mm.388819; Mm.399716; Mm.278444; Mm.388819; Mm.399716; Mm.278444; Mm.388819; Mm.399716; Mm.278444; Mm.388819; Mm.399716; Mm.278444; Mm.388819; Mm.399716; Mm.278444; Mm.388819; Mm.399716 4 - TLE1 7088 0 GTAATCACTGCATTTCCTCCCAC GGGGAGTAGGCAGAGAAGAAAAA 7 7 4 1.1.2.3.4.7 BCBC-5B-0 14132577 P215348 Cks2 Enhancer P215348 Enhancer Unique Tile chr13:51658058-51659058 (+) NM_025415 + 207 51657851 66197 Cks2 1110038L14Rik|CKSHS2 CDC28 protein kinase regulatory subunit 2 MGI:1913447 Mm.222228 13 13 A5 CKS2 1164 0 CAGCCTTGCTTTGTGTAGTGTTG CCATATGCTAAACATTTCCATCC 7 7 5 1.1.2.3.5.7 BCBC-5B-0 14132596 P216188 Spcs1 Enhancer P216188 Enhancer Unique Tile chr14:29828294-29829377 (+) NM_026911 - 986 29830363 69019 Spcs1 1810004F21Rik signal peptidase complex subunit 1 homolog (S. cerevisiae) MGI:1916269 Mm.28852 14 14 B SPCS1 28972 NM_029626 + 1337 29830714 76485 Glt8d1 1 TTAATCCCAGCACTTGTGAGACA TTAAGGCTTGTTCTCACTCCCTG 7 7 6 1.1.2.3.6.7 BCBC-5B-0 14132615 P216938 Smox Enhancer P216938 Enhancer Unique Tile chr2:131183749-131184646 (+) NM_145533 + 366 131183383 228608 Smox B130066H01Rik|PAO|PAOh1|SMO spermine oxidase MGI:2445356 Mm.136586 2 2 F1 SMOX 54498 0 GTCTCCTTGGGACAGCTGGAG GGAGAGGAAATGCTGAGAACAGA 7 7 7 1.1.2.3.7.7 BCBC-5B-0 14132634 P218060 Hist1h1d ChickenHuman P218060 ChickenHuman Unique Tile chr13:23563491-23564482 (+) NM_145713 + 992 23562499 14957 Hist1h1d H1.3|H1D|H1f3|H1s-4 histone 1, H1d MGI:107502 Mm.247046 13 13 A2-A3 HIST1H1D 3007 NM_175655 - 4383 23559108 319157 Hist1h4f 0 GTTCATATTCCAAGAGTTTGGCG TTGATGGCTTATACCAGGTGCTT 7 7 8 1.1.2.3.8.7 BCBC-5B-0 14132653 P218728 Zfp1 ProximalPromoter P218728 ProximalPromoter Unique Tile chr8:114529221-114530293 (+) NM_001037665;NM_011742; + 87 114530206 22640 Zfp1 Fnp-1|Zfp-1|mkr-1 zinc finger protein 1 MGI:99154 Mm.4184 8 8 E1|8 57.0 cM ZFP1 162239 NM_027570 - 12226 114516995 52815 Ldhd 0 TTCCTGTCGTGATTTAACGGACT AGACATACCTGGAGGGGTCTAGC 7 7 9 1.1.2.3.9.7 BCBC-5B-0 14132672 P219568 Ptprt ProximalPromoter P219568 ProximalPromoter Unique Tile chr2:162352759-162353674 (-) NM_021464 - 171 162352588 19281 Ptprt KIAA0283|RPTP-rfo|RPTPrho|mKIAA0283 protein tyrosine phosphatase, receptor type, T MGI:1321152 Mm.235807; Mm.381206; Mm.235807; Mm.381206; Mm.235807; Mm.381206; Mm.235807; Mm.381206; Mm.235807; Mm.381206; Mm.235807; Mm.381206; Mm.235807; Mm.381206; Mm.235807; Mm.381206; Mm.235807; Mm.381206; Mm.235807; Mm.381206; Mm.235807; Mm.381206; Mm.235807; Mm.381206 2 2 H2|2 93.0 cM PTPRT 11122 1 CAAAGCAACTCCAACCCAGAG GTACACACATCGCTCTTGCACAC 7 7 10 1.1.2.3.10.7 BCBC-5B-0 14132691 P220690 Pou3f1 ProximalPromoter P220690 ProximalPromoter Unique Tile chr4:124158857-124159558 (+) NM_011141 + 397 124159955 18991 Pou3f1 Oct-6|Otf6|Scip|Test1|Tst-1|Tst1 POU domain, class 3, transcription factor 1 MGI:101896 Mm.297371; Mm.388885; Mm.297371; Mm.388885; Mm.297371; Mm.388885; Mm.297371; Mm.388885; Mm.297371; Mm.388885 4 4 D2.2|4 56.1 cM POU3F1 5453 NM_026031 - 36300 124195858 67205 Utp11l 1 CCTATTCTGCAAGTTTCCGGG ACGTTCCACACAAGCTCAATTTC 7 7 11 1.1.2.3.11.7 BCBC-5B-0 14132710 P221440 Rpp21 Enhancer P221440 Enhancer Unique Tile chr17:35867954-35868915 (-) NM_026308 - 2045 35865909 67676 Rpp21 0610037N01Rik ribonuclease P 21 subunit (human) MGI:1914926 Mm.27131 17 17 B3 RPP21 79897 NM_024468 - 8358 35877273 79263 Trim39 0 AAAAGCGTCAAGTTTGTGGAGAC AGCCCCTCGACTTCTAGACTCAT 7 7 12 1.1.2.3.12.7 BCBC-5B-0 14132729 P222562 2410066E13Rik Enhancer P222562 Enhancer Unique Tile chr6:54611459-54612540 (+) NM_026629 + 110 54611349 68235 2410066E13Rik AI448550|B230212L03Rik RIKEN cDNA 2410066E13 gene MGI:1915485 Mm.233860 6 6 B3 0 GGCGTCTCCTTCTACGTACTGTG CCAGGATCATATTTTATTGGGCA 7 7 13 1.1.2.3.13.7 BCBC-5B-0 14132748 P223402 Tas2r104 ProximalPromoter P223402 ProximalPromoter Unique Tile chr6:131651461-131652532 (-) NM_207011 - 24 131651437 387340 Tas2r104 T2R04|Tas2r4|mGR04|mt2r45 taste receptor, type 2, member 104 MGI:2681185 Mm.377903 6 6 F3|6 62.0 cM NM_020501 - 624 131653156 57252 Tas2r105 0 ATGCAGTCTGGTGTTTCAGGATT TCTGCTGGATCTGGTGTGATTTA 7 7 14 1.1.2.3.14.7 BCBC-5B-0 14132767 P224152 BC052040 ProximalPromoter P224152 ProximalPromoter Unique Tile chr2:115272148-115273139 (+) NM_207264 + 34 115273173 399568 BC052040 MGC62402 cDNA sequence BC052040 MGI:3026886 Mm.134929 2 2 E4 C15orf41 84529 0 TACGGTGACTCCATAACTTGGCT GAGAGGCGGGCTGTAGAACTATT 7 7 15 1.1.2.3.15.7 BCBC-5B-0 14132786 P225274 Olfr101 ProximalPromoter P225274 ProximalPromoter Unique Tile chr17:36908430-36909469 (-) NM_146834 - 43 36908473 258831 Olfr101 MOR250-2 olfactory receptor 101 MGI:2177484 Mm.424089 17 17 B1 NM_001011721;NM_207673; - 12966 36922435 258218; 404307 Olfr102; Olfr100 0 TATTGCGAATGCAGTAGGATTGA ACTCCCAGGAGGAGAAATTCAGT 7 7 16 1.1.2.3.16.7 BCBC-5B-0 14132805 P226706 Hcn1 Pdx1 P226706 Pdx1 Unique Tile chr13:118720055-118720970 (+) NM_010408 + 1010 118721980 15165 Hcn1 Bcng1|HAC2 hyperpolarization-activated, cyclic nucleotide-gated K+ 1 MGI:1096392 Mm.343429 13 13 D2.3|13 67.0 cM HCN1 348980 0 GCCATCGAATATCATCCTCTGAC TCCTAGGAAGGCCACTAACATCA 7 7 17 1.1.2.3.17.7 BCBC-5B-0 14132824 P227546 Pdx1 P227546 Pdx1 Unique Tile chr6:103346558-103347512 (+) 0 TCTCTAGCCCTTTCTTATTGGCA AAGCGGTTTTAGCACCCTCTTAC 7 7 18 1.1.2.3.18.7 BCBC-5B-0 14132843 P003003 Blank P003003 Buffer Control Negative Blank 7 7 19 1.1.2.3.19.7 BCBC-5B-0 14132862 P003304 Blank P003304 Buffer Control Negative Blank 7 7 20 1.1.2.3.20.7 BCBC-5B-0 14132502 P211580 PufferfishHuman P211580 PufferfishHuman Unique Tile chr2:45408413-45409434 (+) 0 TATTGGTTCCACAGCTGGAAGAT TGGACTAGCAAATCTGTGTGCAT 7 8 1 1.1.2.3.1.8 BCBC-5B-0 14132521 P212330 miRNA P212330 miRNA Unique Tile chr7:101350096-101351059 (-) mmu-mir-139 2 ATTTTGGTCTTCTCTCCTTTGGG CCTCTGTTTTCTGCCTTGTGTCT 7 8 2 1.1.2.3.2.8 BCBC-5B-0 14132540 P213452 Slc4a3 Enhancer P213452 Enhancer Unique Tile chr1:75432412-75433347 (+) NM_009208 + 2967 75429445 20536 Slc4a3 A930038D23Rik|Ae3 solute carrier family 4 (anion exchanger), member 3 MGI:109350 Mm.5053 1 1 C4|1 41.0 cM SLC4A3 6508 NM_027886 + 27719 75404693 71728 Stk11ip 0 TCTTCCTTTGTAAACGCCATGTT GCTCCCAACACTTTCATATCCAC 7 8 3 1.1.2.3.3.8 BCBC-5B-0 14132559 P214202 Tcf12 Enhancer P214202 Enhancer Unique Tile chr9:71909173-71910175 (-) NM_011544 - 4 71910179 21406 Tcf12 ALF1|HEB|HTF-4|HTF4|ME1|REB transcription factor 12 MGI:101877 Mm.171615 9 9 D|9 42.0 cM TCF12 6938 1 ACTTTAATCGGGAAGGTTGGATG GAGAACTAGCGCTGAAAAGCAGA 7 8 4 1.1.2.3.4.8 BCBC-5B-0 14132578 P215042 Cldn15 Enhancer P215042 Enhancer Unique Tile chr5:137249579-137250554 (+) NM_021719 + 1941 137252495 60363 Cldn15 2210009B08Rik|BB107105 claudin 15 MGI:1913103 Mm.87202 5 5 G2 CLDN15 24146 NM_025562 + 2849 137246730 66437 Fis1 0 AAGCTGCAGGTGATAGAAACTGG TACCAGTCCATCTGGAAAAGGAA 7 8 5 1.1.2.3.5.8 BCBC-5B-0 14132597 P216164 Senp2 Enhancer P216164 Enhancer Unique Tile chr16:21924813-21925754 (+) NM_029457 + 150 21924663 75826 Senp2 2310007L05Rik|4930538C18Rik|AI646780|AW554757|KIAA1331|SUMO-1|Smt3ip2|mKIAA1331 SUMO/sentrin specific peptidase 2 MGI:1923076 Mm.297431; Mm.393134; Mm.393285; Mm.297431; Mm.393134; Mm.393285; Mm.297431; Mm.393134; Mm.393285; Mm.297431; Mm.393134; Mm.393285; Mm.297431; Mm.393134; Mm.393285; Mm.297431; Mm.393134; Mm.393285; Mm.297431; Mm.393134; Mm.393285; Mm.297431; Mm.393134; Mm.393285; Mm.297431; Mm.393134; Mm.393285; Mm.297431; Mm.393134; Mm.393285 16 16 B1 SENP2 59343 NM_153404 - 14018 21910795 239759 Liph 1 CTAAGGTTCTCGGCACCATTCTT GATCCAGTTGGGGGAGAATAAAC 7 8 6 1.1.2.3.6.8 BCBC-5B-0 14132616 P216914 Recql4 Enhancer P216914 Enhancer Unique Tile chr15:76533661-76534601 (+) NM_058214 - 3130 76537731 79456 Recql4 - RecQ protein-like 4 MGI:1931028 Mm.18373 15 15 D3 RECQL4 9401 NM_145471 + 3392 76537993 223664 Lrrc14 0 CAAAAACTCACTTTGCAAACACG AGAAACCCCTGCTGAAGTATTCC 7 8 7 1.1.2.3.7.8 BCBC-5B-0 14132635 P218036 ChickenHuman P218036 ChickenHuman Unique Tile chr13:75459815-75460886 (-) 0 CTCAGCCTCGATACTGCAAAAGT TGTTATGACCAGATGGGAACACA 7 8 8 1.1.2.3.8.8 BCBC-5B-0 14132654 P218794 Chrm5 ProximalPromoter P218794 ProximalPromoter Unique Tile chr2:112281603-112282589 (-) NM_205783 - 5 112281608 213788 Chrm5 M5R|m5 cholinergic receptor, muscarinic 5 MGI:109248 Mm.297624 2 2 E3 CHRM5 1133 NM_028844 + 11213 112293802 74268 Aven 1 TATGAAAGATGCTCAGGCATTGA TTCCATCCTGGCTCAAGAAATTA 7 8 9 1.1.2.3.9.8 BCBC-5B-0 14132673 P219544 Gria1 Enhancer P219544 Enhancer Unique Tile chr11:56856946-56857848 (+) NM_008165 + 1568 56855378 14799 Gria1 2900051M01Rik|AI853806|Glr-1|Glr1|GluR-A|GluRA|Glur-1|Glur1|HIPA1 glutamate receptor, ionotropic, AMPA1 (alpha 1) MGI:95808 Mm.4920 11 11 B1.3|11 31.0 cM GRIA1 2890 0 GCTGTGGAGAAACTTGCTTTGTT GGTCTTAAGAGTGCCAGGATGTG 7 8 10 1.1.2.3.10.8 BCBC-5B-0 14132692 P220666 Gnat1 Enhancer P220666 Enhancer Unique Tile chr9:107540339-107541270 (-) NM_008140 - 2623 107537716 14685 Gnat1 Gnat-1|Tralpha|transducin guanine nucleotide binding protein, alpha transducing 1 MGI:95778 Mm.284853 9 9 F1|9 59.0 cM GNAT1 2779 NM_023805 - 13270 107527069 76257 Slc38a3 1 GTGTCGCAATTGGGTATTCTCAT CTGACCAACACGGGTCTAAGTTC 7 8 11 1.1.2.3.11.8 BCBC-5B-0 14132711 P221416 ProximalPromoter P221416 ProximalPromoter No Hits Tile 0 gtcgattgaaaatggaggatgtc gtccatgcaaatagttctccgtc 7 8 12 1.1.2.3.12.8 BCBC-5B-0 14132730 P222256 Ublcp1 ProximalPromoter P222256 ProximalPromoter Unique Tile chr11:44314058-44314971 (-) NM_024475 - 3622 44310436 79560 Ublcp1 8430435I17Rik|BC002236|MGC117826|MGC7513 ubiquitin-like domain containing CTD phosphatase 1 MGI:1933105 Mm.338784; Mm.397554; Mm.338784; Mm.397554; Mm.338784; Mm.397554; Mm.338784; Mm.397554; Mm.338784; Mm.397554; Mm.338784; Mm.397554; Mm.338784; Mm.397554; Mm.338784; Mm.397554; Mm.338784; Mm.397554; Mm.338784; Mm.397554; Mm.338784; Mm.397554 11 11 A3.1 UBLCP1 134510 NM_028862 + 47415 44362386 74315 3732413I11Rik 0 TATCCCAGGGCTGGAACTAGAAT CGAGTGTTTTCCAGACTTTGACC 7 8 13 1.1.2.3.13.8 BCBC-5B-0 14132749 P223378 Rap1b ProximalPromoter P223378 ProximalPromoter Unique Tile chr10:117249234-117250135 (-) NM_024457 - 267 117248967 215449 Rap1b 2810443E11Rik RAS related protein 1b MGI:894315 Mm.233009; Mm.392481; Mm.392484; Mm.233009; Mm.392481; Mm.392484; Mm.233009; Mm.392481; Mm.392484; Mm.233009; Mm.392481; Mm.392484; Mm.233009; Mm.392481; Mm.392484; Mm.233009; Mm.392481; Mm.392484; Mm.233009; Mm.392481; Mm.392484; Mm.233009; Mm.392481; Mm.392484; Mm.233009; Mm.392481; Mm.392484; Mm.233009; Mm.392481; Mm.392484; Mm.233009; Mm.392481; Mm.392484; Mm.233009; Mm.392481; Mm.392484; Mm.233009; Mm.392481; Mm.392484; Mm.233009; Mm.392481; Mm.392484; Mm.233009; Mm.392481; Mm.392484; Mm.233009; Mm.392481; Mm.392484; Mm.233009; Mm.392481; Mm.392484; Mm.233009; Mm.392481; Mm.392484 10 10 D2 RAP1B 5908 2 TTACTCGCTCACTTAACTCAGGT CTGTCCGACATAATCGGTGTCAG 7 8 14 1.1.2.3.14.8 BCBC-5B-0 14132768 P224128 Col4a2 ProximalPromoter P224128 ProximalPromoter Unique Tile chr8:11311829-11312553 (+) NM_009932 + 442 11312995 12827 Col4a2 AU019502|Col4a-2|MGC7371|canstatin procollagen, type IV, alpha 2 MGI:88455 Mm.181021 8 8 A1.1|8 5.0 cM COL4A2 1284 NM_009931 - 108 11312661 12826 Col4a1 0 AGTTTCGCTTTGGTTTCACACTC GTCTGGCTTCTGCTGCTCTTC 7 8 15 1.1.2.3.15.8 BCBC-5B-0 14132787 P225250 Nnat ProximalPromoter P225250 ProximalPromoter Unique Tile chr2:157250563-157251529 (+) NM_010923;NM_180960; + 34 157251563 18111 Nnat 5730414I02Rik|AW107673|Peg5 neuronatin MGI:104716 Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330; Mm.233903; Mm.34330 2 2 H1|2 88.0 cM NNAT 4826 NM_016916 - 6237 157257766 53619 Blcap 0 AATACTATTTGGCCTCTGTGCCA CCTTAAGTACCCTCTTGCCACCT 7 8 16 1.1.2.3.16.8 BCBC-5B-0 14132806 P226772 Pdx1 P226772 Pdx1 Unique Tile chr12:108558807-108559724 (+) 0 TTGTGGCCAGGAATATTTTGTCT GGCCTGCAGTCCTTGTTAAGTT 7 8 17 1.1.2.3.17.8 BCBC-5B-0 14132825 P227522 Pdx1 P227522 Pdx1 Unique Tile chr5:141413574-141414526 (+) 0 CTTACTCGCTGAACCACTGTGTG CAGGCACATACATGCTTTCAAAC 7 8 18 1.1.2.3.18.8 BCBC-5B-0 14132844 P002979 Blank P002979 Buffer Control Negative Blank 7 8 19 1.1.2.3.19.8 BCBC-5B-0 14132863 P003304 Blank P003304 Buffer Control Negative Blank 7 8 20 1.1.2.3.20.8 BCBC-5B-0 14132503 P211556 PufferfishHuman P211556 PufferfishHuman Unique Tile chr14:96696998-96697940 (+) 0 GTTCTGCCAGGAAATACTGTTGG TCCCCTATATTAGCACAGCCAAA 7 9 1 1.1.2.3.1.9 BCBC-5B-0 14132522 P212306 miRNA P212306 miRNA Unique Tile chr12:110189263-110190250 (+) mmu-mir-134 0 CAGTCAAGGAAGCTAAACAGGGA GTGACCAACATCAGAATCCCTTC 7 9 2 1.1.2.3.2.9 BCBC-5B-0 14132541 P213428 Sfrs5 Enhancer P213428 Enhancer Unique Tile chr12:81867075-81867984 (+) NM_009159 + 1652 81865423 20384 Sfrs5 MGC96781 splicing factor, arginine/serine-rich 5 (SRp40, HRS) MGI:98287 Mm.346181; Mm.43331; Mm.346181; Mm.43331; Mm.346181; Mm.43331; Mm.346181; Mm.43331; Mm.346181; Mm.43331; Mm.346181; Mm.43331; Mm.346181; Mm.43331; Mm.346181; Mm.43331; Mm.346181; Mm.43331; Mm.346181; Mm.43331; Mm.346181; Mm.43331; Mm.346181; Mm.43331 12 12 D2 SFRS5 6430 NM_011387 - 18848 81886832 20493 Slc10a1 2 AGCTCCTACAGTGATCAGTTGGC AAAGGTTACTTCCCCAGCTTGTC 7 9 3 1.1.2.3.3.9 BCBC-5B-0 14132560 P214268 Wfs1 Enhancer P214268 Enhancer Unique Tile chr5:37273932-37274928 (-) NM_011716 - 2230 37277158 22393 Wfs1 AI481085|wolframin Wolfram syndrome 1 homolog (human) MGI:1328355 Mm.20916 5 5 B3 WFS1 7466 0 GTGACCTTGTCTTGAGGGTCAGT TTGCCTAGTGTCAAAGAGAACCC 7 9 4 1.1.2.3.4.9 BCBC-5B-0 14132579 P215018 Med12 Enhancer P215018 Enhancer Unique Tile chrX:97477752-97478769 (+) NM_021521 + 140 97477612 59024 Med12 230kDa|Mopa|OPA-1|Tnrc11|Trap230 mediator of RNA polymerase II transcription, subunit 12 homolog (yeast) MGI:1926212 Mm.20873 X X C2 MED12 9968 NM_013563 - 6827 97470925 16186 Il2rg 0 CTGGAAGAATCTGAGGAGCAAAA AATACTCTATCCCCTGCCTCCAC 7 9 5 1.1.2.3.5.9 BCBC-5B-0 14132598 P216140 Armet Enhancer P216140 Enhancer Unique Tile chr9:106753231-106754157 (-) NM_029103 - 3192 106750039 74840 Armet 3230402M22Rik|AA407711|AA408789|D17914 arginine-rich, mutated in early stage tumors Mm.29778 9 9 59.7 cM 0 GGGAGATACCTAAGGGGTCATTG TGCAGGAGGAAGAAAGCAACTAC 7 9 6 1.1.2.3.6.9 BCBC-5B-0 14132617 P216890 Ubl4 Enhancer P216890 Enhancer Unique Tile chrX:70622459-70623377 (-) NM_145405 - 1212 70621247 27643 Ubl4 DXHXS254E|DXS254E|DXS254Eh|Gdx ubiquitin-like 4 MGI:95049 Mm.3979 X X A7.3|X 29.9 cM UBL4A 8266 NM_145406 - 2599 70625976 214601 Slc10a3 0 TGATTTCCCTGAGAAGAGTGAGG CCTGACTCCCACTAGGATGAAGA 7 9 7 1.1.2.3.7.9 BCBC-5B-0 14132636 P217730 Dpy19l3 Enhancer P217730 Enhancer Unique Tile chr7:35461845-35462804 (-) NM_178704 - 307 35463111 233115 Dpy19l3 6030410G08|9330164H19Rik dpy-19-like 3 (C. elegans) MGI:2443952 Mm.257808 7 7 B2 DPY19L3 147991 0 CAGGAATTGCCTTAGGGTCTCTT ACTAACTGTGGGATTTGTTGCGT 7 9 8 1.1.2.3.8.9 BCBC-5B-0 14132655 P218770 Pik3c3 ProximalPromoter P218770 ProximalPromoter Unique Tile chr18:30414792-30415734 (+) NM_181414 + 147 30415881 225326 Pik3c3 5330434F23Rik|Vps34 phosphoinositide-3-kinase, class 3 MGI:2445019 Mm.194127 18 18 B1 PIK3C3 5289 0 CACTCCTTGAACCTGTGTGTCTG AGGAAGCATGGCTTATGTGGTTA 7 9 9 1.1.2.3.9.9 BCBC-5B-0 14132674 P219520 Nalp9a ProximalPromoter P219520 ProximalPromoter Unique Tile chr7:26242872-26243776 (+) NM_194056 + 15795 26259571 233001 Nalp9a D7Ertd565e|Nalp-theta NACHT, LRR and PYD containing protein 9a MGI:2675292 Mm.11889 7 7 A3|7 7.0 cM 0 TCAGGTTTCCTGTAGACACATGG CTGTATACCTCGCCCTTTCATTG 7 9 10 1.1.2.3.10.9 BCBC-5B-0 14132693 P220642 Olfr1449 ProximalPromoter P220642 ProximalPromoter Unique Tile chr19:13000854-13001831 (+) NM_146303 + 73 13001758 258300 Olfr1449 MOR202-34 olfactory receptor 1449 MGI:3031283 Mm.391211 19 - NM_146701 - 13528 12987326 258696 Olfr1448 0 GGAATAACGTGCAGAAAGGTCAG GCAGCTCTGGGATATCAGTCAAT 7 9 11 1.1.2.3.11.9 BCBC-5B-0 14132712 P221482 Olfr1305 ProximalPromoter P221482 ProximalPromoter Unique Tile chr2:111674649-111675556 (-) NM_146401 - 43 111674692 258396 Olfr1305 MOR245-8 olfactory receptor 1305 MGI:3031139 Mm.377480 2 - NM_001011803 - 38211 111713767 258023 Olfr1306 0 ACATTCCTAATACTGCCCCCATT AACAGCACAAATTCAGACACTGC 7 9 12 1.1.2.3.12.9 BCBC-5B-0 14132731 P222232 2410129H14Rik ProximalPromoter P222232 ProximalPromoter Unique Tile chr14:97929418-97930344 (-) NM_175245 - 173 97929245 76789 2410129H14Rik AI120158 RIKEN cDNA 2410129H14 gene MGI:1924039 Mm.38912 14 14 E2.1 NM_175265 + 92 97929510 77744 6720463M24Rik 0 CGAATCCTCTTGGGGTTAAGTTT GAGGAGTTAGCGTTCGAATTCAC 7 9 13 1.1.2.3.13.9 BCBC-5B-0 14132750 P223354 Usp50 Enhancer P223354 Enhancer Unique Tile chr2:126478876-126479919 (-) NM_029163 - 3991 126474885 75083 Usp50 1700086G18Rik|4930511O11Rik ubiquitin specific peptidase 50 MGI:1922333 Mm.389373 2 2 F2 USP50 373509 0 CTGGTGGAGACCAGAAGAGTGTT GGTGAGTTCTTGGAGATGGCTTA 7 9 14 1.1.2.3.14.9 BCBC-5B-0 14132769 P224104 Sigirr Enhancer P224104 Enhancer Unique Tile chr7:140947419-140948493 (-) NM_023059 - 1192 140946227 24058 Sigirr AI256711|MGC102426|TIR8 single immunoglobulin and toll-interleukin 1 receptor (TIR) domain MGI:1344402 Mm.38017 7 7 F5 SIGIRR 59307 NM_178381 - 11501 140959994 71345 Trp53i5 0 ACCTTGTGTCCAAAAAGGTGTGT CCTCCAGCTCAGAAGATCTTGAC 7 9 15 1.1.2.3.15.9 BCBC-5B-0 14132788 P224944 Olfr885 ProximalPromoter P224944 ProximalPromoter End Repeat Tile chr9:37810836-37811834 (+) NM_001011739 + 58 37811892 257885 Olfr885 MOR162-12 olfactory receptor 885 MGI:3030719 Mm.377283 9 9 A4 NM_001011798 + 13042 37797794 257996 Olfr884 1 CACACACACACACACACACACAC AGAACCCATCAACTGACCACATT 7 9 16 1.1.2.3.16.9 BCBC-5B-0 14132807 P226748 Amigo1 Pdx1 P226748 Pdx1 Unique Tile chr3:108322715-108323631 (+) NM_001004293;NM_146137; + 8287 108314428 229715 Amigo1 A|Amigo|MGC25558|ali2 adhesion molecule with Ig like domain 1 MGI:2653612 Mm.275752; Mm.397134; Mm.275752; Mm.397134; Mm.275752; Mm.397134; Mm.275752; Mm.397134; Mm.275752; Mm.397134; Mm.275752; Mm.397134; Mm.275752; Mm.397134; Mm.275752; Mm.397134; Mm.275752; Mm.397134; Mm.275752; Mm.397134; Mm.275752; Mm.397134; Mm.275752; Mm.397134; Mm.275752; Mm.397134; Mm.275752; Mm.397134; Mm.275752; Mm.397134; Mm.275752; Mm.397134 3 3 F3 AMIGO1 57463 NM_175183 - 15359 108338990 72522 Atxn7l2 0 CCAGCCTGGTCTACAAAGTGAGT CCATGGCTACTGAGGTTTGTCTT 7 9 17 1.1.2.3.17.9 BCBC-5B-0 14132826 P227498 Fblim1 Pdx1 P227498 Pdx1 Unique Tile chr4:140852744-140853694 (+) NM_133754 - 14333 140868027 74202 Fblim1 2410043F08Rik|Cal|Gt10 filamin binding LIM protein 1 MGI:1921452 Mm.286536 4 4 E1 FBLIM1 54751 NM_177163 + 34480 140818264 320456 B330016D10Rik 0 TCCAGTTTGCCACCTATGGTATT TTGCTACACAGTGAGAGTCTGCC 7 9 18 1.1.2.3.18.9 BCBC-5B-0 14132845 P002955 Blank P002955 Buffer Control Negative Blank 7 9 19 1.1.2.3.19.9 BCBC-5B-0 14132864 P003256 Blank P003256 Buffer Control Negative Blank 7 9 20 1.1.2.3.20.9 BCBC-5B-0 14132504 P211532 PufferfishHuman P211532 PufferfishHuman Unique Tile chr4:147652313-147653369 (-) 2 GGTGTGAGCACATCACTACCAAG GAATGGAGGTCCCCTACAGAGTT 7 10 1 1.1.2.3.1.10 BCBC-5B-0 14132523 P212282 miRNA P212282 miRNA Unique Tile chr18:10785719-10786629 (-) mmu-mir-133a-1 0 CAGTTGTTTCAATTGTGTCTCGC CCACTTCTGCTTGTGGTTCTTTT 7 10 2 1.1.2.3.2.10 BCBC-5B-0 14132542 P213122 Eif3s12 Enhancer P213122 Enhancer Unique Tile chr7:28689683-28690586 (+) NM_028659 - 12 28690574 73830 Eif3s12 1200009C21Rik|eIF3K eukaryotic translation initiation factor 3, subunit 12 MGI:1921080 Mm.29714 7 7 B1 EIF3S12 27335 NM_008279 + 1027 28691613 26411 Map4k1 0 GGCTAGTCCTTAGGGACCACTGT GTTCCGCTTCCTACACCTCTCTT 7 10 3 1.1.2.3.3.10 BCBC-5B-0 14132561 P214244 Tuba2 Enhancer P214244 Enhancer Unique Tile chr15:98761311-98762224 (-) NM_011654 - 197 98762421 22143 Tuba2 MGC102558|MGC117866|MGC118411 tubulin, alpha 2 MGI:107804 Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903; Mm.379036; Mm.422903 15 15 F1 NM_029098 - 15179 98746132 74775 Lmbr1l 0 CACTCGGATCTTACTGGAACCC GACAAGTTCTGCATGTTCCACAC 7 10 4 1.1.2.3.4.10 BCBC-5B-0 14132580 P214994 Mlxipl Enhancer P214994 Enhancer Unique Tile chr5:135392603-135393508 (+) NM_021455 + 1064 135391539 58805 Mlxipl ChREBP|WS-bHLH|Wbscr14 MLX interacting protein-like MGI:1927999 Mm.34213 5 5 G2 MLXIPL 51085 NM_177574 - 29710 135362893 194309 Vps37d 0 GAACCCTGTAACTACGGCTCAGA CCTCCACGTGCTCTTTCTCTAAA 7 10 5 1.1.2.3.5.10 BCBC-5B-0 14132599 P216116 Chic2 Enhancer P216116 Enhancer Unique Tile chr5:75330121-75331111 (-) NM_028850 - 3808 75326313 74277 Chic2 1700081B18Rik|4930502K01Rik|BTL cysteine-rich hydrophobic domain 2 MGI:1921527 Mm.239814 5 5 D CHIC2 26511 NM_133256 + 26186 75357297 14843 Gsh2 0 CTTTCTTCCCCAATTTGCTTCTT CATATAGCCCCAAGATTTCTCCC 7 10 6 1.1.2.3.6.10 BCBC-5B-0 14132618 P216956 Mobk1b Enhancer P216956 Enhancer Unique Tile chr6:83289079-83289991 (+) NM_145571 + 1717 83291708 232157 Mobk1b 4022402H07Rik|MGC6884|MOB1|MOB4B MOB1, Mps One Binder kinase activator-like 1B (yeast) MGI:2442631 Mm.29500 6 6 C3 MOBK1B 55233 NM_008638 - 5817 83283262 17768 Mthfd2 1 AAGGAAAGAGGCCTTGTTTTGTC CCAGCCTGGTCTACAAAGTGAGT 7 10 7 1.1.2.3.7.10 BCBC-5B-0 14132637 P217706 Cdc42se2 Enhancer P217706 Enhancer Unique Tile chr11:54629879-54630784 (-) NM_178626 - 231 54631015 72729 Cdc42se2 2810404F18Rik|AA408783|AA536669|SPEC2 CDC42 small effector 2 MGI:1919979 Mm.29476 11 11 B1.3 CDC42SE2 56990 1 CGTATGGTTCTCTTCATTCTCCG AAATGCACCCCAAACATCTTTCT 7 10 8 1.1.2.3.8.10 BCBC-5B-0 14132656 P218746 ProximalPromoter P218746 ProximalPromoter No Hits Tile 1 tttcagtaaggatcattgtgccc gcatcctcccctccgttatac 7 10 9 1.1.2.3.9.10 BCBC-5B-0 14132675 P219496 Actc1 Enhancer P219496 Enhancer Unique Tile chr2:113748283-113749187 (-) NM_009608 - 4031 113744252 11464 Actc1 Actc-1 actin, alpha, cardiac MGI:87905 Mm.686 2 2 E4|2 64.0 cM ACTC 70 NM_010290 - 43223 113705060 14617 Gja9 0 GCTTGTGGGGAGGAATTAAGTGT ATCGCTGTTCATTTCCACAGTTT 7 10 10 1.1.2.3.10.10 BCBC-5B-0 14132694 P220336 Ifi202b ProximalPromoter P220336 ProximalPromoter Inter Repeats Tile chr1:175819319-175820307 (-) NM_011940;NM_008327; - 70 175819389 26388 Ifi202b Ifbip-1|Ifi202|Ifi202a interferon activated gene 202B Mm.218770 1 1 H3 NM_008328 - 40207 175779112 15950 Ifi203 0 GAATTTCAAAAGGCAGAGAAGCA TGCTCTCTATAGAACAGGGGCAG 7 10 11 1.1.2.3.11.10 BCBC-5B-0 14132713 P221458 Mybpc3 Enhancer P221458 Enhancer Unique Tile chr2:90915907-90916821 (+) NM_008653 + 2187 90919008 17868 Mybpc3 - myosin binding protein C, cardiac MGI:102844 Mm.10728 2 - MYBPC3 4607 NM_011355 + 18190 90897717 20375 Sfpi1 0 CTCACAGGCAGCAAGAAAAAGAT TGGATGGTGTCTCACTCAGAAGA 7 10 12 1.1.2.3.12.10 BCBC-5B-0 14132732 P222208 Tnfrsf4 Enhancer P222208 Enhancer Unique Tile chr4:154852469-154853454 (+) NM_011659 + 4040 154857494 22163 Tnfrsf4 ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1 tumor necrosis factor receptor superfamily, member 4 MGI:104512 Mm.13885 4 4 E2|4 79.4 cM TNFRSF4 7293 NM_011341 + 15756 154836713 20318 Sdf4 0 GGTAGCCTAGCACCCTTTGTCTT TGTGTTTTCTTTTCTGGTCCCAT 7 10 13 1.1.2.3.13.10 BCBC-5B-0 14132751 P223330 Mnd1 ProximalPromoter P223330 ProximalPromoter Unique Tile chr3:84241778-84242756 (-) NM_029797 - 138 84241640 76915 Mnd1 2610034E18Rik|AI591601|Gaj meiotic nuclear divisions 1 homolog (S. cerevisiae) MGI:1924165 Mm.274829 3 3 F1 MND1 84057 0 GAAGCCCTGTCCTGAAAACCT AAATAATGGGCAGGTCCAGTAGG 7 10 14 1.1.2.3.14.10 BCBC-5B-0 14132770 P224170 Tdo2 Enhancer P224170 Enhancer Unique Tile chr3:82060699-82061602 (-) NM_019911 - 53 82061655 56720 Tdo2 AA407491|TDO|TO tryptophan 2,3-dioxygenase MGI:1928486 Mm.258622 3 3 E3 TDO2 6999 NM_021370 + 21246 82082848 58170 Accn5 0 GCAGGAAACAGTGTAGGGTGAGT TGGCGGGTTTTACATTCATTATC 7 10 15 1.1.2.3.15.10 BCBC-5B-0 14132789 P224920 D5Ertd40e ProximalPromoter P224920 ProximalPromoter Unique Tile chr5:113995745-113996671 (+) NM_001010825 + 130 113996801 231630 D5Ertd40e Hype|MGC117722 DNA segment, Chr 5, ERATO Doi 40, expressed MGI:1098550 