The following files contain the latest GO Function predictions made by CBIL's GO Function prediction algorithm: Filename Description --------------------------------------------------------------------- musDoTS_GOFunction.tab.gz musDoTS GO Function Predictions A_Thaliana_GOFunction.tab.gz A.Thaliana GO Function Predictions (based on translated predicted genes) C_Elegans_GOFunction.tab.gz C.Elegans GO Function Predictions (based on Wormpep54 predicted proteins) For a complete description of data sources, please refer to the following: http://www.cbil.upenn.edu/downloads/GUS/data/GOPredictions/GOPoster.doc The files are TAB DELIMITED: For example, the following line represents the GO Function predictions for musDoTS Assembly 480685 (DT.480685): 480685 3824 3978 16853 16854 16857 This implies that the musDoTS assembly 480685 has GO IDs 3824, 3978, 16853, 16854, 16857 predicted. All GO Function predictions provided here are based on the following: 1) Exclusion of all IEA associations in the rule-generation phase 2) Exclusion of all 'Molecular Function Unknown' associations in the rule generation phase 3) Both CDD and ProDom were used for rule generation (learned domain- function associations) ========================================================== The CBIL Software and Data License, Version 1.0 Copyright (c) 2001 The Computational Biology and Informatics Laboratory (CBIL) at the University of Pennsylvania. All rights reserved. Redistribution and use of software in source and binary forms or of data, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code, binary software or data alone must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions as part of a package or product must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. The end-user documentation included with the redistribution, if any, must include the following acknowledgment: "This product includes software and/or data developed by CBIL at the Center for Bioinformatics at the University of Pennsylvania (http://www.pcbi.upenn.edu)." Alternately, this acknowledgment may appear in the software or with the data itself, if and wherever such third-party acknowledgments normally appear. 4. The names "CBIL" and "Penn Center for Bioinformatics" must not be used to endorse or promote products derived from this software/data without prior written permission. THIS SOFTWARE/DATA IS PROVIDED ``AS IS'' AND ANY EXPRESSED OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL CBIL OR THE PENN CENTER FOR BIOINFORMATICS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. ==================================================================== This license is based on the open source license from the Apache Software Foundation (http://www.apache.org). ====================================================================