Mm.21926; Mm.404824; Mm.21926; Mm.404824; Mm.21926; Mm.404824; Mm.21926; Mm.404824; Mm.21926; Mm.404824; Mm.21926; Mm.404824; Mm.21926; Mm.404824; Mm.21926; Mm.404824; Mm.21926; Mm.404824 5 5 F HYPE 11153 NM_016926 - 35968 114032639 53890 Sart3 0 GACACCACCAAGTCAGTCTGCTA TAGAGCTAGCTAGAGCATCCCCC 7 10 16 1.1.2.3.16.10 BCBC-5B-0 14132808 P226724 Pdx1 P226724 Pdx1 Unique Tile chr6:112855061-112855976 (+) 0 TGTCTGAGAGACTACTGGTTGGC CCCTTCCCATTCACTCATTTCTA 7 10 17 1.1.2.3.17.10 BCBC-5B-0 14132827 P227474 Pdx1 P227474 Pdx1 Unique Tile chr6:49833275-49834223 (+) 1 TCTGGGTCTTAGAGCCTGTATGC GGGACGACTGCATTTTCTGTATC 7 10 18 1.1.2.3.18.10 BCBC-5B-0 14132846 P227450 Pdx1 P227450 Pdx1 Unique Tile chr1:116803025-116803972 (+) 0 TTTTAATTAATGGCCCAGTGTGG CAGCACAGCTCTAGGATGTTCAA 7 10 19 1.1.2.3.19.10 BCBC-5B-0 14132865 P003256 Blank P003256 Buffer Control Negative Blank 7 10 20 1.1.2.3.20.10 BCBC-5B-0 14132505 P211508 Nr2f1 PufferfishHuman P211508 PufferfishHuman Unique Tile chr13:78647485-78648484 (+) NM_010151 - 13934 78662418 13865 Nr2f1 COUP-TF1|COUP-TFI|COUPTFA|EAR3|Erbal3|MGC118474|SVP44|Tcfcoup1 nuclear receptor subfamily 2, group F, member 1 MGI:1352451 Mm.14297 13 13 C2|13 45.0 cM NR2F1 7025 0 TACTGGTAGGCGTCTCTCTCACC AGACTGCACGTGGTTTCAATTTT 7 11 1 1.1.2.3.1.11 BCBC-5B-0 14132524 P212348 miRNA P212348 miRNA Unique Tile chr8:110439181-110440107 (+) mmu-mir-140 0 GAACATGAAACCTTACGACCTGC GCTAGGACTCTCTGCCTGTTGTC 7 11 2 1.1.2.3.2.11 BCBC-5B-0 14132543 P213098 Hbb-b2 Enhancer P213098 Enhancer Duplication Tile chr7:103686689-103687598 (-) NM_016956 - 126 103687724 15130 Hbb-b2 AI036344 hemoglobin, beta adult minor chain Mm.288567 7 7 E3|7 50.0 cM NM_008220 - 146 103687744 15129 Hbb-b1 0 GTTGGTATCCAGGTTACAAGGCA TGCAACCTTAAACTGCTGACAAA 7 11 3 1.1.2.3.3.11 BCBC-5B-0 14132562 P214220 Myo18a Enhancer P214220 Enhancer Unique Tile chr11:77596669-77597741 (+) NM_011586 + 3210 77593459 360013 Myo18a MyoPDZ|MysPDZ myosin XVIIIa MGI:2667185 Mm.341248; Mm.430870; Mm.341248; Mm.430870; Mm.341248; Mm.430870; Mm.341248; Mm.430870; Mm.341248; Mm.430870; Mm.341248; Mm.430870; Mm.341248; Mm.430870; Mm.341248; Mm.430870; Mm.341248; Mm.430870; Mm.341248; Mm.430870; Mm.341248; Mm.430870; Mm.341248; Mm.430870; Mm.341248; Mm.430870 11 11 B5 0 TTAAAGGAAGATGTGCAAGGGAA CTGCTCTCTCATGTTACCCCTGT 7 11 4 1.1.2.3.4.11 BCBC-5B-0 14132581 P214970 Slc26a3 Enhancer P214970 Enhancer Unique Tile chr12:32024431-32025410 (+) NM_021353 + 165 32024266 13487 Slc26a3 9030623B18Rik|9130013M11Rik|AV376035|Dra solute carrier family 26, member 3 MGI:107181 Mm.283281; Mm.426831; Mm.283281; Mm.426831; Mm.283281; Mm.426831; Mm.283281; Mm.426831; Mm.283281; Mm.426831; Mm.283281; Mm.426831; Mm.283281; Mm.426831 12 12 A3|12 11.0 cM SLC26A3 1811 0 TTGAATGGTTTCACCAATAGGCT GTGGGCAGGAAGAGATAACAAGA 7 11 5 1.1.2.3.5.11 BCBC-5B-0 14132600 P215810 Fbxw9 Enhancer P215810 Enhancer Unique Tile chr8:87945739-87946675 (+) NM_026791 + 3958 87950633 68628 Fbxw9 1110017H11Rik|Fbw9|MGC7678 F-box and WD-40 domain protein 9 MGI:1915878 Mm.374815 8 8 C3 NM_001039514 + 15186 87961861 330817 Dhps 0 GGAGGAGTCAGTGGGACCTAAAT GGACCCAGTAAACTTCGTCCTTT 7 11 6 1.1.2.3.6.11 BCBC-5B-0 14132619 P216932 Farp2 Enhancer P216932 Enhancer Unique Tile chr1:95342872-95343783 (+) NM_145519 + 342 95342530 227377 Farp2 AI465173|BC009153|D030026M03Rik|Fir|KIAA0793|mKIAA0793 FERM, RhoGEF and pleckstrin domain protein 2 Mm.243091; Mm.28761; Mm.243091; Mm.28761; Mm.243091; Mm.28761; Mm.243091; Mm.28761; Mm.243091; Mm.28761; Mm.243091; Mm.28761; Mm.243091; Mm.28761; Mm.243091; Mm.28761 1 1 D NM_010891 + 33423 95309449 18000 Sept2 0 AGAGTTGCTTTTGTAGATGGGCA GGCTATGGAAACTGTCTCAACAA 7 11 7 1.1.2.3.7.11 BCBC-5B-0 14132638 P217682 Egfl7 Enhancer P217682 Enhancer Unique Tile chr2:26400359-26401438 (+) NM_178444;NM_198724;NM_198725; + 1653 26403091 353156 Egfl7 VE-statin|Zneu1 EGF-like domain 7 MGI:2449923 Mm.268933 2 2 B EGFL7 51162 NM_026212 - 24781 26426219 67512 Agpat2 0 TCTTGCTAGAGGAGAGGTGGAGA GGGATGTTTCTGGGTAGCTTCTT 7 11 8 1.1.2.3.8.11 BCBC-5B-0 14132657 P218722 Klk1b16 ProximalPromoter P218722 ProximalPromoter Unique Tile chr7:44003827-44004893 (+) NM_008454 + 85 44004808 16615 Klk1b16 Klk16|mGk-16 kallikrein 1-related peptidase b16 MGI:891982 Mm.5193 7 7 B3|7 23.05 cM NM_010114 + 23103 43980724 13646 Klk1b22 0 TTAAAGATCAGGGGCATGAATGT AGAAAACTCCAAGTTCCCCGTAG 7 11 9 1.1.2.3.9.11 BCBC-5B-0 14132676 P219562 Olfr536 ProximalPromoter P219562 ProximalPromoter Unique Tile chr7:140388858-140389884 (+) NM_146520 - 30220 140358638 258513 Olfr536 MOR252-1|MOR252-4 olfactory receptor 536 MGI:3030370 Mm.261779 7 - NM_001011867 + 35590 140425474 258201 Olfr538 0 AGTTGGATGAGAGGGGTAAGAGG CTTGCAGCACAAACTCTGTCACT 7 11 10 1.1.2.3.10.11 BCBC-5B-0 14132695 P220312 Il5 ProximalPromoter P220312 ProximalPromoter Unique Tile chr11:53563297-53564310 (+) NM_010558 + 94 53564216 16191 Il5 Il-5 interleukin 5 MGI:96557 Mm.4461 11 11 A5/B1|11 29.2 cM IL5 3567 NM_009012 - 12577 53550720 19360 Rad50 0 AAGCAGTACAGGAAGGAGCCTCT CCAGACACAGCTGAGAGTCAGAA 7 11 11 1.1.2.3.11.11 BCBC-5B-0 14132714 P221434 Anapc13 ProximalPromoter P221434 ProximalPromoter Unique Tile chr9:102481241-102482173 (+) NM_181394 + 30 102482143 69010 Anapc13 1810004D07Rik|APC13|SWM1 anaphase promoting complex subunit 13 MGI:1916260 Mm.2000 9 9 F1 ANAPC13 25847 1 AGCCTGGTCTACACTGCAAGTTC CGAAAAACCCTTACCCACTGC 7 11 12 1.1.2.3.12.11 BCBC-5B-0 14132733 P222184 Gpr152 ProximalPromoter P222184 ProximalPromoter Unique Tile chr19:4138978-4139881 (+) NM_206973 + 83 4139798 269053 Gpr152 A930009H15Rik|Gm673 G protein-coupled receptor 152 MGI:2685519 Mm.131677 19 19 A GPR152 390212 NM_144532 - 272 4139609 73660 Cabp4 0 AGCTATCTGATGTGAGGTCTGCC ACAGATGGGGAAACTGAGACTTG 7 11 13 1.1.2.3.13.11 BCBC-5B-0 14132752 P223024 B930008K04Rik ProximalPromoter P223024 ProximalPromoter Unique Tile chrX:130325055-130326088 (-) NM_175446 - 63 130324992 215693 B930008K04Rik A230096A06|AW990744|ZMAT1 RIKEN cDNA B930008K04 gene MGI:2442284 Mm.336238; Mm.411781; Mm.336238; Mm.411781; Mm.336238; Mm.411781; Mm.336238; Mm.411781; Mm.336238; Mm.411781; Mm.336238; Mm.411781; Mm.336238; Mm.411781; Mm.336238; Mm.411781; Mm.336238; Mm.411781; Mm.336238; Mm.411781; Mm.336238; Mm.411781; Mm.336238; Mm.411781 X X E3 NM_031259 - 13937 130311118 83454 Nxf2 0 GTTATTGAGCTTTTGGGGTTCCT AAAGAGGAGGAGGAGGATGAGAA 7 11 14 1.1.2.3.14.11 BCBC-5B-0 14132771 P224146 Mia2 ProximalPromoter P224146 ProximalPromoter Unique Tile chr12:60012793-60013717 (+) NM_177321 + 94 60013811 338320 Mia2 - melanoma inhibitory activity 2 MGI:2159614 Mm.213215 12 12 C1 MIA2 117153 NM_008891 + 27797 59984996 18949 Pnn 0 CCCAGAGAGCTGGTGTAAAGTTG CGCAAGAGGAAAAAGCTGTGTAT 7 11 15 1.1.2.3.15.11 BCBC-5B-0 14132790 P224896 ProximalPromoter P224896 ProximalPromoter Unique Tile chr12:55432641-55433544 (-) 0 GTGATAACTGGGTTGCTTTCAGG AATGTGGTCCCAATGTCAATACC 7 11 16 1.1.2.3.16.11 BCBC-5B-0 14132809 P226700 Eif1ay Pdx1 P226700 Pdx1 End Repeat Tile chrX:154760373-154761287 (+) NM_025437 + 44011 154716362 66235 Eif1ay 1500010B24Rik|AI426898 eukaryotic translation initiation factor 1A, Y-linked MGI:1913485 Mm.294623 X X F4 2 TGATAAGAACCCAGAACCCACAC GTGGCTCACAACCATCTGTAATG 7 11 17 1.1.2.3.17.11 BCBC-5B-0 14132828 P227540 Ctsl Pdx1 P227540 Pdx1 Unique Tile chr13:64384310-64385264 (+) NM_009984 - 227 64385037 13039 Ctsl 1190035F06Rik|MEP|fs|nkt cathepsin L MGI:88564 Mm.930 13 13 B3|13 30.0 cM CTSL 1514 0 CTGAGATTTGCACTCAGGACCTT GCTTTTCTTACAGAACCAAGGCA 7 11 18 1.1.2.3.18.11 BCBC-5B-0 14132847 P227426 Pdx1 P227426 Pdx1 Unique Tile chr8:87444358-87445303 (+) 2 CTACAAAGGGCAGAGAAGAGCTG TCTGTCTGTCTGTCTTGCTCACC 7 11 19 1.1.2.3.19.11 BCBC-5B-0 14132866 P003172 Blank P003172 Buffer Control Negative Blank 7 11 20 1.1.2.3.20.11 BCBC-5B-0 14132506 P211202 PufferfishHuman P211202 PufferfishHuman Unique Tile chr2:115892928-115893832 (-) 0 AATGTAGAGCTCACTCGTCCCTG GACAGGTTTTGACTCTGTGCCTT 7 12 1 1.1.2.3.1.12 BCBC-5B-0 14132525 P212324 miRNA P212324 miRNA Unique Tile chr9:106008002-106008977 (+) mmu-mir-135a-1 0 ACCCATTTACAGAGGCCAATTCT GCTGTTTTTGTGTGTTTGTTTGC 7 12 2 1.1.2.3.2.12 BCBC-5B-0 14132544 P213074 Golga3 Enhancer P213074 Enhancer Unique Tile chr5:110412032-110413051 (+) NM_008146 + 3951 110417002 269682 Golga3 5330413L04|5430416E01Rik|AI449376|AW490576|Mea-2|Mea2 golgi autoantigen, golgin subfamily a, 3 MGI:96958 Mm.393008; Mm.9392; Mm.393008; Mm.9392; Mm.393008; Mm.9392; Mm.393008; Mm.9392; Mm.393008; Mm.9392; Mm.393008; Mm.9392; Mm.393008; Mm.9392; Mm.393008; Mm.9392; Mm.393008; Mm.9392; Mm.393008; Mm.9392 5 5 F|5 62.0 cM GOLGA3 2802 NM_172717 + 35855 110376177 231600 Chfr 0 ATTAGGTTTGCCATGTCATCTGG CCTCTGAGGTGACTCTTGGACAT 7 12 3 1.1.2.3.3.12 BCBC-5B-0 14132563 P214196 Gprasp1 Enhancer P214196 Enhancer Unique Tile chrX:131149456-131150394 (+) NM_001004359;NM_026081;NM_001005385; + 2680 131146776 67298 Gprasp1 2210415K24Rik|3110031O14Rik|C87852|GASP|GASP1|MGC100209 G protein-coupled receptor associated sorting protein 1 MGI:1917418 Mm.271980 X X F1 0 AAAGCACCCTGAAGCAGTACAAC CAGACAGGAGCATCTCTGGATTT 7 12 4 1.1.2.3.4.12 BCBC-5B-0 14132582 P215036 Nek7 Enhancer P215036 Enhancer Unique Tile chr1:140438800-140439775 (-) NM_021605 - 2693 140436107 59125 Nek7 AU020186 NIMA (never in mitosis gene a)-related expressed kinase 7 MGI:1890645 Mm.143817 1 1 E4|1 73.0 cM NEK7 140609 0 CCTGGGTCGCTGACAGTATAGAT GGAAAGAAACTTACGAGGGGAAA 7 12 5 1.1.2.3.5.12 BCBC-5B-0 14132601 P215786 Blvra Enhancer P215786 Enhancer Unique Tile chr2:126757918-126758988 (+) NM_026678 + 3119 126762107 109778 Blvra 0610006A11Rik|2500001N03Rik|Blvr biliverdin reductase A MGI:88170 Mm.22028 2 2 F3|2 62.0 cM BLVRA 644 0 TCTGTGGAGGATTGTCTGTTGAA CCATCACACACACAAGGCATAAT 7 12 6 1.1.2.3.6.12 BCBC-5B-0 14132620 P216908 Btf3 Enhancer P216908 Enhancer Unique Tile chr13:99420737-99421715 (-) NM_145455 - 3613 99417124 218490 Btf3 1700054E11Rik basic transcription factor 3 MGI:1202875 Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121; Mm.371688; Mm.5121 13 13 D1 BTF3 689 NM_008242 + 32696 99454411 15229 Foxd1 0 GCCTCTCAGCCAGCAAAGTATAA TGGATGGATGGTATGTTCTTTCC 7 12 7 1.1.2.3.7.12 BCBC-5B-0 14132639 P217658 Hnrpul1 Enhancer P217658 Enhancer Unique Tile chr7:25467234-25468171 (-) NM_178089;NM_144922; - 3724 25463510 232989 Hnrpul1 E130317O14Rik|E1B-AP5|E1BAP5|MGC36621|MGC78330 heterogeneous nuclear ribonucleoprotein U-like 1 MGI:2443517 Mm.254223 7 7 A3 HNRPUL1 11100 NM_009465 - 29130 25497301 26362 Axl 0 AACGCAAGGACATAGGAAAATCA GATGTGAGACGATCCCTTGAAAC 7 12 8 1.1.2.3.8.12 BCBC-5B-0 14132658 P218416 Soat1 Enhancer P218416 Enhancer Unique Tile chr1:158301004-158302021 (-) NM_009230 - 1437 158303458 20652 Soat1 8430426K15Rik|ACAT-1|Acact|ald sterol O-acyltransferase 1 MGI:104665 Mm.251199; Mm.28099; Mm.251199; Mm.28099; Mm.251199; Mm.28099; Mm.251199; Mm.28099; Mm.251199; Mm.28099; Mm.251199; Mm.28099; Mm.251199; Mm.28099; Mm.251199; Mm.28099; Mm.251199; Mm.28099; Mm.251199; Mm.28099; Mm.251199; Mm.28099; Mm.251199; Mm.28099; Mm.251199; Mm.28099; Mm.251199; Mm.28099; Mm.251199; Mm.28099; Mm.251199; Mm.28099; Mm.251199; Mm.28099; Mm.251199; Mm.28099; Mm.251199; Mm.28099 1 1 G3|1 81.6 cM SOAT1 6646 0 TTAAGGTTGAGGCTTGTGGGTAA ATGAACCACCAAGGACACTGAAT 7 12 9 1.1.2.3.9.12 BCBC-5B-0 14132677 P219538 2610020H08Rik ProximalPromoter P219538 ProximalPromoter Unique Tile chr7:119584306-119585354 (+) NM_028129;NM_001004187; + 19 119585335 434234 2610020H08Rik MGC59529 RIKEN cDNA 2610020H08 gene MGI:1919402 Mm.38237; Mm.396185; Mm.38237; Mm.396185; Mm.38237; Mm.396185; Mm.38237; Mm.396185; Mm.38237; Mm.396185; Mm.38237; Mm.396185; Mm.38237; Mm.396185; Mm.38237; Mm.396185; Mm.38237; Mm.396185; Mm.38237; Mm.396185; Mm.38237; Mm.396185; Mm.38237; Mm.396185 7 7 F3 NM_027698 - 245 119585109 71151 Exod1 0 CCAATGTAGGGATTTGGAATGAA CTCCTTTCCTCAATTTAAGCCGT 7 12 10 1.1.2.3.10.12 BCBC-5B-0 14132696 P220288 Ctso ProximalPromoter P220288 ProximalPromoter Unique Tile chr3:82017489-82018421 (+) NM_177662 + 121 82018542 229445 Ctso A330105D01Rik|A430056C07|AI118514 cathepsin O MGI:2139628 Mm.254642; Mm.402656; Mm.254642; Mm.402656; Mm.254642; Mm.402656; Mm.254642; Mm.402656; Mm.254642; Mm.402656; Mm.254642; Mm.402656; Mm.254642; Mm.402656; Mm.254642; Mm.402656; Mm.254642; Mm.402656; Mm.254642; Mm.402656; Mm.254642; Mm.402656; Mm.254642; Mm.402656 3 3 E3 CTSO 1519 NM_019911 - 43234 82061655 56720 Tdo2 0 ATTCAGATATACGCCAGGTTGGA GCATCTGGGATTTCCCTCTTACT 7 12 11 1.1.2.3.11.12 BCBC-5B-0 14132715 P221410 Kcnn2 ProximalPromoter P221410 ProximalPromoter Unique Tile chr18:45684616-45685570 (+) NM_080465 + 86 45685484 140492 Kcnn2 SK2|SKCA2 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 MGI:2153182 Mm.246319 18 18 C KCNN2 3781 0 CAACCTCTCTCACACACATGCTC GAGTCCATCTCCTGCAGGTTC 7 12 12 1.1.2.3.12.12 BCBC-5B-0 14132734 P222250 Enhancer P222250 Enhancer Unique Tile chr12:21289222-21290233 (-) 0 AGGGTTTCAGATATGATCAGCCA TGACTTTATAGCTGGGGGTTCAA 7 12 13 1.1.2.3.13.12 BCBC-5B-0 14132753 P223000 Lamc3 ProximalPromoter P223000 ProximalPromoter Unique Tile chr2:31708204-31709122 (+) NM_011836 + 167 31709289 23928 Lamc3 AI562206|AW240805 laminin gamma 3 MGI:1344394 Mm.302362 2 2 B LAMC3 10319 NM_178887 - 40190 31668014 98970 Fibcd1 0 CTTAGTGAGACAAGGTGTGGGCT GACTCGGGAACTGTGAACCTG 7 12 14 1.1.2.3.14.12 BCBC-5B-0 14132772 P224122 Egfl9 ProximalPromoter P224122 ProximalPromoter Unique Tile chr17:45759767-45760719 (+) NM_207666 + 72 45760791 106565 Egfl9 AI413481 EGF-like-domain, multiple 9 MGI:2146838 Mm.23633 17 17 B3 EGFL9 65989 NM_028751 - 13173 45746594 74094 Tjap1 0 CCGGAGAGTGCTGAGTCTATCAT TCTTCGCTACCTCTTTCAGGATG 7 12 15 1.1.2.3.15.12 BCBC-5B-0 14132791 P224872 Paqr6 ProximalPromoter P224872 ProximalPromoter Unique Tile chr3:88449447-88450416 (+) NM_198410 + 99 88450515 68957 Paqr6 1500001B10Rik progestin and adipoQ receptor family member VI MGI:1916207 Mm.256034 3 3 F1 PAQR6 79957 NM_031368 - 5061 88455477 12095 Bglap-rs1 0 TGATGAATCTACTGTCTGGGGCT GACCCTTTCTCCCATCTCAGACT 7 12 16 1.1.2.3.16.12 BCBC-5B-0 14132810 P225712 5832418A03Rik ProximalPromoter P225712 ProximalPromoter Unique Tile chr8:87015213-87016157 (+) NM_001013384 + 64 87016093 244550 5832418A03Rik Gm506 RIKEN cDNA 5832418A03 gene MGI:2685352 Mm.334654 8 8 C3 FLJ23447 79883 NM_172502 - 20335 86994878 212123 BC057552 0 CAGCTTGGCTGTCTTTCCTGTAG TCCTCCAGTGTCTGCTGTGACTA 7 12 17 1.1.2.3.17.12 BCBC-5B-0 14132829 P227516 Pdx1 P227516 Pdx1 Unique Tile chrX:75085472-75086423 (+) 0 GCAAATGGATGTATCTGGAGGAA AGGTACCATGAGGTGCTGAGAAG 7 12 18 1.1.2.3.18.12 BCBC-5B-0 14132848 P227402 Diras1 Pdx1 P227402 Pdx1 Unique Tile chr10:80431293-80432237 (+) NM_145217 - 2787 80428506 208666 Diras1 Di-Ras1|Gbts1|RIG DIRAS family, GTP-binding RAS-like 1 MGI:2183442 Mm.44995 10 10 C1 DIRAS1 148252 NM_134135 - 4804 80437041 106947 Slc39a3 0 TGGGATTAAAGGTGAGGACACAG CAAGGAAGCTTTTCAGCTTGGTA 7 12 19 1.1.2.3.19.12 BCBC-5B-0 14132867 P003076 Blank P003076 Buffer Control Negative Blank 7 12 20 1.1.2.3.20.12 BCBC-5B-0 14132507 P211178 PufferfishHuman P211178 PufferfishHuman Unique Tile chr2:115557452-115558377 (+) 0 TTTTATGCTCCGGTGTCTTCAGT CGGCCTCTTCTTGGATTTTATCT 7 13 1 1.1.2.3.1.13 BCBC-5B-0 14132526 P212300 miRNA P212300 miRNA Unique Tile chr12:110186845-110187804 (-) mmu-mir-134 0 AAGAAAACATGTCCAACTGCCAT AGAATATGTAGCCATCTGCCCAA 7 13 2 1.1.2.3.2.13 BCBC-5B-0 14132545 P213050 Gas1 Enhancer P213050 Enhancer Unique Tile chr13:60183017-60183944 (-) NM_008086 - 2946 60186890 14451 Gas1 AW554192|Gas-1 growth arrest specific 1 MGI:95655 Mm.22701 13 13 B3-C2|13 37.0 cM GAS1 2619 NM_177810 + 31149 60215093 328264 A030007L22 0 AAGTCCATCCAGCTTCAAGTGAG TTACCTCAGGCAGCAGAGAAATC 7 13 3 1.1.2.3.3.13 BCBC-5B-0 14132564 P213890 Hrb Enhancer P213890 Enhancer Unique Tile chr1:82718997-82720004 (+) NM_010472 + 468 82718529 15463 Hrb AU045498|C130049H11Rik|C85612|D730048C23Rik|RAB|Rip HIV-1 Rev binding protein MGI:1333754 Mm.380683; Mm.392569; Mm.380683; Mm.392569; Mm.380683; Mm.392569; Mm.380683; Mm.392569; Mm.380683; Mm.392569; Mm.380683; Mm.392569; Mm.380683; Mm.392569; Mm.380683; Mm.392569; Mm.380683; Mm.392569; Mm.380683; Mm.392569; Mm.380683; Mm.392569; Mm.380683; Mm.392569; Mm.380683; Mm.392569; Mm.380683; Mm.392569; Mm.380683; Mm.392569 1 1 C5 HRB 3267 0 GAGATGCTCTTGCTCTTTGGC AATTATTGGCCATGTCAACATCC 7 13 4 1.1.2.3.4.13 BCBC-5B-0 14132583 P215012 Hnrph1 Enhancer P215012 Enhancer Unique Tile chr11:50221403-50222385 (+) NM_021510 + 192 50221211 59013 Hnrph1 E430005G16Rik|Hnrnph heterogeneous nuclear ribonucleoprotein H1 MGI:1891925 Mm.21740 11 11 B1.2 HNRPH1 3187 1 GCCGCTTTCTATTGTGTGAGATG TCAAATCCAAACTCCAGCTCAAT 7 13 5 1.1.2.3.5.13 BCBC-5B-0 14132602 P215762 2900073H19Rik Enhancer P215762 Enhancer Unique Tile chr2:29653109-29654137 (+) NM_026615 + 3704 29649405 68205 2900073H19Rik - RIKEN cDNA 2900073H19 gene MGI:1915455 Mm.20273 2 2 B C9orf74 81605 NM_011989 + 28272 29624837 26569 Slc27a4 0 CTGCTTTGCTCTTGCTGTTTGTA TGTACCCACCTTTAAAAGCCTGA 7 13 6 1.1.2.3.6.13 BCBC-5B-0 14132621 P216884 Mlf2 Enhancer P216884 Enhancer Unique Tile chr6:124899536-124900445 (+) NM_145385 + 2442 124897094 30853 Mlf2 AI256856|AU018944|C77284 myeloid leukemia factor 2 MGI:1353554 Mm.29737 6 6 F2 MLF2 8079 NM_026988 - 15986 124883550 69202 2610009E16Rik 0 CCGCTGACTAGTCTTCTGGACTC TGGGATGGTAGAGAAAGCTATGC 7 13 7 1.1.2.3.7.13 BCBC-5B-0 14132640 P217724 Tfdp2 Enhancer P217724 Enhancer Unique Tile chr9:96006011-96006971 (+) NM_178667 + 312 96005699 211586 Tfdp2 A330080J22Rik|DP-3|DP3 transcription factor Dp 2 MGI:107167 Mm.390208 9 9 E4 TFDP2 7029 0 TCAGCTTGTCCTCAGGATTTCTC GGCTCTGTAGAGGGGTGTTTTCT 7 13 8 1.1.2.3.8.13 BCBC-5B-0 14132659 P218392 1300003B13Rik ProximalPromoter P218392 ProximalPromoter Unique Tile chr17:22127957-22129044 (+) NM_198003 + 78 22128966 74149 1300003B13Rik - RIKEN cDNA 1300003B13 gene MGI:1921399 Mm.30767 17 17 A3.3 0 AAATGTCCTTCCCCTTGAAAATC TCCAGAAATAACCAGGACAGGAA 7 13 9 1.1.2.3.9.13 BCBC-5B-0 14132678 P219514 Olfr786 ProximalPromoter P219514 ProximalPromoter Unique Tile chr10:128838809-128839769 (+) NM_146549 + 7 128839762 258542 Olfr786 MOR111-5 olfactory receptor 786 MGI:3030620 Mm.246629 10 10 D3 NM_001011822 + 25857 128865626 258069 Olfr787 0 CCAGAAGTCTACCCACAACACCT TTCTCATTCGGAACCCACTTTTA 7 13 10 1.1.2.3.10.13 BCBC-5B-0 14132697 P220264 Herc2 ProximalPromoter P220264 ProximalPromoter Unique Tile chr7:55917089-55918068 (+) NM_010418 + 203 55918271 15204 Herc2 D15F32S1h|D7H15F32S1|D7H15F37S1|KIAA0393|jdf2|mKIAA0393|rjs hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2 MGI:103234 Mm.20929 7 7 B5|7 27.0 cM HERC2 8924 NM_153578 - 29497 55887592 233280 Nipa1 0 CTTCAGTATGTGGAGGGACGAAG CGACTCAGCTTCCTTCTTGAGAC 7 13 11 1.1.2.3.11.13 BCBC-5B-0 14132716 P221104 Kin ProximalPromoter P221104 ProximalPromoter Unique Tile chr2:9997575-9998479 (+) NM_025280 + 15 9998464 16588 Kin Kin17 antigenic determinant of rec-A protein MGI:96676 Mm.35498 2 2 A1-A3 KIN 22944 NM_020615 - 197 9998282 11949 Atp5c1 0 ATTGTACTTCAACACGAGGGCAT ACCCTGAGCGCTACAACTACAAA 7 13 12 1.1.2.3.12.13 BCBC-5B-0 14132735 P222226 Psip1 ProximalPromoter P222226 ProximalPromoter Unique Tile chr4:82957775-82958718 (-) NM_133948 - 93 82957682 101739 Psip1 AA408851|AU015605|Ledgfa|Ledgfb|Psip2 PC4 and SFRS1 interacting protein 1 MGI:2142116 Mm.105331; Mm.271985; Mm.105331; Mm.271985; Mm.105331; Mm.271985; Mm.105331; Mm.271985; Mm.105331; Mm.271985; Mm.105331; Mm.271985; Mm.105331; Mm.271985; Mm.105331; Mm.271985; Mm.105331; Mm.271985; Mm.105331; Mm.271985; Mm.105331; Mm.271985; Mm.105331; Mm.271985; Mm.105331; Mm.271985; Mm.105331; Mm.271985; Mm.105331; Mm.271985; Mm.105331; Mm.271985; Mm.105331; Mm.271985; Mm.105331; Mm.271985; Mm.105331; Mm.271985 4 4 C3 PSIP1 11168 0 TTGCCACATCCTTACTTATTGGG AGTCCCCTAGAGCCCACAGGT 7 13 13 1.1.2.3.13.13 BCBC-5B-0 14132754 P222976 Pak4 ProximalPromoter P222976 ProximalPromoter Unique Tile chr7:28306905-28307959 (-) NM_027470 - 1 28306906 70584 Pak4 5730488L07Rik|AW555722|mKIAA1142 p21 (CDKN1A)-activated kinase 4 MGI:1917834 Mm.21876 7 7 A3 PAK4 10298 NM_175319 - 31712 28339671 101744 C330005M16Rik 0 AAGAAAAAGCCCGTGAAAAGAAC ATGTTGAATCCCCAATGAACATC 7 13 14 1.1.2.3.14.13 BCBC-5B-0 14132773 P224098 Dlx3 ProximalPromoter P224098 ProximalPromoter Unique Tile chr11:94935185-94936188 (+) NM_010055 + 36 94936224 13393 Dlx3 AV237891|Dlx-3 distal-less homeobox 3 MGI:94903 Mm.5194 11 11 D DLX3 1747 NM_007867 - 25383 94961571 13394 Dlx4 1 CATTCAGGACCCTACACTTCCAC GCCGGTTATAGACTCAATGTTGG 7 13 15 1.1.2.3.15.13 BCBC-5B-0 14132792 P224938 2610009E16Rik ProximalPromoter P224938 ProximalPromoter Unique Tile chr6:124883672-124884608 (-) NM_026988 - 122 124883550 69202 2610009E16Rik Ptms RIKEN cDNA 2610009E16 gene MGI:1916452 Mm.142187 6 6 F2 NM_001002785 + 1191 124882481 442825 A230083G16Rik 1 CAGCCCGTCTCTTTCTGAATCT ATGAAAGAGGAGGTTGGAGAGGT 7 13 16 1.1.2.3.16.13 BCBC-5B-0 14132811 P225688 Adora1 ProximalPromoter P225688 ProximalPromoter Unique Tile chr1:136051761-136052734 (-) NM_001039510;NM_001008533; - 77 136051838 11539 Adora1 A1AR|A1R|AI848715|BB176431 adenosine A1 receptor MGI:99401 Mm.298908 1 1 E4 ADORA1 134 NM_016749 + 41870 136009891 53311 Mybph 1 CCTTGACCAACAAACAGGATTTC CAGTTATGTCCAAGGGGTGGTAG 7 13 17 1.1.2.3.17.13 BCBC-5B-0 14132830 P227492 Pdx1 P227492 Pdx1 Unique Tile chr7:82639084-82640033 (+) 0 GGCCCAACATCCTAGTCAGTAGA GCATCTCACATGTAGACCAAAGG 7 13 18 1.1.2.3.18.13 BCBC-5B-0 14132849 P227378 Eya2 Pdx1 P227378 Pdx1 Unique Tile chr2:165357697-165358639 (+) NM_010165 + 11195 165346502 14049 Eya2 AI327163 eyes absent 2 homolog (Drosophila) MGI:109341 Mm.282719 2 2 H3|2 95.0 cM EYA2 2139 2 AGCAATCACTGATCAGCTTCTCC ACCAGGAAAACCAAACAAAGACA 7 13 19 1.1.2.3.19.13 BCBC-5B-0 14132868 P002410 Stratagene PCR 8 P002410 Spike Control Negative Stratagene PCR 8 7 13 20 1.1.2.3.20.13 BCBC-5B-0 14132508 P211154 PufferfishHuman P211154 PufferfishHuman Unique Tile chr18:21953488-21954477 (+) 0 GGAGGCATTGCAAACAATTAGTC AAAAGACAGGAAAAGTCGCACAG 7 14 1 1.1.2.3.1.14 BCBC-5B-0 14132527 P212276 miRNA P212276 miRNA Unique Tile chr18:10783269-10784255 (+) mmu-mir-133a-1 2 GGTCTCTGTGTAGTCCTGGCTGT AACCAGGCAAGTGCTATCTTCAG 7 14 2 1.1.2.3.2.14 BCBC-5B-0 14132546 P213116 Hoxa10 Enhancer P213116 Enhancer Unique Tile chr6:52162511-52163495 (-) NM_008263 - 999 52164494 15395 Hoxa10 Hox-1.8|Hoxa-10 homeo box A10 MGI:96171 Mm.5 6 6 B3|6 26.33 cM HOXA10 3206 NM_010456 - 5558 52156953 15405 Hoxa9 2 AGACAGACAGACCCACAAGGAAG CTCCAAAAAGGCATGACAAAATC 7 14 3 1.1.2.3.3.14 BCBC-5B-0 14132565 P213866 Hck Enhancer P213866 Enhancer Unique Tile chr2:152800354-152801263 (+) NM_010407 + 406 152799948 15162 Hck AI849071|Bmk|Hck-1|MGC18625 hemopoietic cell kinase MGI:96052 Mm.715 2 2 H1|2 86.0 cM HCK 3055 NM_145536 + 42959 152757395 228788 BC020535 0 CAGTCTACGAAAGGTGGAGGGTA TAGACCCTGTCTCCAAAAGCAAG 7 14 4 1.1.2.3.4.14 BCBC-5B-0 14132584 P214988 Taf1c Enhancer P214988 Enhancer Unique Tile chr8:122487994-122488992 (-) NM_021441 - 2167 122491159 21341 Taf1c Tafi95|mTAFI95 TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C MGI:109576 Mm.41977 8 - TAF1C 9013 NM_026648 + 26702 122461292 68270 Lrrc50 0 AGAACTTCAGATTGGAGGGGAAC TGCTTGAGTCAGGTCAAACAGAG 7 14 5 1.1.2.3.5.14 BCBC-5B-0 14132603 P215738 2810417H13Rik Enhancer P215738 Enhancer Unique Tile chr9:65688419-65689351 (+) NM_026515 + 20 65688399 68026 2810417H13Rik AA409629|MGC29306|Ns5apt9|Ns5atp9|mKIAA0101|p15(PAF) RIKEN cDNA 2810417H13 gene MGI:1915276 Mm.351273 9 9 C KIAA0101 9768 NM_019797 - 5363 65683056 56404 Trip4 0 CTCTTCTTGTGTGAACATGGTGC GGAAAAGCAGAGACAAAAGCAAA 7 14 6 1.1.2.3.6.14 BCBC-5B-0 14132622 P216578 Olfml3 Enhancer P216578 Enhancer Unique Tile chr3:103862964-103863916 (-) NM_133859 - 3093 103867009 99543 Olfml3 2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3 olfactomedin-like 3 MGI:1914877 Mm.211535 3 3 F2.2 OLFML3 56944 0 CAGATGTTGGTCTGTCTCACCAG GTCACACAACACACTCGGAGTTC 7 14 7 1.1.2.3.7.14 BCBC-5B-0 14132641 P217700 Samm50 Enhancer P217700 Enhancer Unique Tile chr15:84015469-84016407 (+) NM_178614 + 3598 84020005 68653 Samm50 1110030L07Rik sorting and assembly machinery component 50 homolog (S. cerevisiae) MGI:1915903 Mm.290725 15 15 E2 SAMM50 25813 NM_054088 + 19867 83995602 116939 Pnpla3 0 AAGAGACCTGAGCAGAGTCTGGA TTACAGGAAACACACACCACACC 7 14 8 1.1.2.3.8.14 BCBC-5B-0 14132660 P218368 Ppp1r13b ProximalPromoter P218368 ProximalPromoter Unique Tile chr12:112355960-112356859 (-) NM_011625 - 71 112355889 21981 Ppp1r13b AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85 protein phosphatase 1, regulatory (inhibitor) subunit 13B MGI:1336199 Mm.313076 12 12 F2 PPP1R13B 23368 1 CTCATGGAAGTTTAAGCCCGGT CTACGCCACCTATGATTGGTCC 7 14 9 1.1.2.3.9.14 BCBC-5B-0 14132679 P219490 Olfr616 ProximalPromoter P219490 ProximalPromoter Unique Tile chr7:103439113-103440053 (-) NM_147099 - 15 103439098 259103 Olfr616 MGC123785|MGC123786|MOR19-1 olfactory receptor 616 MGI:3030450 Mm.377845 7 - NM_147080 + 4814 103434299 259084 Olfr615 0 TTGTTGGTGTCCAATCCTCTTCT AGCTGACAACAGATTTCAAAGGC 7 14 10 1.1.2.3.10.14 BCBC-5B-0 14132698 P220330 Guca2b Enhancer P220330 Enhancer Unique Tile chr4:119158192-119159127 (-) NM_008191 - 1315 119156877 14916 Guca2b AV066530|Gcap2|Ugn guanylate cyclase activator 2b (retina) MGI:1270851 Mm.278 4 4 D2.1|4 57.0 cM GUCA2B 2981 NM_008190 + 22529 119135663 14915 Guca2a 0 GTCTTGACAGGCAGAAGAGGAAG TCTTGGGGAGTAGTAGCAACAGG 7 14 11 1.1.2.3.11.14 BCBC-5B-0 14132717 P221080 Olfr974 ProximalPromoter P221080 ProximalPromoter Unique Tile chr9:39691946-39692888 (+) NM_147107 + 56 39692832 259111 Olfr974 MOR171-1 olfactory receptor 974 MGI:3030808 Mm.223481 9 - NM_146828 - 8452 39701340 258825 Olfr975 0 CATCAGACCTGCCCTTAACATTC TCTGTTAACCCCTCAAGGACAAA 7 14 12 1.1.2.3.12.14 BCBC-5B-0 14132736 P222202 C3ar1 Enhancer P222202 Enhancer Unique Tile chr6:122820299-122821258 (-) NM_009779 - 364 122821622 12267 C3ar1 AZ3B|C3AR|HNFAG09 complement component 3a receptor 1 MGI:1097680 Mm.2408 6 6 F1 C3AR1 719 NM_026267 + 18917 122840175 67602 Necap1 2 TGTAGCCCTGACTATCCTGGAAC CCAGAGACTGCTAGGAACAGAGC 7 14 13 1.1.2.3.13.14 BCBC-5B-0 14132755 P222952 ProximalPromoter P222952 ProximalPromoter No Hits Tile 0 tatgagtatgattcccaccccct tggacattgatctgtgtgtagcc 7 14 14 1.1.2.3.14.14 BCBC-5B-0 14132774 P223792 Tagln2 ProximalPromoter P223792 ProximalPromoter Unique Tile chr1:174335926-174336827 (+) NM_178598 + 93 174336920 21346 Tagln2 2700094C18Rik|KIAA0120|SM22beta|Sm22B|Sm22a transgelin 2 MGI:1312985 Mm.271711 1 1 H3|1 94.2 cM TAGLN2 8407 NM_033608 + 16895 174319031 93842 Igsf9 2 TTTATTTTGTAGACTGGGCACGG GATAGGTGGTCAGTAGGCAGGAA 7 14 15 1.1.2.3.15.14 BCBC-5B-0 14132793 P224914 Gga2 ProximalPromoter P224914 ProximalPromoter Unique Tile chr7:121812476-121813377 (-) NM_028758 - 161 121812315 74105 Gga2 1200007E24Rik|mKIAA1080 golgi associated, gamma adaptin ear containing, ARF binding protein 2 MGI:1921355 Mm.29619 7 7 F3 GGA2 23062 NM_001033318 - 39635 121772841 233824 Cog7 0 AGTCTTATGCCCATTTGCATGTT TTGAAAGGTCAAAAGCCAAGCTA 7 14 16 1.1.2.3.16.14 BCBC-5B-0 14132812 P225664 Rassf6 ProximalPromoter P225664 ProximalPromoter Unique Tile chr5:91715628-91716561 (-) NM_028478 - 35 91715663 73246 Rassf6 1600016B17Rik Ras association (RalGDS/AF-6) domain family 6 MGI:1920496 Mm.30172 5 5 E2 RASSF6 166824 0 GTACAAGTGATGGCCGATACCTC AACCTCCAAGTTCACCTGCTTTT 7 14 17 1.1.2.3.17.14 BCBC-5B-0 14132831 P227468 Trib2 Pdx1 P227468 Pdx1 Unique Tile chr12:15869886-15870834 (+) NM_144551 - 27551 15842335 217410 Trib2 AW319517|TRB-2 tribbles homolog 2 (Drosophila) MGI:2145021 Mm.266679 12 12 A1.1 TRIB2 28951 2 AGGCTAGAAAGAGGGGGAGTCTT CTGCTTCATTTCCTCCAGTGTTC 7 14 18 1.1.2.3.18.14 BCBC-5B-0 14132850 P227444 Enpep Pdx1 P227444 Pdx1 Unique Tile chr3:129342055-129343170 (+) NM_007934 - 17313 129324742 13809 Enpep 6030431M22Rik|APA|Bp-1/6C3|Ly-51|Ly51 glutamyl aminopeptidase MGI:106645 Mm.1193 3 3 G3|3 65.2 cM ENPEP 2028 0 TCGGAAGGGAAGTTTACATTGTT TGGAAAGAAAGTGCTAGAGGCTG 7 14 19 1.1.2.3.19.14 BCBC-5B-0 14132869 P002386 Stratagene PCR 6 P002386 Spike Control Negative Stratagene PCR 6 7 14 20 1.1.2.3.20.14 BCBC-5B-0 14132509 P211130 PufferfishHuman P211130 PufferfishHuman Unique Tile chr7:109011781-109012694 (-) 0 AGAGTCTTCAGGCTGAGCTTTCA GACCCCCAGAGAAAATAAAATGG 7 15 1 1.1.2.3.1.15 BCBC-5B-0 14132528 P211970 PufferfishHuman P211970 PufferfishHuman Unique Tile chr7:37542125-37542980 (-) 0 GGCTTTCGTATCATATGCCTGAC TGTCGACATTGTCACCCAAATAC 7 15 2 1.1.2.3.2.15 BCBC-5B-0 14132547 P213092 Enhancer P213092 Enhancer Unique Tile chr13:102050597-102051526 (-) 0 TGTTGAGCAACCAGCATAAGAAA CGATGGTTTCTGTGATGAGAGTG 7 15 3 1.1.2.3.3.15 BCBC-5B-0 14132566 P213842 Gnao1 Enhancer P213842 Enhancer Unique Tile chr8:96701670-96702605 (+) NM_010308 + 1531 96700139 14681 Gnao1 Gnao guanine nucleotide binding protein, alpha o MGI:95775 Mm.251445 8 8 C5|8 45.0 cM GNAO1 2775 0 TCCTAATTAACTGGGGGTGGATT ACTTACAACGCCTGAAACCTCAC 7 15 4 1.1.2.3.4.15 BCBC-5B-0 14132585 P214964 Snrpb2 Enhancer P214964 Enhancer Unique Tile chr2:142751237-142752154 (+) NM_021335 + 2336 142754490 20639 Snrpb2 2810052G09Rik U2 small nuclear ribonucleoprotein B MGI:104805 Mm.1323 2 2 G1 SNRPB2 6629 NM_020595 + 17778 142769932 57329 Otor 1 TTCCAGAATGGAAAAGAGAGGGT GAGGCAATAAGCCTCAGAGACAA 7 15 5 1.1.2.3.5.15 BCBC-5B-0 14132604 P215804 Tmed10 Enhancer P215804 Enhancer Unique Tile chr12:86265846-86266664 (-) NM_026775 - 2020 86263826 68581 Tmed10 1110014C03Rik|MGC102351|Tmp21|p23|p24delta1 transmembrane emp24-like trafficking protein 10 (yeast) MGI:1915831 Mm.379159 12 12 D2 TMED10 10972 NM_145138 - 37412 86228434 217718 Nek9 0 TGCACTTAGCAGGCAGAGATAGA CTGTCTACCTGGTTCCTTTCCTG 7 15 6 1.1.2.3.6.15 BCBC-5B-0 14132623 P216554 4833439L19Rik Enhancer P216554 Enhancer Unique Tile chr13:54573681-54574590 (-) NM_133797 - 329 54574919 97820 4833439L19Rik 4930558H15Rik|C81457 RIKEN cDNA 4833439L19 gene MGI:1921162 Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151; Mm.24593; Mm.376151 13 13 B1 KIAA1191 57179 NM_019968 + 10096 54584686 56795 Arl10 0 ATCTCAGAGGCTTTGTTTTGCAC TATACCACGGCTGAGAAGGTGAT 7 15 7 1.1.2.3.7.15 BCBC-5B-0 14132642 P217676 Gale Enhancer P217676 Enhancer Unique Tile chr4:135235164-135236142 (+) NM_178389 + 1098 135237240 74246 Gale 2310002A12Rik|AI323962 galactose-4-epimerase, UDP MGI:1921496 Mm.247946 4 4 D3 GALE 2582 NM_011942 - 8528 135244670 26394 Lypla2 0 TGCCAGCTATGTATGGTATGTGC CTGTCTGTACAAGGCAGGAGAGC 7 15 8 1.1.2.3.8.15 BCBC-5B-0 14132661 P218344 AY053573 ProximalPromoter P218344 ProximalPromoter Unique Tile chr10:127226235-127227191 (+) NM_199313 + 41 127227232 380674 AY053573 - cDNA sequence AY053573 MGI:2687008 Mm.331466 10 10 D3 NM_009040 + 22103 127204132 19683 Rdh16 0 CCTCATGCTAACAGTCACACCTG GTGTCAAAATGAGCCTGACCTCT 7 15 9 1.1.2.3.9.15 BCBC-5B-0 14132680 P219184 Barhl1 Enhancer P219184 Enhancer Unique Tile chr2:28739350-28740400 (-) NM_019446 - 901 28738449 54422 Barhl1 Dres115|MBH2 BarH-like 1 (Drosophila) MGI:1859288 Mm.21390 2 2 A3|2 17.0 cM BARHL1 56751 1 GCTTACAGGTCCCAAAAGAGTGA TCTAGGGCGTATGTCCTGAGAAG 7 15 10 1.1.2.3.10.15 BCBC-5B-0 14132699 P220306 Olfr57 ProximalPromoter P220306 ProximalPromoter Unique Tile chr10:78437006-78438023 (+) NM_147041 + 97 78437926 18357 Olfr57 IF12|MOR139-3 olfactory receptor 57 MGI:1333808 Mm.246544; Mm.271575; Mm.246544; Mm.271575; Mm.246544; Mm.271575 10 10 C1 NM_147040 + 16554 78420452 259042 Olfr1351 0 TCAGGTGTGTGTTAAGGAGTCCA GGAACAGTCCAAATATGACAGGC 7 15 11 1.1.2.3.11.15 BCBC-5B-0 14132718 P221056 Ulk2 Enhancer P221056 Enhancer Unique Tile chr11:61669531-61670501 (-) NM_013881 - 311 61670812 29869 Ulk2 A830085I22Rik|AU015340|Unc51.2|mKIAA0623 Unc-51 like kinase 2 (C. elegans) MGI:1352758 Mm.162025 11 11 B2 ULK2 9706 0 ATGTTCTTCCCTGACAGTGTGCT ATAGCCACCTCCCAATCAGTTTT 7 15 12 1.1.2.3.12.15 BCBC-5B-0 14132737 P222178 Plekhf1 Enhancer P222178 Enhancer Unique Tile chr7:37935903-37936810 (-) NM_024413 - 237 37937047 72287 Plekhf1 1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15 pleckstrin homology domain containing, family F (with FYVE domain) member 1 MGI:1919537 Mm.333798 7 7 B1 PLEKHF1 79156 NM_028166 + 42967 37892936 72244 1600014C10Rik 0 TCTCTACCCTCTCCTTATCCCGT CCCAGAGGGCATTCCTATAATCT 7 15 13 1.1.2.3.13.15 BCBC-5B-0 14132756 P223018 6330527O06Rik Enhancer P223018 Enhancer Unique Tile chr2:135749886-135750799 (+) NM_029530 + 237 135751036 76161 6330527O06Rik 3110035N03Rik RIKEN cDNA 6330527O06 gene MGI:1923411 Mm.41638; Mm.423451; Mm.41638; Mm.423451; Mm.41638; Mm.423451; Mm.41638; Mm.423451; Mm.41638; Mm.423451; Mm.41638; Mm.423451; Mm.41638; Mm.423451; Mm.41638; Mm.423451 2 2 F3 C20orf103 24141 0 AGCCCTCTGATTTCACTCTGTTG GTAGACTCTTACGTGCACACCCC 7 15 14 1.1.2.3.14.15 BCBC-5B-0 14132775 P223768 Amigo2 ProximalPromoter P223768 ProximalPromoter Unique Tile chr15:97075621-97076350 (-) NM_178114 - 465 97075156 105827 Amigo2 AI415330|AW208913|Ali1 adhesion molecule with Ig like domain 2 MGI:2145995 Mm.24005 15 15 F1 AMIGO2 347902 NM_172293 + 481 97075140 239647 BC038822 1 TCACTGTCTCCCCAATTTTGTCT GATCTCGGAGCCTGGCTTTAG 7 15 15 1.1.2.3.15.15 BCBC-5B-0 14132794 P224890 Zc3h14 ProximalPromoter P224890 ProximalPromoter Unique Tile chr12:99146952-99147859 (+) NM_001008506;NM_029334; + 158 99148017 75553 Zc3h14 1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748 zinc finger CCCH type containing 14 MGI:1919824 Mm.25549 12 12 F1 ZC3H14 79882 NM_011877 - 8497 99138455 24000 Ptpn21 0 GAGGCAGGAGATAGAAGAGGGAG CTACGGGGTTACCTGGTTTCAC 7 15 16 1.1.2.3.16.15 BCBC-5B-0 14132813 P225640 Xkr7 ProximalPromoter P225640 ProximalPromoter Unique Tile chr2:152722388-152723338 (+) NM_001011732 + 46 152723292 228787 Xkr7 AY534253 X Kell blood group precursor related family member 7 homolog MGI:3526711 Mm.376111 2 2 H1 XKR7 343702 NM_178939 - 15564 152706824 68559 Pdrg1 1 GTCCTAGGATATCCCATCCAAGC CCTCCTCCCCTCTACCTCAATTA 7 15 17 1.1.2.3.17.15 BCBC-5B-0 14132832 P226682 Trp53inp2 Pdx1 P226682 Pdx1 Unique Tile chr2:155071416-155072330 (+) NM_178111 + 966 155073296 68728 Trp53inp2 1110029F20Rik tumor protein p53 inducible nuclear protein 2 MGI:1915978 Mm.293605; Mm.428341; Mm.293605; Mm.428341; Mm.293605; Mm.428341; Mm.293605; Mm.428341; Mm.293605; Mm.428341; Mm.293605; Mm.428341; Mm.293605; Mm.428341; Mm.293605; Mm.428341; Mm.293605; Mm.428341; Mm.293605; Mm.428341; Mm.293605; Mm.428341; Mm.293605; Mm.428341; Mm.293605; Mm.428341; Mm.293605; Mm.428341; Mm.293605; Mm.428341; Mm.293605; Mm.428341; Mm.293605; Mm.428341; Mm.293605; Mm.428341; Mm.293605; Mm.428341; Mm.293605; Mm.428341; Mm.293605; Mm.428341; Mm.293605; Mm.428341; Mm.293605; Mm.428341 2 2 H1 TP53INP2 58476 NM_001004721 - 22551 155048865 228812 Cdc91l1 0 GCGAGTTTTGAAAAGACAAAGGA CCCAAAAGGTAGGTAGCATCCTC 7 15 18 1.1.2.3.18.15 BCBC-5B-0 14132851 P227420 Pdx1 P227420 Pdx1 Unique Tile chr3:69292732-69293677 (+) 1 CACACACACACACACACACACAC GGAGGGGCTTGGAGTTTATTCTA 7 15 19 1.1.2.3.19.15 BCBC-5B-0 14132870 P002362 Stratagene PCR 4 P002362 Spike Control Negative Stratagene PCR 4 7 15 20 1.1.2.3.20.15 BCBC-5B-0 14132510 P211196 Mrg1 PufferfishHuman P211196 PufferfishHuman Unique Tile chr2:115710755-115711654 (+) NM_010825 - 44900 115756554 17536 Mrg1 A430109D20Rik|Meis2|Stra10 myeloid ecotropic viral integration site-related gene 1 MGI:108564 Mm.247566; Mm.261124; Mm.427057; Mm.247566; Mm.261124; Mm.427057; Mm.247566; Mm.261124; Mm.427057; Mm.247566; Mm.261124; Mm.427057; Mm.247566; Mm.261124; Mm.427057; Mm.247566; Mm.261124; Mm.427057; Mm.247566; Mm.261124; Mm.427057; Mm.247566; Mm.261124; Mm.427057; Mm.247566; Mm.261124; Mm.427057; Mm.247566; Mm.261124; Mm.427057; Mm.247566; Mm.261124; Mm.427057; Mm.247566; Mm.261124; Mm.427057; Mm.247566; Mm.261124; Mm.427057; Mm.247566; Mm.261124; Mm.427057; Mm.247566; Mm.261124; Mm.427057; Mm.247566; Mm.261124; Mm.427057 2 2 E4|2 64.0 cM MEIS2 4212 1 AGAGAGCAGGACTGATTACAGGC GAGACCGTTCTTTACCTCGGTTT 7 16 1 1.1.2.3.1.16 BCBC-5B-0 14132529 P211946 Sox2 PufferfishHuman P211946 PufferfishHuman Unique Tile chr3:34840973-34841991 (-) NM_011443 + 307 34841684 20674 Sox2 Sox-2|lcc|ysb SRY-box containing gene 2 MGI:98364 Mm.4541; Mm.65396; Mm.4541; Mm.65396; Mm.4541; Mm.65396; Mm.4541; Mm.65396; Mm.4541; Mm.65396 3 3 A2-B|3 15.0 cM SOX2 6657 1 CAGCTCCGTCTCCATCATGTTAT GGCTTGGGTCTAACTTCTCGTCT 7 16 2 1.1.2.3.2.16 BCBC-5B-0 14132548 P213068 Gna14 Enhancer P213068 Enhancer Unique Tile chr19:16497819-16498814 (+) NM_008137 + 3966 16502780 14675 Gna14 AU023208 guanine nucleotide binding protein, alpha 14 MGI:95769 Mm.313181 19 19 A-B|19 9.0 cM GNA14 9630 0 TGACAGCGTTCCTCTGTGTATGT TAAAAGAGCAACCCAGTGGATGT 7 16 3 1.1.2.3.3.16 BCBC-5B-0 14132567 P213818 Gab2 Enhancer P213818 Enhancer Unique Tile chr7:96957349-96958305 (+) NM_010248 + 382 96956967 14389 Gab2 AI463667|D130058I17Rik|p97 growth factor receptor bound protein 2-associated protein 2 MGI:1333854 Mm.42033; Mm.45086; Mm.42033; Mm.45086; Mm.42033; Mm.45086; Mm.42033; Mm.45086; Mm.42033; Mm.45086; Mm.42033; Mm.45086; Mm.42033; Mm.45086; Mm.42033; Mm.45086 7 - GAB2 9846 1 CCGAAGTTTGGAGCGATTGTT AGTCAGAGCCTGGTTTCATTGAC 7 16 4 1.1.2.3.4.16 BCBC-5B-0 14132586 P214658 Oat Enhancer P214658 Enhancer Unique Tile chr7:132412343-132413368 (-) NM_016978 - 1306 132414674 18242 Oat AI194874 ornithine aminotransferase MGI:97394 Mm.13694 7 7 F3|7 63.0 cM OAT 4942 NM_009123 - 24612 132437980 20231 Nkx1-2 0 AACTCAGGACCTTCAGAAGAGCA ACTTCAGGCACTTGTTTTCAAGC 7 16 5 1.1.2.3.5.16 BCBC-5B-0 14132605 P215780 Vps53 Enhancer P215780 Enhancer Unique Tile chr11:75999740-76000740 (-) NM_026664 - 3915 75995825 68299 Vps53 2010002A08Rik|2310040I21Rik|3100002B05Rik vacuolar protein sorting 53 (yeast) MGI:1915549 Mm.46397 11 11 B4 VPS53 55275 NM_027773 + 17510 76018250 116972 2310047D13Rik 1 CTAATCCACCTGCTTCTTCCTCA CCAGGGCTATACAGAGAAACCCT 7 16 6 1.1.2.3.6.16 BCBC-5B-0 14132624 P216530 2900064A13Rik Enhancer P216530 Enhancer Unique Tile chr2:112256209-112257176 (+) NM_133749 + 306 112255903 73024 2900064A13Rik AI451465|MGC144286|MGC144287|c11orf3 RIKEN cDNA 2900064A13 gene MGI:1920274 Mm.268027; Mm.393173; Mm.268027; Mm.393173; Mm.268027; Mm.393173; Mm.268027; Mm.393173; Mm.268027; Mm.393173; Mm.268027; Mm.393173; Mm.268027; Mm.393173; Mm.268027; Mm.393173; Mm.268027; Mm.393173; Mm.268027; Mm.393173; Mm.268027; Mm.393173; Mm.268027; Mm.393173; Mm.268027; Mm.393173; Mm.268027; Mm.393173; Mm.268027; Mm.393173; Mm.268027; Mm.393173; Mm.268027; Mm.393173; Mm.268027; Mm.393173; Mm.268027; Mm.393173; Mm.268027; Mm.393173 2 2 E4 C15orf24 56851 NM_205783 - 24432 112281608 213788 Chrm5 0 GTCAGGACCCTCAGTGTAGCTGT TCAATTAAGCCTTACCTCCCACA 7 16 7 1.1.2.3.7.16 BCBC-5B-0 14132643 P217652 Tm2d3 Enhancer P217652 Enhancer Unique Tile chr7:65565515-65566433 (+) NM_178056;NM_026795; + 3685 65570118 68634 Tm2d3 1110025I09Rik|5930422O05Rik|Blp2 TM2 domain containing 3 MGI:1915884 Mm.35127 7 7 C TM2D3 80213 NM_172310 + 41652 65523863 272396 Tarsl2 0 CTGGAGGACTGCTCTAAAATCCA TCAGTAGCGACGAGTCCTAATCC 7 16 8 1.1.2.3.8.16 BCBC-5B-0 14132662 P218410 Hamp2 ProximalPromoter P218410 ProximalPromoter Unique Tile chr7:30632898-30633922 (-) NM_183257 - 40 30632938 66438 Hamp2 1810073K19Rik|HEPC2|MGC107568 hepcidin antimicrobial peptide 2 MGI:2153530 Mm.389860 7 7 B1 NM_010758 - 9306 30623592 17136 Mag 0 AAAGAGCACCACACAGGCTTTAG CTCCTGTTCTGCTGTGCAGTCTA 7 16 9 1.1.2.3.9.16 BCBC-5B-0 14132681 P219160 Sult1e1 Enhancer P219160 Enhancer Unique Tile chr5:88664406-88665323 (-) NM_023135 - 790 88666113 20860 Sult1e1 Ste sulfotransferase family 1E, member 1 MGI:98431 Mm.89655 5 5 E1|5 44.0 cM SULT1E1 6783 NM_016771 - 20886 88643520 53315 Sult1d1 0 AATTGGCACCTATTCACCTCCTT CAACACTTTCGATTTGTCCATGA 7 16 10 1.1.2.3.10.16 BCBC-5B-0 14132700 P220282 Ly6g5c ProximalPromoter P220282 ProximalPromoter Unique Tile chr17:34715273-34716365 (+) NM_148947 + 10 34716355 114652 Ly6g5c G5c|NG33 lymphocyte antigen 6 complex, locus G5C MGI:2148974 Mm.222643 17 17 B1 LY6G5C 80741 NM_148939 - 7091 34723456 266614 Ly6g5b 1 TGCAACAAAGGCAGAACTTTACA TAAAAAGCATGGCTTCTCTCCAG 7 16 11 1.1.2.3.11.16 BCBC-5B-0 14132719 P221032 A330070K13Rik ProximalPromoter P221032 ProximalPromoter Unique Tile chr5:130669213-130670158 (-) NM_198665 - 121 130669334 381673 A330070K13Rik Gm1051 RIKEN cDNA A330070K13 gene MGI:2685897 Mm.192133 5 5 G1.3 0 GAAGTGAGTTTCCTCAAAAGGCA GCTCCATCTCCTCACTGGAACTA 7 16 12 1.1.2.3.12.16 BCBC-5B-0 14132738 P221872 Sept4 ProximalPromoter P221872 ProximalPromoter Unique Tile chr11:87358513-87359412 (+) NM_011129 + 37843 87397255 18952 Sept4 Bh5|Pnutl2 septin 4 MGI:1270156 Mm.2214 11 11 C SEPT4 5414 NM_133215 + 48999 87408411 170749 Mtmr4 0 AGTCAGAGTCATGTAAGAGGGCG TTGTAAAAATCAAGGCCATCAGG 7 16 13 1.1.2.3.13.16 BCBC-5B-0 14132757 P222994 Slc6a2 ProximalPromoter P222994 ProximalPromoter Unique Tile chr8:95849407-95850488 (+) NM_009209 + 131 95850357 20538 Slc6a2 NE-T|NET|Slc6a5 solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2 MGI:1270850 Mm.57040 8 8 C5|8 45.0 cM SLC6A2 6530 1 AATTCTGGGAATCTGTCCCTCTC TCCTTCACCACTAGTAGATCGGC 7 16 14 1.1.2.3.14.16 BCBC-5B-0 14132776 P223744 Pde6d Enhancer P223744 Enhancer Unique Tile chr1:88412493-88413496 (-) NM_008801 - 176 88413672 18582 Pde6d AI841218 phosphodiesterase 6D, cGMP-specific, rod, delta MGI:1270843 Mm.12925 1 1 D PDE6D 5147 NM_172974 + 4774 88418270 26895 Cops7b 1 AGGGATATCCTGAGAGGCTTCAA TTTCTTTTCCTCCTCTGGCTTCT 7 16 15 1.1.2.3.15.16 BCBC-5B-0 14132795 P224866 Inadl ProximalPromoter P224866 ProximalPromoter Unique Tile chr4:97886774-97887692 (+) NM_172696;NM_007704;NM_001005784;NM_001005787; + 151 97887843 12695 Inadl Cipp|Patj InaD-like (Drosophila) MGI:1277960 Mm.90218 4 4 C6 INADL 10207 NM_053157 - 11491 97875283 94043 Tm2d1 0 GGGGAATATGGAGCTCAAAGAAC TTGCGTCCAGGTACAGAGTTGT 7 16 16 1.1.2.3.16.16 BCBC-5B-0 14132814 P225706 Olfr503 ProximalPromoter P225706 ProximalPromoter Unique Tile chr7:108334820-108335740 (+) NM_001011527 + 37 108335703 259143 Olfr503 MOR34-12|MOR34-8P olfactory receptor 503 MGI:3030337 Mm.377864 7 7 E3 NM_146739 - 19695 108315125 258734 Olfr502 0 AGGAAAATCAGGGGGATTTGTAA GGGTCAGATCTGGGTTATTCCTC 7 16 17 1.1.2.3.17.16 BCBC-5B-0 14132833 P226658 Pdx1 P226658 Pdx1 Unique Tile chr6:100555758-100556671 (+) 0 TCCAACAACATAAATCCAGGCTC GCTTTTTCACAGGTCTTTTGTGG 7 16 18 1.1.2.3.18.16 BCBC-5B-0 14132852 P227396 Zfp704 Pdx1 P227396 Pdx1 Unique Tile chr3:9573546-9574489 (+) NM_133218 - 18669 9593158 170753 Zfp704 C030026M03|C030034L19Rik|Gig1 zinc finger protein 704 MGI:2180715 Mm.212908 3 3 A1 ZNF704 619279 0 GACCTGCTCGATGTCTCCATATT ACCCATGGTTCCTTGAGATTTTT 7 16 19 1.1.2.3.19.16 BCBC-5B-0 14132871 P002338 Stratagene PCR 2 P002338 Spike Control Negative Stratagene PCR 2 7 16 20 1.1.2.3.20.16 BCBC-5B-0 14132511 P211172 BC052040 PufferfishHuman P211172 PufferfishHuman Unique Tile chr2:115321815-115322878 (+) NM_207264 + 48599 115273216 399568 BC052040 MGC62402 cDNA sequence BC052040 MGI:3026886 Mm.134929 2 2 E4 C15orf41 84529 0 AGACAGTTGTAGAAGCAAACGCC ATTTTCTGCCTCTCTTGCCTTCT 7 17 1 1.1.2.3.1.17 BCBC-5B-0 14132530 P211922 PufferfishHuman P211922 PufferfishHuman Unique Tile chr6:15390686-15391720 (-) 0 CTAATACGCCAGTGATGTTGCTG ATGTTGGTGGACCCATAAATGAC 7 17 2 1.1.2.3.2.17 BCBC-5B-0 14132549 P213044 Fzd4 Enhancer P213044 Enhancer Unique Tile chr7:89280194-89281197 (+) NM_008055 + 609 89279585 14366 Fzd4 Fz4 frizzled homolog 4 (Drosophila) MGI:108520 Mm.387968 7 7 D3|7 44.5 cM FZD4 8322 0 CTCGGTAGACAGAGACTCCCAAA ACAACTCAGCTTTTACAGCGACC 7 17 3 1.1.2.3.3.17 BCBC-5B-0 14132568 P213884 Hoxa2 Enhancer P213884 Enhancer Unique Tile chr6:52090742-52091722 (-) NM_010451 - 2639 52094361 15399 Hoxa2 AI324701|HOX1.11|Hox-1.11|MGC151482|MGC151484 homeo box A2 MGI:96174 Mm.131 6 6 B3|6 26.29 cM HOXA2 3199 NM_010449 - 2842 52087900 15394 Hoxa1 0 TTCCAGTTCTAGGACGAGTGGAG TTTATTTGTGCATGTGTTCCTGC 7 17 4 1.1.2.3.4.17 BCBC-5B-0 14132587 P214634 Hnrpc Enhancer P214634 Enhancer Unique Tile chr14:51024654-51025602 (-) NM_016884 - 318 51025920 15381 Hnrpc AL022939|D14Wsu171e|Hnrnpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C heterogeneous nuclear ribonucleoprotein C MGI:107795 Mm.274690 14 14 C1|14 20.0 cM HNRPC 3183 NM_023879 + 7270 51032872 77945 Rpgrip1 1 CTTTGATTTTCTTTGCCCATCAG CCAGGGCTATACAGAGAAACCCT 7 17 5 1.1.2.3.5.17 BCBC-5B-0 14132606 P215756 Bcas2 Enhancer P215756 Enhancer Unique Tile chr3:103297643-103298601 (+) NM_026602 + 2170 103300771 68183 Bcas2 6430539P16Rik|AI132645|C76366|C80030|MGC7712 breast carcinoma amplified sequence 2 MGI:1915433 Mm.104919 3 3 F2.2 BCAS2 10286 NM_177857 + 41027 103256616 329727 Dennd2c 0 GCTGGGATAGCTTGCTTCTCATA GTAAACCCTCCTTCCCCATCTTA 7 17 6 1.1.2.3.6.17 BCBC-5B-0 14132625 P216506 Cxxc5 Enhancer P216506 Enhancer Unique Tile chr18:35981259-35982245 (+) NM_133687 + 2261 35984506 67393 Cxxc5 4930415K17Rik|MGC101987 CXXC finger 5 MGI:1914643 Mm.94560 18 18 B3 CXXC5 51523 0 ATTCTCACTCTCAGCTCCTCCCT GGTCTCAGTCCCAGAGTCCTACA 7 17 7 1.1.2.3.7.17 BCBC-5B-0 14132644 P217346 BC027344 Enhancer P217346 Enhancer Unique Tile chr7:29564248-29565178 (+) NM_173738 - 1840 29562408 233057 BC027344 - cDNA sequence BC027344 MGI:2446235 Mm.296864 7 7 B1 NM_146185 + 39370 29524878 233056 6330581L23Rik 0 CTAGGCCCCTCCTGTTATTATGG CTTTTGGATCATGGCTATGGAAG 7 17 8 1.1.2.3.8.17 BCBC-5B-0 14132663 P218386 Btn2a2 ProximalPromoter P218386 ProximalPromoter Unique Tile chr13:23496319-23497310 (-) NM_175938 - 14 23496305 238555 Btn2a2 Btn2|D030063K05 butyrophilin, subfamily 2, member A2 MGI:3606486 Mm.129668 13 13 A3.1 BTN2A2 10385 NM_013483 - 22945 23473374 12231 Btn1a1 2 CAGTGACCTCTAAGCTTGCTGTG TTTCCACTAAGCAGTTCAGAGCC 7 17 9 1.1.2.3.9.17 BCBC-5B-0 14132682 P219136 Tspan17 Enhancer P219136 Enhancer Unique Tile chr13:54799438-54800339 (+) NM_028841 + 356 54799082 74257 Tspan17 2210021G21Rik|AI047581|Fbxo23|Tm4sf17 tetraspanin 17 MGI:1921507 Mm.32883 13 13 B2 TSPAN17 26262 NM_001033269;NM_001039683; + 5797 54793641 218268 Gm273 0 CCCAACTATTCTGGGGAGCTACT GTTACTAAGCTGGGTGTGATGGC 7 17 10 1.1.2.3.10.17 BCBC-5B-0 14132701 P220258 Frs2 ProximalPromoter P220258 ProximalPromoter Unique Tile chr10:116552596-116553563 (-) NM_177798 - 12 116552584 327826 Frs2 4732458E18|C330018A15Rik|Frs2alpha|SNT1 fibroblast growth factor receptor substrate 2 MGI:1100860 Mm.135965 10 10 D2 FRS2 10818 0 ATCGTCTCACTTCTTTGCCTGAC CTGTGTCTACAAGGCCTCTCTCC 7 17 11 1.1.2.3.11.17 BCBC-5B-0 14132720 P221098 Alg8 ProximalPromoter P221098 ProximalPromoter Unique Tile chr7:97245927-97246910 (+) NM_199035 + 91 97246819 381903 Alg8 AI447372|Gm1089|MGC74399 asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase) MGI:2141959 Mm.279683 7 7 E1 ALG8 79053 NM_024220 + 28373 97275283 68197 Ndufc2 0 TCTTTCCTGGTACCATCTCAAGC AAGGCACTTAAGGAGAGTCACCC 7 17 12 1.1.2.3.12.17 BCBC-5B-0 14132739 P221848 Olfr1049 ProximalPromoter P221848 ProximalPromoter Unique Tile chr2:86056510-86057605 (-) NM_147016 - 20 86056530 259018 Olfr1049 MOR187-1 olfactory receptor 1049 MGI:3030883 Mm.223405 2 - NM_147014 - 18838 86037672 259016 Olfr1048 0 ATGAAGTCACACATTCCTGCTGA TGTTATATTTGGTTGCCCCATTG 7 17 13 1.1.2.3.13.17 BCBC-5B-0 14132758 P222970 Gtpbp2 Enhancer P222970 Enhancer Unique Tile chr17:45626238-45627165 (+) NM_019581 + 1587 45624651 56055 Gtpbp2 - GTP binding protein 2 MGI:1860138 Mm.22147 17 17 C-D GTPBP2 54676 NM_025649 - 9121 45617117 66591 Mad2l1bp 2 ATAAAATGGCCAGAGAGGAGGAG GCTATCAGAGAGATCACCTCCCA 7 17 14 1.1.2.3.14.17 BCBC-5B-0 14132777 P223720 Zfp235 Enhancer P223720 Enhancer Unique Tile chr7:23843194-23844127 (+) NM_019941 + 193 23843001 56525 Zfp235 0610030O19Rik|AI428448|MGC107482 zinc finger protein 235 MGI:1929117 Mm.295595 7 7 A3 NM_021307 + 22135 23821059 57745 Zfp112 0 GAGTCTGTCAGAGGAACGGTGAT TCATGTTTCCAATCCCTAGCACT 7 17 15 1.1.2.3.15.17 BCBC-5B-0 14132796 P224560 5730403M16Rik ProximalPromoter P224560 ProximalPromoter Unique Tile chr7:6725496-6726552 (-) NM_172738 - 35 6725531 232853 5730403M16Rik 8030437F07|AA123315 RIKEN cDNA 5730403M16 gene MGI:1917764 Mm.23838 7 7 A1 NM_146179 + 48906 6775458 232854 Zfp418 0 GCTCCTACCTTCCAACCTTGTTT GCAGATGACACCAGTTTTCTGTG 7 17 16 1.1.2.3.16.17 BCBC-5B-0 14132815 P225682 Tpm4 ProximalPromoter P225682 ProximalPromoter Unique Tile chr8:75063388-75064313 (+) NM_001001491 + 4 75064309 326618 Tpm4 - tropomyosin 4 MGI:2449202 Mm.295124 8 8 B3.3 TPM4 7171 NM_146338 + 24832 75038556 258335 Olfr374 1 ACTTCCTCAAGAGAGTGGGGACT CATAGCTCAATCGTTCTGCTGG 7 17 17 1.1.2.3.17.17 BCBC-5B-0 14132834 P226634 Itga2 Pdx1 P226634 Pdx1 Unique Tile chr13:116044110-116045023 (+) NM_008396 - 7896 116052919 16398 Itga2 CD49B integrin alpha 2 MGI:96600 Mm.5007 13 13 D2.2|13 64.0 cM ITGA2 3673 0 AACTTTTCTTTTGCCTTCATCCC CCTTGTCTTATGAAGCAGGCACT 7 17 18 1.1.2.3.18.17 BCBC-5B-0 14132853 P227372 Pdx1 P227372 Pdx1 Unique Tile chr10:14317898-14318840 (+) 0 CATGATGTTTCATCACAGTGACA CCAGGTTTCTGTCCACTTCTTTC 7 17 19 1.1.2.3.19.17 BCBC-5B-0 14132872 P002404 Stratagene PCR 7 P002404 Spike Control Negative Stratagene PCR 7 7 17 20 1.1.2.3.20.17 BCBC-5B-0 14132512 P211148 St18 PufferfishHuman P211148 PufferfishHuman Unique Tile chr1:6757477-6758492 (-) NM_173868 + 37296 6720181 240690 St18 AV348974|NZF-3|mKIAA0535 suppression of tumorigenicity 18 MGI:2446700 Mm.234612 1 1 A1 ST18 9705 0 TGGGAGTTTACTATCAACAGCGA AGCCCTTTTAATCCTAGGCAGTG 7 18 1 1.1.2.3.1.18 BCBC-5B-0 14132531 P211898 LOC434280 PufferfishHuman P211898 PufferfishHuman Unique Tile chr8:12385307-12386216 (-) NM_001013812 + 435 12385742 434280 LOC434280 - hypothetical gene supported by BC066076 8 8 A1.1 NM_009233 + 10116 12396332 20664 Sox1 1 ATAAGAAAATGACCAATGGACCC AAGTGACTGCTGACAGGGATAGG 7 18 2 1.1.2.3.2.18 BCBC-5B-0 14132550 P212738 miRNA P212738 miRNA Unique Tile chr12:110169838-110170752 (+) mmu-mir-376b 0 ATGAATGTCCTGCTTAGCCATGT AAGCTCTCAAGATTGCTCATTGG 7 18 3 1.1.2.3.3.18 BCBC-5B-0 14132569 P213860 H2-Ab1 Enhancer P213860 Enhancer Unique Tile chr17:33872659-33873589 (+) NM_207105 + 1205 33871454 14961 H2-Ab1 AI845868|Abeta|H-2Ab|H2-Ab|I-A|I-Abeta|IAb|Ia-2|Ia2|Rmcs1 histocompatibility 2, class II antigen A, beta 1 Mm.254067 17 17 B1|17 18.64 cM NM_010389 + 22033 33850626 15002 H2-Ob 1 GTACCAAGTACCGTTTGCGTTTC GAACACACGGAAATCAGGAAAAC 7 18 4 1.1.2.3.4.18 BCBC-5B-0 14132588 P214610 Chst3 Enhancer P214610 Enhancer Unique Tile chr10:59585155-59586088 (-) NM_016803 - 1091 59584064 53374 Chst3 C6ST|GST-0 carbohydrate (chondroitin 6/keratan) sulfotransferase 3 MGI:1858224 Mm.12866 10 10 B4 CHST3 9469 0 GAGAGGAGGCTGGGTTAATGACT AGTTCTGCTGGGCTAGACTGAGA 7 18 5 1.1.2.3.5.18 BCBC-5B-0 14132607 P215732 Sfrs6 Enhancer P215732 Enhancer Unique Tile chr2:162623558-162624488 (+) NM_026499 + 573 162622985 67996 Sfrs6 1210001E11Rik|AI314910|AW146126 splicing factor, arginine/serine-rich 6 MGI:1915246 Mm.24042 2 2 H2|2 79.8 cM SFRS6 6431 1 CGATGGCTACAGCTACGGAAG CAAAACACGCAAGGTAACAGTCA 7 18 6 1.1.2.3.6.18 BCBC-5B-0 14132626 P216572 Ehd4 Enhancer P216572 Enhancer Unique Tile chr2:119844668-119845694 (-) NM_133838 - 255 119845949 98878 Ehd4 2210022F10Rik|AI197390|AI846352|AV006278|Past2 EH-domain containing 4 MGI:1919619 Mm.132226 2 2 E5 EHD4 30844 0 ACCACGTTCATCAGGTAATTTGC TTATTTTCCCCCTCTCTTCGTTC 7 18 7 1.1.2.3.7.18 BCBC-5B-0 14132645 P217322 5830434P21Rik Enhancer P217322 Enhancer Unique Tile chr2:31973411-31974505 (+) NM_172661 + 246 31973165 227723 5830434P21Rik AI173903|D430039P21|mKIAA0515 RIKEN cDNA 5830434P21 gene MGI:1923304 Mm.25504 2 2 B 1 AGCTCGCCATTGTTGTGTCTT TGGGTATTTTGTTGGGTTTTCAC 7 18 8 1.1.2.3.8.18 BCBC-5B-0 14132664 P218362 Olfr582 ProximalPromoter P218362 ProximalPromoter Unique Tile chr7:102914305-102915308 (+) NM_147053 + 7 102915301 259055 Olfr582 MGC130306|MGC130307|MOR30-3 olfactory receptor 582 MGI:3030416 Mm.377812 7 - NM_146757 + 9812 102925120 258752 Olfr583 0 TAAAGAAAGCACATGGTGGGACT GCATCATATTTCCTGTGTGGTGA 7 18 9 1.1.2.3.9.18 BCBC-5B-0 14132683 P219112 Gabrg3 ProximalPromoter P219112 ProximalPromoter Unique Tile chr7:57254823-57255859 (-) NM_008074 - 8 57254815 14407 Gabrg3 Gabrg-3 gamma-aminobutyric acid (GABA-A) receptor, subunit gamma 3 MGI:95624 Mm.322668 7 7 B5|7 28.2 cM GABRG3 2567 NM_177273 - 67 57254890 320835 B230362M20Rik 1 TGGCTGCAAGGGAAGTACTTTAT CAGGGCTTGGTCTCTACTTGCT 7 18 10 1.1.2.3.10.18 BCBC-5B-0 14132702 P219952 Egfl7 ProximalPromoter P219952 ProximalPromoter Unique Tile chr2:26404936-26405865 (+) NM_178444;NM_198724;NM_198725; + 12 26405877 353156 Egfl7 VE-statin|Zneu1 EGF-like domain 7 MGI:2449923 Mm.268933 2 2 B EGFL7 51162 NM_026212 - 20354 26426219 67512 Agpat2 0 CTCTAGGTGCCTTCGCTTACAGA AAGAAGGGTGGCTTTTTATGCTC 7 18 11 1.1.2.3.11.18 BCBC-5B-0 14132721 P221074 Apba3 Enhancer P221074 Enhancer Unique Tile chr10:80674012-80674972 (-) NM_018758 + 2644 80671368 57267 Apba3 AW208791|Mint-3|X11gamma|lin-10|mint3 amyloid beta (A4) precursor protein-binding, family A, member 3 MGI:1888527 Mm.391560 10 10 C1 APBA3 9546 NM_025317 - 3957 80670055 66047 Mrpl54 0 CAAGCACTCACCTCCCTACAGTT CAGAACCATGAGTTTCTTGAGCA 7 18 12 1.1.2.3.12.18 BCBC-5B-0 14132740 P221824 Kif13a ProximalPromoter P221824 ProximalPromoter Unique Tile chr13:46941104-46941915 (-) NM_010617 - 414 46940690 16553 Kif13a 4930505I07Rik|KIAA4109|mKIAA4109 kinesin family member 13A MGI:1098264 Mm.342703 13 13 B1 KIF13A 63971 0 TGACTCAGTGGTACAGCGGTAGA GGACGTCACAGACACCTCCTG 7 18 13 1.1.2.3.13.18 BCBC-5B-0 14132759 P222946 Fpr-rs6 ProximalPromoter P222946 ProximalPromoter Unique Tile chr17:19887766-19888847 (-) NM_177316 - 28 19887794 321020 Fpr-rs6 MGC129278|MGC129279 formyl peptide receptor, related sequence 6 MGI:2448176 Mm.377882 17 17 A3.2 0 ATGGCTATGGGGATAGGTCACTT TTCTGAGGTATGGAGAAGTTGGC 7 18 14 1.1.2.3.14.18 BCBC-5B-0 14132778 P223786 Olfr1079 ProximalPromoter P223786 ProximalPromoter Unique Tile chr2:86339697-86340782 (-) NM_146407 - 55 86339752 258402 Olfr1079 MOR189-1 olfactory receptor 1079 MGI:3030913 Mm.271333 2 - NM_146409 - 18195 86358977 258404 Olfr1080 0 AGCAAAGACTCCCTGGATAGCTT ATGCCCCTGAGGATAAATTCAGT 7 18 15 1.1.2.3.15.18 BCBC-5B-0 14132797 P224536 1600012H06Rik ProximalPromoter P224536 ProximalPromoter Unique Tile chr17:14678924-14679760 (+) NM_026451 + 1 14679759 67912 1600012H06Rik - RIKEN cDNA 1600012H06 gene MGI:1915162 Mm.390949 17 17 A2 NM_175173 - 60 14679700 71682 Wdr27 1 TGTCCATTGAGCAGGAGTCAATA TAAGGGACCGGAAGTGAGGTAAC 7 18 16 1.1.2.3.16.18 BCBC-5B-0 14132816 P225658 2610033H07Rik ProximalPromoter P225658 ProximalPromoter Unique Tile chr5:35010703-35011680 (+) NM_029278 - 33755 34976948 75416 2610033H07Rik - RIKEN cDNA 2610033H07 gene MGI:1922666 Mm.40292 5 5 B2 C4orf9 8602 NM_019497 + 32894 34977809 14772 Gprk2l 0 TGGCAGCAGTCTAATCTCCTTTC GGAGAATTCTGCTTCAGATTCCA 7 18 17 1.1.2.3.17.18 BCBC-5B-0 14132835 P226610 Pqlc3 Pdx1 P226610 Pdx1 Unique Tile chr12:17062379-17063291 (+) NM_172574 - 36843 17025536 217430 Pqlc3 C78076|E030024M05Rik PQ loop repeat containing MGI:2444067 Mm.379451 12 12 A1.1 PQLC3 130814 2 TTCATCCTTTCTCCCAGACTCAG AAGTTCAGTTCTCAGCAACCACA 7 18 18 1.1.2.3.18.18 BCBC-5B-0 14132854 P226874 Pdx1 P226874 Pdx1 Unique Tile chr16:87064742-87065662 (+) 0 AGCCCAGACTCACAAGAGACAAC AAGTTACATGACCACAGGGCAGT 7 18 19 1.1.2.3.19.18 BCBC-5B-0 14132873 P002380 Stratagene PCR 5 P002380 Spike Control Negative Stratagene PCR 5 7 18 20 1.1.2.3.20.18 BCBC-5B-0 14132513 P211124 PufferfishHuman P211124 PufferfishHuman Unique Tile chr7:115546023-115547001 (+) 0 GCTCAGGGAGGAAGTGACATCTA GCACATTGTCAAAGCAAAGAAGA 7 19 1 1.1.2.3.1.19 BCBC-5B-0 14132532 P211964 PufferfishHuman P211964 PufferfishHuman Unique Tile chr7:109022697-109023634 (+) 1 ATATAACCCAGCAGGTGGGAACT ACAGGGTAGAGGTCTGTGTGGAG 7 19 2 1.1.2.3.2.19 BCBC-5B-0 14132551 P212714 miRNA P212714 miRNA Unique Tile chr10:93392226-93393245 (+) mmu-mir-331 0 AACAGAACCTGGGAGGTAAAAGC GTTCTCAAAACAGCCTTCTTCCA 7 19 3 1.1.2.3.3.19 BCBC-5B-0 14132570 P213836 Tsc22d3 Enhancer P213836 Enhancer Unique Tile chrX:135888132-135889207 (-) NM_010286 - 310 135889517 14605 Tsc22d3 DIP|Dsip1|Gilz|TSC-22R TSC22 domain family 3 MGI:1196284 Mm.22216 X X F1 TSC22D3 1831 0 AACCACTGACTCTAACTCGAGCG ACTTTCTGTTTCCTCCCAACTCC 7 19 4 1.1.2.3.4.19 BCBC-5B-0 14132589 P214586 Slc35b1 Enhancer P214586 Enhancer Unique Tile chr11:95196786-95197841 (+) NM_016752 + 3170 95201011 110172 Slc35b1 Ugalt2 solute carrier family 35, member B1 MGI:1343133 Mm.4593 11 11 D|11 55.5 cM SLC35B1 10237 NM_025287 + 32361 95230202 20747 Spop 0 TGTCCTGACAAGAACAAAGTCCA TGTGTAAGCTCTGCAATACGGAA 7 19 5 1.1.2.3.5.19 BCBC-5B-0 14132608 P215426 Lrrc41 Enhancer P215426 Enhancer Unique Tile chr4:115574201-115575110 (-) NM_153521 + 805 115573396 230654 Lrrc41 AA409966|AW555107|D630045E04Rik|D730026A16Rik|MGC38941|MUF1 leucine rich repeat containing 41 MGI:2441984 Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655; Mm.260786; Mm.3655 4 4 D1 LRRC41 10489 NM_025641 - 1221 115572980 66576 Uqcrh 2 CACAATCTCCTCTGCTCACACAG CAGACCTCGCTGCTAAACTGAG 7 19 6 1.1.2.3.6.19 BCBC-5B-0 14132627 P216548 Ptges2 Enhancer P216548 Enhancer Unique Tile chr2:32214125-32215092 (+) NM_133783 + 3174 32218266 96979 Ptges2 0610038H10Rik|C79137|GBF-1|GBF1|MGC6845|PGE2 prostaglandin E synthase 2 MGI:1917592 Mm.28048 2 2 B PTGES2 80142 NM_008491 - 4377 32209748 16819 Lcn2 0 GCCCAGATATGATTACGGGTACA ACTCCTCAGAACCCAGAAGTGTG 7 19 7 1.1.2.3.7.19 BCBC-5B-0 14132646 P217298 Mier3 Enhancer P217298 Enhancer Unique Tile chr13:112807763-112808676 (+) NM_172593 + 27 112808703 218613 Mier3 5730509D14|AU015422|D130064H19Rik|MGC117989 mesoderm induction early response 1, family member 3 MGI:2442317 Mm.31012 13 13 D2.2 MIER3 166968 1 GACTCTCTACCCCGAAGCCTG TGTGAGGTTGAATCCTGTAGCAA 7 19 8 1.1.2.3.8.19 BCBC-5B-0 14132665 P218338 Ankrd17 ProximalPromoter P218338 ProximalPromoter Unique Tile chr5:91414896-91415976 (-) NM_030886;NM_198010; - 26489 91441385 81702 Ankrd17 4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697 ankyrin repeat domain 17 MGI:1932101 Mm.245522 5 - ANKRD17 26057 0 CAGCTTGTATTCTATGCCCTGCT CACCATGTTTTATCAAACTGCCA 7 19 9 1.1.2.3.9.19 BCBC-5B-0 14132684 P219178 Mak Enhancer P219178 Enhancer Unique Tile chr13:41085554-41086507 (-) NM_008547 - 4107 41090614 17152 Mak A930010O05Rik male germ cell-associated kinase MGI:96913 Mm.8149 13 13 A3.3|13 23.0 cM MAK 4117 NM_008104 - 34485 41120992 107889 Gcm2 0 GACTGCCACAGTCCACAGTACAC ACTCTGAAAAGAGTTTTGCGGTG 7 19 10 1.1.2.3.10.19 BCBC-5B-0 14132703 P219928 Oas1f ProximalPromoter P219928 ProximalPromoter Unique Tile chr5:121107046-121108031 (+) NM_145153 + 48 121107983 243262 Oas1f - 2'-5' oligoadenylate synthetase 1F MGI:2180855 Mm.105369 5 5 F|5 67.0 cM NM_145228 + 14007 121122038 246729 Oas1h 0 TAGCTGACAGACACACCAGAAGG GTGCTGCTAAGATCCTTCACCAT 7 19 11 1.1.2.3.11.19 BCBC-5B-0 14132722 P221050 Atpaf1 ProximalPromoter P221050 ProximalPromoter Unique Tile chr4:115282072-115283061 (+) NM_181040 + 146 115282915 230649 Atpaf1 6330547J17Rik|AI593252|ATP11|ATP11p ATP synthase mitochondrial F1 complex assembly factor 1 MGI:2180560 Mm.109600; Mm.392590; Mm.109600; Mm.392590; Mm.109600; Mm.392590; Mm.109600; Mm.392590; Mm.109600; Mm.392590 4 4 D1 ATPAF1 64756 NM_175308 + 42962 115326023 100465 Mobkl2c 1 GACTTCCATATCTCCCAATGCAC CACACAGGCCTCGGTAGAGAC 7 19 12 1.1.2.3.12.19 BCBC-5B-0 14132741 P221800 Olfr126 ProximalPromoter P221800 ProximalPromoter Unique Tile chr17:37457804-37458744 (+) NM_146890 + 98 37458646 258892 Olfr126 MOR218-1 olfactory receptor 126 MGI:2177509 Mm.377736 17 17 B1 NM_146290 + 14751 37443053 258287 Olfr125 0 AGGCCATCAAGTTAGACACCAAA AGCAAAAACAGCAAAGCCTGTAA 7 19 13 1.1.2.3.13.19 BCBC-5B-0 14132760 P222640 1700012B09Rik Enhancer P222640 Enhancer Unique Tile chr9:14524066-14525064 (-) NM_029306 - 2643 14521423 69325 1700012B09Rik 1700007P19Rik|MGC107243 RIKEN cDNA 1700012B09 gene MGI:1916575 Mm.240403 9 9 A2 NM_019683 - 8293 14533357 56503 Ankrd49 0 CTTGACTTCATGGTCTCCTGCTT GTTTCCTCTTTTCTCCAACAGCA 7 19 14 1.1.2.3.14.19 BCBC-5B-0 14132779 P223762 Trpm2 ProximalPromoter P223762 ProximalPromoter Unique Tile chr10:77373045-77374012 (-) NM_138301 - 2459 77370586 28240 Trpm2 9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7 transient receptor potential cation channel, subfamily M, member 2 MGI:1351901 Mm.276762 10 10 C1|10 41.7 cM TRPM2 7226 NM_026431 + 7766 77381778 67884 1810043G02Rik 0 CTGGGATTAGAGGTATGCACCAC AGCCGCAACTAACTAAGAACGTG 7 19 15 1.1.2.3.15.19 BCBC-5B-0 14132798 P224512 Arfip2 ProximalPromoter P224512 ProximalPromoter Unique Tile chr7:105514143-105515165 (-) NM_029802 - 7 105514136 76932 Arfip2 2310002N04Rik|POR|Por1 ADP-ribosylation factor interacting protein 2 MGI:1924182 Mm.41637 7 7 F1 ARFIP2 23647 NM_019502 + 217 105514360 14356 Fxc1 1 GTAAAAACGGGTTTATTGGCTCC TCCTAGCAGCAGGTCAGAGATTT 7 19 16 1.1.2.3.16.19 BCBC-5B-0 14132817 P225634 Ube1dc1 ProximalPromoter P225634 ProximalPromoter Unique Tile chr9:103949175-103949930 (+) NM_025692 - 27711 103921464 66663 Ube1dc1 5730525G14Rik|AW240750 ubiquitin-activating enzyme E1-domain containing 1 MGI:1913913 Mm.224935 9 9 F1 UBE1DC1 79876 NM_175324 + 27092 103922083 102632 Acad11 2 TAATTCAGCTAGCACTTGGGAGG AGGGGATGGACAAGTGATTACAA 7 19 17 1.1.2.3.17.19 BCBC-5B-0 14132836 P226676 Pdx1 P226676 Pdx1 Unique Tile chr13:119711178-119712092 (+) 0 TCCAAGACTGCAATGACTCAGAA TAATGTTTGCATGGCAAGTATGC 7 19 18 1.1.2.3.18.19 BCBC-5B-0 14132855 P226850 Pdx1 P226850 Pdx1 Unique Tile chr4:151389375-151390294 (+) 2 GTACCCTTAGAGGCCAGAAGAGG CAGGTTTCGGTGTGGCTAAAG 7 19 19 1.1.2.3.19.19 BCBC-5B-0 14132874 P002356 Stratagene PCR 3 P002356 Spike Control Negative Stratagene PCR 3 7 19 20 1.1.2.3.20.19 BCBC-5B-0 14132875 P211748 PufferfishHuman P211748 PufferfishHuman Unique Tile chrX:89661691-89662790 (-) 0 TTCCTGTCACCGATACCCTCTAA CAAAACGAGAAGACAATTAGCCG 8 1 1 1.1.2.4.1.1 BCBC-5B-0 14132894 P212498 miRNA P212498 miRNA Unique Tile chr1:164054325-164055332 (-) mmu-mir-199a-2 0 TAAGTGCGTTTGCATTGTCTGAT AGTTCCCTAGTCTGCTGCAAATG 8 1 2 1.1.2.4.2.1 BCBC-5B-0 14132913 P213620 Amy2 Enhancer P213620 Enhancer Inter Repeats Tile chr3:113390867-113391783 (-) NM_009669 - 4124 113386743 11723 Amy2 Amy-2 amylase 2, pancreatic Mm.331313 3 3 F3|3 50.0 cM 0 CACAAGCCATTGATGTTCTGTTC ACAGTCCATGCTCTCCCAATAAA 8 1 3 1.1.2.4.3.1 BCBC-5B-0 14132932 P214460 Vldlr Enhancer P214460 Enhancer Unique Tile chr19:27285431-27286345 (+) NM_013703 + 751 27284680 22359 Vldlr AA408956|AI451093|AW047288 very low density lipoprotein receptor MGI:98935 Mm.392988; Mm.393599; Mm.4141; Mm.392988; Mm.393599; Mm.4141; Mm.392988; Mm.393599; Mm.4141; Mm.392988; Mm.393599; Mm.4141; Mm.392988; Mm.393599; Mm.4141; Mm.392988; Mm.393599; Mm.4141; Mm.392988; Mm.393599; Mm.4141; Mm.392988; Mm.393599; Mm.4141; Mm.392988; Mm.393599; Mm.4141; Mm.392988; Mm.393599; Mm.4141; Mm.392988; Mm.393599; Mm.4141; Mm.392988; Mm.393599; Mm.4141; Mm.392988; Mm.393599; Mm.4141; Mm.392988; Mm.393599; Mm.4141; Mm.392988; Mm.393599; Mm.4141; Mm.392988; Mm.393599; Mm.4141 19 19 C1|19 20.0 cM VLDLR 7436 0 AAGAGTGGCTTTCAACTGGACTG GATTCTAGCGTCACGATACCTGG 8 1 4 1.1.2.4.4.1 BCBC-5B-0 14132951 P215210 1500035H01Rik Enhancer P215210 Enhancer Unique Tile chr9:44524139-44525156 (+) NM_023831 + 78 44524061 76568 1500035H01Rik AA408110|AI663846|R75047|c11orf2 RIKEN cDNA 1500035H01 gene MGI:1923818 Mm.278597 9 9 A5.2 C11orf60 56912 NM_145985 - 5328 44518811 213827 Arcn1 0 ATAGAAGAAACGGATCCAGAGGG GTGGTTCACAGAAAAACATGCAA 8 1 5 1.1.2.4.5.1 BCBC-5B-0 14132970 P216332 Rab34 Enhancer P216332 Enhancer Unique Tile chr11:78005759-78006667 (+) NM_033475 + 292 78005467 19376 Rab34 AI326479|Rah|Rah1 RAB34, member of RAS oncogene family MGI:104606 Mm.275864 11 11 B5|11 44.89 cM RAB34 83871 NM_207523 - 6005 77999754 268449 Rpl23a 0 CTCTCAGTGCCTGAAGAAAGAGG AGAAAGGAGAGCAGAACCCAGAT 8 1 6 1.1.2.4.6.1 BCBC-5B-0 14132989 P217082 BC026432 Enhancer P217082 Enhancer Unique Tile chr7:127137748-127138760 (-) NM_146202 - 1286 127136462 233890 BC026432 MGC31345 cDNA sequence BC026432 MGI:2384582 Mm.23031 7 7 F3 FLJ23436 79724 NM_175560 - 28384 127167144 269997 6430604K15Rik 0 AACGGGGGAGTGAATACAAATCT CACTGAAGAGTTCCAGAAGGGAA 8 1 7 1.1.2.4.7.1 BCBC-5B-0 14133008 P217922 Alg8 Enhancer P217922 Enhancer Unique Tile chr7:97246923-97247867 (+) NM_199035 + 104 97246819 381903 Alg8 AI447372|Gm1089|MGC74399 asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase) MGI:2141959 Mm.279683 7 7 E1 ALG8 79053 NM_024220 + 27416 97275283 68197 Ndufc2 0 TAGTAAGGACTTGCAGAGTCGGG CAAGTTGCTGCCTATGTGTCAAG 8 1 8 1.1.2.4.8.1 BCBC-5B-0 14133027 P218962 Olfr530 ProximalPromoter P218962 ProximalPromoter Unique Tile chr7:140224970-140225902 (-) NM_146519 - 42 140224928 258512 Olfr530 MOR252-2 olfactory receptor 530 MGI:3030364 Mm.377545 7 - NM_146953 - 26462 140252364 258955 Olfr531 0 GTTGGAAAGTCCTGTCACCTGTC GCCTCTGGCAAAAGAAGTACTGA 8 1 9 1.1.2.4.9.1 BCBC-5B-0 14133046 P219712 Olfr108 ProximalPromoter P219712 ProximalPromoter Unique Tile chr17:37052630-37053671 (+) NM_146465 + 96 37053575 258457 Olfr108 MOR156-5 olfactory receptor 108 MGI:2177491 Mm.377511 17 17 B1 NM_146835 + 20589 37074260 258832 Olfr109 0 ACTTACAGTCGGCAGCTCAATTC CCACTTCTCTGGTTCTCTGGGTA 8 1 10 1.1.2.4.10.1 BCBC-5B-0 14133065 P220834 Hist1h2ak ProximalPromoter P220834 ProximalPromoter Unique Tile chr13:21761278-21762191 (-) NM_178183 - 14 21761292 319169 Hist1h2ak - histone 1, H2ak MGI:2448297 Mm.370338 13 - HIST1H2AK 8330 NM_178201 + 309 21761587 319187 Hist1h2bn 0 TGAACCTCTGGAATTGACACCTT GCCTCTTCCTGACATGGTAGAAC 8 1 11 1.1.2.4.11.1 BCBC-5B-0 14133084 P221674 D10Ertd322e ProximalPromoter P221674 ProximalPromoter Unique Tile chr10:94931672-94932692 (-) NM_026065 - 57 94931615 67270 D10Ertd322e 2700009F22Rik|2900055D03Rik|Mrpl42 DNA segment, Chr 10, ERATO Doi 322, expressed MGI:1196413 Mm.30008 10 10 C2|10 39.0 cM NM_080560 + 12157 94944849 93765 Ube2n 0 ATGTTAGATTTCCTTGGCCCTGT GGAGTTGTAGTCTCTGCCAGGAA 8 1 12 1.1.2.4.12.1 BCBC-5B-0 14133103 P222424 B330016D10Rik ProximalPromoter P222424 ProximalPromoter Unique Tile chr4:140817175-140818138 (+) NM_177163 + 126 140818264 320456 B330016D10Rik - RIKEN cDNA B330016D10 gene MGI:2444063 Mm.32859 4 4 E1 NM_019763 - 22768 140794407 56381 Spen 1 CTGGCTTTCCACACTAATGGTTC GTGCTCTCTCACAATGGAAAGGT 8 1 13 1.1.2.4.13.1 BCBC-5B-0 14133122 P223546 B4galnt2 Enhancer P223546 Enhancer Unique Tile chr11:95729906-95730916 (-) NM_008081 - 45 95730961 14422 B4galnt2 Dlb-1|Dlb1|Galgt2|Ggm3 beta-1,4-N-acetyl-galactosaminyl transferase 2 MGI:1342058 Mm.340702 11 11 D|11 55.7 cM B4GALNT2 124872 0 CTTCCAGGTAGTGAGTGTCCCTG TCCTCCACTCTCTCCCTAAATCC 8 1 14 1.1.2.4.14.1 BCBC-5B-0 14133141 P224296 Dhx36 ProximalPromoter P224296 ProximalPromoter End Repeat Tile chr3:62589984-62591076 (-) NM_028136 - 4933 62594917 72162 Dhx36 2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488 DEAH (Asp-Glu-Ala-His) box polypeptide 36 MGI:1919412 Mm.224233; Mm.395415; Mm.224233; Mm.395415; Mm.224233; Mm.395415; Mm.224233; Mm.395415; Mm.224233; Mm.395415; Mm.224233; Mm.395415; Mm.224233; Mm.395415; Mm.224233; Mm.395415; Mm.224233; Mm.395415; Mm.224233; Mm.395415; Mm.224233; Mm.395415; Mm.224233; Mm.395415; Mm.224233; Mm.395415; Mm.224233; Mm.395415; Mm.224233; Mm.395415; Mm.224233; Mm.395415 3 3 E1 DHX36 170506 0 TACCACAGGGACATAAAAGCACA ACAATTTGCTCTTCTCGACGTTC 8 1 15 1.1.2.4.15.1 BCBC-5B-0 14133160 P225136 Olfr1251 ProximalPromoter P225136 ProximalPromoter Unique Tile chr2:89468762-89469743 (-) NM_001011529 - 39 89468723 259145 Olfr1251 MOR231-15P olfactory receptor 1251 MGI:3031085 Mm.376637 2 2 E1 NM_146965 - 10484 89458278 258967 Olfr1250 0 GCATTTTCTTTGAATGTCCTGCT GGAGAATAAGACCTCCCATGACC 8 1 16 1.1.2.4.16.1 BCBC-5B-0 14133179 P225980 Gprc5c Pdx1 P225980 Pdx1 Unique Tile chr11:114690553-114691452 (+) NM_147217 + 3020 114687533 70355 Gprc5c 1110028I06Rik|3200002M13Rik|MGC11976|MGC6786 G protein-coupled receptor, family C, group 5, member C MGI:1917605 Mm.242413 11 11 E2 GPRC5C 55890 NM_170758 + 14678 114706130 217303 Cd300a 0 GGAAGGTTTCACAGAGTCCCAAT CTCAGCTCACCAGGCAGTAAGTA 8 1 17 1.1.2.4.17.1 BCBC-5B-0 14133198 P226346 Plekhj1 Pdx1 P226346 Pdx1 Unique Tile chr10:80184133-80185038 (+) NM_023900 - 16315 80201353 78670 Plekhj1 9530063M10Rik pleckstrin homology domain containing, family J member 1 MGI:1925920 Mm.41479 10 10 C1 PLEKHJ1 55111 NM_013651 + 16674 80201712 20222 Sf3a2 0 GCTCCTCAGCCTTTGACCACTAT ACTAGCAACATGGGAACATTCGT 8 1 18 1.1.2.4.18.1 BCBC-5B-0 14133217 P002332 Stratagene PCR 1 P002332 Spike Control Negative Stratagene PCR 1 8 1 19 1.1.2.4.19.1 BCBC-5B-0 14133236 P003388 Cy3 Anchor P003388 Anchor Control Positive Cy3 Anchor 8 1 20 1.1.2.4.20.1 BCBC-5B-0 14132876 P211724 PufferfishHuman P211724 PufferfishHuman Unique Tile chr4:83536025-83537027 (-) 0 GACAGATCTGGGTCCTAAGCAGA CTCCAAAGCTGGGAGGATAAACT 8 2 1 1.1.2.4.1.2 BCBC-5B-0 14132895 P212474 miRNA P212474 miRNA Unique Tile chr1:187011093-187012105 (+) mmu-mir-194-1 2 GGAGGGATGTTCTTTACTGGCTT CCTCCAGTTTGTCTCCTGAGTGT 8 2 2 1.1.2.4.2.2 BCBC-5B-0 14132914 P213314 Plscr2 Enhancer P213314 Enhancer Unique Tile chr9:92074741-92075678 (+) NM_008880 + 3812 92079490 18828 Plscr2 - phospholipid scramblase 2 MGI:1270860 Mm.10306 9 9 E3.3 NM_011636 + 7944 92066797 22038 Plscr1 0 AAGAATAGAGAGGCGGAGCAAAC ATGGGAAACGAAAGACAAAGTCA 8 2 3 1.1.2.4.3.2 BCBC-5B-0 14132933 P214436 Pou5f1 Enhancer P214436 Enhancer Unique Tile chr17:35117761-35118314 (+) NM_013633 + 3637 35114124 18999 Pou5f1 Oct-3|Oct-3/4|Oct-4|Oct3|Oct3/4|Oct4|Otf-3|Otf-4|Otf3|Otf3-rs7|Otf3g|Otf4 POU domain, class 5, transcription factor 1 MGI:101893 Mm.17031 17 17 B1|17 19.23 cM POU5F1 5460 NM_025674 - 6493 35124807 106795 Tcf19 2 CAGGCTCTCTCCTTCTGAGTCAC AGATCATAAGCTCTGGGATGCTG 8 2 4 1.1.2.4.4.2 BCBC-5B-0 14132952 P215186 Pcm1 Enhancer P215186 Enhancer Unique Tile chr8:42755484-42756503 (+) NM_023662 + 16893 42738591 18536 Pcm1 2600002H09Rik|9430077F19Rik|C030044G17Rik pericentriolar material 1 MGI:1277958 Mm.117896; Mm.392434; Mm.117896; Mm.392434; Mm.117896; Mm.392434; Mm.117896; Mm.392434; Mm.117896; Mm.392434; Mm.117896; Mm.392434; Mm.117896; Mm.392434; Mm.117896; Mm.392434; Mm.117896; Mm.392434; Mm.117896; Mm.392434; Mm.117896; Mm.392434; Mm.117896; Mm.392434; Mm.117896; Mm.392434; Mm.117896; Mm.392434; Mm.117896; Mm.392434; Mm.117896; Mm.392434; Mm.117896; Mm.392434 8 8 A4|8 22.5 cM PCM1 5108 NM_145594 - 41543 42713941 234199 Fgl1 0 AGGGGCAAAATTTCCTAGAAGTG TCCAAGACATTTTCACACACAA 8 2 5 1.1.2.4.5.2 BCBC-5B-0 14132971 P216308 Wasf1 Enhancer P216308 Enhancer Unique Tile chr10:40572090-40573141 (+) NM_031877 + 100 40571990 83767 Wasf1 AI195380|AI838537|Scar|WAVE|WAVE-1 WASP family 1 MGI:1890563 Mm.41353 10 10 B1|10 25.0 cM WASF1 8936 1 TGCGAATCCTAAGTTCAGAGACC GGAAAAGAAAAATGGGAAAGGTG 8 2 6 1.1.2.4.6.2 BCBC-5B-0 14132990 P217148 4922503N01Rik Enhancer P217148 Enhancer Unique Tile chr4:108905299-108906201 (+) NM_153392 + 209 108905090 230603 4922503N01Rik MGC37599 RIKEN cDNA 4922503N01 gene MGI:2444350 Mm.33091 4 4 C7 C1orf34 22996 0 CTTCTGGGTCCCAACTTTCTCTC CTTGTTCCATGTCTGCCTTTTCT 8 2 7 1.1.2.4.7.2 BCBC-5B-0 14133009 P217898 Rkhd1 Enhancer P217898 Enhancer Unique Tile chr10:79788776-79789724 (-) NM_198615 - 232 79789956 237400 Rkhd1 BC059858|MGC69704 ring finger (C3HC4 type) and KH domain containing 1 MGI:2681847 Mm.268389 10 10 C1 NM_013595 - 12771 79802495 17192 Mbd3 1 ACGTATGTATTGGTGGGAGGAAG TTGCAATTCAAACCACTCACATC 8 2 8 1.1.2.4.8.2 BCBC-5B-0 14133028 P218938 Olfr1189 ProximalPromoter P218938 ProximalPromoter Unique Tile chr2:88391670-88392717 (+) NM_146772 + 73 88392644 258768 Olfr1189 MOR237-2 olfactory receptor 1189 MGI:3031023 2 2 D NM_146919 + 31361 88360309 258921 Olfr1188 2 ACATGGCCTAGTTGGTCATCACT ATATTTTCCTCAGCTCTGGGTCC 8 2 9 1.1.2.4.9.2 BCBC-5B-0 14133047 P219688 Olfr292 ProximalPromoter P219688 ProximalPromoter Unique Tile chr7:86569271-86570198 (+) NM_146620 + 6097 86564101 258613 Olfr292 MOR220-2 olfactory receptor 292 MGI:3030126 Mm.419160 7 - NM_001011752 + 29847 86539424 257906 Olfr293 0 ACATGGTGTGGAATTTCATAGGG TCTGGAAGAGAAAAGCAGCAACT 8 2 10 1.1.2.4.10.2 BCBC-5B-0 14133066 P220528 Slc7a5 Enhancer P220528 Enhancer Unique Tile chr8:124792063-124793058 (-) NM_011404 - 704 124793762 20539 Slc7a5 D0H16S474E|TA1 solute carrier family 7 (cationic amino acid transporter, y+ system), member 5 MGI:1298205 Mm.27943 8 8 E1|8 65.0 cM SLC7A5 8140 NM_001033485 + 864 124793922 407789 BC048644 2 CAGTATCCCTCCATCTGTCCATC ACTACAGAGCAGAGTGGGTGGTC 8 2 11 1.1.2.4.11.2 BCBC-5B-0 14133085 P221650 Grm8 Enhancer P221650 Enhancer Unique Tile chr6:28077264-28078167 (-) NM_008174 - 1059 28076205 14823 Grm8 A230002O04|Gprc1h|mGluR8 glutamate receptor, metabotropic 8 MGI:1351345 Mm.320732 6 6 A3 GRM8 2918 0 TTTCCCTTGATGTCACCATTCTT GGAGATTGGAAAGCTCCTTCATT 8 2 12 1.1.2.4.12.2 BCBC-5B-0 14133104 P222400 Abcd2 Enhancer P222400 Enhancer Unique Tile chr15:91017580-91018488 (-) NM_011994 - 1019 91019507 26874 Abcd2 ABC39|ALDL1|ALDR|ALDRP ATP-binding cassette, sub-family D (ALD), member 2 MGI:1349467 Mm.295456 15 15 E-F ABCD2 225 1 CTCCCGAATCATAGCCAATGTAG CTCCTCTCTATCTTGCCAAACCA 8 2 13 1.1.2.4.13.2 BCBC-5B-0 14133123 P223522 Atp2b2 Enhancer P223522 Enhancer Unique Tile chr6:113884313-113885246 (-) NM_009723;NM_001036684; - 27160 113857153 11941 Atp2b2 D6Abb2e|PMCA2|dfw|wms|wri ATPase, Ca++ transporting, plasma membrane 2 MGI:105368 Mm.321755 6 6 E3|6 49.5 cM ATP2B2 491 0 ACTTGTACCCTCTCTCCTGTCCC GATCTCGAGCTGACATGGTTTCT 8 2 14 1.1.2.4.14.2 BCBC-5B-0 14133142 P224362 Ctsj Enhancer P224362 Enhancer Unique Tile chr13:61012465-61013368 (-) NM_012007 - 2166 61015534 26898 Ctsj CATP|CatRLP|Ctsp|MGC117662 cathepsin J MGI:1349426 Mm.31948 13 13 B2|13 35.5 cM NM_029636 - 36852 61050220 104002 Ctsq 0 TGGAGAGAGGAAGGCTATGTGAC TACATGGAAACCATCAGCTCAGA 8 2 15 1.1.2.4.15.2 BCBC-5B-0 14133161 P225112 Cryba4 ProximalPromoter P225112 ProximalPromoter Unique Tile chr5:112492833-112493828 (-) NM_021351 - 28 112492805 12959 Cryba4 - crystallin, beta A4 MGI:102716 Mm.40324 5 5 F CRYBA4 1413 NM_023695 + 2295 112496123 12960 Crybb1 0 CACAACTGAGGCTTAGAGGCATT ACAAGGTCAGGGCTCTTATAGGC 8 2 16 1.1.2.4.16.2 BCBC-5B-0 14133180 P225956 4733401H18Rik Pdx1 P225956 Pdx1 Unique Tile chr9:108425062-108425919 (+) NM_023247 - 383 108425445 66706 4733401H18Rik - RIKEN cDNA 4733401H18 gene MGI:1913956 Mm.29471 9 9 F2 C3orf60 25915 NM_026378 + 2075 108427994 67789 Dalrd3 0 GGGACAGAGTTGTCTGTCTCAAA TCTAGTCCAGCGGATAGAGAACG 8 2 17 1.1.2.4.17.2 BCBC-5B-0 14133199 P226322 March2 Pdx1 P226322 Pdx1 Unique Tile chr17:33318895-33319799 (+) NM_145486 - 5553 33325352 224703 March2 9530046H09Rik|MGC7259 membrane-associated ring finger (C3HC4) 2 MGI:1925915 Mm.374865 17 17 B1 MARCH2 51257 NM_029804 - 26805 33292090 76936 Hnrpm 0 GAGGGCCTGAGACATATAAAGCA TAAGAGTCGTGCCTGATGGTACA 8 2 18 1.1.2.4.18.2 BCBC-5B-0 14133218 P226586 Pdx1 P226586 Pdx1 Unique Tile chr4:153643386-153644297 (+) 0 ACTGGACAAGAACATAGACCCCA ACTGACACATGTCTCTGAGCTGG 8 2 19 1.1.2.4.19.2 BCBC-5B-0 14133237 P003340 Cy3 Anchor P003340 Anchor Control Positive Cy3 Anchor 8 2 20 1.1.2.4.20.2 BCBC-5B-0 14132877 P211700 PufferfishHuman P211700 PufferfishHuman Unique Tile chr2:74010010-74010938 (+) 0 TGACTGCTAGTCTTTGGTCTGGA TTCAGTTTTCTGTTGCTGCTTCA 8 3 1 1.1.2.4.1.3 BCBC-5B-0 14132896 P212540 miRNA P212540 miRNA Unique Tile chr12:112583448-112584368 (-) mmu-mir-203 0 ATTGAACCTGGCATTCAGTCATT GCTCTCACTTTGAACTGCTCTCC 8 3 2 1.1.2.4.2.3 BCBC-5B-0 14132915 P213290 Pecam1 Enhancer P213290 Enhancer Unique Tile chr11:106526554-106527453 (-) NM_001032378;NM_008816; - 3704 106531157 18613 Pecam1 Cd31|MGC102160|PECAM-1|Pecam platelet/endothelial cell adhesion molecule 1 MGI:97537 Mm.343951 11 11 E1 PECAM1 5175 NM_001033435 + 39904 106567357 380732 Gm885 0 GGGCCCCTTGATTAGTTTAGAGA TACTGCAGGCTCAGGATTAAAGC 8 3 3 1.1.2.4.3.3 BCBC-5B-0 14132934 P214412 Hmbs Enhancer P214412 Enhancer Unique Tile chr9:44099118-44100140 (-) NM_013551 - 3947 44095171 15288 Hmbs PBGD|T25658|Ups|Uros1 hydroxymethylbilane synthase MGI:96112 Mm.247676; Mm.389185; Mm.247676; Mm.389185; Mm.247676; Mm.389185; Mm.247676; Mm.389185; Mm.247676; Mm.389185; Mm.247676; Mm.389185; Mm.247676; Mm.389185; Mm.247676; Mm.389185; Mm.247676; Mm.389185; Mm.247676; Mm.389185; Mm.247676; Mm.389185 9 9 A5.2|9 26.0 cM HMBS 3145 NM_027889 - 12525 44112665 71732 Vps11 2 TTTCTGTCTCCTGCCTGTAGTCC ATTTATAGGCTCTGGGAGCAAGG 8 3 4 1.1.2.4.4.3 BCBC-5B-0 14132953 P215162 Ing2 Enhancer P215162 Enhancer Unique Tile chr8:49171385-49172332 (-) NM_023503 - 1624 49173956 69260 Ing2 2810011M06Rik|Ing1l|P33ING2 inhibitor of growth family, member 2 MGI:1916510 Mm.430733 8 8 B2 ING2 3622 NM_172407 - 40384 49212716 70925 4921511I16Rik 0 CATGTGTCACTTCCGGACTTCT GCAGAAGCTAGACCACGATTTGT 8 3 5 1.1.2.4.5.3 BCBC-5B-0 14132972 P216002 Tpx2 Enhancer P216002 Enhancer Unique Tile chr2:152541012-152541946 (+) NM_028109 + 1509 152539503 72119 Tpx2 2610005B21Rik|DIL2|REPP86|p100 TPX2, microtubule-associated protein homolog (Xenopus laevis) MGI:1919369 Mm.291583; Mm.407737; Mm.291583; Mm.407737; Mm.291583; Mm.407737; Mm.291583; Mm.407737; Mm.291583; Mm.407737; Mm.291583; Mm.407737; Mm.291583; Mm.407737; Mm.291583; Mm.407737; Mm.291583; Mm.407737; Mm.291583; Mm.407737; Mm.291583; Mm.407737; Mm.291583; Mm.407737; Mm.291583; Mm.407737 2 2 H2 TPX2 22974 NM_009743 - 17889 152523123 12048 Bcl2l1 0 ATTGGGCCAACTAATTGACCTTT TAGCATAAACTTGGCCAAAGGAA 8 3 6 1.1.2.4.6.3 BCBC-5B-0 14132991 P217124 Abcc6 Enhancer P217124 Enhancer Unique Tile chr7:45897648-45898572 (+) NM_018795 - 248 45898324 27421 Abcc6 Abcc1b|Mrp6 ATP-binding cassette, sub-family C (CFTR/MRP), member 6 MGI:1351634 Mm.63514 7 - ABCC6 368 NM_153057 + 3219 45901791 211548 Nomo1 1 CCAGCCTGGTCTACAAAGTGAGT AAAGTATGCAGCAAGTTTGGGAG 8 3 7 1.1.2.4.7.3 BCBC-5B-0 14133010 P217874 Gnl3l Enhancer P217874 Enhancer Unique Tile chrX:146356892-146357931 (-) NM_198110 - 29 146357960 237107 Gnl3l BC020354 guanine nucleotide binding protein-like 3 (nucleolar)-like MGI:2448557 Mm.45987 X X F3 GNL3L 54552 NM_008001 + 30017 146387948 14163 Fgd1 0 CTGCCGGAAGTGTAGGTAAGAGA TATCACTGGCTTTCTGGGCTAAA 8 3 8 1.1.2.4.8.3 BCBC-5B-0 14133029 P218914 Kcmf1 ProximalPromoter P218914 ProximalPromoter Unique Tile chr6:72808342-72809341 (-) NM_019715 - 16907 72791435 74287 Kcmf1 1700094M07Rik|Debt91|Pmcf potassium channel modulatory factor 1 MGI:1921537 Mm.29194 6 6 C3|6 30.5 cM KCMF1 56888 0 GAGTGCTCTGCGGTTCTAGGATA AGCCATTATACCTTGGGCTGTTT 8 3 9 1.1.2.4.9.3 BCBC-5B-0 14133048 P219754 Olfr985 ProximalPromoter P219754 ProximalPromoter Unique Tile chr9:39878492-39879475 (-) NM_146855 - 38 39878530 258854 Olfr985 MOR171-4 olfactory receptor 985 MGI:3030819 Mm.377722 9 - OR8D4 338662 NM_146608 - 26433 39852059 258601 Olfr984 0 AAGAACAGCTTCTTGAAGAGCCA GAGAAACTCAGTCACCGTGGAGT 8 3 10 1.1.2.4.10.3 BCBC-5B-0 14133067 P220504 Ikbkb ProximalPromoter P220504 ProximalPromoter Unique Tile chr8:24172243-24173163 (-) NM_010546 - 135 24172108 16150 Ikbkb AI132552|IKK-2|IKK-beta|IKK2|IKK[b] inhibitor of kappaB kinase beta MGI:1338071 Mm.277886 8 8 A3-A4 IKBKB 3551 0 CATCATCTCATGTTTTGCTTGCT TTCTTCACCCTGGCACTTTTTAG 8 3 11 1.1.2.4.11.3 BCBC-5B-0 14133086 P221626 Sprr2e ProximalPromoter P221626 ProximalPromoter Unique Tile chr3:92436692-92437604 (+) NM_011471 + 59 92437545 20759 Sprr2e - small proline-rich protein 2E MGI:1330346 Mm.261596 3 3 F1|3 45.2 cM NM_011470 + 12132 92424560 20758 Sprr2d 0 AGCCTTAGAACAGCAGGAAGTGA CAAGAAAAGACACTTGCCAGGTT 8 3 12 1.1.2.4.12.3 BCBC-5B-0 14133105 P222376 Sspo ProximalPromoter P222376 ProximalPromoter Unique Tile chr6:48409126-48410058 (+) NM_173428 + 32244 48377814 243369 Sspo C79529|Scospondin SCO-spondin MGI:2674311 Mm.25039 6 6 B2.3 SSPO 23145 NM_020589 - 33933 48375193 68910 Zfp467 0 CCATGTGAGAATTGGTAAGACCC GAGAACCCTCTCTCACCTTCCTC 8 3 13 1.1.2.4.13.3 BCBC-5B-0 14133124 P223216 Vnn3 Enhancer P223216 Enhancer Unique Tile chr10:23537806-23538807 (+) NM_011979 + 2080 23540887 26464 Vnn3 MGC124285 vanin 3 MGI:1347055 Mm.27334 10 - VNN3 55350 NM_011704 + 45468 23584275 22361 Vnn1 0 AACCAAACACGTTCTGGGTTAGA TCGTGGTGGTATCAGGTAGGTTT 8 3 14 1.1.2.4.14.3 BCBC-5B-0 14133143 P224338 Defb2 ProximalPromoter P224338 ProximalPromoter Unique Tile chr8:23304459-23305515 (+) NM_010030 + 33 23305482 13215 Defb2 MGC129140|MGC129141 defensin beta 2 MGI:1338754 Mm.41981 8 8 A4|8 9.0 cM DEFB4 1673 NM_199067 + 15376 23289083 387334 Defb50 0 TGATTTCCGTCCTTGTATTGCTT GAGAGTCCTCATGGCTGGTAGAA 8 3 15 1.1.2.4.15.3 BCBC-5B-0 14133162 P225088 Olfr832 ProximalPromoter P225088 ProximalPromoter Unique Tile chr9:18694023-18695067 (+) NM_001011824 + 16 18695051 258075 Olfr832 MOR153-1 olfactory receptor 832 MGI:3030666 Mm.377343 9 9 A2 NM_001011823 + 43324 18738391 258074 Olfr834 0 TGAGAGTGCATGTGTGTCTGAAA CGTTTCCTCTCTTCATGATGTTG 8 3 16 1.1.2.4.16.3 BCBC-5B-0 14133181 P225932 Pdx1 P225932 Pdx1 Unique Tile chr19:15254862-15255697 (+) 0 CAACACTGGTATTTTCCAAGAAG CTCTGCAGGTCTATGCTTGGTTT 8 3 17 1.1.2.4.17.3 BCBC-5B-0 14133200 P226388 Sh3gl1 Pdx1 P226388 Pdx1 Unique Tile chr17:55629486-55630392 (+) NM_013664 - 383 55629869 20405 Sh3gl1 C77078|EEN|SH3P8|Sh3d2b SH3-domain GRB2-like 1 MGI:700010 Mm.1773 17 17 C|17 35.0 cM SH3GL1 6455 NM_013733 + 3316 55633708 27221 Chaf1a 0 CGAACTTACGTTGTAAAGCCTGG CTATGAGCAAGCAGCCTGATGT 8 3 18 1.1.2.4.18.3 BCBC-5B-0 14133219 P226562 Clasp2 Pdx1 P226562 Pdx1 Unique Tile chr9:113641222-113642132 (+) NM_029633 + 19151 113661283 76499 Clasp2 1500004F14Rik|CLASP2beta|mKIAA0627 CLIP associating protein 2 MGI:1923749 Mm.222272 9 9 F2 CLASP2 23122 0 AGTCTGCAGCATAACTCCCAATC GCTCTCTCAAACCAAAAGGTCAA 8 3 19 1.1.2.4.19.3 BCBC-5B-0 14133238 P003160 Blank P003160 Buffer Control Negative Blank 8 3 20 1.1.2.4.20.3 BCBC-5B-0 14132878 P211394 PufferfishHuman P211394 PufferfishHuman Unique Tile chr8:28379751-28380816 (-) 0 AGCTTTCTGTGAATAGGCTGTGG TGGGGGAAAAGAGAAGAACTAGG 8 4 1 1.1.2.4.1.4 BCBC-5B-0 14132897 P212516 miRNA P212516 miRNA Unique Tile chr4:154899134-154900099 (+) mmu-mir-200a 0 CTTTAGAGCCTTTGCTGCACTTC TAATGGGACTGGACCTGTTGTCT 8 4 2 1.1.2.4.2.4 BCBC-5B-0 14132916 P213266 Entpd2 Enhancer P213266 Enhancer Unique Tile chr2:25220501-25221476 (+) NM_009849 + 2535 25217966 12496 Entpd2 Cd39l1|NTPDase-2 ectonucleoside triphosphate diphosphohydrolase 2 MGI:1096863 Mm.298775 2 2 A3 ENTPD2 954 NM_008721 + 3615 25225091 18146 Npdc1 0 TGCTTGCTCACAGTCTTAATCCA GATATTGAAGAGCCCAGAGACGA 8 4 3 1.1.2.4.3.4 BCBC-5B-0 14132935 P214388 Ar Enhancer P214388 Enhancer Unique Tile chrX:94354739-94355724 (+) NM_013476 + 2271 94352468 11835 Ar AW320017|Tfm androgen receptor MGI:88064 Mm.39005; Mm.392845; Mm.394224; Mm.39005; Mm.392845; Mm.394224; Mm.39005; Mm.392845; Mm.394224; Mm.39005; Mm.392845; Mm.394224; Mm.39005; Mm.392845; Mm.394224; Mm.39005; Mm.392845; Mm.394224; Mm.39005; Mm.392845; Mm.394224; Mm.39005; Mm.392845; Mm.394224; Mm.39005; Mm.392845; Mm.394224; Mm.39005; Mm.392845; Mm.394224; Mm.39005; Mm.392845; Mm.394224 X X C3|X 36.0 cM AR 367 0 TTCAACAAGGCACATTTAGAGCA ATCCCACAGTAAAACCCATCTCA 8 4 4 1.1.2.4.4.4 BCBC-5B-0 14132954 P215228 Mrpl38 Enhancer P215228 Enhancer Unique Tile chr11:115952829-115953815 (-) NM_024177 - 1030 115954845 60441 Mrpl38 1110036N21Rik|4733401F03Rik|MGC41062|MGC8310|MRP-L3|R75240|Rpml3 mitochondrial ribosomal protein L38 MGI:1926269 Mm.29974 11 11 E2 MRPL38 64978 NM_178802 - 5611 115947218 338364 Trim65 1 GACTTAAGTGTGCAGCCTGGTCT CACTTGACCCACTAAGCTGACCT 8 4 5 1.1.2.4.5.4 BCBC-5B-0 14132973 P215978 Pdgfd Enhancer P215978 Enhancer Unique Tile chr9:6168978-6169943 (+) NM_027924 + 318 6168660 71785 Pdgfd 1110003I09Rik platelet-derived growth factor, D polypeptide MGI:1919035 Mm.390122 9 9 A1 PDGFD 80310 0 GTTCTTTGGGTCATTCACCAGAC CTCAATGATTTCCTTGATGGGAG 8 4 6 1.1.2.4.6.4 BCBC-5B-0 14132992 P217100 Bmi1 Enhancer P217100 Enhancer Unique Tile chr2:18593912-18594812 (+) NM_007552 + 41 18594771 12151 Bmi1 AW546694|Bmi-1|Pcgf4 B lymphoma Mo-MLV insertion region 1 MGI:88174 Mm.289584 2 2 A3|2 9.0 cM BMI1 648 NM_147778 + 3697 18590215 12238 Commd3 1 TTGAGCGTCTTCAAGCCCTATTA CCATTGTCTCTCCCGATCTCTG 8 4 7 1.1.2.4.7.4 BCBC-5B-0 14133011 P217850 3000004C01Rik Enhancer P217850 Enhancer Unique Tile chr11:102737259-102738329 (-) NM_197959 - 2853 102741182 70218 3000004C01Rik - RIKEN cDNA 3000004C01 gene MGI:1917468 Mm.32084 11 11 E1 LOC146909 146909 NM_010277 - 24038 102713221 14580 Gfap 0 CCTTCCCCTCTGTCTTAGCTCTC AACTTGCCCAAGGTTCCAATACT 8 4 8 1.1.2.4.8.4 BCBC-5B-0 14133030 P218608 Gypa Enhancer P218608 Enhancer Unique Tile chr8:83392376-83393455 (+) NM_010369 + 3088 83389288 14934 Gypa AI853584|CD235a|GPA glycophorin A MGI:95880 Mm.13123 8 8 C2|8 36.0 cM 0 AACCATCGTAACTGGAGGTGAGA TATCCACACACATTACCAGGCAC 8 4 9 1.1.2.4.9.4 BCBC-5B-0 14133049 P219730 Dbt Enhancer P219730 Enhancer Unique Tile chr3:116502943-116503948 (-) NM_010022 + 1178 116505126 13171 Dbt D3Wsu60e dihydrolipoamide branched chain transacylase E2 MGI:105386 Mm.3636 3 3 G1|3 51.2 cM DBT 1629 NM_025517 - 2793 116500150 66368 Rtcd1 0 AAACTCTCAGCACTGGAAAGTCG CAGTGGTTATAGACGGCTTGCTT 8 4 10 1.1.2.4.10.4 BCBC-5B-0 14133068 P220480 Zfp92 Enhancer P220480 Enhancer Unique Tile chrX:69664040-69664945 (+) NM_009566 + 218 69663822 22754 Zfp92 - zinc finger protein 92 MGI:108094 Mm.5060 X X A7.3|X 29.24 cM ZFP92 29977 NM_011907 - 23083 69688028 24102 Trex2 0 ATAGCGTACAGGTAGGCAAGCAG TGCTCAGTCACTAACTCCAACCA 8 4 11 1.1.2.4.11.4 BCBC-5B-0 14133087 P221602 Olfr1391 ProximalPromoter P221602 ProximalPromoter Unique Tile chr11:49169980-49170904 (+) NM_146468 + 69 49170835 258460 Olfr1391 MOR256-27 olfactory receptor 1391 MGI:3031225 Mm.377514 11 - NM_206822 + 9010 49160970 18307 Olfr10 0 TCAGTACCAAAAAGGCAGTGACA TAATTGAGGCCAGTCTGAAAAGC 8 4 12 1.1.2.4.12.4 BCBC-5B-0 14133106 P222442 2510039O18Rik Enhancer P222442 Enhancer Unique Tile chr4:146784476-146785569 (-) NM_029841 + 218 146784694 77034 2510039O18Rik - RIKEN cDNA 2510039O18 gene MGI:1924284 Mm.183076; Mm.392431; Mm.183076; Mm.392431; Mm.183076; Mm.392431; Mm.183076; Mm.392431; Mm.183076; Mm.392431; Mm.183076; Mm.392431; Mm.183076; Mm.392431; Mm.183076; Mm.392431; Mm.183076; Mm.392431; Mm.183076; Mm.392431; Mm.183076; Mm.392431; Mm.183076; Mm.392431; Mm.183076; Mm.392431; Mm.183076; Mm.392431; Mm.183076; Mm.392431; Mm.183076; Mm.392431; Mm.183076; Mm.392431; Mm.183076; Mm.392431; Mm.183076; Mm.392431 4 4 E1 KIAA2013 90231 NM_011122 - 3972 146780504 18822 Plod1 1 CCGAGTAGAGGAGAAACTGGTGA TGGCTTGCTCTCTGACTTTCTTT 8 4 13 1.1.2.4.13.4 BCBC-5B-0 14133125 P223192 Olfr120 ProximalPromoter P223192 ProximalPromoter Unique Tile chr17:37333005-37334093 (+) NM_146631 + 42 37334051 258624 Olfr120 MOR263-3 olfactory receptor 120 MGI:2177503 Mm.272073 17 17 B1 NM_146629 + 22825 37356918 258622 Olfr121 0 AGGAAGTTTTTATCAAGCCAGGG GCAGTTGACACTCATCTCCTGAA 8 4 14 1.1.2.4.14.4 BCBC-5B-0 14133144 P224314 Lect1 Enhancer P224314 Enhancer Unique Tile chr14:78392958-78394049 (-) NM_010701 - 2175 78396224 16840 Lect1 ChM-I leukocyte cell derived chemotaxin 1 MGI:1341171 Mm.46561 14 14 D3 LECT1 11061 0 GGGCTCCCACTTCTCATATCTTT CTTCTCAGGAGAGGATCCCTAGC 8 4 15 1.1.2.4.15.4 BCBC-5B-0 14133163 P225064 Dppa2 ProximalPromoter P225064 ProximalPromoter Unique Tile chr16:48228863-48229928 (+) NM_028615 + 33 48229895 73703 Dppa2 2410088E07Rik developmental pluripotency associated 2 Mm.27857 16 16 B5 NM_028610;NM_001018002; + 25446 48203417 73693 Dppa4 2 GAGTTCCAAGACAGCCAGGACTA AAGTAAATCAAAAGCCAGCCACA 8 4 16 1.1.2.4.16.4 BCBC-5B-0 14133182 P001529 Blank P001529 Buffer Control Negative Blank 8 4 17 1.1.2.4.17.4 BCBC-5B-0 14133201 P226364 Pdx1 P226364 Pdx1 Unique Tile chr4:27299027-27299932 (+) 0 TTCTCTTTGGCTGCTTATTTTGC TGTTCCTGCCATCATAGTTCAGA 8 4 18 1.1.2.4.18.4 BCBC-5B-0 14133220 P226538 Pdx1 P226538 Pdx1 Unique Tile chr13:109866908-109867818 (+) 0 TTAACAGGGCTTTGTTTCTGTGG TATTCAAATTGTGGTCCACTCCC 8 4 19 1.1.2.4.19.4 BCBC-5B-0 14133239 P003160 Blank P003160 Buffer Control Negative Blank 8 4 20 1.1.2.4.20.4 BCBC-5B-0 14132879 P211370 PufferfishHuman P211370 PufferfishHuman Unique Tile chr13:39918462-39919515 (+) 0 ACTAGAGGCTGCTGGTTACATGG TGAGCACCATTTATCTTCAGCAA 8 5 1 1.1.2.4.1.5 BCBC-5B-0 14132898 P212492 miRNA P212492 miRNA End Repeat Tile chr9:21246669-21247605 (-) mmu-mir-199a-1 1 CACACACACACACACACACACAC CCAGCAGGGGACTTTTCTTTATT 8 5 2 1.1.2.4.2.5 BCBC-5B-0 14132917 P213242 Nbl1 Enhancer P213242 Enhancer Unique Tile chr4:138363705-138364659 (-) NM_008675 - 265 138364924 17965 Nbl1 D4H1S1733E|DAN|Dana|MGC123430|NO3 neuroblastoma, suppression of tumorigenicity 1 MGI:104591 Mm.9404 4 4 D3|4 70.0 cM NBL1 4681 NM_021358 - 16840 138346865 15565 Htr6 1 GGCTCCGTTTCTTGTAGGAGTTT GCCTTGTCTCTTCTTTGGCTCTA 8 5 3 1.1.2.4.3.5 BCBC-5B-0 14132936 P214082 Psmb7 Enhancer P214082 Enhancer Unique Tile chr2:38468833-38469894 (-) NM_011187 - 2917 38465916 19177 Psmb7 MC14 proteasome (prosome, macropain) subunit, beta type 7 Mm.389251 2 2 B|2 27.5 cM 0 CAACAAACAAACATCAACCAGGA GGTGATGTCAGGCAGATCTCTTT 8 5 4 1.1.2.4.4.5 BCBC-5B-0 14132955 P215204 Etv5 Enhancer P215204 Enhancer Unique Tile chr16:22353859-22354767 (-) NM_023794 - 59 22354826 104156 Etv5 1110005E01Rik|8430401F14Rik|ERM ets variant gene 5 MGI:1096867 Mm.155708 16 16 B1 ETV5 2119 1 GACTGGTTCTGGGTCCTCAGTT CCCATTCATGAAAACTCCTTCAG 8 5 5 1.1.2.4.5.5 BCBC-5B-0 14132974 P215954 Ifih1 Enhancer P215954 Enhancer Unique Tile chr2:62444232-62445141 (-) NM_027835 - 1851 62446992 71586 Ifih1 9130009C22Rik|Helicard|Hlcd|MDA-5|MDA5|MGC90959 interferon induced with helicase C domain 1 MGI:1918836 Mm.136224 2 2 C3 IFIH1 64135 NM_145523 + 20024 62465165 227960 Gca 0 TCTTCTGTTTCATTCATTGGCTG TATAGTTGTGCCATGCCACTTTG 8 5 6 1.1.2.4.6.5 BCBC-5B-0 14132993 P217076 Tspan33 Enhancer P217076 Enhancer Unique Tile chr6:29644668-29645931 (+) NM_146173 + 403 29644265 232670 Tspan33 1300010A20Rik|AI035228|MGC30714 tetraspanin 33 MGI:1919012 Mm.225289 6 6 A3.3 TSPAN33 340348 NM_176996 + 39581 29685512 319757 Smo 0 CGAGTGGTGCTTCGTAGTTTTCT ATAAAACCGTGGAAGTTCAGCAA 8 5 7 1.1.2.4.7.5 BCBC-5B-0 14133012 P217916 Cnga4 Enhancer P217916 Enhancer Unique Tile chr7:105277783-105278746 (-) NM_001033317 + 304 105278442 233649 Cnga4 MGC130316 cyclic nucleotide gated channel alpha 4 MGI:2664099 Mm.99556 7 7 E3 CNGA4 1262 NM_199009 - 3951 105273832 74349 4632419K20Rik 0 ATAATCCCCAGATGGGTCTAGGA TGATCTCCATAGGAATGACAGCA 8 5 8 1.1.2.4.8.5 BCBC-5B-0 14133031 P218584 Pxmp3 Enhancer P218584 Enhancer Unique Tile chr3:5554121-5555117 (-) NM_008994 - 4084 5559201 19302 Pxmp3 35kDa|D3Ertd138e|PEX2|PMP35 peroxisomal membrane protein 3 MGI:107486 Mm.132336 3 3 A1|3 1.0 cM PXMP3 5828 0 CAGAGAGCCAGAGGTCATGGTAT AGACCAAATGACCCAGCACTAAA 8 5 9 1.1.2.4.9.5 BCBC-5B-0 14133050 P219706 Ceacam14 Enhancer P219706 Enhancer Unique Tile chr7:16968176-16969096 (+) NM_025957 + 2107 16971203 67084 Ceacam14 1600021E03Rik|1600025E09Rik|AV033953 CEA-related cell adhesion molecule 14 MGI:1914334 Mm.33709 7 7 A2 0 ATCCACCCTGCATAGTTACCTGA AGACCTAGGCTGGAAAGTTTTGG 8 5 10 1.1.2.4.10.5 BCBC-5B-0 14133069 P220456 Yipf6 ProximalPromoter P220456 ProximalPromoter Unique Tile chrX:95140023-95141034 (+) NM_207633 + 170 95140864 77929 Yipf6 A430107J06Rik|MGC59484 Yip1 domain family, member 6 MGI:1925179 Mm.212290 X X C2 YIPF6 286451 NM_052976 - 46319 95093704 94190 Ophn1 0 AGGCTGTGATCAGACTAGGTTCG CCTTCTGCCACTGTCCTCTTAAC 8 5 11 1.1.2.4.11.5 BCBC-5B-0 14133088 P221296 Rps27 ProximalPromoter P221296 ProximalPromoter Unique Tile chr3:90299526-90300448 (-) NM_027015 - 33 90299559 57294 Rps27 3200001M24Rik ribosomal protein S27 MGI:1888676 Mm.270283; Mm.31586; Mm.270283; Mm.31586; Mm.270283; Mm.31586; Mm.270283; Mm.31586; Mm.270283; Mm.31586; Mm.270283; Mm.31586; Mm.270283; Mm.31586; Mm.270283; Mm.31586; Mm.270283; Mm.31586; Mm.270283; Mm.31586; Mm.270283; Mm.31586 3 3 F1 RPS27 6232 NM_026677 + 6269 90306717 68328 Rab13 0 ACCTCGTCTGGCCTTTAATTAGC AAGGAACTCACAGGCATGTTCTC 8 5 12 1.1.2.4.12.5 BCBC-5B-0 14133107 P222418 Gprc6a ProximalPromoter P222418 ProximalPromoter Unique Tile chr10:51319951-51320940 (-) NM_153071 - 78 51319873 210198 Gprc6a MGC124360 G protein-coupled receptor, family C, group 6, member A MGI:2429498 Mm.221031 10 10 B3 GPRC6A 222545 0 CAGCGTTTGGAGGATAAGTATGG GGACAATGTCAAGAGCCAGAAGT 8 5 13 1.1.2.4.13.5 BCBC-5B-0 14133126 P223168 Olfr91 ProximalPromoter P223168 ProximalPromoter Unique Tile chr17:36701972-36702973 (-) NM_182714 - 47 36701925 258470 Olfr91 MOR256-20|bM573K1.3 olfactory receptor 91 MGI:2177474 Mm.377519 17 17 B1 OR2H1 26716 NM_146477 - 7756 36694216 258469 Olfr90 0 TGTGGAAGTCAGTGGTGTCAGAT ATTCAATGTGTCCTGACGTTGTG 8 5 14 1.1.2.4.14.5 BCBC-5B-0 14133145 P224290 Nap1l5 Enhancer P224290 Enhancer Unique Tile chr6:58832642-58833579 (-) NM_021432 - 3064 58836643 58243 Nap1l5 1110020M21Rik nucleosome assembly protein 1-like 5 MGI:1923555 Mm.389747 6 6 C1 NAP1L5 266812 0 TTGGAACACATACAGCCAAAAGA TTGATCTGTTCTAATGCTGTGCT 8 5 15 1.1.2.4.15.5 BCBC-5B-0 14133164 P225130 Olfr1206 ProximalPromoter P225130 ProximalPromoter Unique Tile chr2:88664425-88665423 (+) NM_001001810 + 22 88665445 258896 Olfr1206 MOR230-3|Olfr1206-ps1 olfactory receptor 1206 MGI:3031040 Mm.377739 2 - OR4C11 219429 NM_146463 + 11635 88652790 258455 Olfr1204 2 CCAATAGTGGTTGAAAGACAGCA TCACATGCCAGAAGAAAATCTGA 8 5 16 1.1.2.4.16.5 BCBC-5B-0 14133183 P001505 Blank P001505 Buffer Control Negative Blank 8 5 17 1.1.2.4.17.5 BCBC-5B-0 14133202 P226340 6330505F04Rik Pdx1 P226340 Pdx1 Unique Tile chrX:52801197-52802101 (+) NM_172779 + 433 52801668 236790 6330505F04Rik 4930535D10Rik|D130066O12 RIKEN cDNA 6330505F04 gene MGI:2442593 Mm.427640; Mm.72753; Mm.427640; Mm.72753; Mm.427640; Mm.72753; Mm.427640; Mm.72753; Mm.427640; Mm.72753; Mm.427640; Mm.72753; Mm.427640; Mm.72753; Mm.427640; Mm.72753; Mm.427640; Mm.72753; Mm.427640; Mm.72753; Mm.427640; Mm.72753; Mm.427640; Mm.72753 X X A5 0 TAAGGGAATTTGAGCAAGTCTGG CCTTCAAGAATAACTCCACAGCG 8 5 18 1.1.2.4.18.5 BCBC-5B-0 14133221 P226514 Arhgap29 Pdx1 P226514 Pdx1 Unique Tile chr3:121914833-121915742 (+) NM_172525 + 29606 121945348 214137 Arhgap29 6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1 Rho GTPase activating protein 29 MGI:2443818 Mm.229287 3 3 G1 ARHGAP29 9411 0 CAAAAAGCACATTTGTCTGAAC CAGTCTGCGTGACATGAATCTAT 8 5 19 1.1.2.4.19.5 BCBC-5B-0 14133240 P003064 Blank P003064 Buffer Control Negative Blank 8 5 20 1.1.2.4.20.5 BCBC-5B-0 14132880 P211346 PufferfishHuman P211346 PufferfishHuman Unique Tile chr15:40753915-40755000 (-) 0 GCCATCCCTGTAAACAGAACTTG CCCTGGTTTCCTTGCTTTAGAAT 8 6 1 1.1.2.4.1.6 BCBC-5B-0 14132899 P212468 miRNA P212468 miRNA Unique Tile chr1:187017969-187018956 (-) mmu-mir-194-1 0 TTTCTGTCTTCATGGGGTTAGGA CATATATGAGAAGCCTGAAGCGG 8 6 2 1.1.2.4.2.6 BCBC-5B-0 14132918 P213308 Plcb3 Enhancer P213308 Enhancer Unique Tile chr19:7035390-7036349 (-) NM_008874 - 447 7036796 18797 Plcb3 KIAA4098|mKIAA4098 phospholipase C, beta 3 MGI:104778 Mm.273204 19 19 B|19 2.5 cM PLCB3 5331 NM_008889 + 5742 7042091 18938 Ppp1r14b 1 TGGAGACTTTGAACCCCTGTAAA GTGCTAGAAAGGGGGAAACTTGT 8 6 3 1.1.2.4.3.6 BCBC-5B-0 14132937 P214058 Sept4 Enhancer P214058 Enhancer Unique Tile chr11:87397508-87398474 (+) NM_011129 + 183 87397325 18952 Sept4 Bh5|Pnutl2 septin 4 MGI:1270156 Mm.2214 11 11 C SEPT4 5414 NM_133215 + 9937 87408411 170749 Mtmr4 0 AAAGCTGGAGGAGGTGGATAGAC TTACCCTTAGCTCTCCCATAGCC 8 6 4 1.1.2.4.4.6 BCBC-5B-0 14132956 P215180 Ick Enhancer P215180 Enhancer Unique Tile chr9:77898245-77899334 (-) NM_019987 + 242 77899092 56542 Ick 2210420N10Rik|AI848300 intestinal cell kinase MGI:1934157 Mm.288719 9 9 E1 ICK 22858 NM_023605 - 3934 77894311 71538 Fbxo9 1 GATAAACACACCCATCAAAAGCC ATTCACTGCATCTGCCTCCTAAG 8 6 5 1.1.2.4.5.6 BCBC-5B-0 14132975 P215930 5730469M10Rik Enhancer P215930 Enhancer Unique Tile chr14:39918472-39919373 (-) NM_027464 - 3106 39922479 70564 5730469M10Rik AU040822 RIKEN cDNA 5730469M10 gene MGI:1917814 Mm.27227 14 14 B C10orf58 84293 NM_145928 - 42947 39875525 52588 Tspan14 2 AAGTCATGTGCCTCTTCCTCTTG GATGGATAGGTTCAGAGAAGCCA 8 6 6 1.1.2.4.6.6 BCBC-5B-0 14132994 P216770 Acad8 Enhancer P216770 Enhancer Unique Tile chr9:26744778-26745711 (+) NM_025862 - 3249 26748960 66948 Acad8 2310016C19Rik|AI786953 acyl-Coenzyme A dehydrogenase family, member 8 MGI:1914198 Mm.289244 9 9 A4 ACAD8 27034 NM_144543 + 3456 26749167 77862 Thyn1 0 CAGGTGGCCTTAAACTTGAGGTA CTACTCCTGAGCCAGAGCTCAAC 8 6 7 1.1.2.4.7.6 BCBC-5B-0 14133013 P217892 Paqr9 Enhancer P217892 Enhancer Unique Tile chr9:95372700-95373619 (+) NM_198414 + 3532 95369168 75552 Paqr9 1700020G04Rik progestin and adipoQ receptor family member IX MGI:1922802 Mm.151485 9 9 E3.3 PAQR9 344838 0 GTCTTTAAGCAGAGGCCACTTGA CGTACTTTCTCCCTGGGCTATTT 8 6 8 1.1.2.4.8.6 BCBC-5B-0 14133032 P218560 Mia1 ProximalPromoter P218560 ProximalPromoter Unique Tile chr7:26889884-26890899 (-) NM_019394 - 17 26889867 12587 Mia1 CD-RAP|Cdrap|MIA melanoma inhibitory activity 1 MGI:109615 Mm.347405 7 7 A3|7 1.9 cM MIA 8190 NM_029391 - 2241 26887643 19342 Rab4b 0 TCAATTTCTTTGTGAACTGGGCT ACCTGTGTTCTCGATCCTGTCTC 8 6 9 1.1.2.4.9.6 BCBC-5B-0 14133051 P219682 1110033F04Rik Enhancer P219682 Enhancer Unique Tile chr11:99454553-99455476 (-) NM_026807 - 3379 99451174 68673 1110033F04Rik AI604442 RIKEN cDNA 1110033F04 gene Mm.351893; Mm.394141; Mm.351893; Mm.394141; Mm.351893; Mm.394141 11 11 D NM_029613 - 4678 99460154 76444 Krtap4-7 0 TCCTTTCATATCTTCCCCTCACA TCATACAGGGGGTATATGTTGGG 8 6 10 1.1.2.4.10.6 BCBC-5B-0 14133070 P220522 Snupn1 ProximalPromoter P220522 ProximalPromoter Unique Tile chr9:56747962-56748893 (+) NM_178374 + 162 56749055 66069 Snupn1 0610031A09Rik|Rnut1 snurportin 1 MGI:1913319 Mm.220984; Mm.414014; Mm.220984; Mm.414014; Mm.220984; Mm.414014; Mm.220984; Mm.414014; Mm.220984; Mm.414014; Mm.220984; Mm.414014; Mm.220984; Mm.414014; Mm.220984; Mm.414014; Mm.220984; Mm.414014; Mm.220984; Mm.414014 9 9 B SNUPN 10073 NM_133976 + 12326 56735636 102462 Imp3 0 TTAGCGCAGGCTATACAAACACA GCTTCCAGATTTGGTTTAGGCTT 8 6 11 1.1.2.4.11.6 BCBC-5B-0 14133089 P221272 Fbxl3 ProximalPromoter P221272 ProximalPromoter Unique Tile chr14:101986010-101986909 (-) NM_015822 - 2 101986008 50789 Fbxl3 AU041772|AW212966|FBK|Fbl3a|Fbxl3a F-box and leucine-rich repeat protein 3 MGI:1354702 Mm.214746 14 14 E2.2 FBXL3 26224 0 CTGAGGTTGGTGGATCTCAGAGT GCCCAGTTAGGGAATCCAAAAT 8 6 12 1.1.2.4.12.6 BCBC-5B-0 14133108 P222394 Ptpn20 Enhancer P222394 Enhancer Unique Tile chr14:32427143-32428053 (+) NM_008978 + 4144 32432197 19256 Ptpn20 typ protein tyrosine phosphatase, non-receptor type 20 MGI:1196295 Mm.8019 14 14 B PTPN20B 26095 0 ATGGTTGTGAGCCACCAAGTAGT AAAAGCTTCCTTCCTCATTGTCC 8 6 13 1.1.2.4.13.6 BCBC-5B-0 14133127 P223144 Inhbc ProximalPromoter P223144 ProximalPromoter Unique Tile chr10:126773561-126774495 (-) NM_010565 - 181 126773380 16325 Inhbc - inhibin beta-C MGI:105932 Mm.2594 10 10 D3|10 69.0 cM INHBC 3626 NM_008382 - 18840 126754721 16326 Inhbe 0 TCTGACGGGACACACTAAGAACA GTGAAAGTACAGAGGGGGTTGTG 8 6 14 1.1.2.4.14.6 BCBC-5B-0 14133146 P223984 Fbp2 Enhancer P223984 Enhancer End Repeat Tile chr13:62870547-62871547 (-) NM_007994 - 2559 62867988 14120 Fbp2 Fbp-1|Fbp1 fructose bisphosphatase 2 MGI:95491 Mm.391871 13 13 B3 FBP2 8789 NM_019395 - 26222 62897769 14121 Fbp1 0 GTGTGTGTGTGTGTGTGTGTGTG CTTTCTGCAAATGCCAAAGTTCT 8 6 15 1.1.2.4.15.6 BCBC-5B-0 14133165 P225106 Olfr1453 ProximalPromoter P225106 ProximalPromoter Duplication Tile chr19:13095310-13096372 (-) NM_146700 - 36 13095346 258695 Olfr1453 MOR202-6 olfactory receptor 1453 MGI:3031287 Mm.223130 19 - NM_146705 + 29304 13066006 258700 Olfr1451 0 CCAACTGATTCTGCAGTTGAACA CCAGGATGAAGCATCTCACTTCT 8 6 16 1.1.2.4.16.6 BCBC-5B-0 14133184 P001481 Blank P001481 Buffer Control Negative Blank 8 6 17 1.1.2.4.17.6 BCBC-5B-0 14133203 P226316 Otp Pdx1 P226316 Pdx1 Unique Tile chr13:95999198-96000102 (+) NM_011021 + 22873 95976325 18420 Otp - orthopedia homolog (Drosophila) MGI:99835 Mm.42051 13 13 D1|13 52.0 cM OTP 23440 0 TGAGTTGAGGACATTAGGCTTCC AACCTCTCTCAAGGTCGGATGTA 8 6 18 1.1.2.4.18.6 BCBC-5B-0 14133222 P226580 Pdx1 P226580 Pdx1 Unique Tile chr3:52095006-52095917 (+) 0 GCCTGTCATTTCCATTTTGTTCT ATGAAGCCTTGTTCTTGGGAGTA 8 6 19 1.1.2.4.19.6 BCBC-5B-0 14133241 P003064 Blank P003064 Buffer Control Negative Blank 8 6 20 1.1.2.4.20.6 BCBC-5B-0 14132881 P211322 PufferfishHuman P211322 PufferfishHuman Unique Tile chr6:98417366-98418278 (+) 2 ACAATCTCATTCCAGGAGAGCTG AGAAATATTTTGGGGGTAGGGGT 8 7 1 1.1.2.4.1.7 BCBC-5B-0 14132900 P212162 miRNA P212162 miRNA Unique Tile chr13:48549752-48550797 (-) mmu-let-7d 0 TACAGCAGTCCTCTTGTCCCAAC CAGCAAGTCTACTCCTCAGGGAA 8 7 2 1.1.2.4.2.7 BCBC-5B-0 14132919 P213284 Pcx Enhancer P213284 Enhancer End Repeat Tile chr19:4595808-4596736 (+) NM_008797 + 1451 4594357 18563 Pcx Pc pyruvate carboxylase MGI:97520 Mm.1845 19 19 A|19 0.0 cM PC 5091 NM_153388 - 18096 4614832 225875 Lrfn4 1 ACACACACACACACACACACACA CCACCACTAATGGTTAAAGTGGC 8 7 3 1.1.2.4.3.7 BCBC-5B-0 14132938 P214034 Pap Enhancer P214034 Enhancer Unique Tile chr6:78301419-78302419 (+) NM_011036 + 715 78300704 18489 Pap HIP|INGAP|PAP1|REG-III|Reg3b pancreatitis-associated protein MGI:97478 Mm.2553 6 6 C REG3A 5068 NM_013893 - 5950 78308369 30053 Reg3d 0 ATGCAGAAGTAAGTGCTGGGAAG AGCACGGTCTAAGGCAGTAGATG 8 7 4 1.1.2.4.4.7 BCBC-5B-0 14132957 P215156 Ociad1 Enhancer P215156 Enhancer Unique Tile chr5:73566989-73568013 (+) NM_023429 + 3948 73571961 68095 Ociad1 6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|OCIA|TPA018 OCIA domain containing 1 MGI:1915345 Mm.247039 5 5 C3.2 OCIAD1 54940 NM_026950 - 49683 73617696 433904 Ociad2 0 ACTCCACCTCGAAAATCAAAACA TATTTCAACGTCAGTGTGTTGGG 8 7 5 1.1.2.4.5.7 BCBC-5B-0 14132976 P215996 2610204L23Rik Enhancer P215996 Enhancer Unique Tile chr11:106028461-106029429 (+) NM_026009 - 2964 106032393 67163 2610204L23Rik asp4 RIKEN cDNA 2610204L23 gene Mm.22109 11 11 E1 NM_028074 + 3586 106033015 72047 Ddx42 0 TAGCAAACCTGAAGGATGACACA AGCCTTCTATGCTTTCTGTGTGG 8 7 6 1.1.2.4.6.7 BCBC-5B-0 14132995 P216746 Enhancer P216746 Enhancer No Hits Tile 1 ttcctaagtttccttggagtccc ctgctgtctgcttcgattaaaca 8 7 7 1.1.2.4.7.7 BCBC-5B-0 14133014 P217868 Tbx3 Enhancer P217868 Enhancer Unique Tile chr5:119928215-119929217 (+) NM_198052;NM_011535; + 2068 119931285 21386 Tbx3 D5Ertd189e T-box 3 Mm.219139 5 5 F|5 65.0 cM 0 TAGAGCAGTTCTAGCCAACCACC ACCCTTCAGTTGCCTATGTTTGA 8 7 8 1.1.2.4.8.7 BCBC-5B-0 14133033 P218536 Man2c1 ProximalPromoter P218536 ProximalPromoter Unique Tile chr9:56927917-56929000 (+) NM_028636 + 87 56928913 73744 Man2c1 1110025H24Rik mannosidase, alpha, class 2C, member 1 MGI:1920994 Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552; Mm.30110; Mm.383552 9 9 C MAN2C1 4123 NM_028347 - 16171 56945171 72774 Neil1 0 TCCTCAGCTATGGTTCACCTCTC GTAGATCGGGGACACGAACTTCT 8 7 9 1.1.2.4.9.7 BCBC-5B-0 14133052 P219376 Scamp5 Enhancer P219376 Enhancer Unique Tile chr9:57265018-57265990 (-) NM_020270 - 171 57266161 56807 Scamp5 AI426171|AW558254|Sc5 secretory carrier membrane protein 5 MGI:1928948 Mm.102278 9 9 B SCAMP5 192683 NM_176831 - 26767 57238251 66812 Ppcdc 0 ATTTTCTGCCTTCAAAGAGTCCC TAAACTAGCAACCCCAAGCAAAA 8 7 10 1.1.2.4.10.7 BCBC-5B-0 14133071 P220498 Alox12 Enhancer P220498 Enhancer Unique Tile chr11:70069521-70070420 (-) NM_007440 - 1116 70071536 11684 Alox12 9930022G08Rik|Alox12p|P-12LO arachidonate 12-lipoxygenase MGI:87998 Mm.12286 11 11 B3|11 40.0 cM ALOX12 239 NM_173742 - 13480 70056041 52898 D11Bwg0434e 0 CCAAGTGTTTCCCAGGATAAGTG GGGCTGGGGAAAGTTACAATTAG 8 7 11 1.1.2.4.11.7 BCBC-5B-0 14133090 P221248 Olfr415 ProximalPromoter P221248 ProximalPromoter Unique Tile chr1:176226867-176227839 (+) NM_146714 + 94 176227745 258709 Olfr415 MOR267-7 olfactory receptor 415 MGI:3030249 Mm.377646 1 - NM_207137 + 21274 176205593 258238 Olfr417 0 TGAAAGTTTAATGGGTGGTTTGG GGCAAAGAAAGACCACAAAGAGA 8 7 12 1.1.2.4.12.7 BCBC-5B-0 14133109 P222370 Lipf Enhancer P222370 Enhancer Unique Tile chr19:34027882-34028904 (+) NM_026334 + 638 34027244 67717 Lipf 2310051B21Rik|AV082900 lipase, gastric MGI:1914967 Mm.329816 19 19 C1 LIPF 8513 NM_172837 + 45382 34074286 240633 Lipl2 0 CTTTGGGCCTATTGCTAGACCTT ATGGCTTCATGATCAGACCTTGT 8 7 13 1.1.2.4.13.7 BCBC-5B-0 14133128 P223210 Alcam ProximalPromoter P223210 ProximalPromoter Unique Tile chr16:52372368-52373366 (-) NM_009655 - 366 52372002 11658 Alcam AI853494|BEN|CD166|DM-GRASP|MGC27910|MuSC|SC1 activated leukocyte cell adhesion molecule MGI:1313266 Mm.288282 16 16 B5 ALCAM 214 0 GGTGGTTCAAGCTTTTGAAATTG GTGTGTAAGCTGCCTGTCTCCTC 8 7 14 1.1.2.4.14.7 BCBC-5B-0 14133147 P223960 Cxcr4 Enhancer P223960 Enhancer Unique Tile chr1:130418539-130419508 (-) NM_009911 - 315 130419823 12767 Cxcr4 CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1 chemokine (C-X-C motif) receptor 4 MGI:109563 Mm.1401 1 1 E4|1 67.4 cM CXCR4 7852 0 CCTAAGGTTGCTCTTGTTTCCCT AGTTACTGGAGTCCGAGGTAGGC 8 7 15 1.1.2.4.15.7 BCBC-5B-0 14133166 P225082 Pnma1 ProximalPromoter P225082 ProximalPromoter Unique Tile chr12:85038283-85039203 (-) NM_027438 - 109 85038174 70481 Pnma1 5730402C15Rik|MGC144789|MGC144790 paraneoplastic antigen MA1 MGI:2180564 Mm.272814 12 12 D3 PNMA1 9240 NM_028821 + 34165 85004118 105000 1700010H15Rik 0 TCAGACACTGCCTTTCATGTGTT GTGACAACTGTGTCCATGACGA 8 7 16 1.1.2.4.16.7 BCBC-5B-0 14133185 P225832 LOC433384 ProximalPromoter P225832 ProximalPromoter Unique Tile chr1:183689774-183690646 (-) NM_001007587 - 90 183689864 433384 LOC433384 - hypothetical gene supported by AK040286 Mm.185140 1 1 H5 NM_133815 - 10738 183679036 98386 Lbr 0 AGGAAGGAAAGAAGGAAGGAAGG GTGAATGATGCTGTGGAGACAAG 8 7 17 1.1.2.4.17.7 BCBC-5B-0 14133204 P225914 Pdx1 P225914 Pdx1 Unique Tile chr4:72259818-72260640 (+) 0 AACGATTCCAGAATTACCCCAAT GAAGCAGTTTGATTTTACAGAGG 8 7 18 1.1.2.4.18.7 BCBC-5B-0 14133223 P226556 Muc1 Pdx1 P226556 Pdx1 Unique Tile chr3:89312959-89313869 (+) NM_013605 + 1109 89314978 17829 Muc1 CD227|EMA|Muc-1 mucin 1, transmembrane MGI:97231 Mm.16193 3 3 F1|3 44.8 cM MUC1 4582 NM_013691 + 11800 89301159 21827 Thbs3 0 CGACACTTCAGTCTAAGCTCGGT CGTTGAGATGTATCTGGGAAAGG 8 7 19 1.1.2.4.19.7 BCBC-5B-0 14133242 P003292 Blank P003292 Buffer Control Negative Blank 8 7 20 1.1.2.4.20.7 BCBC-5B-0 14132882 P211388 PufferfishHuman P211388 PufferfishHuman Unique Tile chr5:139853103-139854024 (-) 2 TGAGCATCAAGACATCAGGACTC TTTAAGCTTGCTGTCTCCTGTCC 8 8 1 1.1.2.4.1.8 BCBC-5B-0 14132901 P212138 Mafb ChickenHuman P212138 ChickenHuman Unique Tile chr2:160055839-160056748 (+) NM_010658 - 1461 160058209 16658 Mafb Kreisler|Krml|Krml1|kr v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian) MGI:104555 Mm.330745 2 2 H2|2 91.0 cM MAFB 9935 NM_001033411 - 36904 160018935 329554 Gm826 1 AAATCTTTTCACCCTAAGCCCTG AGGAAGAGCAGAGGAGAGGAGAG 8 8 2 1.1.2.4.2.8 BCBC-5B-0 14132920 P213260 Nos3 Enhancer P213260 Enhancer Unique Tile chr5:23870832-23871860 (+) NM_008713 + 3023 23874883 18127 Nos3 2310065A03Rik|Nos-3|eNOS|ecNOS nitric oxide synthase 3, endothelial cell MGI:97362 Mm.258415 5 5 A3|5 9.0 cM NOS3 4846 NM_013569 - 9163 23861669 16511 Kcnh2 0 AAGGATTTGTGCAAGGAAGTCAG CCTTGAAAGGAACTCCCAGATTT 8 8 3 1.1.2.4.3.8 BCBC-5B-0 14132939 P214010 Nefl Enhancer P214010 Enhancer Unique Tile chr14:67041018-67042009 (+) NM_010910 + 3805 67037213 18039 Nefl AI847934|CMT2E|NF-L|NF68|Nfl neurofilament, light polypeptide MGI:97313 Mm.1956 14 14 D3|14 28.7 cM NEFL 4747 NM_008691 - 36134 67078143 18040 Nef3 0 TTCAGGATCTATGGCAATGTGAA CACCAAACACAAGTAGTGCAAGC 8 8 4 1.1.2.4.4.8 BCBC-5B-0 14132958 P214850 Ivd Enhancer P214850 Enhancer Unique Tile chr2:118549496-118550592 (+) NM_019826 + 2848 118553440 56357 Ivd 1300016K07Rik|6720455E18Rik|AI463340 isovaleryl coenzyme A dehydrogenase MGI:1929242 Mm.392079; Mm.6635; Mm.392079; Mm.6635; Mm.392079; Mm.6635; Mm.392079; Mm.6635; Mm.392079; Mm.6635; Mm.392079; Mm.6635; Mm.392079; Mm.6635; Mm.392079; Mm.6635 2 - IVD 3712 NM_026412 + 43761 118505735 51944 D2Ertd750e 1 GAGAGATCTCCCTGTGGAAGACA AGCTACCAGAGCTGATTGATTGG 8 8 5 1.1.2.4.5.8 BCBC-5B-0 14132977 P215972 1300018J18Rik Enhancer P215972 Enhancer Unique Tile chr15:88912434-88913374 (+) NM_027905 + 3498 88916872 223776 1300018J18Rik Selo RIKEN cDNA 1300018J18 gene MGI:1919007 Mm.358861; Mm.380934; Mm.358861; Mm.380934; Mm.358861; Mm.380934; Mm.358861; Mm.380934; Mm.358861; Mm.380934; Mm.358861; Mm.380934; Mm.358861; Mm.380934 15 15 E3 RP3-402G11.5 83642 NM_026485 + 8074 88904360 67976 Trabd 0 ATGTCGATGACATGGTTCCTCTT ACTCCAGTTCTTCTCAATGCCAG 8 8 6 1.1.2.4.6.8 BCBC-5B-0 14132996 P216722 Gnb5 Enhancer P216722 Enhancer Unique Tile chr9:75097118-75098073 (+) NM_138719;NM_010313; + 185 75097303 14697 Gnb5 GBS|Gbeta5|flr guanine nucleotide binding protein, beta 5 MGI:101848 Mm.17604 9 9 D|9 41.0 cM GNB5 10681 NM_013479 + 35606 75133679 12049 Bcl2l10 0 TGTACCAGCTGTCTAAGGCTTCC ATTCCCAGGGCTGAATACATTTT 8 8 7 1.1.2.4.7.8 BCBC-5B-0 14133015 P217844 Onecut2 Enhancer P217844 Enhancer Unique Tile chr18:64461182-64462110 (+) NM_194268 + 3622 64465732 225631 Onecut2 MGC124203|OC-2|Oc2 one cut domain, family member 2 MGI:1891408 Mm.118978 18 18 D3 ONECUT2 9480 0 AAGGCTCCCTCTCTGCTACAAAC ACCCCAAGTCAATACAATCTGGA 8 8 8 1.1.2.4.8.8 BCBC-5B-0 14133034 P218602 Ap1s3 ProximalPromoter P218602 ProximalPromoter Unique Tile chr1:79550963-79551965 (-) NM_183027 - 24 79550987 252903 Ap1s3 1190009B22|Jr2|[s]3A adaptor-related protein complex AP-1, sigma 3 MGI:1891304 Mm.32409 1 1 C4 AP1S3 130340 0 CTGGAGATTCTTTATTCCGGCTT TAGCCTCAGACCATGGCTACTTC 8 8 9 1.1.2.4.9.8 BCBC-5B-0 14133053 P219352 Cygb ProximalPromoter P219352 ProximalPromoter Unique Tile chr11:116469969-116471004 (-) NM_030206 - 429 116470398 114886 Cygb 3110001K20Rik|HGb|Staap cytoglobin MGI:2149481 Mm.34598 11 11 E2 CYGB 114757 NM_025472 + 16754 116487758 66293 1810032O08Rik 1 AGCCTCTCCATCATACCTGACTG TCCCTACGCTCTATCTCCATGTC 8 8 10 1.1.2.4.10.8 BCBC-5B-0 14133072 P220474 Slc6a1 ProximalPromoter P220474 ProximalPromoter Unique Tile chr6:114247474-114248388 (+) NM_178703 + 10 114248378 232333 Slc6a1 A730043E01|GABATHG|GABATR|Gabt|Gabt1|Gat1|XT-1|Xtrp1 solute carrier family 6 (neurotransmitter transporter, GABA), member 1 MGI:95627 Mm.5260 6 6 E3 SLC6A1 6529 0 TCAGATATTGAATGCCAGACCCT CTGCAACCTCTCAGCTCTCTAGG 8 8 11 1.1.2.4.11.8 BCBC-5B-0 14133091 P221224 Pik3r1 ProximalPromoter P221224 ProximalPromoter Unique Tile chr13:102792541-102793487 (-) NM_001024955;NM_011085; - 46 102792587 18708 Pik3r1 AA414921|C530050K14|PI3K|p50alpha|p55alpha|p85alpha phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha) MGI:97583 Mm.259333 13 13 D1|13 50.0 cM PIK3R1 5295 0 CTGAGTGAGACACTTGGCAGAGA TACATGTGTGCGACAGTTTCCTT 8 8 12 1.1.2.4.12.8 BCBC-5B-0 14133110 P222064 Tas2r120 ProximalPromoter P222064 ProximalPromoter Unique Tile chr6:132621828-132622731 (+) NM_207023 + 82 132622649 387348 Tas2r120 T2R20|Tas2r20|mGR20|mt2r47 taste receptor, type 2, member 120 MGI:2681256 Mm.377910 6 6 G1|6 63.4 cM TAS2R46 259292 NM_207024 - 43969 132666700 387349 Tas2r121 0 CCATAACCCTAGATGTCATCCCA TGGTTATGAAGACATTGGCACAG 8 8 13 1.1.2.4.13.8 BCBC-5B-0 14133129 P223186 1200006F02Rik Enhancer P223186 Enhancer Unique Tile chr5:148204148-148205055 (-) NM_027872 - 96 148205151 71706 1200006F02Rik - RIKEN cDNA 1200006F02 gene MGI:1918956 Mm.153218 5 5 G3 LOC283537 283537 NM_025624 + 33163 148170985 66537 Pomp 0 GCGCTTATTTCTCTTTGCCTTCT TCCAGGATGGGAGGTTTTAATTT 8 8 14 1.1.2.4.14.8 BCBC-5B-0 14133148 P223936 Tm4sf20 Enhancer P223936 Enhancer Unique Tile chr1:82650322-82651352 (-) NM_025453 - 2842 82647480 66261 Tm4sf20 1810018L02Rik|MGC143474 transmembrane 4 L six family member 20 MGI:1913511 Mm.46325 1 1 C5 TM4SF20 79853 NM_029409 + 42070 82608252 75734 5230400G24Rik 1 CCAGGGCTATACAGAGAAACCCT AGAGGATGATCTGATGCCTTCTG 8 8 15 1.1.2.4.15.8 BCBC-5B-0 14133167 P225058 V1rd6 ProximalPromoter P225058 ProximalPromoter Unique Tile chr7:5614205-5615132 (-) NM_030738 - 108 5614097 81013 V1rd6 V3R6 vomeronasal 1 receptor, D6 MGI:3033475 Mm.160378 7 7 A1 0 GCAAAAGTCCCTTGACTGTCTGT TGTTATTGGGCATGTCTGTATGC 8 8 16 1.1.2.4.16.8 BCBC-5B-0 14133186 P001523 Blank P001523 Buffer Control Negative Blank 8 8 17 1.1.2.4.17.8 BCBC-5B-0 14133205 P225890 Pdx1 P225890 Pdx1 No Hits Tile 0 tataggtgcctatggaagccaga gaggatgcacaaaaacaaaacag 8 8 18 1.1.2.4.18.8 BCBC-5B-0 14133224 P226532 Ramp1 Pdx1 P226532 Pdx1 Unique Tile chr1:93012171-93013081 (+) NM_016894 + 1691 93010480 51801 Ramp1 - receptor (calcitonin) activity modifying protein 1 MGI:1858418 Mm.3272 1 1 D|1 56.0 cM RAMP1 10267 NM_001033408 + 36663 92975508 329207 Gm817 0 TAAGAGTTACCGAAATCCCAGCA GCCAGAGCTCTAGTGAGGGTACA 8 8 19 1.1.2.4.19.8 BCBC-5B-0 14133243 P003292 Blank P003292 Buffer Control Negative Blank 8 8 20 1.1.2.4.20.8 BCBC-5B-0 14132883 P211364 PufferfishHuman P211364 PufferfishHuman Unique Tile chr13:40291291-40292213 (+) 0 GATGAGAAGAGCAGCAAGTGTGA CTAAGCCCAGTCTGAACAAATGC 8 9 1 1.1.2.4.1.9 BCBC-5B-0 14132902 P212114 Itgb6 ChickenHuman P212114 ChickenHuman Unique Tile chr2:60474060-60475117 (+) NM_021359 - 440 60474500 16420 Itgb6 2210409C20Rik|4831415H04Rik integrin beta 6 MGI:96615 Mm.98193 2 2 C3|2 34.0 cM ITGB6 3694 0 TACCTAGAACATTCACTGGGGGA CTGTTGTTTCTCTCTCCGGTGTT 8 9 2 1.1.2.4.2.9 BCBC-5B-0 14132921 P213236 Mybl2 Enhancer P213236 Enhancer Unique Tile chr2:162746403-162747305 (+) NM_008652 + 274 162746129 17865 Mybl2 Bmyb myeloblastosis oncogene-like 2 MGI:101785 Mm.313558; Mm.4594; Mm.313558; Mm.4594; Mm.313558; Mm.4594; Mm.313558; Mm.4594; Mm.313558; Mm.4594; Mm.313558; Mm.4594; Mm.313558; Mm.4594; Mm.313558; Mm.4594 2 2 H2|2 93.0 cM MYBL2 4605 NM_026630 - 31919 162779224 68236 2410116G06Rik 0 CACGTTAAGAGGCTATCGGGAC CCACACTTCACAAAAGAGACCCT 8 9 3 1.1.2.4.3.9 BCBC-5B-0 14132940 P214076 Pros1 Enhancer P214076 Enhancer Unique Tile chr16:62796815-62797719 (+) NM_011173 + 226 62796589 19128 Pros1 AW214361 protein S (alpha) MGI:1095733 Mm.127156 16 16 C1.3 PROS1 5627 NM_026577 - 7562 62789253 68146 Arl13b 0 GATTGTCTCCTGGACAGCTTGTT CTTGGCCGTTGAAGTTTTGTAAT 8 9 4 1.1.2.4.4.9 BCBC-5B-0 14132959 P214826 1110004F10Rik Enhancer P214826 Enhancer Unique Tile chr7:115884830-115885729 (+) NM_019772 + 302 115884528 56372 1110004F10Rik Smacp|Smap|sid2057|sid2057p RIKEN cDNA 1110004F10 gene MGI:1929274 Mm.24231 7 7 F3 C11orf58 10944 0 ATACAGAGACCTGCGTAGGAACG ACCAGTCATCCCTCCACTCTTTT 8 9 5 1.1.2.4.5.9 BCBC-5B-0 14132978 P215948 Tbc1d9 Enhancer P215948 Enhancer Unique Tile chr8:86052487-86053508 (+) NM_027758 + 1948 86055456 71310 Tbc1d9 4933431N12Rik|AI847101|AW490653|C76116 TBC1 domain family, member 9 MGI:1918560 Mm.24031 8 8 C3 TBC1D9 23158 0 CCTGCAGGATAGACAGGAGCTAA TGCCCACCTTGTAAAGTAGCATT 8 9 6 1.1.2.4.6.9 BCBC-5B-0 14132997 P216698 Tomm70a Enhancer P216698 Enhancer Unique Tile chr16:57043728-57044667 (+) NM_138599 + 656 57043072 28185 Tomm70a 2610044B22Rik|28185|D16Ium22|D16Ium22e|D16Wsu109e|mKIAA0719 translocase of outer mitochondrial membrane 70 homolog A (yeast) MGI:106295 Mm.213292 16 16 C1.1|16 36.9 cM TOMM70A 9868 NM_023175 - 44013 57088680 52633 Nit2 0 CGTTCTTTGACAATTTCCTTTGG AATTGGCTGTTTAACTTCCCCAT 8 9 7 1.1.2.4.7.9 BCBC-5B-0 14133016 P217538 Cdv3 Enhancer P217538 Enhancer Unique Tile chr9:103227264-103228263 (-) NM_175833;NM_175565; - 3451 103223813 321022 Cdv3 2510010F10Rik|C230084J24Rik|C79446|TPP36 carnitine deficiency-associated gene expressed in ventricle 3 MGI:2448759 Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244; Mm.261025; Mm.390244 9 9 F1 CDV3 55573 0 AGCAGAATGGAACTTGGAACAAA AGATGGCTCACTTAATACGCAGC 8 9 8 1.1.2.4.8.9 BCBC-5B-0 14133035 P218578 A130042E20Rik ProximalPromoter P218578 ProximalPromoter Unique Tile chr10:75912584-75913549 (-) NM_172550 - 246 75912830 216119 A130042E20Rik C21orf57|ORF57|ORF66 RIKEN cDNA A130042E20 gene MGI:2656825 Mm.344778; Mm.383253; Mm.344778; Mm.383253; Mm.344778; Mm.383253; Mm.344778; Mm.383253; Mm.344778; Mm.383253 10 10 C1 C21orf57 54059 NM_019434 + 102 75912686 54387 Mcm3ap 0 CACAGATCAACAGGTTTTGGACA GACCGGAAGTTGGTCCTACAAAT 8 9 9 1.1.2.4.9.9 BCBC-5B-0 14133054 P219328 Olfr44 ProximalPromoter P219328 ProximalPromoter Unique Tile chr9:39235887-39236909 (-) NM_146830 - 65 39235822 18343 Olfr44 IB3|MOR171-5 olfactory receptor 44 MGI:1333829 Mm.246538 9 9 A5.1 NM_207141 - 14592 39221295 258242 Olfr955 1 TCACAGAGAAACCCTGTCAAAAA TCCATGTACTCAAGGTCCCCTTA 8 9 10 1.1.2.4.10.9 BCBC-5B-0 14133073 P220450 ProximalPromoter P220450 ProximalPromoter Duplication Tile chr7:19574198-19575170 (+) 0 TGTCCTTTGTGCCTGAGACAATA CTGTGTCACTCTTTGCCTGAGAA 8 9 11 1.1.2.4.11.9 BCBC-5B-0 14133092 P221290 Crhr1 Enhancer P221290 Enhancer Unique Tile chr11:103949330-103950253 (+) NM_007762 + 187 103949143 12921 Crhr1 CRFR1|Crhr|MGC124237|MGC124240 corticotropin releasing hormone receptor 1 MGI:88498 Mm.1892 11 11 E1|11 62.0 cM CRHR1 1394 1 CCTCTACCTGGACCTCTAAAGCC TTTAAACGCGTGGTGGTTTAACT 8 9 12 1.1.2.4.12.9 BCBC-5B-0 14133111 P222040 Cldn4 Enhancer P222040 Enhancer Unique Tile chr5:135235418-135236321 (-) NM_009903 - 3885 135231533 12740 Cldn4 CEP-R|Cpetr|Cpetr1 claudin 4 MGI:1313314 Mm.7339 5 5 G2|5 75.0 cM CLDN4 1364 NM_024479 + 18398 135217020 79565 Wbscr27 0 ACAGCCCTTCCTATTTCCTGTTC AAATCAACAAGACTGGGCATGAT 8 9 13 1.1.2.4.13.9 BCBC-5B-0 14133130 P223162 Olfr1504 ProximalPromoter P223162 ProximalPromoter Unique Tile chr19:13955196-13956275 (-) NM_146634 - 31 13955227 258627 Olfr1504 MOR212-2 olfactory receptor 1504 MGI:3031338 Mm.271476 19 - NM_146797 + 26383 13928813 258793 Olfr1502 0 GAATGGTGTCAGGGGTCATTTTA AATTCTGTCAATCTGGTGCCATT 8 9 14 1.1.2.4.14.9 BCBC-5B-0 14133149 P223912 Olfr1034 ProximalPromoter P223912 ProximalPromoter Unique Tile chr2:85841130-85842196 (+) NM_001011872 + 5126 85847322 258216 Olfr1034 MOR245-14P olfactory receptor 1034 MGI:3030868 Mm.330363 2 2 D OR5M9 390162 NM_146578 + 19652 85821478 258571 Olfr1033 0 GCACATGGCATTTATTCATCAGA CCCAAAAGGACAAATTCAGTCAC 8 9 15 1.1.2.4.15.9 BCBC-5B-0 14133168 P224752 Atg9a ProximalPromoter P224752 ProximalPromoter Unique Tile chr1:75075179-75076191 (-) NM_001003917 - 77 75075102 245860 Atg9a AU019532|Apg9l1|Atg9|Atg9l1|MGC105176 autophagy-related 9A (yeast) MGI:2138446 Mm.358931 1 1 C3 ATG9A 79065 NM_026187 + 102 75075281 52231 D1Ertd161e 0 AGAAAACACAGCCGAAGACAAAC GAGACATGGTGGCCAATTCTTAG 8 9 16 1.1.2.4.16.9 BCBC-5B-0 14133187 P001499 Blank P001499 Buffer Control Negative Blank 8 9 17 1.1.2.4.17.9 BCBC-5B-0 14133206 P225866 Pdx1 P225866 Pdx1 Unique Tile chr8:117665897-117666696 (+) 0 CAAGCCCATTCATTCATTCATTC CAAATTTAACCTTCTTCTGCCCC 8 9 18 1.1.2.4.18.9 BCBC-5B-0 14133225 P226508 Zfp516 Pdx1 P226508 Pdx1 Unique Tile chr18:83061239-83062148 (+) NM_183033 + 27898 83090046 329003 Zfp516 C330029B10Rik|D230016L03|Zfp26l|mKIAA0222 zinc finger protein 516 MGI:2443957 Mm.326526 18 18 E3 0 GTCACAAGAGCTCACGGGATTT CATTAGCATATGTGCTGACTGGC 8 9 19 1.1.2.4.19.9 BCBC-5B-0 14133244 P003244 Blank P003244 Buffer Control Negative Blank 8 9 20 1.1.2.4.20.9 BCBC-5B-0 14132884 P211340 PufferfishHuman P211340 PufferfishHuman Unique Tile chr15:40869894-40870875 (-) 0 ATCAAAGATAATGAAGGCGCAAG CACCTTCCTGGAGAGTTTCTTGA 8 10 1 1.1.2.4.1.10 BCBC-5B-0 14132903 P212090 Hlxb9 ChickenHuman P212090 ChickenHuman Unique Tile chr5:29817461-29818483 (+) NM_019944 - 8204 29809257 15285 Hlxb9 HB9|MNR2 homeobox gene HB9 MGI:109160 Mm.103760 5 5 B1 HLXB9 3110 0 GGAGGTCCCTTCTGACTGATTTT AGATCACAAGCTAAAAGGCATCG 8 10 2 1.1.2.4.2.10 BCBC-5B-0 14132922 P212930 Cox6a1 Enhancer P212930 Enhancer Unique Tile chr5:115608749-115609650 (-) NM_007748 - 304 115609954 12861 Cox6a1 VIaL cytochrome c oxidase, subunit VI a, polypeptide 1 MGI:103099 Mm.43415 5 5 F|5 60.0 cM COX6A1 1337 NM_026933 + 6501 115602248 69076 Triap1 0 ATGCTCAACGTGTTCCTCAAGTC TTATCTAGAGGCCTTAGGAGGGG 8 10 3 1.1.2.4.3.10 BCBC-5B-0 14132941 P214052 Prkca Enhancer P214052 Enhancer Unique Tile chr11:108158506-108159460 (-) NM_011101 - 300 108159760 18750 Prkca Pkca protein kinase C, alpha MGI:97595 Mm.222178 11 11 E1|11 68.0 cM PRKCA 5578 0 CAGGACTCCTCCGAGAACTTAGA CTGACACTTGGTGTTCAAAGTCG 8 10 4 1.1.2.4.4.10 BCBC-5B-0 14132960 P214802 Pfkp Enhancer P214802 Enhancer Unique Tile chr13:6646322-6647407 (-) NM_019703 - 549 6647956 56421 Pfkp 1200015H23Rik|9330125N24Rik|PFK-C phosphofructokinase, platelet MGI:1891833 Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434; Mm.273874; Mm.395434 13 13 A1 PFKP 5214 0 TTTCCTGGAATTAGGTACAGGGC TATGGTGACTAACGTTGCCATTG 8 10 5 1.1.2.4.5.10 BCBC-5B-0 14132979 P215924 Ddo Enhancer P215924 Enhancer Unique Tile chr10:40319588-40320500 (+) NM_027442 + 114 40319474 70503 Ddo 5330420D20Rik|5730402C02Rik|AI467244 D-aspartate oxidase MGI:1925528 Mm.252862 10 10 B1 DDO 8528 0 GGCCAGAGATTGATAGGTCACAC GCCTCTTTGAGTAGTAAACGGCA 8 10 6 1.1.2.4.6.10 BCBC-5B-0 14132998 P216764 Mylpf Enhancer P216764 Enhancer Unique Tile chr7:127000816-127001743 (-) NM_016754 + 1012 127002755 17907 Mylpf 2410014J02Rik|MLC-2|Mlc2 myosin light chain, phosphorylatable, fast skeletal muscle MGI:97273 Mm.14526 7 7 F3 MYLPF 29895 NM_144522 - 1200 126999616 68449 Tbc1d10b 0 GCCAATGCCACTAAGACATTTTC ACACTGCAATTTCTGAAACCCAT 8 10 7 1.1.2.4.7.10 BCBC-5B-0 14133017 P217514 Idh2 Enhancer P217514 Enhancer Unique Tile chr7:79951977-79952892 (+) NM_173011 - 35942 79988834 269951 Idh2 E430004F23|IDPm|Idh-2 isocitrate dehydrogenase 2 (NADP+), mitochondrial MGI:96414 Mm.246432 7 7 D2|7 41.0 cM IDH2 3418 0 AGCTATCCTTGCAATCACCAAAG TAATCAATGGACCCTGACCAGTT 8 10 8 1.1.2.4.8.10 BCBC-5B-0 14133036 P218554 Krt12 Enhancer P218554 Enhancer Unique Tile chr11:99235872-99236960 (-) NM_010661 - 1386 99238346 268482 Krt12 A830036E02|AI835216|E130011P14|K12|Krt1-12 keratin 12 MGI:96687 Mm.342959 11 11 D|11 58.0 cM KRT12 3859 NM_023256 - 17266 99254226 66809 Krt20 0 GCTTTAGGACTCCGTGTTCATGT TGGCCCATGTCTGTAATCCTAGT 8 10 9 1.1.2.4.9.10 BCBC-5B-0 14133055 P219304 Serpina3m Enhancer P219304 Enhancer Unique Tile chr12:104785466-104786458 (+) NM_009253 + 1777 104788235 20717 Serpina3m 3e46|AI195004|MMCM7|MMSPi2.4|Spi-2l|Spi-2rs1|Spi2-rs1|Spi2.4|spi2 serine (or cysteine) peptidase inhibitor, clade A, member 3M MGI:98378 Mm.422816 12 12 E NM_009252 + 21320 104807778 20716 Serpina3n 0 GGAGTCTTGCGACCTAAGGTTTT TGAATATCTTCCCCTCCTTCTCC 8 10 10 1.1.2.4.10.10 BCBC-5B-0 14133074 P220144 Ppp3cb ProximalPromoter P220144 ProximalPromoter Unique Tile chr14:19334891-19335869 (-) NM_008914 - 205 19335096 19056 Ppp3cb 1110063J16Rik|Calnb|CnAbeta protein phosphatase 3, catalytic subunit, beta isoform MGI:107163 Mm.274432 14 14 B PPP3CB 5532 NM_030180 - 14343 19350212 78787 Usp54 1 GCAAGCACCTTTATCCATTGAAC CTTCGGGTACCTCTCACCTTTG 8 10 11 1.1.2.4.11.10 BCBC-5B-0 14133093 P221266 Olfr821 ProximalPromoter P221266 ProximalPromoter Unique Tile chr10:129435699-129436662 (+) NM_146776 + 86 129436576 258772 Olfr821 MOR109-1 olfactory receptor 821 MGI:3030655 Mm.391459 10 - NM_146675 + 15388 129420311 258670 Olfr820 0 CAGCAGAGCAAGGACACTAACAA AGAAGGACGAAAACAACCACTTG 8 10 12 1.1.2.4.12.10 BCBC-5B-0 14133112 P222016 Olfr513 ProximalPromoter P222016 ProximalPromoter Unique Tile chr7:108545206-108546134 (+) NM_146723 + 100 108546034 258718 Olfr513 MGC130300|MGC130301|MOR195-1 olfactory receptor 513 MGI:3030347 Mm.223152 7 - NM_146724 + 40675 108504531 258719 Olfr512 0 AGAGCTCTGGCAGATATCCAAAA GAATCAGGAACACCACAAAGAGG 8 10 13 1.1.2.4.13.10 BCBC-5B-0 14133131 P223138 Tram1 ProximalPromoter P223138 ProximalPromoter Unique Tile chr1:13575318-13576128 (-) NM_028173 - 240 13575078 72265 Tram1 1810049E02Rik|MGC1174|TRAMP translocating chain-associating membrane protein 1 MGI:1919515 Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622; Mm.28765; Mm.392622 1 1 A3 TRAM1 23471 0 AAGTACTGGGATTAAAGGCCCG CTTCCTGGGAATGGTTCATACCT 8 10 14 1.1.2.4.14.10 BCBC-5B-0 14133150 P223978 Olfr1294 ProximalPromoter P223978 ProximalPromoter Unique Tile chr2:111339054-111340150 (-) NM_146885 - 72 111339126 258887 Olfr1294 MOR248-7 olfactory receptor 1294 MGI:3031128 Mm.223297 2 - NM_146403 - 26131 111366281 258398 Olfr1295 2 CAATCTGTGAGCAAAGCAAGCTA CCTGAATATTCTTTGAATGGGCA 8 10 15 1.1.2.4.15.10 BCBC-5B-0 14133169 P224728 3110005G23Rik ProximalPromoter P224728 ProximalPromoter End Repeat Tile chr8:67875082-67875981 (+) NM_028427 + 192 67876173 73067 3110005G23Rik - RIKEN cDNA 3110005G23 gene MGI:1920317 Mm.294445 8 8 B3.3 FLJ38482 201931 NM_001033429 - 40652 67916633 333307 Trim75 1 GTGTGTGTGTGTGTGTGTGTGTG TCGAGCAACCATTTAAACCAAGT 8 10 16 1.1.2.4.16.10 BCBC-5B-0 14133188 P001475 Blank P001475 Buffer Control Negative Blank 8 10 17 1.1.2.4.17.10 BCBC-5B-0 14133207 P225842 Plekhf2 Pdx1 P225842 Pdx1 Unique Tile chr4:10935006-10935715 (+) NM_175175 - 289 10934717 71801 Plekhf2 1110070J07Rik|AA673237|ZFYVE18 pleckstrin homology domain containing, family F (with FYVE domain) member 2 MGI:1919051 Mm.34351 4 4 A1 PLEKHF2 79666 2 GCCTGACCTGACTTTCCTGACT CTCCCAAGTGCTGGGATTAAAG 8 10 18 1.1.2.4.18.10 BCBC-5B-0 14133226 P226970 Lsm11 Pdx1 P226970 Pdx1 Unique Tile chr11:45798056-45798980 (+) NM_028185 - 9698 45788358 72290 Lsm11 2210404M20Rik|AV079530 U7 snRNP-specific Sm-like protein LSM11 MGI:1919540 Mm.249827 11 11 B1.1 LSM11 134353 NM_173384 + 24752 45823732 214105 Sox30 0 CAACTGCTAGGCTTCAATCCACT AGTCAATAGAGAAACCTCCACCG 8 10 19 1.1.2.4.19.10 BCBC-5B-0 14133245 P003244 Blank P003244 Buffer Control Negative Blank 8 10 20 1.1.2.4.20.10 BCBC-5B-0 14132885 P211316 Foxp1 PufferfishHuman P211316 PufferfishHuman End Repeat Tile chr6:99167854-99168789 (+) NM_053202 - 39373 99128481 108655 Foxp1 3110052D19Rik|4932443N09Rik|AI461938|AW494214 forkhead box P1 MGI:1914004 Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795; Mm.234965; Mm.392313; Mm.401795 6 6 E1 FOXP1 27086 1 CACACACACACACACACACACAC GGCAGCACAGAATCCCTATACAC 8 11 1 1.1.2.4.1.11 BCBC-5B-0 14132904 P212156 miRNA P212156 miRNA Unique Tile chr13:48546790-48547747 (+) mmu-let-7d 0 CCTGTTTTAGGAGATACCACCCC ACATTGGGGTAACTGGGAAGTTT 8 11 2 1.1.2.4.2.11 BCBC-5B-0 14132923 P212906 Cd82 Enhancer P212906 Enhancer Unique Tile chr2:93259780-93260696 (-) NM_007656 - 2637 93263333 12521 Cd82 AA682076|AL023070|C33|Kai1|Tspan27 CD82 antigen MGI:104651 Mm.4261 2 2 E1|2 49.6 cM CD82 3732 0 ACAGGTTAGGAACTGCAGACAGC TCGGGGTTGACTCTTCTCAGTAA 8 11 3 1.1.2.4.3.11 BCBC-5B-0 14132942 P214028 Oprs1 Enhancer P214028 Enhancer Unique Tile chr4:41933002-41934039 (-) NM_011014 - 3178 41929824 18391 Oprs1 AL024364|mSigmaR1 opioid receptor, sigma 1 MGI:1195268 Mm.425181 4 4 A5-B2 OPRS1 10280 NM_016658 + 9974 41944013 14430 Galt 0 GGTGGTGTTGTTGTTGTTGTTGT CGTCCTCTCAGCCTTAACCACTA 8 11 4 1.1.2.4.4.11 BCBC-5B-0 14132961 P214778 Pitpnb Enhancer P214778 Enhancer Unique Tile chr5:111571128-111572126 (+) NM_019640 + 19 111571109 56305 Pitpnb AI256223|AU040890 phosphatidylinositol transfer protein, beta MGI:1927542 Mm.200516 5 - PITPNB 23760 NM_024477 + 42617 111528511 209683 Ttc28 1 TAAGGAATTGTGAGTGGGTCGTT CTTTAAAAACACCAAATGCTGGC 8 11 5 1.1.2.4.5.11 BCBC-5B-0 14132980 P215618 Mlstd2 Enhancer P215618 Enhancer Unique Tile chr7:113305454-113306363 (+) NM_026143;NM_027379; + 388 113305066 67420 Mlstd2 2600011M19Rik|3732409C05Rik|FAR1 male sterility domain containing 2 MGI:1914670 Mm.206919 7 7 F2 MLSTD2 84188 0 CCTGGGATTGAGAGGAAGAAAGT GCTTCAAAGAGGAAAGCAGTTGA 8 11 6 1.1.2.4.6.11 BCBC-5B-0 14132999 P216740 Fus Enhancer P216740 Enhancer Unique Tile chr7:127758711-127759616 (+) NM_139149 + 10 127758701 233908 Fus D430004D17Rik|D930039C12Rik|Fus1|Tls fusion, derived from t(12;16) malignant liposarcoma (human) MGI:1353633 Mm.277680; Mm.29028; Mm.277680; Mm.29028; Mm.277680; Mm.29028; Mm.277680; Mm.29028; Mm.277680; Mm.29028; Mm.277680; Mm.29028; Mm.277680; Mm.29028; Mm.277680; Mm.29028; Mm.277680; Mm.29028; Mm.277680; Mm.29028; Mm.277680; Mm.29028; Mm.277680; Mm.29028; Mm.277680; Mm.29028; Mm.277680; Mm.29028; Mm.277680; Mm.29028; Mm.277680; Mm.29028; Mm.277680; Mm.29028; Mm.277680; Mm.29028; Mm.277680; Mm.29028 7 7 F3 FUS 2521 NM_176936 + 14610 127774226 319527 B230325K18Rik 1 ACATGGCTTCAAACGGTATGTG ACTTTCAACAATCTGGGAAGCTG 8 11 7 1.1.2.4.7.11 BCBC-5B-0 14133018 P217490 Nucks1 Enhancer P217490 Enhancer Unique Tile chr1:133738372-133739384 (+) NM_175294 + 271 133738101 98415 Nucks1 2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks nuclear casein kinase and cyclin-dependent kinase substrate 1 MGI:1934811 Mm.246869; Mm.392848; Mm.430701; Mm.246869; Mm.392848; Mm.430701; Mm.246869; Mm.392848; Mm.430701; Mm.246869; Mm.392848; Mm.430701; Mm.246869; Mm.392848; Mm.430701; Mm.246869; Mm.392848; Mm.430701; Mm.246869; Mm.392848; Mm.430701; Mm.246869; Mm.392848; Mm.430701; Mm.246869; Mm.392848; Mm.430701; Mm.246869; Mm.392848; Mm.430701 1 1 E4 NUCKS1 64710 NM_144875 + 43216 133695156 226422 Rab7l1 1 GGAGTCGTGCTCCTGACTACCA CTTGTCAAGGAGACATAGTGGGG 8 11 8 1.1.2.4.8.11 BCBC-5B-0 14133037 P218530 Entpd1 Enhancer P218530 Enhancer Unique Tile chr19:40713224-40714202 (+) NM_009848 + 106 40713118 12495 Entpd1 2610206B08Rik|AA408691|Cd39|NTPDase-1 ectonucleoside triphosphate diphosphohydrolase 1 MGI:102805 Mm.2824 19 19 C3|19 35.5 cM ENTPD1 953 NM_026260 - 47698 40665526 67590 4930521E07Rik 0 CTGATTTGATCCAAACCCTTCAG AAGTGGAGGTGATAGGGACAACA 8 11 9 1.1.2.4.9.11 BCBC-5B-0 14133056 P219370 Il17ra Enhancer P219370 Enhancer Unique Tile chr6:120429147-120430060 (+) NM_008359 + 295 120428852 16172 Il17ra AW538159|Cdw217|Il17r|VDw217 interleukin 17 receptor A MGI:107399 Mm.4481 6 6 F1|6 55.2 cM IL17RA 23765 NM_033567 - 29366 120459426 94047 Cecr6 1 GAGGGTGGTGAAGAGGTGTCAG TCCTTTTGTTTCATATCCTCCGA 8 11 10 1.1.2.4.10.11 BCBC-5B-0 14133075 P220120 V1rg5 ProximalPromoter P220120 ProximalPromoter Unique Tile chr7:10751710-10752650 (+) NM_134206 + 12 10752638 171240 V1rg5 - vomeronasal 1 receptor, G5 MGI:2159644 Mm.377196 7 7 A1 NM_134207 + 33556 10786206 171241 V1rg6 0 ATGGTGATGTTGAGCCTGATTTT TTCAAAAGCCATCCTGATTCCTA 8 11 11 1.1.2.4.11.11 BCBC-5B-0 14133094 P221242 Ankrd1 Enhancer P221242 Enhancer Unique Tile chr19:36180818-36181788 (-) NM_013468 - 3189 36184977 107765 Ankrd1 Alrp|CARP|Crap ankyrin repeat domain 1 (cardiac muscle) MGI:1097717 Mm.10279 19 19 C3 ANKRD1 27063 NM_019428 + 31944 36148874 54364 Rpp30 0 AAAACCAGTCAGAAGCTCATTGC ACTGAGTGTTCCTGGTCTTGAGG 8 11 12 1.1.2.4.12.11 BCBC-5B-0 14133113 P221992 Slc5a4b Enhancer P221992 Enhancer Unique Tile chr10:75550415-75551340 (-) NM_023219 - 3394 75554734 64454 Slc5a4b 2010104G07Rik|SAAT1|SGLT3-b|pSGLT2 solute carrier family 5 (neutral amino acid transporters, system A), member 4b MGI:1890478 Mm.155678 10 10 C1 NM_133184 + 39826 75591166 64452 Slc5a4a 0 TGAGGTGTGGTTTCCACCTCTAT ATACTCACCCCAGCCTTGATGTA 8 11 13 1.1.2.4.13.11 BCBC-5B-0 14133132 P222832 Il13 ProximalPromoter P222832 ProximalPromoter Unique Tile chr11:53478191-53479181 (-) NM_008355 - 66 53478125 16163 Il13 Il-13 interleukin 13 MGI:96541 Mm.1284 11 11 B1.3|11 29.0 cM IL13 3596 NM_021283 - 16103 53462088 16189 Il4 0 TCACTACCCAATAGGCAAATGCT TTGTTGGGCATTATCTGAAAACC 8 11 14 1.1.2.4.14.11 BCBC-5B-0 14133151 P223954 Gt4-1 ProximalPromoter P223954 ProximalPromoter Unique Tile chr16:13177632-13178615 (+) NM_181860 + 41 13178656 107459 Gt4-1 MGC41582 gene trap insertion site 4-1 MGI:107691 Mm.390857 16 16 A1 0 TGCTAACAGCTTCAGCTTCTCCT ATTACATGCCAGCAAGGGATAGA 8 11 15 1.1.2.4.15.11 BCBC-5B-0 14133170 P224704 Utp14b; Acsl3; Acsl3 ProximalPromoter P224704 ProximalPromoter Unique Tile chr1:78535811-78536752 (+) NM_001001981;NM_001033606;NM_028817; + 145 78536897 195434; 74205; 74205 Utp14b; Acsl3; Acsl3 4932411L21Rik|jsd; 2610510B12Rik|ACS3|C85929|Facl3|PRO2194; 2610510B12Rik|ACS3|C85929|Facl3|PRO2194 UTP14, U3 small nucleolar ribonucleoprotein, homolog B (yeast); acyl-CoA synthetase long-chain family member 3; acyl-CoA synthetase long-chain family member 3 MGI:2445092; MGI:1921455; MGI:1921455 Mm.276016; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252; Mm.276016; Mm.427252 1 1 C4|1 24.1 cM ; ACSL3; ACSL3 ; 2181; 2181 2 CAGCAACTCGACCTTTCACCTAC AGGTTACTATGGGTCATTCTGCG 8 11 16 1.1.2.4.16.11 BCBC-5B-0 14133189 P225826 4931417G12Rik ProximalPromoter P225826 ProximalPromoter Unique Tile chr6:113566397-113567248 (-) NM_027633 - 33 113566430 70979 4931417G12Rik - RIKEN cDNA 4931417G12 gene MGI:1918229 Mm.72959 6 6 E3 C3orf24 115795 NM_133937 + 3300 113570548 101314 6720456B07Rik 2 TGTATACACAGTGGGCACTGGAC GGGGCTCACCTACTAAACTCCAC 8 11 17 1.1.2.4.17.11 BCBC-5B-0 14133208 P225908 Pdx1 P225908 Pdx1 Unique Tile chr19:32391522-32392338 (+) 0 ACAGCAGGAAACATTTGACACCT CCACCATCTGGTGAGTACCTCTT 8 11 18 1.1.2.4.18.11 BCBC-5B-0 14133227 P226946 Pdx1 P226946 Pdx1 Unique Tile chr12:110174041-110174964 (+) 0 GAAGAGGTCCCAAAAAGGAAAGA ACCAGCACAGACCTGACCATC 8 11 19 1.1.2.4.19.11 BCBC-5B-0 14133246 P003148 Blank P003148 Buffer Control Negative Blank 8 11 20 1.1.2.4.20.11 BCBC-5B-0 14132886 P211010 PufferfishHuman P211010 PufferfishHuman Unique Tile chr2:57609049-57609950 (-) 0 CATCAGACTATCAGGACCCCAAC CTGAAAAGAAAAAGGGGAAGCAT 8 12 1 1.1.2.4.1.12 BCBC-5B-0 14132905 P212132 Slc25a25 ChickenHuman P212132 ChickenHuman Unique Tile chr2:32237688-32238622 (-) NM_146118 - 7390 32246012 227731 Slc25a25 1110030N17Rik|MCSC|MGC36388|mKIAA1896 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 MGI:1915913 Mm.37395; Mm.427773; Mm.37395; Mm.427773; Mm.37395; Mm.427773; Mm.37395; Mm.427773; Mm.37395; Mm.427773; Mm.37395; Mm.427773; Mm.37395; Mm.427773; Mm.37395; Mm.427773; Mm.37395; Mm.427773; Mm.37395; Mm.427773; Mm.37395; Mm.427773; Mm.37395; Mm.427773 2 2 B SLC25A25 114789 NM_133783 + 19422 32218266 96979 Ptges2 0 GAGTCTCCCACACTGGCTCTTTA CTGAGGAAAGATGGACAGAAGGA 8 12 2 1.1.2.4.2.12 BCBC-5B-0 14132924 P212882 Calu Enhancer P212882 Enhancer Unique Tile chr6:29298215-29299296 (+) NM_184053;NM_007594; + 25 29298190 12321 Calu 9530075H20Rik calumenin MGI:1097158 Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075; Mm.248254; Mm.392075 6 6 A3.3 CALU 813 NM_207258 + 29066 29269149 330277 BC048651 0 AAAGGTAAGTTCTGTGGTGCTGG GTCCCACATTTGGACAGAAGAAC 8 12 3 1.1.2.4.3.12 BCBC-5B-0 14132943 P214004 Nf2 Enhancer P214004 Enhancer Unique Tile chr11:4748025-4748961 (-) NM_010898 - 452 4749413 18016 Nf2 merlin neurofibromatosis 2 MGI:97307 Mm.297109 11 11 A1|11 0.25 cM NF2 4771 NM_008698 + 25044 4774005 18082 Nipsnap1 0 AGCTTCAGCTCACTCAAGAGGAA AGCATCCAGCTCATTAACACACA 8 12 4 1.1.2.4.4.12 BCBC-5B-0 14132962 P214844 Slc5a1 Enhancer P214844 Enhancer Unique Tile chr5:33422574-33423537 (+) NM_019810 + 1467 33421107 20537 Slc5a1 Sglt1 solute carrier family 5 (sodium/glucose cotransporter), member 1 MGI:107678 Mm.25237 5 - SLC5A1 6523 0 GCCCTGGATAGTTCTTGCTTGTA GAGCCATATAAAAATGGGCTGTG 8 12 5 1.1.2.4.5.12 BCBC-5B-0 14132981 P215594 Zfp422 Enhancer P215594 Enhancer Unique Tile chr6:116593470-116594422 (-) NM_026057 - 174 116594596 67255 Zfp422 2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26 zinc finger protein 422 MGI:1914505 Mm.18810 6 6 E3 ZNF22 7570 NM_145980 + 21895 116616317 213393 8430408G22Rik 0 CGGAGGAGAAAGACTCCATTGTA GTCTGGAAGCTGTCAAAACAACC 8 12 6 1.1.2.4.6.12 BCBC-5B-0 14133000 P216716 Stab1 Enhancer P216716 Enhancer Unique Tile chr14:30000772-30001738 (-) NM_138672 - 3191 29997581 192187 Stab1 FEEL-1|KIAA0246|MS-1|STAB-1|mKIAA0246 stabilin 1 MGI:2178742 Mm.220821 14 14 B STAB1 23166 NM_022656 - 18821 30020559 64652 Nisch 0 CTGAGATAGGGTCATCTCCCCAG GTGACCCTGTGTGTCATCAAAAA 8 12 7 1.1.2.4.7.12 BCBC-5B-0 14133019 P217466 Pogk Enhancer P217466 Enhancer Unique Tile chr1:168241965-168242993 (-) NM_175170 - 3464 168246457 71592 Pogk 9130401E23Rik|BASS2|mKIAA1513 pogo transposable element with KRAB domain MGI:1918842 Mm.192094 1 1 H2.3 POGK 57645 NM_030245 + 25926 168216039 27878 Tada1l 0 AGTTCCGTAGCAATCCCCATATT TCCTGATATGACCCACAGAGTGA 8 12 8 1.1.2.4.8.12 BCBC-5B-0 14133038 P218224 Map3k7ip1 ProximalPromoter P218224 ProximalPromoter Unique Tile chr15:79959317-79960249 (+) NM_025609 + 159 79960408 66513 Map3k7ip1 2310012M03Rik|Tab1 mitogen-activated protein kinase kinase kinase 7 interacting protein 1 MGI:1913763 Mm.288245 15 15 E2 MAP3K7IP1 10454 NM_010795 + 40726 80000975 17309 Mgat3 0 AATAAAATGCTTGATACTGGGGG AACCCCATCAGCCTACTTTCTTC 8 12 9 1.1.2.4.9.12 BCBC-5B-0 14133057 P219346 Mapk8ip2 Enhancer P219346 Enhancer Unique Tile chr15:89282254-89283218 (+) NM_021921 + 356 89281898 60597 Mapk8ip2 3230402N03Rik|AI847694|AW049958|Jip2|R75148 mitogen-activated protein kinase 8 interacting protein 2 MGI:1926555 Mm.173337; Mm.391684; Mm.173337; Mm.391684; Mm.173337; Mm.391684; Mm.173337; Mm.391684; Mm.173337; Mm.391684; Mm.173337; Mm.391684; Mm.173337; Mm.391684; Mm.173337; Mm.391684; Mm.173337; Mm.391684; Mm.173337; Mm.391684 15 15 E3 MAPK8IP2 23542 NM_009713 - 20661 89303879 11883 Arsa 0 CCCCACACAGAGATACACATTCA TAGGAAAGAAGACTGGCACCAAG 8 12 10 1.1.2.4.10.12 BCBC-5B-0 14133076 P220096 Ctsg Enhancer P220096 Enhancer Unique Tile chr14:55051711-55052688 (-) NM_007800 - 3957 55056645 13035 Ctsg - cathepsin G MGI:88563 Mm.4858 14 14 C3|14 20.5 cM CTSG 1511 NM_008572 - 12443 55039268 17231 Mcpt8 0 GAGACGGCAGTTCCTGTCTAAAA GTGTGTGTGTAGTCGGGTGGTAA 8 12 11 1.1.2.4.11.12 BCBC-5B-0 14133095 P221218 Olfr1395 ProximalPromoter P221218 ProximalPromoter Unique Tile chr11:48990801-48991775 (+) NM_146877 + 94 48991681 258877 Olfr1395 MOR277-1 olfactory receptor 1395 MGI:3031229 Mm.223291 11 - NM_146276 + 11663 49003438 258273 Olfr1394 0 CGCCATCATTTTTAGCCACTAAG TGATGGAGAAGAGGAAGAGATGC 8 12 12 1.1.2.4.12.12 BCBC-5B-0 14133114 P222058 Frrs1 Enhancer P222058 Enhancer Unique Tile chr3:116874402-116875316 (+) NM_009146 + 16212 116858190 20321 Frrs1 AI131732|Sdfr2 ferric-chelate reductase 1 MGI:108076 Mm.66293 3 3 G1 FRRS1 391059 0 AGTAGAGTGACGACTTTGGCAGC CATAGAACCCAAAAACTCCCTCC 8 12 13 1.1.2.4.13.12 BCBC-5B-0 14133133 P222808 2900093B09Rik Enhancer P222808 Enhancer Unique Tile chr7:40673969-40674874 (+) NM_021387 + 1539 40672430 58188 2900093B09Rik AB030198 RIKEN cDNA 2900093B09 gene MGI:1914525 Mm.150675 7 7 B3 0 TTCGGTTCCAAGTGGAGAATTTA GGAGAAGGAGATGTCTGAGTGGA 8 12 14 1.1.2.4.14.12 BCBC-5B-0 14133152 P223930 Adra1a ProximalPromoter P223930 ProximalPromoter Unique Tile chr14:65588399-65589473 (+) NM_013461 + 106 65589367 11549 Adra1a Adra1c|MGC130524|[a]1a adrenergic receptor, alpha 1a MGI:104773 Mm.57064 14 14 D1 ADRA1A 148 0 CCTAAGTTAACCAGAGCGTGGAA AACTCCACGATCACCAGTTTGAT 8 12 15 1.1.2.4.15.12 BCBC-5B-0 14133171 P224680 A930013B10Rik ProximalPromoter P224680 ProximalPromoter Unique Tile chr11:88881083-88882133 (+) NM_001001497 + 47 88882180 414094 A930013B10Rik - RIKEN cDNA A930013B10 gene MGI:3041185 Mm.124287 11 11 C NM_019505 - 4608 88876475 56077 Dgke 2 ACTCAAAGATCCACCTGCTTCTG AACTCCTGGGTAGGCTAAGTTGG 8 12 16 1.1.2.4.16.12 BCBC-5B-0 14133190 P225520 Eif4b ProximalPromoter P225520 ProximalPromoter Unique Tile chr15:101909083-101910054 (+) NM_145625 + 35 101910019 75705 Eif4b 2310046H11Rik|AL024095|C85189|Eif4a2 eukaryotic translation initiation factor 4B MGI:95304 Mm.290022 15 15 F3 EIF4B 1975 NM_153533 + 20209 101930263 209039 Tenc1 0 GGCAACAAATGGCTCTTAATGAC AGTCCGTTAGGGAGATGGTCTTC 8 12 17 1.1.2.4.17.12 BCBC-5B-0 14133209 P225884 Eif4ebp2 Pdx1 P225884 Pdx1 Unique Tile chr10:60847016-60847818 (+) NM_010124 - 208 60848026 13688 Eif4ebp2 2810011I19Rik|4E-BP2|BC010348|PHAS-II eukaryotic translation initiation factor 4E binding protein 2 MGI:109198 Mm.259516 10 10 B4-B5|10 32.0 cM EIF4EBP2 1979 NM_153542 + 23371 60871189 216011 Lrrc20 0 AGGCAAAGTTCTGAGATTAGGGA AGCTACCTCAGGACTACTGCACC 8 12 18 1.1.2.4.18.12 BCBC-5B-0 14133228 P226922 Esrrb Pdx1 P226922 Pdx1 Unique Tile chr12:87259780-87260702 (+) NM_011934 + 9561 87250219 26380 Esrrb ERRb|Err2|Estrrb|Nr3b2 estrogen related receptor, beta MGI:1346832 Mm.235550 12 12 D2|12 41.0 cM ESRRB 2103 0 GATTGTCTGCTCTGACAAACCCT CCCCACTCTCATCTTTTCTCTCA 8 12 19 1.1.2.4.19.12 BCBC-5B-0 14133247 P003052 Blank P003052 Buffer Control Negative Blank 8 12 20 1.1.2.4.20.12 BCBC-5B-0 14132887 P210986 Hoxa2 PufferfishHuman P210986 PufferfishHuman Unique Tile chr6:52093921-52094951 (+) NM_010451 - 440 52094361 15399 Hoxa2 AI324701|HOX1.11|Hox-1.11|MGC151482|MGC151484 homeo box A2 MGI:96174 Mm.131 6 6 B3|6 26.29 cM HOXA2 3199 NM_010449 - 6021 52087900 15394 Hoxa1 1 TCTCCTTCATCCAGGGATACTCA ACTCTGCTCCTTTCTCTTGCCTT 8 13 1 1.1.2.4.1.13 BCBC-5B-0 14132906 P212108 Insm1 ChickenHuman P212108 ChickenHuman Unique Tile chr2:145953503-145954430 (+) NM_016889 + 39952 145913551 53626 Insm1 IA-1 insulinoma-associated 1 MGI:1859980 Mm.379070 2 2 G1 INSM1 3642 0 AAAAGTGGCCCCTCTGAAGATAC CATAAACATTCAGGGTGGGAGAA 8 13 2 1.1.2.4.2.13 BCBC-5B-0 14132925 P212858 Bapx1 Enhancer P212858 Enhancer Unique Tile chr5:42050627-42051606 (-) NM_007524 - 862 42052468 12020 Bapx1 NKX3.2|Nkx-3.2|Nkx3-2 bagpipe homeobox gene 1 homolog (Drosophila) MGI:108015 Mm.2530 5 5 B3|5 23.0 cM BAPX1 579 0 TGCTAGCGAAGTCTCCAAGTTCT CTTGCTAGAGCAGTAGGGGAACA 8 13 3 1.1.2.4.3.13 BCBC-5B-0 14132944 P213698 Ccng1 Enhancer P213698 Enhancer Unique Tile chr11:40593575-40594574 (-) NM_009831 - 2841 40597415 12450 Ccng1 AI314029 cyclin G1 MGI:102890 Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099; Mm.2103; Mm.378099 11 11 B1.1 CCNG1 900 NM_026023 + 16253 40577322 52653 Nudcd2 1 GTTCTCCCTTAGTTCCCTTTGGA TAGTGCTGGGATTAAAGGCATGT 8 13 4 1.1.2.4.4.13 BCBC-5B-0 14132963 P214820 Serinc1 Enhancer P214820 Enhancer Unique Tile chr10:57216166-57217159 (-) NM_019760 - 3675 57220834 56442 Serinc1 1500011D18Rik|AI315070|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253 serine incorporator 1 MGI:1926228 Mm.29344 10 10 B4 SERINC1 57515 NM_008297 + 41266 57174900 15500 Hsf2 0 GCAGGATTTGTCCTTTGCATACT TAGTCACAGTGGAGTTGTTCCCA 8 13 5 1.1.2.4.5.13 BCBC-5B-0 14132982 P215570 Nradd Enhancer P215570 Enhancer Unique Tile chr9:110472905-110473835 (-) NM_026012 - 3696 110469209 67169 Nradd 2610311B09Rik|BB104149|NRDD|PLAIDD neurotrophin receptor associated death domain MGI:1914419 Mm.46680 9 9 F2 NM_028312 + 27483 110501318 72654 Ccdc12 0 GATATGAGAGCTTTGAGGACCCA CCTGAGAGGAAGGTGAGTGGTTA 8 13 6 1.1.2.4.6.13 BCBC-5B-0 14133001 P216692 D6Wsu176e Enhancer P216692 Enhancer Unique Tile chr6:22301642-22302546 (-) NM_138587 - 3536 22306082 27999 D6Wsu176e Fam3c DNA segment, Chr 6, Wayne State University 176, expressed MGI:107892 Mm.258484; Mm.400944; Mm.258484; Mm.400944; Mm.258484; Mm.400944; Mm.258484; Mm.400944; Mm.258484; Mm.400944; Mm.258484; Mm.400944; Mm.258484; Mm.400944; Mm.258484; Mm.400944; Mm.258484; Mm.400944; Mm.258484; Mm.400944; Mm.258484; Mm.400944; Mm.258484; Mm.400944; Mm.258484; Mm.400944; Mm.258484; Mm.400944 6 6 A3.1|6 2.0 cM FAM3C 10447 0 TTCAGATGTTCAACCATGCAAAC ACTGGCAAACGCAGCTCTAATAC 8 13 7 1.1.2.4.7.13 BCBC-5B-0 14133020 P217532 Gpr81 Enhancer P217532 Enhancer Unique Tile chr5:124143950-124144872 (-) NM_175520 - 3329 124140621 243270 Gpr81 - G protein-coupled receptor 81 MGI:2441671 Mm.33362 5 5 F GPR81 27198 NM_030701 - 17836 124126114 80885 Gpr109a 0 TGCAGTCACTTCTCATTCGGTTA AGGGGATGGGAGAGAACTGTTAG 8 13 8 1.1.2.4.8.13 BCBC-5B-0 14133039 P218200 Vangl1 ProximalPromoter P218200 ProximalPromoter End Repeat Tile chr3:102333861-102334772 (-) NM_177545 - 192 102333669 229658 Vangl1 KITENIN|Lpp2|STB2|mStbm|stbm|strabismus vang-like 1 (van gogh, Drosophila) MGI:2159344 Mm.331266 3 3 F2.2 VANGL1 81839 1 CTTCACAAAGAGCCTGCATTTTC CACACACACACACACACACACAC 8 13 9 1.1.2.4.9.13 BCBC-5B-0 14133058 P219322 Armcx3 ProximalPromoter P219322 ProximalPromoter Unique Tile chrX:130101875-130102793 (+) NM_027870 + 169 130102962 71703 Armcx3 1200004E24Rik|AI450003|ALEX3 armadillo repeat containing, X-linked 3 MGI:1918953 Mm.425471; Mm.67949; Mm.425471; Mm.67949; Mm.425471; Mm.67949; Mm.425471; Mm.67949; Mm.425471; Mm.67949; Mm.425471; Mm.67949; Mm.425471; Mm.67949; Mm.425471; Mm.67949; Mm.425471; Mm.67949; Mm.425471; Mm.67949 X X E3 ARMCX3 51566 NM_001007578 - 4099 130097776 278097 Armcx6 0 GTGTGAAAACAAACCTGGCTACC TTCCTCCAATTACCAAAACAGGA 8 13 10 1.1.2.4.10.13 BCBC-5B-0 14133077 P220072 Zfp28 ProximalPromoter P220072 ProximalPromoter Unique Tile chr7:5986243-5987145 (+) NM_175247 + 183 5987328 22690 Zfp28 2810438M17Rik|Zfp-28|mkr-5 zinc finger protein 28 MGI:99175 Mm.127014 7 7 A1 ZFP28 140612 NM_177888;NM_001025163; + 18716 5967527 330463 Zfp78 1 CTGATTACCAGCACAAGATTGCT CTGGTTTTTACAAGACCCTGTGG 8 13 11 1.1.2.4.11.13 BCBC-5B-0 14133096 P220912 Hsd3b5 ProximalPromoter P220912 ProximalPromoter Unique Tile chr3:98774608-98775572 (-) NM_008295 - 16 98774592 15496 Hsd3b5 - hydroxysteroid dehydrogenase-5, delta<5>-3-beta MGI:104645 Mm.17910 3 3 F2.2 0 CAAACCTCATGTTGGGTTGATTT GCAGTAGGAATTTTTGGAAGCCT 8 13 12 1.1.2.4.12.13 BCBC-5B-0 14133115 P222034 Tas2r115 ProximalPromoter P222034 ProximalPromoter Unique Tile chr6:132703596-132704505 (-) NM_207020 - 83 132703679 353325 Tas2r115 T2R15|Tas2r15|mGR15|mt2r49 taste receptor, type 2, member 115 MGI:2681223 Mm.377892 6 6 G1|6 63.4 cM NM_207026 + 15917 132720422 387351 Tas2r124 0 GCCAAAAGTCTCATCACCATTTC AGCTATGAATCCATTCCCCAGAT 8 13 13 1.1.2.4.13.13 BCBC-5B-0 14133134 P222784 ProximalPromoter P222784 ProximalPromoter Unique Tile chr1:137326857-137327921 (-) 2 AGTTCCTCATGTTGTGGTGACCT GTACTTAAAGCGACAGAGCCCAA 8 13 14 1.1.2.4.14.13 BCBC-5B-0 14133153 P223906 Fgf16 ProximalPromoter P223906 ProximalPromoter Unique Tile chrX:101966317-101967331 (+) NM_030614 + 72 101967259 80903 Fgf16 - fibroblast growth factor 16 MGI:1931627 Mm.154768 X X C3 FGF16 8823 0 TCCACCACCTCTCAAGACCTTAC GTTCCCCAGAGAGGAGGAGAAG 8 13 15 1.1.2.4.15.13 BCBC-5B-0 14133172 P224746 BC031181 ProximalPromoter P224746 ProximalPromoter Unique Tile chr18:75130181-75131185 (+) NM_001001181 + 79 75131264 407819 BC031181 - cDNA sequence BC031181 MGI:3039614 Mm.29866 18 18 E3 NM_001002239 + 3626 75126555 319195 Rpl17 0 CCTATTTTGGCCAACTTTGAGTG CAAAGCCATATACGTCAGCCAAG 8 13 16 1.1.2.4.16.13 BCBC-5B-0 14133191 P225496 Timd4 ProximalPromoter P225496 ProximalPromoter Unique Tile chr11:46653298-46654328 (+) NM_178759 + 107 46654221 276891 Timd4 B430010N18Rik|Tim4 T-cell immunoglobulin and mucin domain containing 4 MGI:2445125 Mm.69002 11 11 B1.1 TIMD4 91937 0 GGTACCCAAAGAAGCCAAAGAGT CACTGAGCCTAGAATGGAAGCAT 8 13 17 1.1.2.4.17.13 BCBC-5B-0 14133210 P225860 Hdac7a Pdx1 P225860 Pdx1 Unique Tile chr15:97666267-97667066 (+) NM_019572 - 6562 97659705 56233 Hdac7a 5830434K02Rik|Hdac7 histone deacetylase 7A MGI:1891835 Mm.384027 15 15 F2 HDAC7A 51564 0 GAATCTGCTTCTTTGAGCTACGG CAGTAGATGCTCCTGTGAGCAGA 8 13 18 1.1.2.4.18.13 BCBC-5B-0 14133229 P226898 2810407A14Rik Pdx1 P226898 Pdx1 Unique Tile chr16:87633978-87634899 (+) NM_175156 + 38371 87673270 70211 2810407A14Rik - RIKEN cDNA 2810407A14 gene MGI:1917461 Mm.390921 16 16 C3.3 NM_007520 + 45750 87588228 12013 Bach1 0 GAGGCAAGAGCATTTTGTCATCT ATGCTGTGTAGCACACTGAGAGC 8 13 19 1.1.2.4.19.13 BCBC-5B-0 14133248 P002410 Stratagene PCR 8 P002410 Spike Control Negative Stratagene PCR 8 8 13 20 1.1.2.4.20.13 BCBC-5B-0 14132888 P210962 Irx5 PufferfishHuman P210962 PufferfishHuman Unique Tile chr8:95273296-95274261 (+) NM_018826 + 26166 95247130 54352 Irx5 - Iroquois related homeobox 5 (Drosophila) MGI:1859086 Mm.101153 8 8 C5|8 43.3 cM IRX5 10265 0 ATAGTTCAACAGCATCTCCCCAA GCAGACAAGGCAGGACAAATTAC 8 14 1 1.1.2.4.1.14 BCBC-5B-0 14132907 P212084 ChickenHuman P212084 ChickenHuman End Repeat Tile chr2:22544719-22545640 (+) 1 GTGTGTGTGTGTGTGTGTGTGTG ATTTGATGAAGAAAGGGGGTGAT 8 14 2 1.1.2.4.2.14 BCBC-5B-0 14132926 P212924 Clock Enhancer P212924 Enhancer Unique Tile chr5:77377986-77378809 (-) NM_007715 - 514 77379323 12753 Clock 5330400M04Rik|mKIAA0334 circadian locomoter output cycles kaput MGI:99698 Mm.3552; Mm.392894; Mm.402834; Mm.3552; Mm.392894; Mm.402834; Mm.3552; Mm.392894; Mm.402834; Mm.3552; Mm.392894; Mm.402834; Mm.3552; Mm.392894; Mm.402834; Mm.3552; Mm.392894; Mm.402834; Mm.3552; Mm.392894; Mm.402834; Mm.3552; Mm.392894; Mm.402834; Mm.3552; Mm.392894; Mm.402834; Mm.3552; Mm.392894; Mm.402834; Mm.3552; Mm.392894; Mm.402834; Mm.3552; Mm.392894; Mm.402834 5 5 C3.3|5 43.0 cM CLOCK 9575 NM_023508 - 27077 77405886 79455 Pdcl2 1 CCTTGTGACCCACTTTATTCCTG GATCCTGCCAGTTCTTCAAGCTA 8 14 3 1.1.2.4.3.14 BCBC-5B-0 14132945 P213674 Serping1 Enhancer P213674 Enhancer Unique Tile chr2:84574877-84575940 (-) NM_009776 - 289 84575651 12258 Serping1 C1INH|C1nh serine (or cysteine) peptidase inhibitor, clade G, member 1 MGI:894696 Mm.38888 2 2 D SERPING1 710 NM_019949 + 23748 84599688 56791 Ube2l6 0 CAGCCTCTGGCTTATTGTTCTGT AGAGACAGTGGGGGCTAGGTAAC 8 14 4 1.1.2.4.4.14 BCBC-5B-0 14132964 P214796 Elf4 Enhancer P214796 Enhancer Unique Tile chrX:44672191-44673266 (-) NM_019680 - 3208 44668983 56501 Elf4 AV314029|BC042423|MGC129343|MGC129361|Mef E74-like factor 4 (ets domain transcription factor) MGI:1928377 Mm.36808; Mm.393394; Mm.36808; Mm.393394; Mm.36808; Mm.393394; Mm.36808; Mm.393394; Mm.36808; Mm.393394; Mm.36808; Mm.393394; Mm.36808; Mm.393394; Mm.36808; Mm.393394; Mm.36808; Mm.393394 X - ELF4 2000 0 CTCTGGGTTTGAGTTCTGCTGAT TGTTCACTTACTCTCCTCCAGGC 8 14 5 1.1.2.4.5.14 BCBC-5B-0 14132983 P215546 Cand2 Enhancer P215546 Enhancer Unique Tile chr6:115735358-115736320 (+) NM_025958 + 3873 115740193 67088 Cand2 2210404G23Rik|Tp120b|mKIAA0667 cullin-associated and neddylation-dissociated 2 (putative) MGI:1914338 Mm.277683 6 6 F1 CAND2 23066 NM_144805 - 10778 115724580 94346 Tmem40 0 GAACGTGGAGAAACTGCCAATAC GAGGCACAAGAAGGAGCTATTGA 8 14 6 1.1.2.4.6.14 BCBC-5B-0 14133002 P216386 Egln1 Enhancer P216386 Enhancer Unique Tile chr8:127835637-127836480 (-) NM_053207 - 1293 127834344 112405 Egln1 AI503754|C1orf12|ORF13|SM-20 EGL nine homolog 1 (C. elegans) MGI:1932286 Mm.140619 8 8 E2 EGLN1 54583 0 CCTCAACCTGTACAGCTCTTGCT AGGAGGAAACGGAAGCTCAGAC 8 14 7 1.1.2.4.7.14 BCBC-5B-0 14133021 P217508 2410014A08Rik Enhancer P217508 Enhancer Unique Tile chr5:115421715-115422714 (-) NM_175403 - 2570 115419145 109154 2410014A08Rik AI850530|ESTM19|X83352|mKIAA0152 RIKEN cDNA 2410014A08 gene MGI:1924015 Mm.153963 5 5 F|5 60.0 cM KIAA0152 9761 NM_009858 - 16512 115405203 12526 Cd8b1 0 CAAGTTCCCATCCCTAGTCACAC TAGTTTTAGATGAAGCCAGGCCA 8 14 8 1.1.2.4.8.14 BCBC-5B-0 14133040 P218176 1700021K02Rik ProximalPromoter P218176 ProximalPromoter Unique Tile chr10:60569421-60570898 (+) NM_023064;NM_001017433;NM_001017409;NM_001017419;NM_001017441;NM_001017407; + 280 60570618 65971 1700021K02Rik AI428928|Spatial|Titest RIKEN cDNA 1700021K02 gene MGI:1923820 Mm.30227 10 10 B4 C10orf27 219793 NM_009163 - 26465 60542956 20397 Sgpl1 0 ATGCTGTGGCTATCACTACGGTT CCAGTGAGCCTCTGTCTTCCTAA 8 14 9 1.1.2.4.9.14 BCBC-5B-0 14133059 P219298 Olfr378 ProximalPromoter P219298 ProximalPromoter Unique Tile chr11:73242084-73243138 (-) NM_147024 - 92 73242176 259026 Olfr378 MOR135-2 olfactory receptor 378 MGI:3030212 Mm.223411 11 - NM_147025 - 27267 73270405 259027 Olfr380 1 TTAAAGGACACGGCCTACACAAT GAGCAGGGCATAGTACAGTTGCT 8 14 10 1.1.2.4.10.14 BCBC-5B-0 14133078 P220138 1110051B16Rik ProximalPromoter P220138 ProximalPromoter Duplication Tile chr14:25094888-25095916 (+) NM_183389 + 475 25095441 278672 1110051B16Rik MGC67567 RIKEN cDNA 1110051B16 gene MGI:1916048 Mm.294083; Mm.428840; Mm.294083; Mm.428840; Mm.294083; Mm.428840; Mm.294083; Mm.428840 14 14 A3 LOC401860 401860 NM_175342 + 39797 25055091 105594 C330003B14Rik 0 AAAGGAACAGGAGGTACCAGGAC AGCTGTCACAGAGACACAGGATG 8 14 11 1.1.2.4.11.14 BCBC-5B-0 14133097 P220888 ProximalPromoter P220888 ProximalPromoter Unique Tile chr11:21214004-21214903 (+) 0 ACGAGTTGTGAATTGACGCTGTA GAGGGTGTGCTTAGTCTTCTGGA 8 14 12 1.1.2.4.12.14 BCBC-5B-0 14133116 P222010 Dmgdh Enhancer P222010 Enhancer Unique Tile chr13:94777594-94778514 (-) NM_028772 + 2404 94775190 74129 Dmgdh 1200014D15Rik|AI787269|MGC107623 dimethylglycine dehydrogenase precursor MGI:1921379 Mm.21789 13 13 C3 DMGDH 29958 NM_022884 - 2542 94775052 64918 Bhmt2 0 TAGGAAAGCCAATTGTGGAAAGA CCACTGCTACTGCTCATTTCCTT 8 14 13 1.1.2.4.13.14 BCBC-5B-0 14133135 P222760 Thrb ProximalPromoter P222760 ProximalPromoter Unique Tile chr14:16773784-16774873 (+) NM_009380 + 32 16774841 21834 Thrb Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta thyroid hormone receptor beta MGI:98743 Mm.32563 14 14 A3 THRB 7068 0 ATAATAATCCCGTCCCCATGAAC AAGGTCTTAAGCTGTGGATGCAG 8 14 14 1.1.2.4.14.14 BCBC-5B-0 14133154 P223600 Olfr1097 ProximalPromoter P223600 ProximalPromoter Unique Tile chr2:86691972-86693047 (-) NM_146843 - 40 86692012 258840 Olfr1097 MGC123667|MGC123726|MOR206-2 olfactory receptor 1097 MGI:3030931 Mm.389306 2 - NM_146845 - 31300 86724347 258842 Olfr1098 0 AAGCAAGGAGGTAAGGCAAAAAC AGCGTGAACTCAGGTTCATTTGT 8 14 15 1.1.2.4.15.14 BCBC-5B-0 14133173 P224722 2310002A05Rik ProximalPromoter P224722 ProximalPromoter Unique Tile chr3:93076536-93077468 (+) NM_001018079 + 160 93077628 69520 2310002A05Rik - RIKEN cDNA 2310002A05 gene MGI:1916770 Mm.46390 3 3 F1 NM_028798 - 23600 93101068 74175 2300002G24Rik 0 ACAGAGCAGCCTCCACTATCATC GCAATCTCTGTCACTGCTTCTCA 8 14 16 1.1.2.4.16.14 BCBC-5B-0 14133192 P225472 Cabyr ProximalPromoter P225472 ProximalPromoter Unique Tile chr18:12872213-12873154 (+) NM_027687;NM_001042419;NM_181731;NM_001042420;NM_001042418; + 11369 12884523 71132 Cabyr 1700016C01Rik|4933421A18Rik|CBP86|FSP-2|MGC130217|MGC130218 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) MGI:1918382 Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275; Mm.179740; Mm.395275 18 18 A2 CABYR 26256 0 TGTTGCGTGTATCAGTGGAAATC GATTCCCAGAATATTAGGCCCTG 8 14 17 1.1.2.4.17.14 BCBC-5B-0 14133211 P225836 Pdx1 P225836 Pdx1 Unique Tile chr1:162512035-162512737 (+) 0 CGTATAGTACTGAGCAGGCAAGA CGAGAGGACATAGAATGTTTGAA 8 14 18 1.1.2.4.18.14 BCBC-5B-0 14133230 P226964 Dalrd3 Pdx1 P226964 Pdx1 Unique Tile chr9:108428505-108429428 (+) NM_026378 + 492 108428013 67789 Dalrd3 6330580J24Rik|C77829 DALR anticodon binding domain containing 3 MGI:1915039 Mm.193395 9 9 F2 DALRD3 55152 NM_023247 - 3020 108425485 66706 4733401H18Rik 0 GTGCTCGTAGCCGATCATCTAGT TCCTCAAGACACCATCATCCTTT 8 14 19 1.1.2.4.19.14 BCBC-5B-0 14133249 P002386 Stratagene PCR 6 P002386 Spike Control Negative Stratagene PCR 6 8 14 20 1.1.2.4.20.14 BCBC-5B-0 14132889 P210938 PufferfishHuman P210938 PufferfishHuman Unique Tile chr8:93156948-93157865 (+) 0 TCCCCCAGTAACTTTCAGCTACA AACAGAATGCAGAGGCAAAAGAG 8 15 1 1.1.2.4.1.15 BCBC-5B-0 14132908 P211778 PufferfishHuman P211778 PufferfishHuman Unique Tile chr2:147567619-147568660 (+) 0 CACATCTGCTAAAAATGGGAAGG TCCAGGCTTCTGTTTCCTGTAAG 8 15 2 1.1.2.4.2.15 BCBC-5B-0 14132927 P212900 Cd36 Enhancer P212900 Enhancer Unique Tile chr5:17343728-17344714 (-) NM_007643 - 2806 17347520 12491 Cd36 FAT|GPIV|Scarb3 CD36 antigen MGI:107899 Mm.18628 5 5 A3|5 2.0 cM CD36 948 0 CATGGGTAGGTGCTGTTCTTTTC TGTGTTCGTGCTTTTCTTTCTCA 8 15 3 1.1.2.4.3.15 BCBC-5B-0 14132946 P213650 Atp6v0c Enhancer P213650 Enhancer Unique Tile chr17:23895675-23896720 (-) NM_009729 - 305 23897025 11984 Atp6v0c Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3 ATPase, H+ transporting, lysosomal V0 subunit C MGI:88116 Mm.30155; Mm.320896; Mm.30155; Mm.320896; Mm.30155; Mm.320896; Mm.30155; Mm.320896; Mm.30155; Mm.320896; Mm.30155; Mm.320896; Mm.30155; Mm.320896; Mm.30155; Mm.320896; Mm.30155; Mm.320896; Mm.30155; Mm.320896; Mm.30155; Mm.320896; Mm.30155; Mm.320896; Mm.30155; Mm.320896; Mm.30155; Mm.320896; Mm.30155; Mm.320896; Mm.30155; Mm.320896; Mm.30155; Mm.320896 17 17 A3.3 ATP6V0C 527 NM_172935 - 4316 23891359 245847 Amdhd2 1 ACTCTGACGTCATTCCCAGCTAT AAGTACCTGCACAGAGAACCAGC 8 15 4 1.1.2.4.4.15 BCBC-5B-0 14132965 P214772 Espn Enhancer P214772 Enhancer Unique Tile chr4:150974504-150975547 (-) NM_207688;NM_207691;NM_207687;NM_019585;NM_207690;NM_207689; - 1779 150972725 56226 Espn je espin MGI:1861630 Mm.264215 4 4 E1|4 80.1 cM ESPN 83715 NM_033042 + 14362 150960142 85030 Tnfrsf25 0 AGCGTCCCTGGGTACTAGCTCT GTCTCTAGTTTCCCTCCCCCTTT 8 15 5 1.1.2.4.5.15 BCBC-5B-0 14132984 P215612 C1qdc2 Enhancer P215612 Enhancer Unique Tile chr4:154801096-154802039 (+) NM_026125 + 4078 154806117 67389 C1qdc2 1110035L05Rik C1q domain containing 2 MGI:1914639 Mm.29140 4 4 E2|4 83.0 cM NM_001039159;NM_001039158;NM_021402;NM_001039157; + 13139 154787957 140499 Ube2j2 0 TGTTATAGTTGGGTTTGCAGCCT GATGACATCCATAAGGGAGCTTG 8 15 6 1.1.2.4.6.15 BCBC-5B-0 14133003 P216362 Narg1 Enhancer P216362 Enhancer Unique Tile chr3:51504290-51505380 (+) NM_053089 + 220 51504070 74838 Narg1 5730450D16Rik|6330400I15|MGC29428|Tbdn-1|mNAT1|tubedown NMDA receptor-regulated gene 1 MGI:1922088 Mm.275281; Mm.392111; Mm.275281; Mm.392111; Mm.275281; Mm.392111; Mm.275281; Mm.392111; Mm.275281; Mm.392111; Mm.275281; Mm.392111; Mm.275281; Mm.392111; Mm.275281; Mm.392111; Mm.275281; Mm.392111; Mm.275281; Mm.392111; Mm.275281; Mm.392111; Mm.275281; Mm.392111; Mm.275281; Mm.392111; Mm.275281; Mm.392111; Mm.275281; Mm.392111; Mm.275281; Mm.392111; Mm.275281; Mm.392111 3 3 D NARG1 80155 NM_025523 - 7406 51496884 66377 Ndufc1 1 CTTCAAGCGGATCTTGGTGAGT TCAAGTCAAGTTTGGCGAATACA 8 15 7 1.1.2.4.7.15 BCBC-5B-0 14133022 P217484 Myh10 Enhancer P217484 Enhancer Unique Tile chr11:68509246-68510164 (+) NM_175260 + 913 68508333 77579 Myh10 5730504C04Rik|9330167F11Rik|MGC115764|Myhn-2|Myhn2|NMHC II-B|NMHC-B|SMemb|mKIAA3005 myosin, heavy polypeptide 10, non-muscle MGI:1930780 Mm.218233 11 11 B3|11 40.0 cM MYH10 4628 1 GCAGAATCTCTCCCTAGCCTTCT AATGTACATCAAACGCTGAAGGG 8 15 8 1.1.2.4.8.15 BCBC-5B-0 14133041 P218152 Gtpbp5 ProximalPromoter P218152 ProximalPromoter Unique Tile chr2:179998902-179999836 (+) NM_181424 + 165 180000001 52856 Gtpbp5 1810011P19Rik|2900056P18Rik|D2Bwg0647e GTP binding protein 5 MGI:106565 Mm.219658 2 2 H4|2 105.0 cM GTPBP5 26164 NM_178750 + 26836 179972066 269397 Ss18l1 0 TGTATCACCCCAAAAGTTCAAT ATCCTGTCTCACAAAACCAGGAA 8 15 9 1.1.2.4.9.15 BCBC-5B-0 14133060 P218992 Foxj1 ProximalPromoter P218992 ProximalPromoter Unique Tile chr11:116151470-116152417 (-) NM_008240 - 33 116151437 15223 Foxj1 FKHL-13|HFH-4|Hfh4 forkhead box J1 MGI:1347474 Mm.378938 11 11 E2|11 78.0 cM FOXJ1 2302 NM_016857 - 28666 116122804 53413 Exoc7 1 GTCAGTGGCTCAGGCTCTTTTTA ATTAAGTAGACGCTCGGAAGGCT 8 15 10 1.1.2.4.10.15 BCBC-5B-0 14133079 P220114 Rnasel ProximalPromoter P220114 ProximalPromoter Unique Tile chr1:155510714-155511625 (+) NM_011882 + 3522 155515147 24014 Rnasel E230029I04Rik ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent) MGI:1098272 Mm.259254 1 1 G2 RNASEL 6041 NM_011267 + 8124 155502590 19734 Rgs16 0 CGTTTGTTTCCTCTCCGTGTATC CGACGTTCAGCTACTTTTGGTCT 8 15 11 1.1.2.4.11.15 BCBC-5B-0 14133098 P220864 Olfr446 ProximalPromoter P220864 ProximalPromoter Unique Tile chr6:42855943-42856888 (+) NM_146295 + 49 42856839 258292 Olfr446 MGC123528|MGC123529|MOR261-12 olfactory receptor 446 MGI:3030280 Mm.222992; Mm.333032; Mm.222992; Mm.333032; Mm.222992; Mm.333032 6 - OR2A12 346525 NM_146988 + 14812 42841131 258990 Olfr447 0 TGTGGTGTTAGGTAGAGGCCAAT CAACCTGGAATCCCAGTAGAATG 8 15 12 1.1.2.4.12.15 BCBC-5B-0 14133117 P221986 Gp5 Enhancer P221986 Enhancer Unique Tile chr16:30232275-30233188 (-) NM_008148 - 1749 30230526 14729 Gp5 GPV glycoprotein 5 (platelet) MGI:1096363 Mm.3519 16 16 B2 GP5 2814 NM_028973 - 29303 30202972 74488 Lrrc15 0 GGTCCTGCTTAGTGCCATAGGTA AAAGGGTACCATTCTTGAGCAGC 8 15 13 1.1.2.4.13.15 BCBC-5B-0 14133136 P222826 Rtl1 ProximalPromoter P222826 ProximalPromoter Unique Tile chr12:110043286-110044267 (-) NM_184109 - 76 110043210 353326 Rtl1 6430411K18Rik|Mar|Mart1|Mor1 retrotransposon-like 1 MGI:2656842 Mm.390532; Mm.397827; Mm.390532; Mm.397827 12 12 F1 NM_144513 + 49862 109993424 17263 Gtl2 0 TTTGTGAGACGTGCAGAAATGTT AGACCAAAACCTAGGGACAGAGG 8 15 14 1.1.2.4.14.15 BCBC-5B-0 14133155 P223576 Mid1 Enhancer P223576 Enhancer Unique Tile chrX:165032825-165033752 (+) NM_010797 + 3471 165029354 17318 Mid1 61B3-R|DXHXS1141|Fxy|MGC60591|Trim18 midline 1 MGI:1100537 Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944; Mm.34441; Mm.422944 X X F5|X 74.2 cM MID1 4281 0 AATGACAGGGGTTCTACTGGGTT TCCTAGGGCAAAACATGATGAGT 8 15 15 1.1.2.4.15.15 BCBC-5B-0 14133174 P224698 D11Bwg0280e ProximalPromoter P224698 ProximalPromoter End Repeat Tile chr11:6294032-6295034 (+) NM_001005867;NM_028601; + 93 6295127 52915 D11Bwg0280e 2410117E06Rik|R74931 DNA segment, Chr 11, Brigham & Women's Genetics 0280e expressed MGI:106374 Mm.1144 11 11 A1|11 25.0 cM DKFZp761I2123 83637 NM_008907 + 20836 6315870 268373 Ppia 1 GATCCAGCAGGAGCAACATAGAT GTGTGTGTGTGTGTGTGTGTGTG 8 15 16 1.1.2.4.16.15 BCBC-5B-0 14133193 P225448 Sass6 ProximalPromoter P225448 ProximalPromoter Unique Tile chr3:116586059-116586999 (+) NM_028349 + 12 116587011 72776 Sass6 2810453L12Rik spindle assembly 6 homolog (C. elegans) MGI:1920026 Mm.259648 3 3 G2 SASS6 163786 NM_175413;NM_027321; + 30978 116555081 109245 Lrrc39 0 GGACGGAGAAGGAAAAATAAACG AGGAGGGAAACGATAAACAGAGG 8 15 17 1.1.2.4.17.15 BCBC-5B-0 14133212 P226010 Cox8a Pdx1 P226010 Pdx1 Unique Tile chr19:7294076-7294975 (+) NM_007750 - 9416 7284660 12868 Cox8a COX8L cytochrome c oxidase, subunit VIIIa MGI:105959 Mm.14022 19 19 A COX8A 1351 NM_134150 - 20748 7273328 107260 Otub1 0 GGAAGTACCCCACCTTCAGAGA AAGGGATGTCACTCTCCTTAGGC 8 15 18 1.1.2.4.18.15 BCBC-5B-0 14133231 P226940 Slc7a2 Pdx1 P226940 Pdx1 Unique Tile chr8:42385008-42385930 (+) NM_007514 + 23780 42361228 11988 Slc7a2 Atrc2|Cat2|Tea solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 MGI:99828 Mm.4676 8 8 A4|8 21.0 cM SLC7A2 6542 NM_026840 + 39127 42425057 68797 Pdgfrl 0 TGAAATACATGTTGACCATCCCA TATTAGTGTGTGCGCTCATTTGG 8 15 19 1.1.2.4.19.15 BCBC-5B-0 14133250 P002362 Stratagene PCR 4 P002362 Spike Control Negative Stratagene PCR 4 8 15 20 1.1.2.4.20.15 BCBC-5B-0 14132890 P211004 PufferfishHuman P211004 PufferfishHuman Unique Tile chr2:56072687-56073692 (-) 0 TTTTTCTACCCCTTCCATTCGAT ATATGTCACTGGCAATGTTTCCC 8 16 1 1.1.2.4.1.16 BCBC-5B-0 14132909 P211754 PufferfishHuman P211754 PufferfishHuman Unique Tile chr3:34768823-34769822 (-) 0 CCCTTTTTCCTCTTTCCCTTTCT AAGCCATTAGCCTCTGTGTGTTC 8 16 2 1.1.2.4.2.16 BCBC-5B-0 14132928 P212876 Ddr1 Enhancer P212876 Enhancer Unique Tile chr17:35310403-35311317 (-) NM_007584 - 476 35309927 12305 Ddr1 6030432F18|AI323681|CD167a|Cak|Nep|PTK3A discoidin domain receptor family, member 1 MGI:99216 Mm.5021 17 17 C|17 21.5 cM DDR1 780 NM_010364 - 28670 35281733 14885 Gtf2h4 0 ATCTCCCTTAACTCTCCTCCCCT AAGTGACAGCAGAAAAGGAGCTG 8 16 3 1.1.2.4.3.16 BCBC-5B-0 14132947 P213626 Ap2m1 Enhancer P213626 Enhancer Unique Tile chr16:20444261-20445241 (+) NM_009679 + 3805 20449046 11773 Ap2m1 MGC102136 adaptor protein complex AP-2, mu1 MGI:1298405 Mm.18946; Mm.235423; Mm.18946; Mm.235423; Mm.18946; Mm.235423; Mm.18946; Mm.235423; Mm.18946; Mm.235423; Mm.18946; Mm.235423; Mm.18946; Mm.235423; Mm.18946; Mm.235423; Mm.18946; Mm.235423; Mm.18946; Mm.235423; Mm.18946; Mm.235423; Mm.18946; Mm.235423; Mm.18946; Mm.235423; Mm.18946; Mm.235423; Mm.18946; Mm.235423; Mm.18946; Mm.235423 16 16 A3 AP2M1 1173 NM_007889 + 13733 20430528 13544 Dvl3 0 GACCTGATTGTAGGTGTGGAACC GCATGGATGAGTAGAGACACCCT 8 16 4 1.1.2.4.4.16 BCBC-5B-0 14132966 P214466 Sh3gl1 Enhancer P214466 Enhancer Unique Tile chr17:55629187-55630126 (+) NM_013664 - 257 55629869 20405 Sh3gl1 C77078|EEN|SH3P8|Sh3d2b SH3-domain GRB2-like 1 MGI:700010 Mm.1773 17 17 C|17 35.0 cM SH3GL1 6455 NM_013733 + 3582 55633708 27221 Chaf1a 2 GCTTACCTGACTGCCTCAAGTGT CGTACACAGATTTCTGGCCTCTC 8 16 5 1.1.2.4.5.16 BCBC-5B-0 14132985 P215588 Prpf18 Enhancer P215588 Enhancer Unique Tile chr2:4564572-4565503 (-) NM_026045 - 3850 4569353 67229 Prpf18 2810441A10Rik PRP18 pre-mRNA processing factor 18 homolog (yeast) MGI:1914479 Mm.38529 2 2 A1 PRPF18 8559 0 CTCCAGCTTTCAGGTTGAGTCAT TCCTTCAATACTTGCCTTTCCAA 8 16 6 1.1.2.4.6.16 BCBC-5B-0 14133004 P216338 Aff4 Enhancer P216338 Enhancer Unique Tile chr11:53194579-53195591 (+) NM_033565 + 324 53194255 93736 Aff4 AF5Q31|Alf4|Laf4l|MCEF AF4/FMR2 family, member 4 MGI:2136171 Mm.124313 11 11 B1.3 AFF4 27125 NM_026479 + 26468 53168111 67966 Zcchc10 1 GACTGACTGACTGACGTCTGAGG GTCACACAAACAGCCTATTCACG 8 16 7 1.1.2.4.7.16 BCBC-5B-0 14133023 P217460 Zcchc3 Enhancer P217460 Enhancer Unique Tile chr2:152101921-152102964 (-) NM_175126 - 3504 152106468 67917 Zcchc3 2810406K24Rik zinc finger, CCHC domain containing 3 MGI:1915167 Mm.18589; Mm.391810; Mm.427626; Mm.18589; Mm.391810; Mm.427626; Mm.18589; Mm.391810; Mm.427626; Mm.18589; Mm.391810; Mm.427626; Mm.18589; Mm.391810; Mm.427626; Mm.18589; Mm.391810; Mm.427626 2 2 G3 ZCCHC3 85364 NM_177656 + 4063 152107027 228778 6820408C15Rik 0 AAGGATAAGGTTTCCAGCGTAGG ACTGCTGAGTTCCAAATGCTTTC 8 16 8 1.1.2.4.8.16 BCBC-5B-0 14133042 P218218 Sprr2i ProximalPromoter P218218 ProximalPromoter Unique Tile chr3:92492303-92493281 (+) NM_011475 + 112 92493393 20763 Sprr2i - small proline-rich protein 2I MGI:1330309 Mm.196439 3 3 F1|3 45.2 cM NM_011476 + 10208 92503489 20764 Sprr2j 0 CTAAGTGCCAAGCCTTCTTTTCC GCATGACTAGCTTGACTGGGACT 8 16 9 1.1.2.4.9.16 BCBC-5B-0 14133061 P218968 Ddx17 ProximalPromoter P218968 ProximalPromoter Unique Tile chr15:79373711-79374745 (-) NM_152806;NM_001040187;NM_199080;NM_199079; - 90 79373801 67040 Ddx17 2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|MGC79147 DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 MGI:1914290 Mm.29644 15 15 E1 DDX17 10521 NM_134090 + 29982 79343729 105785 Kdelr3 0 TATGTCCAAGTTTGTGTGGCTTG AGAATCGGGGTTGTTAGGACAGT 8 16 10 1.1.2.4.10.16 BCBC-5B-0 14133080 P220090 Olfr1019 ProximalPromoter P220090 ProximalPromoter End Repeat Tile chr2:85642659-85643559 (-) NM_147015 - 31 85642628 259017 Olfr1019 MOR180-1 olfactory receptor 1019 MGI:3030853 Mm.377790 2 - OR5AR1 219493 NM_146580 + 6733 85650292 258573 Olfr1020 1 TCTAATGAAGGTTCCATTGCACA TGTGTGTGTGTGTGTGTGTGTGT 8 16 11 1.1.2.4.11.16 BCBC-5B-0 14133099 P220840 Mfap5 ProximalPromoter P220840 ProximalPromoter Unique Tile chr6:122456069-122457008 (+) NM_015776 + 22286 122479294 50530 Mfap5 MAGP-2 microfibrillar associated protein 5 MGI:1354387 Mm.41931 6 6 F1 MFAP5 8076 2 GTGAACTAAAGTCTGGGTGCTGG ATCGGTGTGTAGATTGGTGTGTG 8 16 12 1.1.2.4.12.16 BCBC-5B-0 14133118 P221680 Ube2s ProximalPromoter P221680 ProximalPromoter Unique Tile chr7:4415419-4416513 (-) NM_133777 - 4 4415415 77891 Ube2s 0910001J09Rik|6720465F12Rik|AA409170|E2-EPF|MGC101982 ubiquitin-conjugating enzyme E2S MGI:1925141 Mm.150856; Mm.389787; Mm.150856; Mm.389787; Mm.150856; Mm.389787; Mm.150856; Mm.389787; Mm.150856; Mm.389787; Mm.150856; Mm.389787; Mm.150856; Mm.389787; Mm.150856; Mm.389787; Mm.150856; Mm.389787; Mm.150856; Mm.389787; Mm.150856; Mm.389787 7 7 A1 UBE2S 27338 NM_009081 + 19354 4396065 19943 Rpl28 0 CTCAGCGGTTAAGATCATCGACT TTACGTCTGCTCCTCGGTAGAAC 8 16 13 1.1.2.4.13.16 BCBC-5B-0 14133137 P222802 Tlm ProximalPro